QC approaches

[petermchale]

This video describes a number of QC steps that are implemented in an R package. Are these also implemented in mepylome? Thanks.

• probe "masking"
• pOOBAH
• dyeBiasNL

[brj0]

Mepylome incorporates three preprocessing methods—Illumina, SWAN, and NOOB—which include dye correction and out-of-band background correction (see MethylData in beads.py). However, it currently lacks QC checks and probe masking functionality.