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Changelog

(unreleased)

  • Release: version 🚀 [Jérémie Kalfon]
  • Update setup.py. [Jérémie Kalfon]
  • Update requirements.txt. [Jérémie Kalfon]
  • Update README.md. [Jérémie Kalfon]
  • Update README.md. [Jérémie Kalfon]
  • Release: version 1.1.0 🚀 [jkobject]

1.1.0 (2022-04-01)

  • Update to the notebooks. [jkobject]

  • Quick debug and adding more datasets. [jkobject]

  • Merge branch 'master' of https://github.com/broadinstitute/celligner. [jkobject]

  • Update README.md. [Jérémie Kalfon]

  • Some trials with the release, making new release too. [jkobject]

  • Som debugs and reformating. [jkobject]

  • Again. [jkobject]

  • Better viz of new dataset. [jkobject]

  • CCLF analysis. [jkobject]

  • Updating the demo with the tests. [jkobject]

  • Some small improvements. [jkobject]

  • Adding a new release notebook. [jkobject]

  • Format. [jkobject]

  • Updating formatting. [jkobject]

  • Debugging limma when different version of rpy2. [jkobject]

  • Update README.md. [Jérémie Kalfon]

  • Merge pull request #3 from broadinstitute/dev. [Jérémie Kalfon]

    Update README.md

  • From javad's comment. [jkobject]

  • Update README.md. [Jérémie Kalfon]

  • Merge branch 'master' into dev. [Jérémie Kalfon]

  • Update README.md. [Jérémie Kalfon]

  • Adding a bit of doc and WIP on QC. [jkobject]

  • Release: version 1.0.1 🚀 [jkobject]

1.0.1 (2021-10-27)

  • Cleanup. [jkobject]
  • Finishing examples. [jkobject]
  • Release: version 1.0.0 🚀 [jkobject]

1.0.0 (2021-10-27)

  • Finishig multidataseet alignment and final debugs. [jkobject]
  • Release: version 0.9.3 🚀 [jkobject]

0.9.3 (2021-10-25)

  • Release: version 0.9.2 🚀 [jkobject]

0.9.2 (2021-10-25)

  • Merge pull request #2 from jkobject/master. [Jérémie Kalfon]

    tomerge

  • Release: version 0.9.1 🚀 [jkobject]

  • Merge pull request #1 from jkobject/dev. [Jérémie Kalfon]

  • Merge branch 'master' of https://github.com/broadinstitute/celligner. [Jérémie Kalfon]

  • Adding data and planning. [Jérémie Kalfon]

0.9.1 (2021-10-25)

  • Nthi. [jkobject]
  • Nothing really. [jkobject]
  • Better readme. [jkobject]
  • Merge branch 'dev' of https://github.com/jkobject/celligner into dev. [jkobject]
  • Update .github/FUNDING.yml. [Jérémie Kalfon]
  • Delete rename_project.yml. [Jérémie Kalfon]
  • Delete rename_project.sh. [Jérémie Kalfon]
  • Delete init.sh. [Jérémie Kalfon]
  • Adding doc and remving snn. [jkobject]
  • Release: version 0.9.0 🚀 [jkobject]

0.9.0 (2021-10-24)

  • Updating mnn too. [jkobject]
  • More on celligner. [jkobject]
  • Continuing celligner debug. [jkobject]
  • Debuging marioni 1/n. [jkobject]
  • Updating contrastive and mnnpy. [jkobject]
  • Making it more prod ready. [jkobject]
  • Making a prod version. [jkobject]
  • Finishing debugging. [jkobject]
  • Cont. [jkobject]
  • Coontinuing. [jkobject]
  • Make it more productionalized. [jkobject]
  • Improving. [jkobject]
  • Continuing adding new mnn version (trying rgular mnn) [jkobject]
  • Making more changes. [jkobject]
  • Adding too giti. [jkobject]
  • Finish debug yay!! [jkobject]
  • Finish debug yay!! [jkobject]
  • Continuing debugs. [jkobject]
  • Making demo. [jkobject]
  • Coninuing work. [jkobject]
  • Redoing. [jkobject]
  • Cleanup. [jkobject]
  • WIP on celligner python. [jkobject]
  • WIP on python's celigner. [jkobject]
  • Update README.md. [Jérémie Kalfon]
  • Better doc. [Jérémie Kalfon]
  • Update to README on multidataset. [Allie Warren]
  • Adding code to run Celligner with additional datasets. [Allie Warren]
  • Adding statements to clear unused objects to reduce memory. [Allie Warren]
  • Adding code to install required packages and adding imports to description. [Allie Warren]
  • Merge branch 'master' of https://github.com/broadinstitute/celligner. [Allie Warren]
  • Create README. [acwarren]
  • Adding plots to output. [Allie Warren]
  • Add documentation to helper methods and add test for NAs in data. [Allie Warren]
  • Add manual for methods. [Allie Warren]
  • Added error tests and updated documentation. [Allie Warren]
  • Creating repository for celligner package. [Allie Warren]