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pyproject.toml
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[tool.poetry]
name = "depmap-omics"
version = "0.1.0"
description = "CDS-omics pipelines"
authors = ["CDS-omics <[email protected]>"]
readme = "README.md"
packages = [{include = "depmapomics"}, {include="mgenepy"}]
[tool.poetry.dependencies]
python = "^3.9"
numpy = "^1.24.1"
pandas = "^1.5.3"
taigapy = {git = "https://github.com/broadinstitute/taigapy.git", rev = "0b67741f18fe6e3c2f508ee84b06ca3bed853b82"}
seaborn = "^0.12.2"
depmap_omics_upload = {git = "https://github.com/broadinstitute/depmap_omics_upload"}
pyright = "1.1.293"
pandera = "^0.13.4"
fire = "^0.5.0"
tqdm = "^4.64.1"
scipy="^1.0.0"
firecloud_dalmatian= {git = "https://github.com/pgm/dalmatian", rev = "5f37ef9"}
miniwdl = "^1.10.0"
ruff = "^0.0.283"
biomart = "^0.9.2"
packaging = ">=23.1"
[tool.poetry.scripts]
depmapomics = 'depmapomics.__main__:main'
[[tool.poetry.source]]
name = "public-python"
url = "https://us-central1-python.pkg.dev/cds-artifacts/public-python/simple/"
priority = "supplemental"
[tool.poetry.group.dev.dependencies]
jupyter = "^1.0.0"
notebook = "^6.5.2"
pyright = "^1.1.290"
pytest = "^7.2.1"
pyright-ratchet = {git = "https://github.com/pgm/pyright-ratchet.git"}
flake8 = "^6.0.0"
[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"