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index_reassignment.py
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index_reassignment.py
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from statistics_swc import *
def index_reassign(dlist, dend_add3d, bo, con, axon, basal, apical, elsep, soma_index, bo_max, action):
if action == 'branch':
bo_max+=1
bo_sorted_axon_dends=[]
for i in range(1,bo_max+1):
for dend in axon:
if bo[dend]==i:
bo_sorted_axon_dends.append(dend)
bo_sorted_basal_dends=[]
for i in range(1,bo_max+1):
for dend in basal:
if bo[dend]==i:
bo_sorted_basal_dends.append(dend)
bo_sorted_apical_dends=[]
for i in range(1,bo_max+1):
for dend in apical:
if bo[dend]==i:
bo_sorted_apical_dends.append(dend)
bo_sorted_elsep_dends=[]
for i in range(1,bo_max+1):
for dend in elsep:
if bo[dend]==i:
bo_sorted_elsep_dends.append(dend)
mylist=[]
'''for i in soma_index:
mylist.append(i)
ind=i[0]
index=ind+1'''
index=1
for i in range(len(soma_index)):
if i==0:
soma_index[i][0]=1
soma_index[i][6]=-1
previous=index
index+=1
mylist.append(soma_index[i])
else:
soma_index[i][0]=index
soma_index[i][6]=previous
previous=index
index+=1
mylist.append(soma_index[i])
for dend in bo_sorted_axon_dends:
for i in range(len(dend_add3d[dend])):
if bo[dend]==1:
if i==0:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=1
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
if bo[dend]>1:
if i==0:
parent_dend=con[dend_add3d[dend][i][0]]
parent_point=dend_add3d[parent_dend][-1]
dend_add3d[dend][i][6]=parent_point[0]
dend_add3d[dend][i][0]=index
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
for dend in bo_sorted_basal_dends:
for i in range(len(dend_add3d[dend])):
if bo[dend]==1:
if i==0:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=1
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
if bo[dend]>1:
if i==0:
parent_dend=con[dend_add3d[dend][i][0]]
parent_point=dend_add3d[parent_dend][-1]
dend_add3d[dend][i][6]=parent_point[0]
dend_add3d[dend][i][0]=index
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
for dend in bo_sorted_apical_dends:
for i in range(len(dend_add3d[dend])):
if bo[dend]==1:
if i==0:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=1
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
if bo[dend]>1:
if i==0:
parent_dend=con[dend_add3d[dend][i][0]]
parent_point=dend_add3d[parent_dend][-1]
dend_add3d[dend][i][6]=parent_point[0]
dend_add3d[dend][i][0]=index
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
for dend in bo_sorted_elsep_dends:
for i in range(len(dend_add3d[dend])):
if bo[dend]==1:
if i==0:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=1
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
if bo[dend]>1:
if i==0:
parent_dend=con[dend_add3d[dend][i][0]]
parent_point=dend_add3d[parent_dend][-1]
dend_add3d[dend][i][6]=parent_point[0]
dend_add3d[dend][i][0]=index
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
else:
dend_add3d[dend][i][0]=index
dend_add3d[dend][i][6]=previous
previous=index
index+=1
mylist.append(dend_add3d[dend][i])
newfile=[]
for k in mylist:
m=' %d %d %.2f %.2f %.2f %.2f %d' % (k[0], k[1], k[2], k[3], k[4], k[5], k[6])
newfile.append(m)
return newfile