README.md

HMC Processing Pipeline

What is this?

*tk

Running it

1. Fetch the Silva taxonomic reference database from Zenodo and put it in the resources/ directory. We're currently using silva_nr99_v138_train_set.fa.gz.
2. *tk

python3 -m venv venv
source venv/bin/activate
pip install --upgrade pip
pip install snakemake

snakemake --use-singularity --jobs 45 --slurm --default-resources slurm_account=blekhman slurm_partition=blekhman