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Revisions

  • removed references to pages replaced by README.md

    @jklynch jklynch committed Jan 4, 2018
    fd1093f

  • Destroyed Running hominid on sample data (markdown)

    @jklynch jklynch committed Jan 4, 2018
    af57a50

  • Destroyed Installation (markdown)

    @jklynch jklynch committed Jan 4, 2018
    8372220

  • Destroyed Requirements (markdown)

    @jklynch jklynch committed Jan 4, 2018
    89c9570

  • Destroyed Set up a virtualenv on Linux (markdown)

    @jklynch jklynch committed Jan 4, 2018
    c39231b

  • Updated Set up a virtualenv on Linux (markdown)

    @jklynch jklynch committed Dec 25, 2017
    e33b20e

  • Updated Running hominid on sample data (markdown)

    @jklynch jklynch committed Dec 25, 2017
    1a29daa

  • Updated Running hominid on sample data (markdown)

    @jklynch jklynch committed Dec 25, 2017
    c528202

  • Updated Set up a virtualenv on Linux (markdown)

    @jklynch jklynch committed Dec 25, 2017
    2e8dcdd

  • Fixed grammatical error

    @BlekhmanLabMember BlekhmanLabMember committed Jul 11, 2017
    87149af

  • Merge branch 'master' of https://github.com/blekhmanlab/hominid.wiki

    @BlekhmanLabMember BlekhmanLabMember committed Jul 11, 2017
    a7c1ac6

  • Significance is determined by q-value, not p-value. MAF lower cutoff can not be wet by the option --maf-lower-cutoff. Figure 4 now contains the boxplots of examples of SNPs and bacteria that correla te. modified: HOMINID-pipeline.md modified: Running-hominid-on-your-data.md modified: Running-sort-results-on-your-data.md

    @BlekhmanLabMember BlekhmanLabMember committed Jul 11, 2017
    69f24a2

  • remove one-step installation until setup.py handles the example scripts

    @jklynch jklynch committed Dec 27, 2016
    2b5d7a6

  • add link to instructions for creating a virtual environment

    @jklynch jklynch committed Dec 27, 2016
    c2e36a4

  • add installation step

    @jklynch jklynch committed Dec 27, 2016
    b506eb6

  • initial commit

    @jklynch jklynch committed Dec 27, 2016
    f81eeb6

  • Changing Hominid/hominid --> HOMINID when referring to the pipeline/analysis * hominid, when referring to the computer program, is left lowercase

    @BlekhmanLabMember BlekhmanLabMember committed Sep 27, 2016
    9aebe18

  • Changing Ubuntu versions that the software was tested on

    @BlekhmanLabMember BlekhmanLabMember committed Sep 26, 2016
    31e7c9c

  • change script names to reflect installed package usage

    @jklynch jklynch committed Sep 26, 2016
    26b3ac6

  • install rpy2 with conda

    @jklynch jklynch committed Sep 26, 2016
    a0abe7c

  • added instruction to close and open terminal after installing miniconda3

    @jklynch jklynch committed Sep 26, 2016
    4b78b24

  • modified script names to reflect installed package usage

    @jklynch jklynch committed Sep 25, 2016
    9c082fc

  • modified script names to reflect installed package usage

    @jklynch jklynch committed Sep 25, 2016
    70af851

  • renamed hominid.py to reflect installed package usage

    @jklynch jklynch committed Sep 25, 2016
    2439324

  • renamed sample data page

    @jklynch jklynch committed Sep 25, 2016
    bb070d8

  • Destroyed Running software on sample data (markdown)

    @jklynch jklynch committed Sep 25, 2016
    8f7e806

  • adding new page

    @jklynch jklynch committed Sep 25, 2016
    7a60179

  • initial commit

    @jklynch jklynch committed Sep 25, 2016
    2ea4557

  • modified script names to reflect installed package

    @jklynch jklynch committed Sep 25, 2016
    8653812

  • replaced minimum of 2 processes for mpirun

    @jklynch jklynch committed Sep 25, 2016
    774479d