Save Jpar0 to output tokamak grids #1174
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| [push, pull_request] | |
| concurrency: | |
| group: ${{ github.workflow}}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| if: always() | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, '3.10'] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| pytest | |
| integrated-tests: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| if: always() | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, '3.10'] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Integrated tests | |
| run: | | |
| pip install pytest xarray | |
| cd integrated_tests/ | |
| ./test_suite.py | |
| examples: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| if: always() | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install sympy | |
| pip install -e . | |
| - name: Examples | |
| run: | | |
| cd examples/tokamak | |
| ./tokamak_example.py --no-plot lsn | |
| ./tokamak_example.py --no-plot usn | |
| ./tokamak_example.py --no-plot cdn | |
| ./tokamak_example.py --no-plot ldn | |
| ./tokamak_example.py --no-plot udn | |
| ./tokamak_example.py --no-plot udn2 | |
| cd ../torpex-xpoint | |
| hypnotoad-torpex --noplot torpex-coils.yaml | |
| hypnotoad-torpex --noplot torpex-coils-nonorth.yaml | |
| utilities: | |
| # Check that various command line utilities provided by hypnotoad keep | |
| # running without errors. Correctness of output is not tested! | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| if: always() | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install xbout | |
| pip install -e . | |
| - name: Utilities | |
| run: | | |
| cd integrated_tests/grid_files | |
| hypnotoad-plot-equilibrium --no-show --output test-single-null.pdf test_single-null.eqdsk | |
| hypnotoad-plot-equilibrium --no-show --wall --separatrix --psi-labels --color-contours --highlight-region 0.99 1.01 --highlight-color blue test_single-null.eqdsk | |
| hypnotoad-plot-equilibrium --no-show --wall --separatrix --psi-labels --color-contours --highlight-region 0.99 1.01 --highlight-color blue test_connected-double-null.eqdsk | |
| hypnotoad-plot-equilibrium --no-show --wall --separatrix --psi-labels --color-contours --highlight-region 0.99 1.01 --highlight-color blue test_disconnected-double-null.eqdsk | |
| echo "psinorm_core: 0.99" > test.yml | |
| echo "psinorm_sol: 1.01" >> test.yml | |
| hypnotoad-get-flux-surfaces test_single-null.eqdsk test.yml | |
| hypnotoad-get-flux-surfaces --output test1.nc --save-plot test.png test_single-null.eqdsk test.yml | |
| hypnotoad-get-flux-surfaces --output test2.nc --save-plot test.pdf test_connected-double-null.eqdsk test.yml | |
| # modify input file so that we actually detect the disconnection within the grid | |
| echo "nx_inter_sep: 2" >> test.yml | |
| hypnotoad-get-flux-surfaces --output test3.nc --save-plot test.pdf test_disconnected-double-null.eqdsk test.yml | |
| cd ../connected_doublenull_orthogonal | |
| hypnotoad-plot-grid-cells --no-show --save-as test.svg expected_orthogonal.grd.nc | |
| hypnotoad-plot-grid-cells --no-show --mxg 3 --branch-cuts --separatrix --targets expected_orthogonal.grd.nc | |
| hypnotoad-recreate-inputs -g test1.eqdsk expected_orthogonal.grd.nc | |
| hypnotoad-recreate-inputs -g test2.eqdsk -y test.yml expected_orthogonal.grd.nc | |
| flake8: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| if: always() | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Lint with flake8 | |
| run: | | |
| pip install flake8 | |
| flake8 | |
| black: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| if: always() | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Check formatting with black | |
| run: | | |
| pip install black | |
| black --check --diff --color . |