fixing gain tracker #2212
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| name: Run Unix | |
| on: [push, pull_request] | |
| jobs: | |
| RunUnix: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 4 | |
| matrix: | |
| os: [ubuntu-20.04, macos-11.0] | |
| steps: | |
| # compile and prepare env | |
| - name: Clone Repository | |
| uses: actions/checkout@v2 | |
| - name: Set Version | |
| id: version | |
| run: if [ $GITHUB_REF_TYPE == "tag" ]; then echo "::set-output name=version::$GITHUB_REF_NAME"; else echo "::set-output name=version::$GITHUB_SHA"; fi | |
| - name: Check Version | |
| run: echo ${{ steps.version.outputs.version }} | |
| - name: Install Python 3.7 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.7.7' | |
| architecture: 'x64' | |
| - name: Install Python Dependencies | |
| if: (matrix.os == 'ubuntu-20.04') | |
| run: | | |
| sudo -H apt-get update -y | |
| sudo -H apt-get install -y python3-setuptools python3-pygments libbluetooth-dev | |
| env: | |
| DEBIAN_FRONTEND: noninteractive | |
| - name: Install Node | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: 18 | |
| - name: Install Typescript | |
| run: | | |
| npm install -g ts-node | |
| - name: Install Ninja | |
| if: (matrix.os == 'macos-11.0') | |
| uses: seanmiddleditch/gha-setup-ninja@master | |
| with: | |
| version: 1.10.2 | |
| - name: Install Julia | |
| uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: 1.3.1 | |
| - name: Setup Cmake | |
| uses: jwlawson/[email protected] | |
| with: | |
| cmake-version: '3.21.x' | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: 11.0.3 | |
| # build simpleble outside from brainflow because of different deployment targets | |
| - name: Compile SimpleBLE MacOS | |
| if: (matrix.os == 'macos-11.0') | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/third_party/SimpleBLE/simpleble/build | |
| cd $GITHUB_WORKSPACE/third_party/SimpleBLE/simpleble/build | |
| cmake -G Ninja -DCMAKE_OSX_ARCHITECTURES="arm64;x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed -DCMAKE_BUILD_TYPE=Release .. | |
| ninja | |
| ninja install | |
| - name: Compile BrainFlow MacOS | |
| if: (matrix.os == 'macos-11.0') | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/build | |
| cd $GITHUB_WORKSPACE/build | |
| cmake -G Ninja -DBRAINFLOW_VERSION=$BRAINFLOW_VERSION -DBUILD_ONNX=ON -DBUILD_BLUETOOTH=ON -DBUILD_TESTS=ON -DWARNINGS_AS_ERRORS=ON -DCMAKE_OSX_ARCHITECTURES="arm64;x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET=10.13 -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed -DCMAKE_BUILD_TYPE=Release .. | |
| ninja | |
| ninja install | |
| env: | |
| BRAINFLOW_VERSION: ${{ steps.version.outputs.version }} | |
| - name: Compile BrainFlow Ubuntu | |
| if: (matrix.os == 'ubuntu-20.04') | |
| run: | | |
| mkdir $GITHUB_WORKSPACE/build | |
| cd $GITHUB_WORKSPACE/build | |
| cmake -DBRAINFLOW_VERSION=$BRAINFLOW_VERSION -DBUILD_BLUETOOTH=ON -DBUILD_ONNX=ON -DBUILD_TESTS=ON -DWARNINGS_AS_ERRORS=ON -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed -DCMAKE_BUILD_TYPE=Release .. | |
| make | |
| make install | |
| env: | |
| BRAINFLOW_VERSION: ${{ steps.version.outputs.version }} | |
| - name: Compile BrainFlow in ManyLinux | |
| # bindings in production have to use libraries compiled inside this image! | |
| if: (matrix.os == 'ubuntu-20.04') | |
| run: | | |
| docker pull dockcross/manylinux2014-x64:20210708-94745ff | |
| docker run -e BRAINFLOW_VERSION=$BRAINFLOW_VERSION -e GITHUB_WORKSPACE=$GITHUB_WORKSPACE -v $GITHUB_WORKSPACE:$GITHUB_WORKSPACE dockcross/manylinux2014-x64:20210708-94745ff /bin/bash -c "yum install -y bluez-libs-devel dbus-devel && /opt/python/cp36-cp36m/bin/pip3.6 install cmake==3.21.4 && cd $GITHUB_WORKSPACE && mkdir build_docker && cd build_docker && /opt/_internal/cpython-3.6.14/bin/cmake -DBRAINFLOW_VERSION=$BRAINFLOW_VERSION -DBUILD_ONNX=ON -DBUILD_BLE=ON -DBUILD_BLUETOOTH=ON -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/installed_docker -DCMAKE_BUILD_TYPE=Release .. && make && make install" | |
| env: | |
| BRAINFLOW_VERSION: ${{ steps.version.outputs.version }} | |
| - name: Setup Python Package | |
| run: | | |
| cd $GITHUB_WORKSPACE/python_package | |
| sudo -H python3 -m pip install -U . | |
| - name: Build Node Package | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/brainflow | |
| npm install | |
| npm run build | |
| - name: Install Node Tests | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm install | |
| - name: Setup Java package | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn package | |
| cp -av $GITHUB_WORKSPACE/java_package/brainflow/target/classes/brainflow/. $GITHUB_WORKSPACE/java_package/brainflow/target/classes/ | |
| cp -av $GITHUB_WORKSPACE/java_package/brainflow/target/classes/brainflow/. $GITHUB_WORKSPACE/java_package/brainflow/target/classes/ | |
| - name: Build Get Data Test | |
| run: | | |
| cd $GITHUB_WORKSPACE/cpp_package/examples/get_data | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_PREFIX_PATH=$GITHUB_WORKSPACE/installed .. | |
| make | |
| - name: Build Signal Processing Test | |
| run: | | |
| cd $GITHUB_WORKSPACE/cpp_package/examples/signal_processing | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_PREFIX_PATH=$GITHUB_WORKSPACE/installed .. | |
| make | |
| - name: Build ML Demo Test | |
| run: | | |
| cd $GITHUB_WORKSPACE/cpp_package/examples/ml | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_PREFIX_PATH=$GITHUB_WORKSPACE/installed .. | |
| make | |
| - name: Install Emulator | |
| run: | | |
| cd $GITHUB_WORKSPACE/emulator | |
| sudo -H python3 -m pip install -U . | |
| - name: Install Python test Dependencies | |
| run: sudo -H python3 -m pip install -r $GITHUB_WORKSPACE/python_package/examples/tests/requirements.txt | |
| # start testing | |
| - name: Run unit tests | |
| run: $GITHUB_WORKSPACE/build/tests/brainflow_tests | |
| - name: Run All Julia Tests | |
| run: | | |
| export LD_LIBRARY_PATH=$GITHUB_WORKSPACE/installed/lib:$LD_LIBRARY_PATH | |
| julia --project=$GITHUB_WORKSPACE/julia_package/brainflow -e "import Pkg; Pkg.test()" | |
| - name: Cyton Python | |
| run: sudo -H python3 ./emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id 0 --serial-port | |
| - name: Cyton Python Commands | |
| run: sudo -H python3 ./emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/cyton_commands.py --serial-port | |
| - name: Cyton Python Markers | |
| run: sudo -H python3 ./emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/markers.py --board-id 0 --serial-port | |
| - name: Multiboard Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_multiboard_get_data.py --board-id 0 --serial-port | |
| - name: Cyton Cpp | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/brainflow_get_data --board-id 0 --serial-port | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Synthetic Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id -1 | |
| - name: Synthetic Python Multiple Buffers | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/multiple_buffers.py | |
| - name: Synthetic Python Multiple Streamers | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/multiple_streamers.py | |
| - name: Playback Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/playback_test.py | |
| - name: Synthetic Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/brainflow_get_data --board-id -1 | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Synthetic Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.BrainFlowGetData" -Dexec.args="--board-id -1" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Synthetic Java Markers | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.Markers" -Dexec.args="--board-id -1" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Cyton Daisy Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id 2 --serial-port | |
| - name: Cyton Daisy Python Markers | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/cyton_linux.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/markers.py --board-id 2 --serial-port | |
| - name: Galea Cpp | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/galea_udp.py $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/brainflow_get_data --board-id 3 --ip-address 127.0.0.1 | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Galea Cpp Markers | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/galea_udp.py $GITHUB_WORKSPACE/cpp_package/examples/get_data/build/markers --board-id 3 --ip-address 127.0.0.1 | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Streaming Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/streaming_board_emulator.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_get_data.py --board-id -2 --ip-address 225.1.1.1 --ip-port 6677 --master-board -1 | |
| - name: Streaming Python Markers | |
| run: sudo -H python3 $GITHUB_WORKSPACE/emulator/brainflow_emulator/streaming_board_emulator.py python3 $GITHUB_WORKSPACE/python_package/examples/tests/markers.py --board-id -2 --ip-address 225.1.1.1 --ip-port 6677 --master-board -1 | |
| - name: Denoising Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/denoising.py | |
| - name: Serialization Python | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/serialization.py | |
| - name: Python Release All | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/release_all.py | |
| - name: Filters Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/signal_filtering.py | |
| - name: Transforms Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/transforms.py | |
| - name: Downsampling Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/downsampling.py | |
| - name: ICA Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/ica.py | |
| - name: CSP Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/csp.py | |
| - name: Windowing Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/windowing.py | |
| - name: MNE Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/brainflow_to_mne.py | |
| - name: BandPower Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/band_power.py | |
| - name: BandPowerAll Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/band_power_all.py | |
| - name: Denoising Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/denoising | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Downsampling Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/downsampling | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: CSP Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/csp | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Windowing Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/windowing | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Filters Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/signal_filtering | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Serialization Cpp | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| sudo -H $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/serialization | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Transforms Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/transforms | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: BandPower Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/signal_processing/build/band_power | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Denoising Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.Denoising" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: ICA Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.ICA" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Downsampling Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.Downsampling" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: CSP Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.CSP" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Windowing Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.Windowing" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Transforms Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.Transforms" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: BandPower Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.BandPower" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: EEG Metrics Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/eeg_metrics.py --board-id -1 | |
| - name: EEG Metrics Custom Python | |
| run: sudo -H python3 $GITHUB_WORKSPACE/python_package/examples/tests/eeg_metrics_ci.py --board-id -1 --classifier 2 --metric 2 --model-file $GITHUB_WORKSPACE/src/ml/train/logreg_mindfulness.onnx | |
| - name: EEG Metrics Cpp | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/ml/build/eeg_metrics --board-id -1 | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: EEG Metrics Cpp Dyn Lib | |
| if: (matrix.os == 'ubuntu-20.04') | |
| run: $GITHUB_WORKSPACE/cpp_package/examples/ml/build/eeg_metrics_ci --board-id -1 --metric 2 --classifier 1 --model-file $GITHUB_WORKSPACE/cpp_package/examples/ml/build/libdyn_lib_test.so | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: EEG Metrics Java | |
| run: | | |
| cd $GITHUB_WORKSPACE/java_package/brainflow | |
| mvn exec:java -Dexec.mainClass="brainflow.examples.EEGMetrics" -Dexec.args="--board-id -1" | |
| env: | |
| LD_LIBRARY_PATH: ${{ github.workspace }}/installed/lib | |
| - name: Synthetic Node | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm run brainflow_get_data | |
| - name: Signal Filters Node | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm run signal_filtering | |
| - name: Serialization Node | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm run serialization | |
| - name: Downsampling Node | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm run downsampling | |
| - name: Denoising Node | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm run denoising | |
| - name: EEG Metrics Node | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm run eeg_metrics | |
| - name: BandPowerAll Node | |
| run: | | |
| cd $GITHUB_WORKSPACE/nodejs_package/tests | |
| npm run bandpower_all | |
| # deploy started | |
| - name: Install AWS CLI | |
| run: sudo -H python3 -m pip install awscli==1.21.10 | |
| - name: Push Libraries Linux Docker | |
| if: ${{ github.event_name == 'push' && matrix.os == 'ubuntu-20.04' && github.repository == 'brainflow-dev/brainflow' }} | |
| run: | | |
| aws s3 cp $GITHUB_WORKSPACE/installed_docker/lib/ s3://brainflow/$GITHUB_SHA/linux --recursive | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| - name: Push Libraries MacOS Dev | |
| if: ${{ github.event_name == 'push' && matrix.os == 'macos-11.0' && github.repository == 'brainflow-dev/brainflow' }} | |
| run: | | |
| aws s3 cp $GITHUB_WORKSPACE/installed/lib/ s3://brainflow/$GITHUB_SHA/macos_release --recursive | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} |