diff --git a/auspice/cartography_ncov_2020-2022.json b/auspice/cartography_ncov_2020-2022.json
index 31769260..b28e7e5e 100644
--- a/auspice/cartography_ncov_2020-2022.json
+++ b/auspice/cartography_ncov_2020-2022.json
@@ -1 +1 @@
-{"version": "v2", "meta": {"title": "Genetic cartography of SARS-CoV-2 (Jan 2020-Jan 2022)", "updated": "2023-07-14", "build_url": "https://github.com/blab/cartography", "maintainers": [{"name": "Sravani Nanduri"}, {"name": "John Huddleston"}], "display_defaults": {"color_by": "Nextstrain_clade", "distance_measure": "num_date", "geo_resolution": "division", "map_triplicate": true}, "genome_annotations": {"nuc": {"end": 29903, "start": 1, "strand": "+"}, "S": {"end": 25384, "seqid": "sars-cov-2-nextstrain/config/annotation.gff", "start": 21563, "strand": "+", "type": "gene"}}, "colorings": [{"key": "num_date", "title": "Sampling date", "type": "continuous"}, {"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "umap_y", "title": "UMAP y", "type": "continuous"}, {"key": "pca_label_for_Nextclade_pango_collapsed", "title": "PCA cluster (Nextclade pango)", "type": "categorical"}, {"key": "umap_label_for_Nextstrain_clade", "title": "UMAP cluster (Nextstrain clade)", "type": "categorical"}, {"key": "mds_label_for_Nextclade_pango_collapsed", "title": "MDS cluster (Nextclade pango)", "type": "categorical"}, {"key": "t-sne_label_for_Nextclade_pango_collapsed", "title": "t-SNE cluster (Nextclade pango)", "type": "categorical"}, {"key": "mds1", "title": "MDS 1", "type": "continuous"}, {"key": "mds2", "title": "MDS 2", "type": "continuous"}, {"key": "umap_label_for_Nextclade_pango_collapsed", "title": "UMAP cluster (Nextclade pango)", "type": "categorical"}, {"key": "pca2", "title": "PCA 2", "type": "continuous"}, {"key": "tsne_x", "title": "t-SNE x", "type": "continuous"}, {"key": "umap_x", "title": "UMAP x", "type": "continuous"}, {"key": "pca1", "title": "PCA 1", "type": "continuous"}, {"key": "tsne_y", "title": "t-SNE y", "type": "continuous"}, {"key": "pca_label_for_Nextstrain_clade", "title": "PCA cluster (Nextstrain clade)", "type": "categorical"}, {"key": "t-sne_label_for_Nextstrain_clade", "title": "t-SNE cluster (Nextstrain clade)", "type": "categorical"}, {"key": "mds3", "title": "MDS 3", "type": "continuous"}, {"key": "mds_label_for_Nextstrain_clade", "title": "MDS cluster (Nextstrain clade)", "type": "categorical"}, {"key": "Nextstrain_clade", "title": "Clade", "type": "categorical"}, {"key": "Nextclade_pango", "title": "Nextclade pango", "type": "categorical"}, {"key": "Nextclade_pango_collapsed", "title": "Nextclade pango (collapsed)", "type": "categorical"}], "filters": ["Nextstrain_clade", "Nextclade_pango_collapsed", "pca_label_for_Nextstrain_clade", "mds_label_for_Nextstrain_clade", "t-sne_label_for_Nextstrain_clade", "umap_label_for_Nextstrain_clade", "pca_label_for_Nextclade_pango_collapsed", "mds_label_for_Nextclade_pango_collapsed", "t-sne_label_for_Nextclade_pango_collapsed", "umap_label_for_Nextclade_pango_collapsed", "region", "country", "division"], "geo_resolutions": [{"key": "division", "demes": {"Oklahoma": {"latitude": 34.9550817, "longitude": -97.2684062}, "Utah": {"latitude": 39.4225192, "longitude": -111.7143583}, "Kansas": {"latitude": 38.27312, "longitude": -98.5821871}, "Idaho": {"latitude": 43.6447642, "longitude": -114.015407}, "New Jersey": {"latitude": 40.0757384, "longitude": -74.4041621}, "Nebraska": {"latitude": 41.7370229, "longitude": -99.5873815}, "Arkansas": {"latitude": 35.2048883, "longitude": -92.4479107}, "Tennessee": {"latitude": 35.7730076, "longitude": -86.282008}, "Minnesota": {"latitude": 45.9896587, "longitude": -94.6113287}, "Nevada": {"latitude": 39.5158825, "longitude": -116.8537226}, "Scotland": {"latitude": 56.7861112, "longitude": -4.1140517}, "Colorado": {"latitude": 38.7251776, "longitude": -105.6077166}, "Connecticut": {"latitude": 41.6500201, "longitude": -72.7342162}, "West Virginia": {"latitude": 38.4758406, "longitude": -80.8408414}, "New York": {"latitude": 40.7642499, "longitude": -73.9545249}, "Arizona": {"latitude": 34.395342, "longitude": -111.7632754}, "New Mexico": {"latitude": 34.5708167, "longitude": -105.9930069}, "Michigan": {"latitude": 43.6211955, "longitude": -84.6824345}, "Maryland": {"latitude": 39.5162234, "longitude": -76.9382068}, "Vermont": {"latitude": 44.5990718, "longitude": -72.5002607}, "Washington": {"latitude": 47.6, "longitude": -122.33}, "Ohio": {"latitude": 40.2253569, "longitude": -82.6881394}, "South Carolina": {"latitude": 33.6874388, "longitude": -80.4363742}, "Kentucky": {"latitude": 37.5726028, "longitude": -85.155141}, "Florida": {"latitude": 27.7567667, "longitude": -81.4639834}, "Oregon": {"latitude": 43.9792797, "longitude": -120.7372569}, "Montana": {"latitude": 47.3752671, "longitude": -109.6387578}, "Texas": {"latitude": 31.8160381, "longitude": -99.5120985}, "Delaware": {"latitude": 38.6920451, "longitude": -75.4013314}, "Iowa": {"latitude": 41.9216734, "longitude": -93.3122704}, "New Hampshire": {"latitude": 43.4718339, "longitude": -71.6182147}, "Massachusetts": {"latitude": 42.3788774, "longitude": -72.0323659}, "Mississippi": {"latitude": 32.9715645, "longitude": -89.7348496}, "Alaska": {"latitude": 64.4459613, "longitude": -149.6809089}, "Georgia": {"latitude": 32.3293809, "longitude": -83.1137365}, "California": {"latitude": 36.7014631, "longitude": -118.7559973}, "Wisconsin": {"latitude": 44.4308975, "longitude": -89.6884636}, "Alabama": {"latitude": 33.2588817, "longitude": -86.8295336}, "Illinois": {"latitude": 40.0796319, "longitude": -89.4339808}, "Pennsylvania": {"latitude": 40.9699889, "longitude": -77.727883}, "Indiana": {"latitude": 40.3270127, "longitude": -86.1746932}, "North Carolina": {"latitude": 35.6729639, "longitude": -79.0392918}}}, {"key": "country", "demes": {"South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Iraq": {"latitude": 33.0, "longitude": 44.0}, "Palestine": {"latitude": 31.5, "longitude": 34.46667}, "Bhutan": {"latitude": 27.5142, "longitude": 90.4336}, "Djibouti": {"latitude": 11.58901, "longitude": 43.14503}, "Ecuador": {"latitude": -1.3397667, "longitude": -79.3666964}, "South Korea": {"latitude": 35.3985008, "longitude": 127.937111}, "Morocco": {"latitude": 31.1728192, "longitude": -7.3366042}, "United Kingdom": {"latitude": 54.542713, "longitude": -2.384858}, "Argentina": {"latitude": -34.0, "longitude": -64.0}, "Mongolia": {"latitude": 46.8250388, "longitude": 103.8499736}, "China": {"latitude": 35.000074, "longitude": 104.999927}, "Seychelles": {"latitude": -4.58333, "longitude": 55.66667}, "Uruguay": {"latitude": -33.0, "longitude": -56.0}, "Tunisia": {"latitude": 36.81897, "longitude": 10.16579}, "Ghana": {"latitude": 8.0300284, "longitude": -1.080027}, "Russia": {"latitude": 64.6863136, "longitude": 97.7453061}, "Paraguay": {"latitude": -23.33333, "longitude": -58.0}, "Hong Kong": {"latitude": 22.3964, "longitude": 114.1095}, "Colombia": {"latitude": 2.893108, "longitude": -73.7845142}, "Iceland": {"latitude": 64.9841821, "longitude": -18.1059012}, "Nigeria": {"latitude": 10.0, "longitude": 8.0}, "Estonia": {"latitude": 59.0, "longitude": 26.0}, "Lebanon": {"latitude": 33.88894, "longitude": 35.49442}, "Germany": {"latitude": 51.0834196, "longitude": 10.4234469}, "Gabon": {"latitude": -0.8999694, "longitude": 11.6899699}, "Egypt": {"latitude": 26.2540493, "longitude": 29.2675469}, "India": {"latitude": 22.3511148, "longitude": 78.6677428}, "Mexico": {"latitude": 19.4325301, "longitude": -99.1332101}, "Laos": {"latitude": 20.0171109, "longitude": 103.378253}, "Peru": {"latitude": -10.0, "longitude": -75.25}, "Benin": {"latitude": 9.668764, "longitude": 2.284078}, "Armenia": {"latitude": 40.18111, "longitude": 44.51361}, "France": {"latitude": 46.603354, "longitude": 1.8883335}, "Kazakhstan": {"latitude": 47.2286086, "longitude": 65.2093197}, "Venezuela": {"latitude": 8.0, "longitude": -66.0}, "Sierra Leone": {"latitude": 8.5, "longitude": -11.5}, "Gambia": {"latitude": 13.5, "longitude": -15.5}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Saudi Arabia": {"latitude": 25.0, "longitude": 45.0}, "Uganda": {"latitude": 1.5333554, "longitude": 32.2166578}, "Sweden": {"latitude": 59.6749712, "longitude": 14.5208584}, "New Zealand": {"latitude": -41.500083, "longitude": 172.8344077}, "Vietnam": {"latitude": 16.16667, "longitude": 107.83333}, "Kenya": {"latitude": 1.0, "longitude": 38.0}, "Philippines": {"latitude": 12.8797, "longitude": 121.774}, "Finland": {"latitude": 63.2467777, "longitude": 25.9209164}, "Bahrain": {"latitude": 26.22787, "longitude": 50.58565}, "Greece": {"latitude": 39.0, "longitude": 22.0}, "Switzerland": {"latitude": 47.00016, "longitude": 8.01427}, "Jordan": {"latitude": 31.1667049, "longitude": 36.941628}, "Malawi": {"latitude": -13.550995, "longitude": 34.124594}, "Pakistan": {"latitude": 30.0, "longitude": 70.0}, "Malaysia": {"latitude": 2.3923759, "longitude": 112.8471939}, "USA": {"latitude": 39.7837304, "longitude": -100.4458824}, "Tanzania": {"latitude": -6.0, "longitude": 35.0}, "Japan": {"latitude": 35.68536, "longitude": 139.75309}, "Thailand": {"latitude": 14.8971921, "longitude": 100.83273}, "Israel": {"latitude": 31.5, "longitude": 34.75}, "Denmark": {"latitude": 56.0, "longitude": 10.0}, "Taiwan": {"latitude": 23.6978, "longitude": 120.9605}, "Australia": {"latitude": -24.7761085, "longitude": 134.755}, "Bangladesh": {"latitude": 24.4768783, "longitude": 90.2932426}}}, {"key": "region", "demes": {"Oceania": {"latitude": -25.0562891, "longitude": 152.008576}, "Africa": {"latitude": 4.070194, "longitude": 21.824559}, "South America": {"latitude": -13.083583, "longitude": -58.470721}, "Europe": {"latitude": 49.646237, "longitude": 10.799454}, "North America": {"latitude": 28.2367447, "longitude": -97.738017}}}], "panels": ["tree"]}, "tree": {"name": "NODE_0000003", "node_attrs": {"div": 0, "num_date": {"value": 2019.8731524886682, "confidence": [2019.765486882719, 2019.928270781219]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Wuhan-Hu-1/2019", "node_attrs": {"div": 0, "num_date": {"value": 2019.9849315068493, "confidence": [2019.9849315068493, 2019.9849315068493]}, "tsne_x": {"value": -2.200271089619904}, "umap_x": {"value": 7.036308}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.2125862}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.947689762095623}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.52582148016308}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.955037912427829}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "China"}, "mds2": {"value": -2.4664473475171467}, "mds3": {"value": 0.4228216753920315}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.975592157046865}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000001", "node_attrs": {"div": 0, "num_date": {"value": 2019.8893700754636, "confidence": [2019.7755501866823, 2019.9331746708729]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000687", "node_attrs": {"div": 1, "num_date": {"value": 2019.9786347396496, "confidence": [2019.9390886388258, 2020.0160242246527]}}, "branch_attrs": {"mutations": {"nuc": ["T28144C"]}}, "children": [{"name": "OM065348", "node_attrs": {"div": 4, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -1.6411176085309396}, "umap_x": {"value": 6.0055275}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.9993143}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.943711155244598}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.06408060584308}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.58186390415733}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Anhui"}, "mds2": {"value": -6.095016899070615}, "mds3": {"value": 1.2359777302346795}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.977520056474813}}, "branch_attrs": {"mutations": {"nuc": ["T8022G", "A11430G", "C25156T"]}}}, {"name": "NODE_0000688", "node_attrs": {"div": 2, "num_date": {"value": 2020.0047054554252, "confidence": [2019.9752694631734, 2020.0282079495785]}}, "branch_attrs": {"mutations": {"nuc": ["C8782T"]}}, "children": [{"name": "NODE_0000031", "node_attrs": {"div": 2, "num_date": {"value": 2020.009664881486, "confidence": [2019.981617477105, 2020.031720437743]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000033", "node_attrs": {"div": 2, "num_date": {"value": 2020.0251590612038, "confidence": [2019.9942357156306, 2020.041602114294]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GBR/SARS-CoV-2Engl2/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -1.186202381507229}, "umap_x": {"value": 5.9221287}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0454504}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.988129901662214}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.20054001112625}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.764770941937142}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "United Kingdom"}, "mds2": {"value": -8.173599608598016}, "mds3": {"value": 1.2323437060041524}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.14741731740254}}, "branch_attrs": {"mutations": {"nuc": ["T18488C", "T23605G", "A29596G"]}}}, {"name": "USA/AZ-CDC-02993465-001/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.058743169399, "confidence": [2020.058743169399, 2020.058743169399]}, "tsne_x": {"value": -1.4994508919331455}, "umap_x": {"value": 6.0980296}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.964665}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.853993385943365}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.189672026776613}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.252139629653117}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Arizona"}, "mds2": {"value": -6.134555063821277}, "mds3": {"value": 1.3360327383192427}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.70926786981662}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "C29095T"]}}}]}, {"name": "NODE_0000036", "node_attrs": {"div": 2, "num_date": {"value": 2020.0167960935132, "confidence": [2019.9904627513824, 2020.037263408041]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKU-001a/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.058743169399, "confidence": [2020.058743169399, 2020.058743169399]}, "tsne_x": {"value": -0.9054131447754818}, "umap_x": {"value": 5.2119293}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1434672}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.883427582189118}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -24.640593120299897}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.07495993148652}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -10.245873598913718}, "mds3": {"value": 1.2863065730270808}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.628000354001358}}, "branch_attrs": {"mutations": {"nuc": ["C1663T", "G22661T", "C24034T", "T26729C", "G28077C"], "S": ["V367F"]}, "labels": {"aa": "S: V367F"}}}, {"name": "NODE_0000706", "node_attrs": {"div": 4, "num_date": {"value": 2020.0561487321631, "confidence": [2020.0327091508007, 2020.0751366120219]}}, "branch_attrs": {"mutations": {"nuc": ["T4402C", "G5062T"]}}, "children": [{"name": "CHN/Hefei-667/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.1379781420765, "confidence": [2020.1379781420765, 2020.1379781420765]}, "tsne_x": {"value": -0.86378456586872}, "umap_x": {"value": 3.7885084}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.987851}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.942774553407895}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -24.17042962801869}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.051103568574849}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "China"}, "mds2": {"value": -16.077270649994908}, "mds3": {"value": 2.2177854348030657}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.976913926214884}}, "branch_attrs": {"mutations": {"nuc": ["G1440A", "T3026C", "C5183T", "A9280G", "T21274C", "A25101G", "C27208T"], "S": ["Q1180R"]}, "labels": {"aa": "S: Q1180R"}}}, {"name": "CHN/235/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0751366120219, "confidence": [2020.0751366120219, 2020.0751366120219]}, "tsne_x": {"value": -1.1956678367116504}, "umap_x": {"value": 6.1062946}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.9678044}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.943775469746224}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.057689006586145}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.997353174544383}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Beijing"}, "mds2": {"value": -6.399426208953441}, "mds3": {"value": 0.9917565317510636}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.980906141361874}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000038", "node_attrs": {"div": 2, "num_date": {"value": 2020.0081251418728, "confidence": [2019.9869555227147, 2020.0328032064872]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC13/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0833333333333, "confidence": [2020.0833333333333, 2020.0833333333333]}, "tsne_x": {"value": -1.216235672242135}, "umap_x": {"value": 6.5533247}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.6381564}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.9828881015287176}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.16911749063172}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.80203392212505}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -7.623617924519321}, "mds3": {"value": -0.0399833974569894}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.274978193294418}}, "branch_attrs": {"mutations": {"nuc": ["A2476G", "C29743T"]}}}, {"name": "NODE_0000041", "node_attrs": {"div": 2, "num_date": {"value": 2020.016670349229, "confidence": [2019.9929382050868, 2020.0322734660035]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000717", "node_attrs": {"div": 3, "num_date": {"value": 2020.0253797982814, "confidence": [2020.0149644894027, 2020.0400785132672]}}, "branch_attrs": {"mutations": {"nuc": ["C18060T"]}}, "children": [{"name": "CHN/CN4/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.0696721311476, "confidence": [2020.0696721311476, 2020.0696721311476]}, "tsne_x": {"value": -0.7805182585806992}, "umap_x": {"value": 5.4478393}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1410577}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.285037090591606}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.00613254866654}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.294984544183608}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Zhejiang"}, "mds2": {"value": -10.821542508172316}, "mds3": {"value": 1.388502225717789}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.411066862987624}}, "branch_attrs": {"mutations": {"nuc": ["C2485T", "T3380C", "T9370G", "T13954G"]}}}, {"name": "CHN/Shanghai_CH-03/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.061475409836, "confidence": [2020.061475409836, 2020.061475409836]}, "tsne_x": {"value": -0.8917329527916426}, "umap_x": {"value": 5.735734}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0753593}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.845484938590126}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.10182302289392}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.24619805168968}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "China"}, "mds2": {"value": -8.127047578094604}, "mds3": {"value": 1.2294028266914616}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.39285461810307}}, "branch_attrs": {"mutations": {"nuc": ["C18029T", "C25487T", "A29884G", "A29888G"]}}}, {"name": "USA/WA1_vero_stock/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_x": {"value": -1.060860595346236}, "umap_x": {"value": 6.1813025}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.9755194}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.87834478869707}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.087060218625226}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.726955416291533}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -6.429345080192067}, "mds3": {"value": 1.1362286657805691}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.431313597259877}}, "branch_attrs": {"mutations": {"nuc": ["A22296G"], "S": ["H245R"]}, "labels": {"aa": "S: H245R"}}}, {"name": "NODE_0000016", "node_attrs": {"div": 3, "num_date": {"value": 2020.0349784203836, "confidence": [2020.0205572316727, 2020.0486141602953]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0363146279785, 2020.0505464480875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA1_calu3_stock/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_x": {"value": -1.1654491322797136}, "umap_x": {"value": 6.572801}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.7155924}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.88060935187604}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.05917117429907}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.157854919784565}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -5.167006610277093}, "mds3": {"value": 1.1567947638722165}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.432809110255235}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/WA-CDC-WA1/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_x": {"value": -1.1401115451951391}, "umap_x": {"value": 6.3566008}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.8428721}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.61805945743986}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.06925476145602}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.306788639249486}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "USA"}, "mds2": {"value": -5.263442682256977}, "mds3": {"value": 0.905241502267188}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.901988013853604}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000043", "node_attrs": {"div": 3, "num_date": {"value": 2020.049118442748, "confidence": [2020.0344332439295, 2020.0592961527057]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-02982585-001/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_x": {"value": -1.1472185978418896}, "umap_x": {"value": 6.725354}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.6353183}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.854798920555422}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.077110136786573}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.952109567379692}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -5.312334743608965}, "mds3": {"value": 1.0507903245899162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.70316213048009}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000044", "node_attrs": {"div": 3, "num_date": {"value": 2020.0577859227215, "confidence": [2020.0421164105246, 2020.0604417486354]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000045", "node_attrs": {"div": 3, "num_date": {"value": 2020.2003197057002, "confidence": [2020.1224177799097, 2020.2035519125684]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NYP-WCM-COVSUBJ_0461_1_N/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.2035519125684, "confidence": [2020.2035519125684, 2020.2035519125684]}, "tsne_x": {"value": -1.1338001266185131}, "umap_x": {"value": 6.338343}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.8349774}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.613809320187049}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.07779599598128}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.469728222510096}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "USA"}, "mds2": {"value": -5.32354427617697}, "mds3": {"value": 0.9642318121619152}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.823598723285848}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC359/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.2226775956285, "confidence": [2020.2226775956285, 2020.2226775956285]}, "tsne_x": {"value": -0.9360353392074772}, "umap_x": {"value": 6.561889}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.6464782}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.1414653621372564}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.069669574806127}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.597859777189344}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -7.693978096394232}, "mds3": {"value": 0.0581440270115221}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.97613579145282}}, "branch_attrs": {"mutations": {"nuc": ["C17010T"]}}}]}, {"name": "NODE_0000046", "node_attrs": {"div": 3, "num_date": {"value": 2020.0586908196728, "confidence": [2020.0469717539875, 2020.0669398907103]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-WA1-F6/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_x": {"value": -1.1586001953675755}, "umap_x": {"value": 6.743063}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.6152706}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.854798920555422}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.068376304838896}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.4060113780095005}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -5.279127096824379}, "mds3": {"value": 1.0723685034531012}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.70316213048009}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000726", "node_attrs": {"div": 5, "num_date": {"value": 2020.1069491005512, "confidence": [2020.0723111292168, 2020.1324393855812]}}, "branch_attrs": {"mutations": {"nuc": ["C17747T", "A17858G"]}}, "children": [{"name": "USA/OR-S90/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_x": {"value": -0.5879167045992195}, "umap_x": {"value": 5.547296}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.131702}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.352819555685066}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.00008102040606}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.584958106791617}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Oregon"}, "mds2": {"value": -11.485261748636116}, "mds3": {"value": 0.629925946483808}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.580849148885225}}, "branch_attrs": {"mutations": {"nuc": ["C15240T", "C21774T"], "S": ["S71F"]}, "labels": {"aa": "S: S71F"}}}, {"name": "USA/WA-S81/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1543715846994, "confidence": [2020.1543715846994, 2020.1543715846994]}, "tsne_x": {"value": -0.6811044007600252}, "umap_x": {"value": 5.550904}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1368237}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.429925998477998}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.02491945681046}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.616990363306185}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -8.932209442313885}, "mds3": {"value": 1.2810159075997176}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.829408309210995}}, "branch_attrs": {"mutations": {"nuc": ["A4494G"]}}}, {"name": "NODE_0000052", "node_attrs": {"div": 5, "num_date": {"value": 2020.116199670517, "confidence": [2020.0848057891408, 2020.1381474623672]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S30/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_x": {"value": -0.787827588439001}, "umap_x": {"value": 6.3745313}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.8956456}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.905466444399651}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -24.98049827276823}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.594302445824814}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -6.600411380921963}, "mds3": {"value": 1.9526042243355195}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.128412521216209}}, "branch_attrs": {"mutations": {"nuc": ["C1326T", "C17304T"]}}}, {"name": "NODE_0000055", "node_attrs": {"div": 5, "num_date": {"value": 2020.1242549326698, "confidence": [2020.0947014099133, 2020.1444203915983]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S254/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1489071038252, "confidence": [2020.1489071038252, 2020.1489071038252]}, "tsne_x": {"value": -0.6719083606919054}, "umap_x": {"value": 5.5327487}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1353683}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.361465991280896}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.02465544165827}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.1689205420738}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -8.83720611360551}, "mds3": {"value": 1.4204365286404224}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.58898989206237}}, "branch_attrs": {"mutations": {"nuc": ["C5784T"]}}}, {"name": "NODE_0000057", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.130342769195, 2020.1571038251366]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S43/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -0.7789328100415399}, "umap_x": {"value": 5.859621}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0475106}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.079725697695931}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.04049629831728}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.760747418555049}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -7.631130986295098}, "mds3": {"value": 1.197207383070605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.430253579865258}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000058", "node_attrs": {"div": 5, "num_date": {"value": 2020.1994596086445, "confidence": [2020.1516616250053, 2020.242037464315]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-2476/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.285519125683, "confidence": [2020.285519125683, 2020.285519125683]}, "tsne_x": {"value": -0.361851032501654}, "umap_x": {"value": 5.179077}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1512218}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.000482673349492}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -24.95533865274077}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.275941136739814}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "California"}, "mds2": {"value": -11.439547372957438}, "mds3": {"value": 3.763403953214503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.106573917965658}}, "branch_attrs": {"mutations": {"nuc": ["A479G", "C13968T", "G25440T", "T28078C"]}}}, {"name": "NODE_0000061", "node_attrs": {"div": 5, "num_date": {"value": 2020.2403868312133, "confidence": [2020.1811678236656, 2020.351471259705]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG371288/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3811475409836, "confidence": [2020.3811475409836, 2020.3811475409836]}, "tsne_x": {"value": -0.5948998441649419}, "umap_x": {"value": 5.246433}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1219976}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.888247651063179}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.006072440526584}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.02049253550102}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Arizona"}, "mds2": {"value": -9.901626368739633}, "mds3": {"value": 1.6787115167071838}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.745206723389793}}, "branch_attrs": {"mutations": {"nuc": ["C4683T", "G8653T", "C10408T"]}}}, {"name": "NODE_0000062", "node_attrs": {"div": 5, "num_date": {"value": 2020.2634195670046, "confidence": [2020.1968448637338, 2020.3620218579235]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-UPHL-2009035/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -0.3883003937631801}, "umap_x": {"value": 4.4021363}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0771353}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.032965490677468}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -24.95793601466869}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.738128239381131}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "USA"}, "mds2": {"value": -12.787966282024218}, "mds3": {"value": 1.8940943545230096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.1470759539635845}}, "branch_attrs": {"mutations": {"nuc": ["G22331A", "T23287C", "A24694T", "G26227A"], "S": ["G257S"]}, "labels": {"aa": "S: G257S"}}}, {"name": "USA/WA-S2437/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.457650273224, "confidence": [2020.457650273224, 2020.457650273224]}, "tsne_x": {"value": -0.7880893675392449}, "umap_x": {"value": 6.011272}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0169919}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.804317104219039}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.04127922008762}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.266149958779245}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -7.6565392750764625}, "mds3": {"value": 1.516227242683008}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.326640173165352}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000063", "node_attrs": {"div": 2, "num_date": {"value": 2020.0262837075047, "confidence": [2020.0030381522945, 2020.049532951756]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000710", "node_attrs": {"div": 8, "num_date": {"value": 2020.1700207513152, "confidence": [2020.1329801141994, 2020.193430078336]}}, "branch_attrs": {"mutations": {"nuc": ["A895G", "C2942T", "G4390T", "C9598T", "G20134T", "G24047A"], "S": ["A829T"]}, "labels": {"aa": "S: A829T"}}, "children": [{"name": "THA/CONI-0132/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1953551912568, "confidence": [2020.1953551912568, 2020.1953551912568]}, "tsne_x": {"value": -1.6013010017435911}, "umap_x": {"value": 5.1510134}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1580026}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.3073882957403939}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -26.283489271008587}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.925137826424344}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Bangkok"}, "mds2": {"value": -11.483352246771048}, "mds3": {"value": 3.4652848087945936}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 14.801090123206798}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000711", "node_attrs": {"div": 9, "num_date": {"value": 2020.1951249058154, "confidence": [2020.16484749267, 2020.2016545334686]}}, "branch_attrs": {"mutations": {"nuc": ["G27877T"]}}, "children": [{"name": "THA/CONI-0308/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2062841530055, "confidence": [2020.2062841530055, 2020.2062841530055]}, "tsne_x": {"value": -1.674671079719061}, "umap_x": {"value": 4.054526}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.982339}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.840117985314011}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -26.40389023007894}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.19967523299258}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Bangkok"}, "mds2": {"value": -14.717240563881289}, "mds3": {"value": 2.141932851793744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.06400902237386}}, "branch_attrs": {"mutations": {"nuc": ["C29245T"]}}}, {"name": "THA/CONI-0150/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2035519125684, "confidence": [2020.2035519125684, 2020.2035519125684]}, "tsne_x": {"value": -1.6751840579783008}, "umap_x": {"value": 4.3535357}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0703416}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 29.678722510893465}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -26.40174807759257}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 11.78201634307901}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Bangkok"}, "mds2": {"value": -14.815835718232243}, "mds3": {"value": 3.31440748489895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 8.821038699642228}}, "branch_attrs": {"mutations": {"nuc": ["A21215G"]}}}]}]}, {"name": "NODE_0000067", "node_attrs": {"div": 2, "num_date": {"value": 2020.0336489237322, "confidence": [2020.0139539815596, 2020.0535188357387]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000068", "node_attrs": {"div": 2, "num_date": {"value": 2020.050298356085, "confidence": [2020.0144317178408, 2020.058743169399]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/WHUHnCoV011/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.058743169399, "confidence": [2020.058743169399, 2020.058743169399]}, "tsne_x": {"value": -1.402569299747094}, "umap_x": {"value": 6.842913}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.509872}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.9476951497608015}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.01433518986754}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.188013852982562}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "China"}, "mds2": {"value": -4.158654439951914}, "mds3": {"value": 0.9517743181186156}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.980924375083987}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000713", "node_attrs": {"div": 7, "num_date": {"value": 2020.1552061281814, "confidence": [2020.0848138976758, 2020.1773496463004]}}, "branch_attrs": {"mutations": {"nuc": ["T9477A", "C14805T", "G25979T", "C28657T", "C28863T"]}}, "children": [{"name": "VEN/1Z/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.2062841530055, "confidence": [2020.2062841530055, 2020.2062841530055]}, "tsne_x": {"value": -0.1602133164934815}, "umap_x": {"value": 3.7816417}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.9163463}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.766113687928476}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -23.95451975713328}, "country": {"value": "Venezuela"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.76603814981926}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Venezuela"}, "mds2": {"value": -16.42168036758957}, "mds3": {"value": 2.2625508803171503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.586406445762297}}, "branch_attrs": {"mutations": {"nuc": ["T1116C", "A15498G", "G23516A", "G23724T"], "S": ["G652R", "S721I"]}, "labels": {"aa": "S: G652R, S721I"}}}, {"name": "NODE_0000070", "node_attrs": {"div": 7, "num_date": {"value": 2020.1549857369428, "confidence": [2020.0945672839662, 2020.2122521360996]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102905_58287/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_x": {"value": -0.0084355639272895}, "umap_x": {"value": 1.6884878}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -1.6631143}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.403745479389141}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.2.5.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -23.73322276911005}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 33.147380279524285}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Paraguay"}, "mds2": {"value": 25.78338672246993}, "mds3": {"value": 25.96072828392193}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -9.690307378815342}}, "branch_attrs": {"mutations": {"nuc": ["C275T", "C1567T", "C4543T", "A5234G", "A5488G", "C10029T", "C11005A", "G11146T", "C12815T", "T15326C", "C16466T", "T16857C", "T18417C", "T21983-", "T21984-", "G21985-", "G21986-", "G21987-", "T21988-", "G21989-", "T21990-", "T21991-", "A22525G", "T22917G", "A23403G", "G24697A", "C25613T", "C26681T", "G27706T", "T28224A", "T28226C", "T28240C", "A28272T", "G28975T", "C29366T", "C29421T"], "S": ["L141-", "G142-", "V143-", "L452R", "D614G"]}, "labels": {"aa": "S: L141-, G142-, V143-, L452R, D614G"}}}, {"name": "NODE_0000715", "node_attrs": {"div": 11, "num_date": {"value": 2020.2718114377271, "confidence": [2020.245217004796, 2020.2718579234972]}}, "branch_attrs": {"mutations": {"nuc": ["C4540T", "A4624G", "G26062T", "C28311T"]}}, "children": [{"name": "AUS/TAS189/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3128415300546, "confidence": [2020.3128415300546, 2020.3128415300546]}, "tsne_x": {"value": -0.0671864901376692}, "umap_x": {"value": 4.089179}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.988355}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.054970931045505}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -23.851037958113903}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.051423563251443}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Tasmania"}, "mds2": {"value": -18.706167423214456}, "mds3": {"value": -1.821787650659162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.333112357826398}}, "branch_attrs": {"mutations": {"nuc": ["C5986T"]}}}, {"name": "AUS/TAS01/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.2745901639344, "confidence": [2020.2745901639344, 2020.2745901639344]}, "tsne_x": {"value": -0.0810106826417437}, "umap_x": {"value": 4.106925}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.013814}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.7336837194135002}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -23.86600515508697}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.314251517876205}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Tasmania"}, "mds2": {"value": -17.267067014856384}, "mds3": {"value": 0.8661559180549253}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.09730479379291}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/TAS68/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.2718579234972, "confidence": [2020.2718579234972, 2020.2718579234972]}, "tsne_x": {"value": -0.080692295403723}, "umap_x": {"value": 4.223635}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0315783}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.181040828418079}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -23.86566852106405}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.615604033433442}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Tasmania"}, "mds2": {"value": 10.038918209882173}, "mds3": {"value": 3.960441561149232}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.270826872366456}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000689", "node_attrs": {"div": 4, "num_date": {"value": 2020.0713193114557, "confidence": [2020.0344012824175, 2020.0901198681922]}}, "branch_attrs": {"mutations": {"nuc": ["G28878A", "G29742A"]}}, "children": [{"name": "NODE_0000696", "node_attrs": {"div": 6, "num_date": {"value": 2020.3209297795129, "confidence": [2020.1624394580601, 2020.360897869176]}}, "branch_attrs": {"mutations": {"nuc": ["G11230T", "G28167A"]}}, "children": [{"name": "KEN/C6524/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -0.8664069561292232}, "umap_x": {"value": 5.53999}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1202323}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.63977519335196}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -26.07303271497905}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.629993998156776}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Kenya"}, "mds2": {"value": -9.26371009191817}, "mds3": {"value": 2.9503256089255854}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.6041833436811591}}, "branch_attrs": {"mutations": {"nuc": ["G27706T"]}}}, {"name": "NODE_0000086", "node_attrs": {"div": 6, "num_date": {"value": 2020.3312477705244, "confidence": [2020.1778074027925, 2020.401053322931]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/K10186/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_x": {"value": -0.9089069287758808}, "umap_x": {"value": 4.7916636}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1033838}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.48857363509236}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -26.1671581386802}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.425824407944964}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Kenya"}, "mds2": {"value": -13.12400078962056}, "mds3": {"value": 2.8906163259310538}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 5.352842322844404}}, "branch_attrs": {"mutations": {"nuc": ["C4320T", "G8017T", "T27935C", "C29666T", "A29723-", "C29724-", "A29725-", "T29726-", "T29727-", "T29728-", "T29729-", "C29730-", "A29731-", "C29732-", "C29733-", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "A29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-", "A29763-", "G29764-", "T29765-", "G29766-", "A29767-"]}}}, {"name": "NODE_0000087", "node_attrs": {"div": 6, "num_date": {"value": 2020.3602701791956, "confidence": [2020.1825154870967, 2020.4976781330686]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C29517/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.5122950819673, "confidence": [2020.5122950819673, 2020.5122950819673]}, "tsne_x": {"value": -0.8595353442283358}, "umap_x": {"value": 5.4358945}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1182132}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 16.13426554883374}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -26.188973117411702}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.861905600629749}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Kenya"}, "mds2": {"value": -11.394476425814098}, "mds3": {"value": 5.952317512429456}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 4.920552676085574}}, "branch_attrs": {"mutations": {"nuc": ["C5544T", "A11908G", "A23476T"]}}}, {"name": "NODE_0000088", "node_attrs": {"div": 6, "num_date": {"value": 2020.411490620824, "confidence": [2020.175215056515, 2020.503021800744]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UZB/hCoV-19-Uzb-CGB-03/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_x": {"value": -0.8301521378418599}, "umap_x": {"value": 4.2122664}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0248172}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.472498595834582}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -26.31444453952124}, "country": {"value": "Uzbekistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.513890235878172}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Tashkent"}, "mds2": {"value": 0.1534964404797195}, "mds3": {"value": 10.621355045214194}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.4912024702935127}}, "branch_attrs": {"mutations": {"nuc": ["A3985T", "G20580T", "A23403C", "C26028T", "G26185T", "C26681T", "C28887T"], "S": ["D614A"]}, "labels": {"aa": "S: D614A"}}}, {"name": "NODE_0000700", "node_attrs": {"div": 17, "num_date": {"value": 2020.7244583754189, "confidence": [2020.5949622639434, 2020.8113881367422]}}, "branch_attrs": {"mutations": {"nuc": ["C4573T", "C10747T", "G11266T", "C16575T", "C17745T", "C22000T", "C22033A", "G22661T", "G23401T", "T24097C", "G28378C"], "S": ["F157L", "V367F", "Q613H"]}, "labels": {"aa": "S: F157L, V367F, Q613H"}}, "children": [{"name": "KEN/C67500/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.8237704918033, "confidence": [2020.8237704918033, 2020.8237704918033]}, "tsne_x": {"value": -0.6920262652002477}, "umap_x": {"value": 1.840176}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -1.9100229}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.294217317469806}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.23"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -27.05819588516617}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.996480944107272}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Kenya"}, "mds2": {"value": -24.02560628172201}, "mds3": {"value": 10.938277854057404}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 0.7954747887469855}}, "branch_attrs": {"mutations": {"nuc": ["A1393G", "A2467G", "A8031G", "C17339T"]}}}, {"name": "NODE_0000701", "node_attrs": {"div": 19, "num_date": {"value": 2020.8400224268266, "confidence": [2020.6875458366012, 2020.964080463274]}}, "branch_attrs": {"mutations": {"nuc": ["G11521T", "C23604G"], "S": ["P681R"]}, "labels": {"aa": "S: P681R"}}, "children": [{"name": "NZL/21MV0066/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.1054794520549, "confidence": [2021.1054794520549, 2021.1054794520549]}, "tsne_x": {"value": -0.6841643350382862}, "umap_x": {"value": 1.8306881}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -1.8822706}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.992637526021727}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.23.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -27.093013840588466}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.093864067614227}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "New Zealand"}, "mds2": {"value": -25.675126939682592}, "mds3": {"value": 15.701634052617552}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.2018567013521054}}, "branch_attrs": {"mutations": {"nuc": ["A624T", "A1307G", "T6892C", "G11108T", "G19962T", "G21867T"], "S": ["R102I"]}, "labels": {"aa": "S: R102I"}}}, {"name": "KEN/C86907/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.1931506849314, "confidence": [2021.1931506849314, 2021.1931506849314]}, "tsne_x": {"value": -0.6780913372795367}, "umap_x": {"value": 1.6636887}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -1.744486}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.4191252350324777}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.23.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -27.12366852503484}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.82645362678447}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Kenya"}, "mds2": {"value": 32.32529728640488}, "mds3": {"value": 9.772146474879658}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 0.597987421433333}}, "branch_attrs": {"mutations": {"nuc": ["G529A", "C1060T", "G3259T", "G5942A", "C6582T", "T23698A", "C27453T", "G28881A"]}}}]}]}]}]}]}]}, {"name": "NODE_0000047", "node_attrs": {"div": 4, "num_date": {"value": 2020.0772866138245, "confidence": [2020.03743805925, 2020.098790263221]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC07/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1051912568305, "confidence": [2020.1051912568305, 2020.1051912568305]}, "tsne_x": {"value": -0.9179244308714314}, "umap_x": {"value": 6.447758}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.757117}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.5579461217746244}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.679506483608584}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.155355761073284}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -8.672380545985419}, "mds3": {"value": 0.7197737187406837}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.2740036970385382}}, "branch_attrs": {"mutations": {"nuc": ["C10038T"]}}}, {"name": "NODE_0000690", "node_attrs": {"div": 5, "num_date": {"value": 2020.1072301331117, "confidence": [2020.0387745054272, 2020.1543831361168]}}, "branch_attrs": {"mutations": {"nuc": ["G22468T"]}}, "children": [{"name": "SLE/KGH-G-8625/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.2745901639344, "confidence": [2020.2745901639344, 2020.2745901639344]}, "tsne_x": {"value": -0.3301646739634069}, "umap_x": {"value": 2.7321}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.534264}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.405352465769648}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.99007801920869}, "country": {"value": "Sierra Leone"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.975536865847833}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Sierra Leone"}, "mds2": {"value": -19.482375785464395}, "mds3": {"value": 6.016888496621896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.06916242028618}}, "branch_attrs": {"mutations": {"nuc": ["A6T", "G315T", "C8950T", "G9802A", "C10818T", "C14184T", "A16512G", "C19951T", "G24992C", "G26428T"], "S": ["E1144Q"]}, "labels": {"aa": "S: E1144Q"}}}, {"name": "NODE_0000075", "node_attrs": {"div": 5, "num_date": {"value": 2020.1336594433692, "confidence": [2020.042706075073, 2020.208069746807]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV18-1/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2418032786886, "confidence": [2020.2418032786886, 2020.2418032786886]}, "tsne_x": {"value": -0.714133178085724}, "umap_x": {"value": 4.4799147}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0979338}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.1762395287466605}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.970922740549582}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.867479068990583}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Nigeria"}, "mds2": {"value": -13.068610748893397}, "mds3": {"value": 5.6158745428138666}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.948955253967782}}, "branch_attrs": {"mutations": {"nuc": ["A2550G", "T9880C", "C15857T", "C20081T", "G29705T"]}}}, {"name": "NODE_0000081", "node_attrs": {"div": 5, "num_date": {"value": 2020.195447231627, "confidence": [2019.9816285985432, 2020.233821027876]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV14-1/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2418032786886, "confidence": [2020.2418032786886, 2020.2418032786886]}, "tsne_x": {"value": -0.7918576937369948}, "umap_x": {"value": 5.6025233}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.1605644}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.255434445826388}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.86245530013579}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.718141565956078}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Nigeria"}, "mds2": {"value": -9.84510420215232}, "mds3": {"value": 3.095996366076993}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.34706303512156}}, "branch_attrs": {"mutations": {"nuc": ["G3371T", "T11398C"]}}}, {"name": "NODE_0000083", "node_attrs": {"div": 5, "num_date": {"value": 2020.2150598082792, "confidence": [2019.985145570855, 2020.2452851448716]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV039252", "node_attrs": {"div": 6, "num_date": {"value": 2020.2636612021859, "confidence": [2020.2636612021859, 2020.2636612021859]}, "tsne_x": {"value": -0.7822952153599241}, "umap_x": {"value": 5.952287}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -3.0555823}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.896041744248457}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.825608525767603}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.333589632235444}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Makkah"}, "mds2": {"value": -8.656394066965815}, "mds3": {"value": 2.37734944471402}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.95371029474636}}, "branch_attrs": {"mutations": {"nuc": ["A29752G"]}}}, {"name": "NODE_0000084", "node_attrs": {"div": 5, "num_date": {"value": 2020.224043032634, "confidence": [2019.986349332744, 2020.2603973719574]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GMB/9418/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_x": {"value": 0.0178692061128627}, "umap_x": {"value": 1.6300663}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -1.665214}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.81938285954078}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A.27"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.84225563448012}, "country": {"value": "Gambia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -34.405347729767016}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Gambia"}, "mds2": {"value": -4.933612972392708}, "mds3": {"value": -22.45227754547734}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 0.0656289849973087}}, "branch_attrs": {"mutations": {"nuc": ["A361G", "C1122T", "C2509T", "G2599A", "C5144T", "A5533G", "A9204G", "A11217G", "C16293T", "C16466T", "A18366G", "A20262G", "C21614T", "G21753T", "T22917G", "A23063T", "C23520T", "C23525T", "G23948T", "G25218T", "G25477T", "T25541C", "A26161-", "A26162-", "T26163-", "C26164-", "C26165-", "A26166-", "G26167-", "T26168-", "C27247T", "A27388-", "G28248-", "A28249-", "T28250-", "T28251-", "T28252-", "C28253-", "A28273T"], "S": ["L18F", "W64L", "L452R", "N501Y", "A653V", "H655Y", "D796Y", "G1219V"]}, "labels": {"aa": "S: L18F, W64L, L452R, N501Y, A653V, H655Y, D796Y, G1219V"}}}, {"name": "IND/ILS21/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3428961748634, "confidence": [2020.3428961748634, 2020.3428961748634]}, "tsne_x": {"value": -0.5619648839084903}, "umap_x": {"value": 3.8416202}, "Nextstrain_clade": {"value": "19B"}, "umap_y": {"value": -2.9840775}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.62364917941811}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "A"}, "tsne_y": {"value": -25.969236250162627}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.150522597081949}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "India"}, "mds2": {"value": -16.46027014580165}, "mds3": {"value": 4.935056580587635}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.075989770868176}}, "branch_attrs": {"mutations": {"nuc": ["G3729A", "C5869T", "C7321T", "A10323G", "A23014T", "T26354A", "A27691G"], "S": ["E484D"]}, "labels": {"aa": "S: E484D"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000065", "node_attrs": {"div": 0, "num_date": {"value": 2019.9777591733643, "confidence": [2019.9490714320254, 2020.034865511913]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000004", "node_attrs": {"div": 0, "num_date": {"value": 2020.0082462198825, "confidence": [2019.9763471148551, 2020.0400894101747]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000672", "node_attrs": {"div": 1, "num_date": {"value": 2020.0252226341897, "confidence": [2020.0085218980964, 2020.069326544064]}}, "branch_attrs": {"mutations": {"nuc": ["C28854T"]}}, "children": [{"name": "USA/MA-CDC-03038398-001/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -1.809763301978192}, "umap_x": {"value": 6.0578804}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.9842281}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.847080156801895}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.96626093623342}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.11234747496509}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Massachusetts"}, "mds2": {"value": -5.350570850660879}, "mds3": {"value": 1.4536324525831512}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.69590397213288}}, "branch_attrs": {"mutations": {"nuc": ["G3518T", "A17423G", "C24034T"]}}}, {"name": "USA/CA-CDC-03039595-001/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -1.9787723642866584}, "umap_x": {"value": 6.3463902}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.8309312}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.851542534368083}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.23426453826746}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.605166741476046}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "California"}, "mds2": {"value": -4.441378245742689}, "mds3": {"value": 1.1195107799951374}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.696919805168829}}, "branch_attrs": {"mutations": {"nuc": ["G614A", "A5084G"]}}}]}, {"name": "NODE_0000611", "node_attrs": {"div": 1, "num_date": {"value": 2020.0255139702763, "confidence": [2020.0122416928448, 2020.0534699932084]}}, "branch_attrs": {"mutations": {"nuc": ["G26144T"]}}, "children": [{"name": "AUS/VIC01/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_x": {"value": -2.4639420478502565}, "umap_x": {"value": 6.408927}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.8537579}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.095196796235154}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.14258901387953}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.215779901625022}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -5.896928451218847}, "mds3": {"value": 1.1444788730551472}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.946829903597664}}, "branch_attrs": {"mutations": {"nuc": ["T19065C", "T22303G", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-"], "S": ["S247R"]}, "labels": {"aa": "S: S247R"}}}, {"name": "NODE_0000007", "node_attrs": {"div": 1, "num_date": {"value": 2020.050363768438, "confidence": [2020.0155404941133, 2020.056638017887]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-02993506-001/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.058743169399, "confidence": [2020.058743169399, 2020.058743169399]}, "tsne_x": {"value": -2.392131611668038}, "umap_x": {"value": 6.897053}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4468725}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.858469631847132}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.83329574851681}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.561834384501132}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "California"}, "mds2": {"value": -3.998628451234218}, "mds3": {"value": 0.8863160980503813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.918398819671555}}, "branch_attrs": {"mutations": {"nuc": ["C17000T"]}}}, {"name": "AUS/VIC03/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_x": {"value": -2.350319989250911}, "umap_x": {"value": 7.0983243}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.1307092}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.1245139704885028}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.72334874875709}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.832499174881645}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.316197615461981}, "mds3": {"value": 0.0245679744682326}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.3882081857879407}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000009", "node_attrs": {"div": 1, "num_date": {"value": 2020.0337458442718, "confidence": [2020.0190865604231, 2020.058311933299]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000013", "node_attrs": {"div": 1, "num_date": {"value": 2020.0500375397974, "confidence": [2020.0174271773508, 2020.061845965194]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000015", "node_attrs": {"div": 1, "num_date": {"value": 2020.0642076502731, "confidence": [2020.0476404995588, 2020.0642076502731]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKPU-00026/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_x": {"value": -2.370476859395369}, "umap_x": {"value": 7.252067}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -1.8255161}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.1515975078116063}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.671500401396663}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.156638364290481}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -4.068698791945261}, "mds3": {"value": -0.0900511799943031}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 4.815683130079044}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC02/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0642076502731, "confidence": [2020.0642076502731, 2020.0642076502731]}, "tsne_x": {"value": -2.32785506875499}, "umap_x": {"value": 7.269837}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -1.8339753}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.3166188112711443}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.706313624673008}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.878106217679188}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.915944816414745}, "mds3": {"value": -0.2189985678022411}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.785364305036255}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000616", "node_attrs": {"div": 4, "num_date": {"value": 2020.0885817508124, "confidence": [2020.056946769271, 2020.1087485181138]}}, "branch_attrs": {"mutations": {"nuc": ["C9962T", "T13929C", "C14724T"]}}, "children": [{"name": "HongKong/HKPU-00030/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -2.783853423117077}, "umap_x": {"value": 7.1398244}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.0195353}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.7678173669103516}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.845072951163}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.310628327300157}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -5.530428324995161}, "mds3": {"value": 0.2360117351505018}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.688584469148237}}, "branch_attrs": {"mutations": {"nuc": ["G1149T"]}}}, {"name": "NODE_0000617", "node_attrs": {"div": 5, "num_date": {"value": 2020.110655737705, "confidence": [2020.0991966665529, 2020.110655737705]}}, "branch_attrs": {"mutations": {"nuc": ["T21584G"], "S": ["L8V"]}, "labels": {"aa": "S: L8V"}}, "children": [{"name": "HongKong/39_3001/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.110655737705, "confidence": [2020.110655737705, 2020.110655737705]}, "tsne_x": {"value": -3.223109112010665}, "umap_x": {"value": 5.910376}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0295303}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.023027608613805}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.67515486213498}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.914156584098594}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -7.629032523009203}, "mds3": {"value": 1.5574273413689057}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1739789909101058}}, "branch_attrs": {"mutations": {}}}, {"name": "HongKong/40_2801/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.110655737705, "confidence": [2020.110655737705, 2020.110655737705]}, "tsne_x": {"value": -3.218262228731116}, "umap_x": {"value": 5.9652867}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0259862}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0051737537492045}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.6845694267773}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.904926261265508}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -7.601353612318731}, "mds3": {"value": 1.6305495244211996}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1581403291438584}}, "branch_attrs": {"mutations": {}}}, {"name": "HongKong/44_0102/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.110655737705, "confidence": [2020.110655737705, 2020.110655737705]}, "tsne_x": {"value": -3.2147291359454924}, "umap_x": {"value": 5.993544}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0295773}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.479969718686629}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.68144956243823}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.40255667810089}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -7.750940112342106}, "mds3": {"value": 1.4147045729733094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0744803762634424}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000620", "node_attrs": {"div": 3, "num_date": {"value": 2020.107093251765, "confidence": [2020.0255482931955, 2020.1311961832503]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "C14805T"]}}, "children": [{"name": "NODE_0000019", "node_attrs": {"div": 3, "num_date": {"value": 2020.1245726724774, "confidence": [2020.0267034827802, 2020.1718254433347]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1133/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_x": {"value": -3.1710471162700933}, "umap_x": {"value": 4.781353}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1300576}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.35079940248944}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -26.08346956711212}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.222794927812163}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -13.688206487747532}, "mds3": {"value": 1.609346710886797}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.68964658272242}}, "branch_attrs": {"mutations": {"nuc": ["T1368C", "C6990T", "C20736T", "C23707T", "C23996T", "G25598T"], "S": ["P812S"]}, "labels": {"aa": "S: P812S"}}}, {"name": "JOR/SEARCH-0037-JOR/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.2062841530055, "confidence": [2020.2062841530055, 2020.2062841530055]}, "tsne_x": {"value": -3.003473646770636}, "umap_x": {"value": 6.9442787}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4382076}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.94330170563205}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.31046089730628}, "country": {"value": "Jordan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.517094527936413}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Amman"}, "mds2": {"value": -3.892949714615431}, "mds3": {"value": 2.6631354723703726}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 31.468568611734423}}, "branch_attrs": {"mutations": {"nuc": ["G28842T"]}}}]}, {"name": "NODE_0000624", "node_attrs": {"div": 4, "num_date": {"value": 2020.1570665762074, "confidence": [2020.126856371437, 2020.1598360655737]}}, "branch_attrs": {"mutations": {"nuc": ["T17247C"]}}, "children": [{"name": "OA965015", "node_attrs": {"div": 6, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_x": {"value": -3.157805466780508}, "umap_x": {"value": 5.876094}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0578065}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.260938353341916}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.39"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.609052676053867}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.549131002029351}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "England"}, "mds2": {"value": -9.273460969087935}, "mds3": {"value": 0.8264037910801221}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.371378021815343}}, "branch_attrs": {"mutations": {"nuc": ["A1515G", "C9223T"]}}}, {"name": "BRA/SP02/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_x": {"value": -3.016698222493772}, "umap_x": {"value": 6.1473975}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.925701}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.791757744524281}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.39512148437496}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.948655845334592}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Brazil"}, "mds2": {"value": -5.966942905095764}, "mds3": {"value": 1.5433245649802905}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.273408034731984}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000085", "node_attrs": {"div": 4, "num_date": {"value": 2020.1570665762074, "confidence": [2020.1431882171798, 2020.2123926879517]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "JOR/SEARCH-0035-JOR/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2445355191257, "confidence": [2020.2445355191257, 2020.2445355191257]}, "tsne_x": {"value": -3.3209774573231394}, "umap_x": {"value": 5.779253}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0534492}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 17.06026752173972}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.67664691551348}, "country": {"value": "Jordan"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 9.718368563030111}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Amman"}, "mds2": {"value": -6.484921720681548}, "mds3": {"value": 5.132029030458931}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 31.93945688205963}}, "branch_attrs": {"mutations": {"nuc": ["A7479G", "C25572T", "C28887T"]}}}, {"name": "OA967206", "node_attrs": {"div": 5, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_x": {"value": -3.1626287940132545}, "umap_x": {"value": 5.902951}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0519247}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.029638388113723}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.612995033130503}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.775555870167523}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Scotland"}, "mds2": {"value": -9.232318237946089}, "mds3": {"value": 0.8708877207565213}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1745210186927808}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C988T"]}}}]}]}, {"name": "NODE_0000021", "node_attrs": {"div": 3, "num_date": {"value": 2020.1171663140517, "confidence": [2020.0297775843003, 2020.1368403869765]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-03063125-001/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -3.1432575247795764}, "umap_x": {"value": 5.6152625}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1175067}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.853619705252205}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.5789287191364}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.104251900328869}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Washington"}, "mds2": {"value": -8.203086829742272}, "mds3": {"value": 1.861709477544983}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.703740027305026}}, "branch_attrs": {"mutations": {"nuc": ["T2446C", "C3411T", "G5572T"]}}}, {"name": "NODE_0000627", "node_attrs": {"div": 4, "num_date": {"value": 2020.1562788751746, "confidence": [2020.118858369411, 2020.1968119641176]}}, "branch_attrs": {"mutations": {"nuc": ["C2558T"]}}, "children": [{"name": "NODE_0000023", "node_attrs": {"div": 4, "num_date": {"value": 2020.2006326071037, "confidence": [2020.1627385531597, 2020.200819672131]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-9007/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.214480874317, "confidence": [2020.214480874317, 2020.214480874317]}, "tsne_x": {"value": -3.139604178401968}, "umap_x": {"value": 6.2644067}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.9182622}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.0027310761869354}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.573953100149467}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.547924797774999}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "South Africa"}, "mds2": {"value": -7.369491545691438}, "mds3": {"value": 0.782901294576105}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.071134552331692}}, "branch_attrs": {"mutations": {"nuc": ["C17977T"]}}}, {"name": "AUS/VIC79/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_x": {"value": -3.042515218236334}, "umap_x": {"value": 6.334079}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.868576}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.418143106134943}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.430932300458178}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.448543593585977}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -6.01379818299584}, "mds3": {"value": 1.593000816750776}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.525241558005089}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000089", "node_attrs": {"div": 4, "num_date": {"value": 2020.181049848272, "confidence": [2020.1512710448667, 2020.200819672131]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC82/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_x": {"value": -2.9030847710886967}, "umap_x": {"value": 6.411278}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.810427}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.411920736692879}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.33316807329341}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.115541814942144}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -5.023027955609563}, "mds3": {"value": 1.0574970656677871}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.4999554441874814}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000630", "node_attrs": {"div": 5, "num_date": {"value": 2020.1958436374873, "confidence": [2020.178447333255, 2020.2062892663814]}}, "branch_attrs": {"mutations": {"nuc": ["A2480G"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-9012/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_x": {"value": -3.345014122499344}, "umap_x": {"value": 5.495507}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1432495}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.733324869683727}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.802373914827232}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.615742003474084}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "South Africa"}, "mds2": {"value": -10.304344848901572}, "mds3": {"value": 1.848858279204434}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.53609498135126}}, "branch_attrs": {"mutations": {"nuc": ["G13183A", "C17977T"]}}}, {"name": "NGA/CV155/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_x": {"value": -3.4597617124903794}, "umap_x": {"value": 4.886127}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1681902}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.624496942325183}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.885150174847}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.841588903305642}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Nigeria"}, "mds2": {"value": -12.122260356698956}, "mds3": {"value": 1.89797502964682}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -13.504344668783144}}, "branch_attrs": {"mutations": {"nuc": ["C21T", "C26625T", "C27297T", "G28851T"]}}}, {"name": "NZL/20VR1283/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_x": {"value": -3.268816327960208}, "umap_x": {"value": 5.717672}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0984597}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.601278775423867}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.71535883558489}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.602349971422717}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "New Zealand"}, "mds2": {"value": -8.40832764140145}, "mds3": {"value": 2.142340770391422}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.451552614430762}}, "branch_attrs": {"mutations": {"nuc": ["C26994T"]}}}, {"name": "AUS/VIC187/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.214480874317, "confidence": [2020.214480874317, 2020.214480874317]}, "tsne_x": {"value": -3.276320764012208}, "umap_x": {"value": 6.0630927}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.9933066}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.394462567282257}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.71435978771773}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.660095436908798}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -9.70255994873852}, "mds3": {"value": 1.913694844016215}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.487631245118518}}, "branch_attrs": {"mutations": {"nuc": ["G210T"]}}}, {"name": "NODE_0000025", "node_attrs": {"div": 5, "num_date": {"value": 2020.2048220114914, "confidence": [2020.1862169124677, 2020.233485630227]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV262/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2609289617487, "confidence": [2020.2609289617487, 2020.2609289617487]}, "tsne_x": {"value": -3.3497983455740754}, "umap_x": {"value": 5.389554}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1660213}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.712721211215419}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.806721210153988}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.581538761231949}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Nigeria"}, "mds2": {"value": -10.10978256508051}, "mds3": {"value": 2.130817250884519}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.16664890364397}}, "branch_attrs": {"mutations": {"nuc": ["C11020T", "C25460T"]}}}, {"name": "OX684016", "node_attrs": {"div": 7, "num_date": {"value": 2020.266393442623, "confidence": [2020.266393442623, 2020.266393442623]}, "tsne_x": {"value": -3.341421059348309}, "umap_x": {"value": 5.7089276}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0668154}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.017097696160429}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.80191729989076}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.769165519167205}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "England"}, "mds2": {"value": -10.853963835520991}, "mds3": {"value": 1.0505531732944469}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.179605631443692}}, "branch_attrs": {"mutations": {"nuc": ["G7393T", "C21639T"], "S": ["P26L"]}, "labels": {"aa": "S: P26L"}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000091", "node_attrs": {"div": 0, "num_date": {"value": 2020.0083137002948, "confidence": [2019.9797344193935, 2020.0391021918097]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000664", "node_attrs": {"div": 1, "num_date": {"value": 2020.073646445802, "confidence": [2020.0593482713298, 2020.077868852459]}}, "branch_attrs": {"mutations": {"nuc": ["C21707T", "C23585-", "A23586-", "G23587-", "A23588-", "C23589-", "T23590-", "C23591-", "A23592-", "G23593-", "A23594-", "C23595-", "T23596-", "A23597-", "A23598-", "T23599-"], "S": ["H49Y", "Q675-", "T676-", "Q677-", "T678-", "N679-"]}, "labels": {"aa": "S: H49Y, Q675-, T676-, Q677-, T678-, N679-"}}, "children": [{"name": "FIN/hCoV-19-Finland-1/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -2.1342853896278524}, "umap_x": {"value": 7.044562}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.2805157}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.717291472071935}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.53573194139326}, "country": {"value": "Finland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.089509983648604}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Finland"}, "mds2": {"value": -3.949131685774039}, "mds3": {"value": 0.3352233455519532}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.777900590469612}}, "branch_attrs": {"mutations": {}}}, {"name": "FIN/1/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -2.1652152962067293}, "umap_x": {"value": 6.8979797}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.3641844}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.0624698069646055}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.53468632798022}, "country": {"value": "Finland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.451794794462259}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Finland"}, "mds2": {"value": -3.0605833040370234}, "mds3": {"value": 0.5354472381686527}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.4440855872333365}}, "branch_attrs": {"mutations": {"nuc": ["-23585C", "-23586A", "-23587G", "-23588A", "-23589C", "-23590T", "-23591C", "-23592A", "-23593G", "-23594A", "-23595C", "-23596T", "-23597A", "-23598A", "-23599T"], "S": ["-675Q", "-676T", "-677Q", "-678T", "-679N"]}, "labels": {"aa": "S: -675Q, -676T, -677Q, -678T, -679N"}}}, {"name": "Finland/FIN-1-VE6-P1/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -2.1988356303139893}, "umap_x": {"value": 6.9052773}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.3888907}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.80866382975444}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.530147490911343}, "country": {"value": "Finland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.660977191938707}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Finland"}, "mds2": {"value": -3.4614229063841546}, "mds3": {"value": 0.3424828956676604}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.3866442944082772}}, "branch_attrs": {"mutations": {}}}, {"name": "Finland/FIN-1-VE6-P3/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -2.174207896314672}, "umap_x": {"value": 6.87564}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4084618}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.80866382975444}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.546068570721687}, "country": {"value": "Finland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.906839965091745}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Finland"}, "mds2": {"value": -3.3975294150966167}, "mds3": {"value": 0.3241942802020423}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.3866442944082777}}, "branch_attrs": {"mutations": {}}}, {"name": "Finland/FIN-1-VE6-P2/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -2.212441201096156}, "umap_x": {"value": 6.930463}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.3776822}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.80866382975444}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.53281121523709}, "country": {"value": "Finland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.911534596371546}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Finland"}, "mds2": {"value": -3.605451819356461}, "mds3": {"value": 0.3901774683595168}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.3866442944082772}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000094", "node_attrs": {"div": 0, "num_date": {"value": 2020.0112065169403, "confidence": [2019.9933482002568, 2020.0424508253493]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDPH-UC3/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -2.2795955922364857}, "umap_x": {"value": 6.5137663}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.7016778}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.038874191037146}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.408023312503307}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.786420209997663}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "California"}, "mds2": {"value": -4.03101483224674}, "mds3": {"value": 0.922790221154674}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.86772207525362}}, "branch_attrs": {"mutations": {"nuc": ["C21T", "C9924T", "C9951T"]}}}, {"name": "NODE_0000095", "node_attrs": {"div": 0, "num_date": {"value": 2020.0253078131855, "confidence": [2020.0062846667977, 2020.0444593518591]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000663", "node_attrs": {"div": 2, "num_date": {"value": 2020.050075204024, "confidence": [2020.0328075008451, 2020.077868852459]}}, "branch_attrs": {"mutations": {"nuc": ["A24389C", "G24390C"], "S": ["S943P"]}, "labels": {"aa": "S: S943P"}}, "children": [{"name": "OM065346", "node_attrs": {"div": 3, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -1.9718704817404105}, "umap_x": {"value": 6.380451}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.815629}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.949688448895739}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.23713286796112}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.463334389527168}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Anhui"}, "mds2": {"value": -4.736053990357208}, "mds3": {"value": 1.0515130081125836}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.975070624022656}}, "branch_attrs": {"mutations": {"nuc": ["G1895A"]}}}, {"name": "OM065353", "node_attrs": {"div": 4, "num_date": {"value": 2020.0833333333333, "confidence": [2020.0833333333333, 2020.0833333333333]}, "tsne_x": {"value": -1.840090329437236}, "umap_x": {"value": 6.093024}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.968374}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.947838001771856}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.977106985429675}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.59987755011525}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Anhui"}, "mds2": {"value": -5.342365306715065}, "mds3": {"value": 1.5819680609888596}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.975423942071966}}, "branch_attrs": {"mutations": {"nuc": ["A17423G", "C28854T"]}}}]}, {"name": "NODE_0000097", "node_attrs": {"div": 0, "num_date": {"value": 2020.0259918085642, "confidence": [2020.0122011960525, 2020.0459413418462]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000099", "node_attrs": {"div": 0, "num_date": {"value": 2020.0339157323867, "confidence": [2020.0204192904139, 2020.0459913215843]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-03037551-001/2020", "node_attrs": {"div": 0, "num_date": {"value": 2020.0724043715848, "confidence": [2020.0724043715848, 2020.0724043715848]}, "tsne_x": {"value": -2.3056157604516208}, "umap_x": {"value": 7.01196}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.2700143}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.858268786217153}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.571045577167983}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.125782329481293}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "California"}, "mds2": {"value": -2.971258649658606}, "mds3": {"value": 0.6578068408837422}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.69887997824262}}, "branch_attrs": {"mutations": {"nuc": ["G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-"]}}}, {"name": "NODE_0000102", "node_attrs": {"div": 0, "num_date": {"value": 2020.0429375709684, "confidence": [2020.029596219319, 2020.0478269928055]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/63_1402/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1352459016393, "confidence": [2020.1352459016393, 2020.1352459016393]}, "tsne_x": {"value": -2.15165070860286}, "umap_x": {"value": 6.869531}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4657667}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0077849522324565}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.56226728232984}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.906670246977451}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -3.955749379659457}, "mds3": {"value": 0.7113142805688841}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1626878786979848}}, "branch_attrs": {"mutations": {"nuc": ["G22309T", "G22936T"], "S": ["L249F", "K458N"]}, "labels": {"aa": "S: L249F, K458N"}}}, {"name": "NODE_0000103", "node_attrs": {"div": 0, "num_date": {"value": 2020.0478269928055, "confidence": [2020.03718319378, 2020.053304137095]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000110", "node_attrs": {"div": 0, "num_date": {"value": 2020.055722862432, "confidence": [2020.0414840093295, 2020.058743169399]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/HZ-62/2020", "node_attrs": {"div": 0, "num_date": {"value": 2020.058743169399, "confidence": [2020.058743169399, 2020.058743169399]}, "tsne_x": {"value": -2.191999292974286}, "umap_x": {"value": 7.1586323}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.0221493}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.039789780656504}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.53073337431616}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.761805347617195}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Zhejiang"}, "mds2": {"value": -2.331117660149293}, "mds3": {"value": 0.4614051048208218}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0626215768734705}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000676", "node_attrs": {"div": 1, "num_date": {"value": 2020.0803530008939, "confidence": [2020.0635573864135, 2020.0833333333333]}}, "branch_attrs": {"mutations": {"nuc": ["C17373T"]}}, "children": [{"name": "USA/WI-CDC-03041142-001/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0833333333333, "confidence": [2020.0833333333333, 2020.0833333333333]}, "tsne_x": {"value": -2.200858863161522}, "umap_x": {"value": 6.8544273}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4014337}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.820573851574843}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.559901148485704}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.478810377664732}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Wisconsin"}, "mds2": {"value": -3.31544817138917}, "mds3": {"value": 0.6624713579829729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.694322988330716}}, "branch_attrs": {"mutations": {"nuc": ["T20299-", "T20300-", "A20301-"]}}}, {"name": "AUS/VIC14/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0887978142077, "confidence": [2020.0887978142077, 2020.0887978142077]}, "tsne_x": {"value": -2.1490031130934697}, "umap_x": {"value": 7.279037}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -1.8223952}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.9242903038984568}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.524859441448527}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.828580182557402}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.8957802580889793}, "mds3": {"value": -0.2847682514913501}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.327635137402632}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000112", "node_attrs": {"div": 0, "num_date": {"value": 2020.0548292874403, "confidence": [2020.0436449077888, 2020.0744865730205]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OM065352", "node_attrs": {"div": 1, "num_date": {"value": 2020.0833333333333, "confidence": [2020.0833333333333, 2020.0833333333333]}, "tsne_x": {"value": -2.1822673060531}, "umap_x": {"value": 7.093043}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.2057319}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.951501487492033}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.56783321544085}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.085707027351233}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Anhui"}, "mds2": {"value": -2.91095630617632}, "mds3": {"value": 0.6233184618251723}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.9484208680898}}, "branch_attrs": {"mutations": {"nuc": ["C29762T"]}}}, {"name": "NODE_0000114", "node_attrs": {"div": 0, "num_date": {"value": 2020.0744409708832, "confidence": [2020.018664140335, 2020.1445515085072]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-00099/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_x": {"value": -2.2633410483816205}, "umap_x": {"value": 7.2895203}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -1.6483785}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 29.98918477201257}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.08660883271572}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 5.8480708871860845}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "USA"}, "mds2": {"value": -1.3720315492490194}, "mds3": {"value": 0.8424231468948075}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.179242317613274}}, "branch_attrs": {"mutations": {"nuc": ["C14408T", "C17410T"]}}}, {"name": "NODE_0000119", "node_attrs": {"div": 0, "num_date": {"value": 2020.107208832443, "confidence": [2020.0150003403776, 2020.1451819359513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000122", "node_attrs": {"div": 0, "num_date": {"value": 2020.2157566159383, "confidence": [2020.1538038112, 2020.2855680748064]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-1007/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.3073770491803, "confidence": [2020.3073770491803, 2020.3073770491803]}, "tsne_x": {"value": -2.214797099146308}, "umap_x": {"value": 6.8335776}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.503673}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.436595448289675}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.5245105505284}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.914736819608122}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "California"}, "mds2": {"value": -4.043925138507664}, "mds3": {"value": 1.0679096084016162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.633769521063918}}, "branch_attrs": {"mutations": {"nuc": ["T13C", "G10617A", "C25692T"]}}}, {"name": "NODE_0000123", "node_attrs": {"div": 0, "num_date": {"value": 2020.3220405726447, "confidence": [2020.1068086355222, 2020.4767690913013]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY_CCHE57357_P_43/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.5396174863388, "confidence": [2020.5396174863388, 2020.5396174863388]}, "tsne_x": {"value": -2.717300254820897}, "umap_x": {"value": 6.415073}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.7826571}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.946224701998241}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.300568129412888}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.882627327051794}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Egypt"}, "mds2": {"value": -4.243601525756324}, "mds3": {"value": 1.4611870333664383}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.96814332117898}}, "branch_attrs": {"mutations": {"nuc": ["C241T", "C3411T", "G6383T", "G10793T", "C29363T"]}}}, {"name": "NODE_0000124", "node_attrs": {"div": 0, "num_date": {"value": 2020.4130574236844, "confidence": [2020.1110326572223, 2020.510237640984]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Rodent/CHN/BMA8/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.6653005464482, "confidence": [2020.6653005464482, 2020.6653005464482]}, "tsne_x": {"value": -1.5548424591307315}, "umap_x": {"value": 5.323149}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1363223}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.931073477370084}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.50835635250878}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.173774064598222}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "China"}, "mds2": {"value": -10.97963094317674}, "mds3": {"value": 0.8522241594219202}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.97188046096191}}, "branch_attrs": {"mutations": {"nuc": ["C3264T", "C8090T", "T12879G", "A12884G", "A23056C", "C26309A", "C26351T"], "S": ["Q498H"]}, "labels": {"aa": "S: Q498H"}}}, {"name": "EGY/CCHE57357_W3_A094/2021", "node_attrs": {"div": 13, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_x": {"value": -2.656379647965601}, "umap_x": {"value": 2.7946405}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.6093724}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.940765866037069}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.073846418191863}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.244236580655127}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Egypt"}, "mds2": {"value": 15.75187930837284}, "mds3": {"value": 3.8696512792722544}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.961984652252067}}, "branch_attrs": {"mutations": {"nuc": ["G5657A", "C7047T", "T7122G", "T12262C", "G14080A", "C17304T", "G19918A", "A20268G", "G23958A", "T23962C", "G28079T", "T29317C", "T29655A"], "S": ["G799D"]}, "labels": {"aa": "S: G799D"}}}]}]}]}, {"name": "NODE_0000679", "node_attrs": {"div": 2, "num_date": {"value": 2020.1516393442623, "confidence": [2020.1307620853809, 2020.1516393442623]}}, "branch_attrs": {"mutations": {"nuc": ["G1440A", "G2891A"]}}, "children": [{"name": "DEU/NRW-05/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1543715846994, "confidence": [2020.1543715846994, 2020.1543715846994]}, "tsne_x": {"value": -2.158256998104031}, "umap_x": {"value": 7.0500875}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.2073932}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.1035590860916469}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.30052609186861}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.885918964723199}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": -5.291076332034348}, "mds3": {"value": -0.0862997834264567}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.767293000964611}}, "branch_attrs": {"mutations": {}}}, {"name": "DEU/NRW-03/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1543715846994, "confidence": [2020.1543715846994, 2020.1543715846994]}, "tsne_x": {"value": -2.166824157391275}, "umap_x": {"value": 7.0235367}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.3313684}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.160976103900624}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.338970896086227}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.797612800615769}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": -3.775631525050052}, "mds3": {"value": 0.4286052301178991}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.1951766091704275}}, "branch_attrs": {"mutations": {}}}, {"name": "DEU/NRW-02.1/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1516393442623, "confidence": [2020.1516393442623, 2020.1516393442623]}, "tsne_x": {"value": -2.174423603996543}, "umap_x": {"value": 6.8751664}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.485909}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.881261532047616}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.32251531135628}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.120894896703651}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": -3.794576742340277}, "mds3": {"value": 0.931268585796283}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.162507300010604}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000126", "node_attrs": {"div": 2, "num_date": {"value": 2020.155130677306, "confidence": [2020.14132130769, 2020.1856821658334]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX666615", "node_attrs": {"div": 5, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_x": {"value": -2.210226310786144}, "umap_x": {"value": 6.8384175}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.519887}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 38.52951516678303}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.1006975369257}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 4.332416951677439}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "England"}, "mds2": {"value": -5.111483567544098}, "mds3": {"value": 0.8356692379783035}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -21.575213266163445}}, "branch_attrs": {"mutations": {"nuc": ["C4668T", "C28708T", "C29870A"]}}}, {"name": "NODE_0000681", "node_attrs": {"div": 3, "num_date": {"value": 2020.2022745928432, "confidence": [2020.178803873943, 2020.2035519125684]}}, "branch_attrs": {"mutations": {"nuc": ["G28851T"]}}, "children": [{"name": "OX562018", "node_attrs": {"div": 3, "num_date": {"value": 2020.2035519125684, "confidence": [2020.2035519125684, 2020.2035519125684]}, "tsne_x": {"value": -2.1964980044570184}, "umap_x": {"value": 6.8294516}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.5561397}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 30.486479818457404}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.13176824516384}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 6.400888362314606}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Wales"}, "mds2": {"value": -4.974715512369409}, "mds3": {"value": 0.7025486231138474}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 5.927607688856415}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000128", "node_attrs": {"div": 3, "num_date": {"value": 2020.2029717735022, "confidence": [2020.18781536748, 2020.229580823772]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX556111", "node_attrs": {"div": 5, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_x": {"value": -2.2640679808284045}, "umap_x": {"value": 5.7131333}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0949962}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.885547688891422}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.75824442744424}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.00756497427654}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Wales"}, "mds2": {"value": -6.815356170534704}, "mds3": {"value": 1.4009663313556728}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.273906788133049}}, "branch_attrs": {"mutations": {"nuc": ["C12923T", "C25669T"]}}}, {"name": "OX570590", "node_attrs": {"div": 7, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_x": {"value": -2.874875883896292}, "umap_x": {"value": 5.901997}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.058247}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 47.64568544198848}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.96913209293944}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 6.24246127390778}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Wales"}, "mds2": {"value": -8.42524564037828}, "mds3": {"value": 3.3384904073742643}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 4.858472672954083}}, "branch_attrs": {"mutations": {"nuc": ["T6655C", "G11083T", "G14118A", "C28311T"]}}}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000638", "node_attrs": {"div": 1, "num_date": {"value": 2020.0349516012068, "confidence": [2020.0215336194995, 2020.0662803135483]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "NODE_0000642", "node_attrs": {"div": 2, "num_date": {"value": 2020.1074960267165, "confidence": [2020.0621433924116, 2020.121371821709]}}, "branch_attrs": {"mutations": {"nuc": ["C29635T"]}}, "children": [{"name": "Japan/DP0005/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.1243169398906, "confidence": [2020.1243169398906, 2020.1243169398906]}, "tsne_x": {"value": -2.623162162914235}, "umap_x": {"value": 6.818893}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.5511696}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.566726441307153}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.768295771115405}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.10608968324679}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Japan"}, "mds2": {"value": -4.886090853791227}, "mds3": {"value": 1.1962283289219346}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8173237991705647}}, "branch_attrs": {"mutations": {"nuc": ["C18656T"]}}}, {"name": "AUS/NT05/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1489071038252, "confidence": [2020.1489071038252, 2020.1489071038252]}, "tsne_x": {"value": -2.5473849019239774}, "umap_x": {"value": 6.888585}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4730248}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.515920759128797}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.726630297754937}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.618419580613799}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Northern Territory"}, "mds2": {"value": -3.85848313509927}, "mds3": {"value": 0.9464098434498924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.21881341898593}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000650", "node_attrs": {"div": 2, "num_date": {"value": 2020.0774723889715, "confidence": [2020.0477281983299, 2020.104399833648]}}, "branch_attrs": {"mutations": {"nuc": ["G11410A"]}}, "children": [{"name": "Japan/DP0200/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.1243169398906, "confidence": [2020.1243169398906, 2020.1243169398906]}, "tsne_x": {"value": -2.678699392684674}, "umap_x": {"value": 6.3814087}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.8111207}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.739617170423569}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.778886467958948}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.049917664542805}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Japan"}, "mds2": {"value": -4.973925805268147}, "mds3": {"value": 0.9840005007909224}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -13.883036597378483}}, "branch_attrs": {"mutations": {"nuc": ["A3132G"]}}}, {"name": "USA/Cruise-CDC-03052605-001/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.129781420765, "confidence": [2020.129781420765, 2020.129781420765]}, "tsne_x": {"value": -2.8366915473162297}, "umap_x": {"value": 6.128243}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.975885}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.852338948220384}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.74139197740996}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.186866085595874}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "USA"}, "mds2": {"value": -5.828957361897031}, "mds3": {"value": 1.314002631881926}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.70400908597895}}, "branch_attrs": {"mutations": {"nuc": ["C3738T", "C26326T"]}}}]}, {"name": "NODE_0000655", "node_attrs": {"div": 4, "num_date": {"value": 2020.0766504850842, "confidence": [2020.0498984958144, 2020.1488152812306]}}, "branch_attrs": {"mutations": {"nuc": ["G1397A", "T28688C", "G29742T"]}}, "children": [{"name": "USA/NY1-PV08001/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_x": {"value": -3.845492256355302}, "umap_x": {"value": 5.0030494}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1520503}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.913560025375077}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.525220475875624}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.706991627212949}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "New York"}, "mds2": {"value": -10.88635596482932}, "mds3": {"value": 5.380268485734944}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.85212707080894}}, "branch_attrs": {"mutations": {"nuc": ["G3242A", "A9514G", "C25214T", "G29027T"]}}}, {"name": "NODE_0000133", "node_attrs": {"div": 4, "num_date": {"value": 2020.1074443355815, "confidence": [2020.0464144358216, 2020.1503137158106]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR0174/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -3.5559456283633537}, "umap_x": {"value": 6.0914483}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.994062}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.014525551534521}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.572221387226204}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.511691231181584}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.552966802951915}, "mds3": {"value": 3.8094118689670906}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0989745217048762}}, "branch_attrs": {"mutations": {"nuc": ["G25618A"]}}}, {"name": "NODE_0000134", "node_attrs": {"div": 4, "num_date": {"value": 2020.1250143096656, "confidence": [2020.0451425308142, 2020.171591920023]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1519/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_x": {"value": -3.863246067570537}, "umap_x": {"value": 5.5954733}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0864682}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.078977482259496}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.480221557089163}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.93512049489033}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -13.993517162915726}, "mds3": {"value": 1.297801008902273}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.155435449570525}}, "branch_attrs": {"mutations": {"nuc": ["C6751T", "C7119T", "G9190T", "G13993T", "T27995A"]}}}, {"name": "NODE_0000137", "node_attrs": {"div": 4, "num_date": {"value": 2020.1329623704264, "confidence": [2020.0512765710994, 2020.1932061405635]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1334/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.282786885246, "confidence": [2020.282786885246, 2020.282786885246]}, "tsne_x": {"value": -3.877751158345208}, "umap_x": {"value": 4.87245}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1428967}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.872604821792952}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.490435343778977}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.772913876702283}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -12.426564320664763}, "mds3": {"value": 5.756000783841972}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.014474557062312}}, "branch_attrs": {"mutations": {"nuc": ["C1076T", "C9491T", "C21658T", "C27964T", "C29420T"]}}}, {"name": "NODE_0000656", "node_attrs": {"div": 14, "num_date": {"value": 2020.3200019413446, "confidence": [2020.2781700869411, 2020.336992522112]}}, "branch_attrs": {"mutations": {"nuc": ["A178G", "T606C", "C884T", "G8653T", "G12167A", "A19073G", "G27915T", "G28300T", "C28868T", "C29077T"]}}, "children": [{"name": "IND/nimh-11866/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_x": {"value": -4.622643299486353}, "umap_x": {"value": 2.689056}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.5609653}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.336807314289094}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.67337940968603}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.16712297684448}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "India"}, "mds2": {"value": -20.851405431843144}, "mds3": {"value": 8.193272678506474}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.5489203614707}}, "branch_attrs": {"mutations": {"nuc": ["C27847T"]}}}, {"name": "IND/nimh-11877/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_x": {"value": -4.630154959780519}, "umap_x": {"value": 2.5249166}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4829984}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.299743236910516}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.673244997414315}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.062942020606055}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "India"}, "mds2": {"value": -20.31962227136975}, "mds3": {"value": 11.532052622765567}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -7.794422316998848}}, "branch_attrs": {"mutations": {"nuc": ["T8022G", "T20891G"]}}}]}]}]}]}]}, {"name": "NODE_0000140", "node_attrs": {"div": 1, "num_date": {"value": 2020.049405109941, "confidence": [2020.0324791581857, 2020.0707941674166]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/Cruise-CDC-3057405-001/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1516393442623, "confidence": [2020.1516393442623, 2020.1516393442623]}, "tsne_x": {"value": -2.493677266687154}, "umap_x": {"value": 5.8254}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.0643935}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.8541697271794355}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -25.349514963827414}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.721339327804362}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "USA"}, "mds2": {"value": -6.675058830378036}, "mds3": {"value": 1.7179390917875603}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.703649583247872}}, "branch_attrs": {"mutations": {"nuc": ["C6636T", "C11750T", "C11956T", "T25795C"]}}}, {"name": "NODE_0000141", "node_attrs": {"div": 1, "num_date": {"value": 2020.0504053439254, "confidence": [2020.0399323292936, 2020.073478559924]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/NT01/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.1407103825136, "confidence": [2020.1407103825136, 2020.1407103825136]}, "tsne_x": {"value": -2.6472081660926814}, "umap_x": {"value": 6.362477}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.8401787}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.619383077169195}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.785239003345577}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.353378550635355}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Northern Territory"}, "mds2": {"value": -4.806684810756207}, "mds3": {"value": 1.071258035187058}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.884953141298326}}, "branch_attrs": {"mutations": {"nuc": ["C3099T", "G28378T"]}}}, {"name": "NODE_0000145", "node_attrs": {"div": 1, "num_date": {"value": 2020.0582498042795, "confidence": [2020.0422370378622, 2020.077254269146]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OM065347", "node_attrs": {"div": 2, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -2.5438954231063966}, "umap_x": {"value": 6.8924227}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4288945}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.94744649609638}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.735442213013265}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.879942946384164}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Anhui"}, "mds2": {"value": -3.869065940453585}, "mds3": {"value": 1.0121532488393252}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.981835000635208}}, "branch_attrs": {"mutations": {"nuc": ["C1060T"]}}}, {"name": "NODE_0000146", "node_attrs": {"div": 1, "num_date": {"value": 2020.0664547209576, "confidence": [2020.047739384906, 2020.0920131011853]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000147", "node_attrs": {"div": 1, "num_date": {"value": 2020.0742298939342, "confidence": [2020.0521115407105, 2020.1032681487357]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/Cruise-CDC-3054886-001/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.1407103825136, "confidence": [2020.1407103825136, 2020.1407103825136]}, "tsne_x": {"value": -2.790510047022892}, "umap_x": {"value": 6.4432826}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.7961931}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.8617683777645135}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.92925107876069}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.139053885318106}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "USA"}, "mds2": {"value": -6.079234833085311}, "mds3": {"value": 1.3773404890124228}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.625871229225144}}, "branch_attrs": {"mutations": {"nuc": ["C254T", "G29736T", "G29751C"]}}}, {"name": "NODE_0000148", "node_attrs": {"div": 1, "num_date": {"value": 2020.1096633696952, "confidence": [2020.0805923424236, 2020.110655737705]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Hu_DP_Kng_19-020/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.110655737705, "confidence": [2020.110655737705, 2020.110655737705]}, "tsne_x": {"value": -2.48312931262924}, "umap_x": {"value": 7.040875}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.2593708}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.41567752507746}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.68504709290505}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.585783398992405}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Japan"}, "mds2": {"value": -3.046032239904312}, "mds3": {"value": 0.7314893876662079}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.402099135797844}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/NT04/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.1434426229507, "confidence": [2020.1434426229507, 2020.1434426229507]}, "tsne_x": {"value": -2.4607451804673377}, "umap_x": {"value": 7.127435}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.0964875}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 11.30768375203142}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.6857193306803}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.958661477559495}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Northern Territory"}, "mds2": {"value": -3.84860554884124}, "mds3": {"value": 0.7171749346375083}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.7412785532145145}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000150", "node_attrs": {"div": 1, "num_date": {"value": 2020.0747332596197, "confidence": [2020.0493479188765, 2020.0999285444523]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/NT02/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.1407103825136, "confidence": [2020.1407103825136, 2020.1407103825136]}, "tsne_x": {"value": -2.798524237881048}, "umap_x": {"value": 6.4709473}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.8085186}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.695223772800268}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.74073006463844}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.143946677544408}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Northern Territory"}, "mds2": {"value": -6.312266359406896}, "mds3": {"value": 1.2827375272132169}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.3075636254106735}}, "branch_attrs": {"mutations": {"nuc": ["C9333T", "C11671T", "T11737C"]}}}, {"name": "NODE_0000152", "node_attrs": {"div": 1, "num_date": {"value": 2020.1076863158614, "confidence": [2020.0353071168493, 2020.121768057695]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/DP0274/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.127049180328, "confidence": [2020.127049180328, 2020.127049180328]}, "tsne_x": {"value": -2.481409815594249}, "umap_x": {"value": 7.092356}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.2177305}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.403619900485903}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.675557413835897}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.331157134203839}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Japan"}, "mds2": {"value": -3.053731651295463}, "mds3": {"value": 0.6986109654938689}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.10398353210105}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000153", "node_attrs": {"div": 1, "num_date": {"value": 2020.1075054945395, "confidence": [2020.0407038402843, 2020.1243169398906]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/DP0196/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1243169398906, "confidence": [2020.1243169398906, 2020.1243169398906]}, "tsne_x": {"value": -2.532115232398305}, "umap_x": {"value": 6.916413}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4355438}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.736135569784677}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -24.725150616459068}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.658590710484058}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Japan"}, "mds2": {"value": -3.8087727298116745}, "mds3": {"value": 0.9429931975550172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.702353022382341}}, "branch_attrs": {"mutations": {"nuc": ["C5284T"]}}}, {"name": "NODE_0000645", "node_attrs": {"div": 4, "num_date": {"value": 2020.2153545804354, "confidence": [2020.1576963004043, 2020.242818263397]}}, "branch_attrs": {"mutations": {"nuc": ["C13730T", "C23929T", "C28311T"]}}, "children": [{"name": "IND/nimh-0318/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2745901639344, "confidence": [2020.2745901639344, 2020.2745901639344]}, "tsne_x": {"value": -3.309386475683956}, "umap_x": {"value": 5.7436805}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1613166}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.575945431542882}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.837774916241287}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.687664341057528}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "India"}, "mds2": {"value": -10.3421513552474}, "mds3": {"value": 2.630798962800959}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.929525637205538}}, "branch_attrs": {"mutations": {"nuc": ["G20419T", "G26467T", "C26801T"]}}}, {"name": "NODE_0000646", "node_attrs": {"div": 5, "num_date": {"value": 2020.2462740476199, "confidence": [2020.2108842466857, 2020.3023334922113]}}, "branch_attrs": {"mutations": {"nuc": ["C6312A"]}}, "children": [{"name": "AUS/VIC1583/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_x": {"value": -3.425221018949477}, "umap_x": {"value": 4.4731493}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.044497}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.020771509695715}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.70558104021409}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.095283185913289}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -14.220275945137445}, "mds3": {"value": 0.58254295032991}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.651018183092914}}, "branch_attrs": {"mutations": {"nuc": ["C3429T", "C12786T", "A13951G", "C21811T"]}}}, {"name": "NODE_0000156", "node_attrs": {"div": 5, "num_date": {"value": 2020.322793358782, "confidence": [2020.2085145589865, 2020.3674863387978]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0118/2021", "node_attrs": {"div": 14, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_x": {"value": -3.5070789327509218}, "umap_x": {"value": 2.815755}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.6260264}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.15769822298283}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.610739417317244}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.039881487684523}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "New Zealand"}, "mds2": {"value": -21.12762986965056}, "mds3": {"value": 2.7645378613212097}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.224592399104955}}, "branch_attrs": {"mutations": {"nuc": ["A435C", "A2317G", "A6561G", "C6720T", "A8128G", "A19068C", "C27998T", "G28178T", "T29685C"]}}}, {"name": "AUS/VIC1651/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3674863387978, "confidence": [2020.3674863387978, 2020.3674863387978]}, "tsne_x": {"value": -3.350221260457848}, "umap_x": {"value": 5.642274}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -3.1877964}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.440808729772174}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.79321099453651}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.492083816807272}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "Victoria"}, "mds2": {"value": -11.568223390093788}, "mds3": {"value": 0.0264430865990829}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.654330085831154}}, "branch_attrs": {"mutations": {"nuc": ["C26151T", "C28232T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000606", "node_attrs": {"div": 1, "num_date": {"value": 2019.9398499738693, "confidence": [2019.8032618667394, 2019.942774336773]}}, "branch_attrs": {"mutations": {"nuc": ["C3037T"]}}, "children": [{"name": "NODE_0000607", "node_attrs": {"div": 4, "num_date": {"value": 2020.0763786862392, "confidence": [2020.056954471166, 2020.0806010928961]}}, "branch_attrs": {"mutations": {"nuc": ["C17074T", "C27213T", "T27384C"]}}, "children": [{"name": "AUS/SA03/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_x": {"value": -2.032607654350535}, "umap_x": {"value": 6.5998588}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.5715084}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.801113428790877}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.18863716809519}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.925094575772929}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "South Australia"}, "mds2": {"value": -3.148792616012372}, "mds3": {"value": 0.748771762155284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.584367242580873}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/SA02/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_x": {"value": -2.038748961996166}, "umap_x": {"value": 6.8843007}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4277735}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.801113428790877}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.21702453830936}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.446332244200467}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "South Australia"}, "mds2": {"value": -3.3339615407927004}, "mds3": {"value": 1.0111812599582946}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.584367242580873}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/SA01/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_x": {"value": -2.03428161947361}, "umap_x": {"value": 6.6005316}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.5655699}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.710013389007549}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.194065823585863}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.699125102386162}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "South Australia"}, "mds2": {"value": -3.2904384288410164}, "mds3": {"value": 0.6613276583768446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.735485896286683}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/SA04/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_x": {"value": -2.035397596893296}, "umap_x": {"value": 6.791483}, "Nextstrain_clade": {"value": "19A"}, "umap_y": {"value": -2.4341683}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.735994750540647}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "B"}, "tsne_y": {"value": -23.215091967790265}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.81959489822238}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "division": {"value": "South Australia"}, "mds2": {"value": -3.1776389903878948}, "mds3": {"value": 1.0102513955532602}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.5245008618935145}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000605", "node_attrs": {"div": 2, "num_date": {"value": 2019.9394241640646, "confidence": [2019.8464635493692, 2019.9461946653112]}}, "branch_attrs": {"mutations": {"nuc": ["C241T"]}}, "children": [{"name": "KEN/C1102/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.2964480874316, "confidence": [2020.2964480874316, 2020.2964480874316]}, "tsne_x": {"value": -4.934698492634304}, "umap_x": {"value": 7.154003}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.4761195}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 35.06612126533752}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.200907958850248}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 5.252820453187575}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": -1.3005211275376127}, "mds3": {"value": 0.4476744781027744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.5103305219803538}}, "branch_attrs": {"mutations": {"nuc": ["A20268G", "G22205C"], "S": ["D215H"]}, "labels": {"aa": "S: D215H"}}}, {"name": "NODE_0000596", "node_attrs": {"div": 3, "num_date": {"value": 2019.9394371176754, "confidence": [2019.8896748881439, 2019.94619650098]}}, "branch_attrs": {"mutations": {"nuc": ["A23403G"], "S": ["D614G"]}, "labels": {"aa": "S: D614G"}}, "children": [{"name": "NODE_0000165", "node_attrs": {"div": 3, "num_date": {"value": 2020.0325801629501, "confidence": [2019.997796695325, 2020.0737996085923]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000599", "node_attrs": {"div": 4, "num_date": {"value": 2020.0763786862392, "confidence": [2020.0532198684275, 2020.077868852459]}}, "branch_attrs": {"mutations": {"nuc": ["G6446A"]}}, "children": [{"name": "DEU/BavPat4-ChVir1019/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_x": {"value": -4.531552891637195}, "umap_x": {"value": 7.6641903}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.8932069}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.564845286823906}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.161178896544808}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.757589002603213}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bavaria"}, "mds2": {"value": -0.1387707373133542}, "mds3": {"value": 0.0133218180867982}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.674431292864}}, "branch_attrs": {"mutations": {}}}, {"name": "OU072894", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_x": {"value": -4.535708325865975}, "umap_x": {"value": 8.030773}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5724864}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.19089317819636}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.13486526473113}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.359721544550022}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bavaria"}, "mds2": {"value": -0.0702852841839545}, "mds3": {"value": -0.1003692852829383}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.184690101115896}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000167", "node_attrs": {"div": 3, "num_date": {"value": 2020.0763786862392, "confidence": [2020.042712732419, 2020.0806010928961]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DEU/BavPat2-ChVir984-ChVir1017/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_x": {"value": -4.641799886897829}, "umap_x": {"value": 7.76719}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.76279855}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.32852052623828}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.991974832890351}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.781578379635644}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bavaria"}, "mds2": {"value": -0.0282608506023954}, "mds3": {"value": -0.2252522588082855}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.059132155255115}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000600", "node_attrs": {"div": 9, "num_date": {"value": 2020.6188524590164, "confidence": [2020.5901680335496, 2020.6188524590164]}}, "branch_attrs": {"mutations": {"nuc": ["C14362T", "G15907A", "T17091C", "G25563T", "G26257T", "A29871G"]}}, "children": [{"name": "EGY/EGY-S040/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.627049180328, "confidence": [2020.627049180328, 2020.627049180328]}, "tsne_x": {"value": -0.3173832947189858}, "umap_x": {"value": 6.244603}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7680641}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.831617381686659}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -16.157194830240545}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.204518843268392}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": -0.2032139633392592}, "mds3": {"value": 1.584092990595064}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.590206115770137}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/EGY-S031/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.627049180328, "confidence": [2020.627049180328, 2020.627049180328]}, "tsne_x": {"value": -0.3168497510430553}, "umap_x": {"value": 6.5817237}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6662949}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.831617381686659}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -16.157514772962447}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.248419095847258}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": -0.1403243901928156}, "mds3": {"value": 2.4022189984812083}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.590206115770137}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/EGY-025/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6188524590164, "confidence": [2020.6188524590164, 2020.6188524590164]}, "tsne_x": {"value": -0.3176158530282208}, "umap_x": {"value": 6.366651}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7228574}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.831617381686659}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -16.157262047817287}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.734558460076196}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": -0.1508625533636468}, "mds3": {"value": 1.90360503188639}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.590206115770137}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000155", "node_attrs": {"div": 9, "num_date": {"value": 2020.6238207558858, "confidence": [2020.601731848871, 2020.6407103825136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY-67/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6407103825136, "confidence": [2020.6407103825136, 2020.6407103825136]}, "tsne_x": {"value": -0.317061655850731}, "umap_x": {"value": 6.662898}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6371989}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.831617381686659}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -16.158043655366633}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.130685121458007}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": -0.179453283169409}, "mds3": {"value": 2.4979128882039308}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.590206115770137}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000170", "node_attrs": {"div": 9, "num_date": {"value": 2020.6513912522598, "confidence": [2020.6270694851696, 2020.6516393442623]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY-136/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_x": {"value": -0.3164818662441072}, "umap_x": {"value": 6.5961533}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.636503}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.831617381686659}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -16.15756052131085}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.714719566366644}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": -0.1979733422682993}, "mds3": {"value": 2.4979163529238204}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.590206115770137}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/EGY-148/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6598360655737, "confidence": [2020.6598360655737, 2020.6598360655737]}, "tsne_x": {"value": -0.3168929084688821}, "umap_x": {"value": 6.539223}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6887587}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.831617381686659}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -16.157516525343166}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.24841908183442}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": -0.140324574642119}, "mds3": {"value": 2.402218963832992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.590206115770137}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0000433", "node_attrs": {"div": 4, "num_date": {"value": 2019.9395151903761, "confidence": [2019.928826793014, 2019.94740666514]}}, "branch_attrs": {"mutations": {"nuc": ["C14408T"]}}, "children": [{"name": "NODE_0000437", "node_attrs": {"div": 11, "num_date": {"value": 2019.9817972518315, "confidence": [2019.9629770541078, 2020.004951897338]}}, "branch_attrs": {"mutations": {"nuc": ["T445C", "C6286T", "G21255C", "C22227T", "C26801G", "C28932T", "G29645T"], "S": ["A222V"]}, "labels": {"aa": "S: A222V"}}, "children": [{"name": "NODE_0000451", "node_attrs": {"div": 12, "num_date": {"value": 2020.0059299468999, "confidence": [2019.9641547460058, 2020.018671195938]}}, "branch_attrs": {"mutations": {"nuc": ["C29366T"]}}, "children": [{"name": "NODE_0000452", "node_attrs": {"div": 15, "num_date": {"value": 2020.025956284153, "confidence": [2020.016776242467, 2020.025956284153]}}, "branch_attrs": {"mutations": {"nuc": ["G25049T", "G25062T", "C28657T"], "S": ["D1163Y", "G1167V"]}, "labels": {"aa": "S: D1163Y, G1167V"}}, "children": [{"name": "OX604816", "node_attrs": {"div": 15, "num_date": {"value": 2020.025956284153, "confidence": [2020.025956284153, 2020.025956284153]}, "tsne_x": {"value": -5.206895987743266}, "umap_x": {"value": 3.9467049}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9528279}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.696069631016582}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.970734976698935}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.597512585331652}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 11.822759689624824}, "mds3": {"value": 2.4454869522767435}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.9735388575623074}}, "branch_attrs": {"mutations": {}}}, {"name": "OA981942", "node_attrs": {"div": 16, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_x": {"value": -5.270947303289804}, "umap_x": {"value": 3.9197385}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.947023}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.004423290356729}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.049740440528351}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.005140359722828}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 13.740850714341704}, "mds3": {"value": 2.270058312417842}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1387754820467032}}, "branch_attrs": {"mutations": {"nuc": ["T7227G"]}}}]}, {"name": "NODE_0000453", "node_attrs": {"div": 16, "num_date": {"value": 2020.5860526597803, "confidence": [2020.4338843458816, 2020.727752725611]}}, "branch_attrs": {"mutations": {"nuc": ["C222T", "T20661C", "C29386T", "A29865G"]}}, "children": [{"name": "OU809417", "node_attrs": {"div": 22, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -5.804868585745118}, "umap_x": {"value": 3.27796}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1539342}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.998074540281308}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.18407302385052}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.555900271224806}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -16.62087890778395}, "mds3": {"value": 6.5157262079139056}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.129236308328039}}, "branch_attrs": {"mutations": {"nuc": ["C7834T", "C21575T", "A25443C", "T27484C", "C28011T", "G29508T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0000176", "node_attrs": {"div": 16, "num_date": {"value": 2020.6461671473241, "confidence": [2020.4597951118965, 2020.7343836097969]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OB993519", "node_attrs": {"div": 20, "num_date": {"value": 2020.8374316939892, "confidence": [2020.8374316939892, 2020.8374316939892]}, "tsne_x": {"value": -5.727464830353975}, "umap_x": {"value": 3.4093754}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1161335}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.999998331716175}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.159854935537457}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.57014598326693}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 18.363449564335124}, "mds3": {"value": 2.6268935596152407}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1351764837289885}}, "branch_attrs": {"mutations": {"nuc": ["C5000T", "C6070T", "A10858G", "G25951T"]}}}, {"name": "NODE_0000455", "node_attrs": {"div": 17, "num_date": {"value": 2020.7422278970027, "confidence": [2020.687065275697, 2020.7527322404371]}}, "branch_attrs": {"mutations": {"nuc": ["G21468T"]}}, "children": [{"name": "NZL/20CV0409/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7527322404371, "confidence": [2020.7527322404371, 2020.7527322404371]}, "tsne_x": {"value": -5.525555447958338}, "umap_x": {"value": 3.8341765}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9981092}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.802376642559199}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.105009772927888}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.539183541078526}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": -5.713715516537201}, "mds3": {"value": 5.136449026159977}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.35807381122003}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000178", "node_attrs": {"div": 17, "num_date": {"value": 2020.759438795529, "confidence": [2020.7213035445893, 2020.7636612021859]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0398/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7636612021859, "confidence": [2020.7636612021859, 2020.7636612021859]}, "tsne_x": {"value": -5.525761577724905}, "umap_x": {"value": 3.8582735}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9507713}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.802802343103186}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.105263787373149}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.97134163518325}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": 13.24257432339147}, "mds3": {"value": 2.8758160646882733}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.358393914439436}}, "branch_attrs": {"mutations": {}}}, {"name": "Switzerland/BE-ETHZ-530091/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8565573770493, "confidence": [2020.8565573770493, 2020.8565573770493]}, "tsne_x": {"value": -5.662739874443816}, "umap_x": {"value": 3.330009}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1718006}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.654910246015881}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.13424974052674}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.31564928976461}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Bern"}, "mds2": {"value": -9.811986631877296}, "mds3": {"value": 6.988885963596006}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.10266719534889}}, "branch_attrs": {"mutations": {"nuc": ["C2455T", "T10898G"]}}}]}]}]}]}]}, {"name": "NODE_0000181", "node_attrs": {"div": 11, "num_date": {"value": 2020.2401920241607, "confidence": [2020.139796472671, 2020.4309760669591]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000440", "node_attrs": {"div": 13, "num_date": {"value": 2020.358031409586, "confidence": [2020.266041344148, 2020.4635917392134]}}, "branch_attrs": {"mutations": {"nuc": ["C5170T", "G11132T"]}}, "children": [{"name": "OA995023", "node_attrs": {"div": 20, "num_date": {"value": 2020.7718579234972, "confidence": [2020.7718579234972, 2020.7718579234972]}, "tsne_x": {"value": -5.030957472360387}, "umap_x": {"value": 3.313938}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1368632}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.986748460640046}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.587907933550428}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.834233107471505}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -19.17467318315919}, "mds3": {"value": 2.358241193898292}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1304830256722432}}, "branch_attrs": {"mutations": {"nuc": ["A9409G", "C10078T", "G11417T", "C19273T", "G22051T", "G29179T", "C29247T"]}}}, {"name": "NODE_0000441", "node_attrs": {"div": 15, "num_date": {"value": 2020.422928272078, "confidence": [2020.3280464489071, 2020.4838310067032]}}, "branch_attrs": {"mutations": {"nuc": ["G4006T", "T26609C"]}}, "children": [{"name": "TUN/TUN-202019695/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.52868852459, "confidence": [2020.52868852459, 2020.52868852459]}, "tsne_x": {"value": -5.047874881851853}, "umap_x": {"value": 2.4091618}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.2572343}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.927072801317409}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.862332328651403}, "country": {"value": "Tunisia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.34403129675612}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Tunisia"}, "mds2": {"value": 21.44148027489432}, "mds3": {"value": 5.789663136476384}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -19.935776167693533}}, "branch_attrs": {"mutations": {"nuc": ["C832T", "G11083T", "C14877T", "C18582T", "G21142T", "C24863T", "C25734T", "G28337T"], "S": ["H1101Y"]}, "labels": {"aa": "S: H1101Y"}}}, {"name": "NODE_0000185", "node_attrs": {"div": 15, "num_date": {"value": 2020.5419117442036, "confidence": [2020.4553258191704, 2020.623895941953]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000186", "node_attrs": {"div": 15, "num_date": {"value": 2020.6241480029141, "confidence": [2020.468507362411, 2020.627049180328]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX688223", "node_attrs": {"div": 20, "num_date": {"value": 2020.7773224043715, "confidence": [2020.7773224043715, 2020.7773224043715]}, "tsne_x": {"value": -5.030467201393485}, "umap_x": {"value": 3.3907032}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1625035}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.857417955825849}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.708802270778778}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.31372771640564}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 18.39970566447137}, "mds3": {"value": 5.899140062403992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.063624406191774}}, "branch_attrs": {"mutations": {"nuc": ["G19999T", "G24794T", "C25624T", "C29073T", "C29686T"], "S": ["A1078S"]}, "labels": {"aa": "S: A1078S"}}}, {"name": "OA968568", "node_attrs": {"div": 15, "num_date": {"value": 2020.627049180328, "confidence": [2020.627049180328, 2020.627049180328]}, "tsne_x": {"value": -5.058480394037806}, "umap_x": {"value": 4.130353}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.89831}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.001557169464574}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.4598494215754}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.431718952263947}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Scotland"}, "mds2": {"value": 12.329224871393258}, "mds3": {"value": 1.6185867168136965}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1448856173115916}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000189", "node_attrs": {"div": 15, "num_date": {"value": 2020.588689266277, "confidence": [2020.4631926134884, 2020.6733578475144]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX797873", "node_attrs": {"div": 19, "num_date": {"value": 2020.7554644808743, "confidence": [2020.7554644808743, 2020.7554644808743]}, "tsne_x": {"value": -5.040086142291787}, "umap_x": {"value": 3.395542}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1145291}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.796753704437683}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.679800228044106}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.163599189925048}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 17.948132343456372}, "mds3": {"value": 3.640874612715424}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.049051725623191}}, "branch_attrs": {"mutations": {"nuc": ["T15078C", "A20450G", "A27609C", "C29518T"]}}}, {"name": "FRA/IHUCOVID-003467-1/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.1493150684933, "confidence": [2021.1493150684933, 2021.1493150684933]}, "tsne_x": {"value": -5.058290659431926}, "umap_x": {"value": 1.9107958}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1028411}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.583912732406014}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.937957754237177}, "country": {"value": "France"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.917032628810684}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "France"}, "mds2": {"value": -20.76369653009085}, "mds3": {"value": 8.152936808473465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 10.547932451347895}}, "branch_attrs": {"mutations": {"nuc": ["C1314T", "G3328T", "A14943C", "C16887T", "C17436T", "T18311C", "C20703T", "G28195A", "A28267C", "C28606T", "A28859G"]}}}]}]}]}]}, {"name": "NODE_0000190", "node_attrs": {"div": 11, "num_date": {"value": 2020.4134690206618, "confidence": [2020.227679451005, 2020.6250021283652]}}, "branch_attrs": {"mutations": {"nuc": ["C29838T"]}}, "children": [{"name": "NODE_0000438", "node_attrs": {"div": 14, "num_date": {"value": 2020.5425961181381, "confidence": [2020.3552864546652, 2020.6569292714405]}}, "branch_attrs": {"mutations": {"nuc": ["C1513T", "G22346T", "C22377T"], "S": ["A262S", "P272L"]}, "labels": {"aa": "S: A262S, P272L"}}, "children": [{"name": "TWN/CGMH-CGU-32/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.681693989071, "confidence": [2020.681693989071, 2020.681693989071]}, "tsne_x": {"value": -4.646602579036791}, "umap_x": {"value": 3.2928376}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1903105}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.56000791443797}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.22125232437332}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.64155573125339}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Taiwan"}, "mds2": {"value": 15.886018218083192}, "mds3": {"value": 3.92410258639523}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.55104059792691}}, "branch_attrs": {"mutations": {"nuc": ["C6927T", "C7716T", "G20302A", "C27532T"]}}}, {"name": "OD914440", "node_attrs": {"div": 24, "num_date": {"value": 2020.9603825136612, "confidence": [2020.9603825136612, 2020.9603825136612]}, "tsne_x": {"value": -4.284570727698222}, "umap_x": {"value": 2.4920218}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.3752239}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.938294942041508}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177.87"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.318234691020663}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.464446348319125}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 23.718327772564724}, "mds3": {"value": 5.102969391058613}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1686508896428892}}, "branch_attrs": {"mutations": {"nuc": ["C593T", "C1288T", "C2644T", "C2910T", "C4276T", "T4811C", "C10408T", "C28087T", "C28706T", "C29095T"]}}}]}, {"name": "NODE_0000193", "node_attrs": {"div": 11, "num_date": {"value": 2020.5443151047325, "confidence": [2020.1905061319828, 2020.7173999819559]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000198", "node_attrs": {"div": 11, "num_date": {"value": 2020.5883452007863, "confidence": [2020.1962559667083, 2020.7320907197836]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0665/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_x": {"value": -5.731913915145995}, "umap_x": {"value": 3.0815978}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.2387023}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.808465102930955}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177.73"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.914377648805946}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.327822861657733}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": 18.052564414945657}, "mds3": {"value": 4.123658865306823}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.375803331989289}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "A2473G", "C4113T", "T7543C", "C13671T", "C24138T", "A24774T", "C26060A", "C29754T"], "S": ["T859I", "Q1071L"]}, "labels": {"aa": "S: T859I, Q1071L"}}}, {"name": "NZL/20CV0571/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8784153005465, "confidence": [2020.8784153005465, 2020.8784153005465]}, "tsne_x": {"value": -5.016187529912669}, "umap_x": {"value": 3.9312038}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9418877}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 44.87951107909116}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.077885729345194}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 12.884333537377485}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": -6.838953635153691}, "mds3": {"value": 7.252526421023433}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.398464502581366}}, "branch_attrs": {"mutations": {"nuc": ["C3738T", "G11083T", "A13722T", "C26752T", "G29474T"]}}}]}, {"name": "NODE_0000447", "node_attrs": {"div": 13, "num_date": {"value": 2020.7031718667688, "confidence": [2020.5337392706176, 2020.7775805768583]}}, "branch_attrs": {"mutations": {"nuc": ["G23311C", "T29185A"], "S": ["E583D"]}, "labels": {"aa": "S: E583D"}}, "children": [{"name": "NZL/20CV0424/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.7800546448088, "confidence": [2020.7800546448088, 2020.7800546448088]}, "tsne_x": {"value": -5.11513680404815}, "umap_x": {"value": 3.9157043}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.0079393}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.25664740828069}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.05224418507896}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 15.781796667173506}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": -3.685157270157332}, "mds3": {"value": 4.878643158809814}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8807651449396234}}, "branch_attrs": {"mutations": {"nuc": ["C751T", "C17004T"]}}}, {"name": "NODE_0000448", "node_attrs": {"div": 14, "num_date": {"value": 2020.7821546254077, "confidence": [2020.6344043306265, 2020.8456284153006]}}, "branch_attrs": {"mutations": {"nuc": ["G29027T"]}}, "children": [{"name": "NZL/20CV0664/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9439890710382, "confidence": [2020.9439890710382, 2020.9439890710382]}, "tsne_x": {"value": -5.150585646626495}, "umap_x": {"value": 3.4089797}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1315782}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.82599216920136}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.171058853685713}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.633500544141476}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": -12.09830270354398}, "mds3": {"value": 3.337637176001018}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.507766773109026}}, "branch_attrs": {"mutations": {"nuc": ["A7795G", "C15720T", "C18032T", "C25000T"]}}}, {"name": "OC996978", "node_attrs": {"div": 15, "num_date": {"value": 2020.8456284153006, "confidence": [2020.8456284153006, 2020.8456284153006]}, "tsne_x": {"value": -5.1177815948630565}, "umap_x": {"value": 4.0593605}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9125373}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.00199930944327}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -9.063687544428314}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.352072919524066}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -11.991827902124342}, "mds3": {"value": -0.4108238702020904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1414596925767214}}, "branch_attrs": {"mutations": {"nuc": ["G19816A"]}}}]}]}]}]}]}, {"name": "NODE_0000457", "node_attrs": {"div": 12, "num_date": {"value": 2019.9994914485599, "confidence": [2019.9636889076814, 2020.0102418854726]}}, "branch_attrs": {"mutations": {"nuc": ["C27944T"]}}, "children": [{"name": "NODE_0000202", "node_attrs": {"div": 18, "num_date": {"value": 2020.6075790595335, "confidence": [2020.5032261408617, 2020.7031466724552]}}, "branch_attrs": {"mutations": {"nuc": ["G7C", "G8C", "T9A", "T10C", "T11C", "A29860C"]}}, "children": [{"name": "OA994258", "node_attrs": {"div": 20, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_x": {"value": -5.0264775571455615}, "umap_x": {"value": 4.265002}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.882672}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.000858535537702}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.793304092124579}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.340750817289562}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 10.72250695239432}, "mds3": {"value": 1.672334629407758}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1379991274962535}}, "branch_attrs": {"mutations": {"nuc": ["T16926C", "G27467C"]}}}, {"name": "NODE_0000205", "node_attrs": {"div": 18, "num_date": {"value": 2020.6514971380157, "confidence": [2020.5191112230043, 2020.7394004742623]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OB998211", "node_attrs": {"div": 25, "num_date": {"value": 2020.8565573770493, "confidence": [2020.8565573770493, 2020.8565573770493]}, "tsne_x": {"value": -4.765395239616638}, "umap_x": {"value": 3.4108694}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.112833}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.008466702871289}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.712919011604656}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.453993618787392}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 18.001491090519185}, "mds3": {"value": 2.825483050907252}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0859560543208634}}, "branch_attrs": {"mutations": {"nuc": ["C66T", "A1987G", "G10870T", "A11781G", "G17334T", "C25614T", "G28628T"]}}}, {"name": "NODE_0000207", "node_attrs": {"div": 18, "num_date": {"value": 2020.704658735095, "confidence": [2020.5265974185668, 2020.782610204558]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KOR/KCDC03-NCCP43346/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.1493150684933, "confidence": [2021.1493150684933, 2021.1493150684933]}, "tsne_x": {"value": -5.039856847960794}, "umap_x": {"value": 3.8453333}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9801223}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.0508204225106414}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.740022083179133}, "country": {"value": "South Korea"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.756005604325701}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "South Korea"}, "mds2": {"value": -13.924533130129516}, "mds3": {"value": 1.7286609767235472}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.181976726514565}}, "branch_attrs": {"mutations": {"nuc": ["C10138T", "G28083T", "G28378T"]}}}, {"name": "NZL/20CV0567/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.870218579235, "confidence": [2020.870218579235, 2020.870218579235]}, "tsne_x": {"value": -4.9343448185365855}, "umap_x": {"value": 3.813017}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.0061686}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 44.94260914858588}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177.81"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.764776270128667}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 10.395751755866746}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": 14.770364362622749}, "mds3": {"value": 3.319219991530559}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.37586900348081}}, "branch_attrs": {"mutations": {"nuc": ["C1962T", "A4166G", "C12119T", "A17332G", "C25889T"]}}}]}]}]}, {"name": "NODE_0000461", "node_attrs": {"div": 13, "num_date": {"value": 2020.0080857091407, "confidence": [2019.9890913950685, 2020.0104459113275]}}, "branch_attrs": {"mutations": {"nuc": ["G204T"]}}, "children": [{"name": "NODE_0000462", "node_attrs": {"div": 16, "num_date": {"value": 2020.6486585848518, "confidence": [2020.4970556120954, 2020.717213114754]}}, "branch_attrs": {"mutations": {"nuc": ["C6807T", "C7926T", "C9745T"]}}, "children": [{"name": "OA999362", "node_attrs": {"div": 17, "num_date": {"value": 2020.717213114754, "confidence": [2020.717213114754, 2020.717213114754]}, "tsne_x": {"value": -4.861437085578244}, "umap_x": {"value": 3.8500152}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9321828}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.041143145993654}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.44263443342005}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.31346688707955}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -8.764435531508363}, "mds3": {"value": 8.794807827614537}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.652549001869235}}, "branch_attrs": {"mutations": {"nuc": ["G26589A"]}}}, {"name": "NODE_0000463", "node_attrs": {"div": 17, "num_date": {"value": 2020.7327697880974, "confidence": [2020.5922193024087, 2020.8103833535931]}}, "branch_attrs": {"mutations": {"nuc": ["C20178T"]}}, "children": [{"name": "OU805777", "node_attrs": {"div": 21, "num_date": {"value": 2021.0232876712328, "confidence": [2021.0232876712328, 2021.0232876712328]}, "tsne_x": {"value": -4.607486487716053}, "umap_x": {"value": 2.8110144}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.2438507}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.178784834602724}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1.177.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.239057309353727}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.241917318224807}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -14.684340853835138}, "mds3": {"value": 5.913298366598625}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.08851445270787}}, "branch_attrs": {"mutations": {"nuc": ["G599T", "C12043T", "C22530T", "C24382T"], "S": ["T323I"]}, "labels": {"aa": "S: T323I"}}}, {"name": "NZL/20CV0537/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8483606557377, "confidence": [2020.8483606557377, 2020.8483606557377]}, "tsne_x": {"value": -4.666507377807975}, "umap_x": {"value": 3.204844}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1785548}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 11.782893480469165}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.291072259871603}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.760111344657336}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": 17.815592399484277}, "mds3": {"value": 7.424440583818808}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.843054624308899}}, "branch_attrs": {"mutations": {"nuc": ["G3308A", "C15216T", "A22310T"], "S": ["T250S"]}, "labels": {"aa": "S: T250S"}}}]}]}, {"name": "NODE_0000464", "node_attrs": {"div": 14, "num_date": {"value": 2020.0083237310446, "confidence": [2020.0038348710543, 2020.0168497441957]}}, "branch_attrs": {"mutations": {"nuc": ["C21614T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}, "children": [{"name": "NODE_0000469", "node_attrs": {"div": 15, "num_date": {"value": 2020.017507361278, "confidence": [2020.0117615787522, 2020.0253067735323]}}, "branch_attrs": {"mutations": {"nuc": ["C11396T"]}}, "children": [{"name": "OX593350", "node_attrs": {"div": 17, "num_date": {"value": 2020.025956284153, "confidence": [2020.025956284153, 2020.025956284153]}, "tsne_x": {"value": -4.947260317948326}, "umap_x": {"value": 3.705151}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.0650322}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 34.264608227151484}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.403243393966637}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 17.144205095529582}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -7.201892549193228}, "mds3": {"value": 5.6863688133049815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.698093317177809}}, "branch_attrs": {"mutations": {"nuc": ["C1057T", "C11747T"]}}}, {"name": "NODE_0000213", "node_attrs": {"div": 15, "num_date": {"value": 2020.5870903335397, "confidence": [2020.249117541144, 2020.726938672506]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD916645", "node_attrs": {"div": 18, "num_date": {"value": 2020.9494535519125, "confidence": [2020.9494535519125, 2020.9494535519125]}, "tsne_x": {"value": -4.95101135673505}, "umap_x": {"value": 3.7757425}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.006068}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.99527775247861}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.344671389181775}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.885034353437389}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -15.681240635502649}, "mds3": {"value": 2.333865944282994}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.125330891480318}}, "branch_attrs": {"mutations": {"nuc": ["C4686T", "A16107G", "A20755G"]}}}, {"name": "OX984340", "node_attrs": {"div": 20, "num_date": {"value": 2020.7937158469945, "confidence": [2020.7937158469945, 2020.7937158469945]}, "tsne_x": {"value": -4.946643470840624}, "umap_x": {"value": 3.2705736}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1681612}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.203072731978762}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.198759787852653}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.937954770430595}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -16.123227078849876}, "mds3": {"value": 5.646461929407515}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.336580453633877}}, "branch_attrs": {"mutations": {"nuc": ["C4058T", "C12183T", "A12759G", "A16925G", "C25344T"], "S": ["S1261F"]}, "labels": {"aa": "S: S1261F"}}}]}]}, {"name": "NODE_0000216", "node_attrs": {"div": 14, "num_date": {"value": 2020.5453252393982, "confidence": [2020.4337330018006, 2020.639016320164]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000465", "node_attrs": {"div": 15, "num_date": {"value": 2020.6489071038252, "confidence": [2020.587446450407, 2020.6489071038252]}}, "branch_attrs": {"mutations": {"nuc": ["C15480T"]}}, "children": [{"name": "OA973998", "node_attrs": {"div": 15, "num_date": {"value": 2020.6489071038252, "confidence": [2020.6489071038252, 2020.6489071038252]}, "tsne_x": {"value": -4.974302996841119}, "umap_x": {"value": 4.1310043}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9021947}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.998820671798528}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.519956214971089}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.281782897757319}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 11.801868452567494}, "mds3": {"value": 1.853408890070828}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1267917489983477}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000218", "node_attrs": {"div": 15, "num_date": {"value": 2020.6500521632577, "confidence": [2020.609059136948, 2020.7253672338902]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU800575", "node_attrs": {"div": 17, "num_date": {"value": 2020.8101092896175, "confidence": [2020.8101092896175, 2020.8101092896175]}, "tsne_x": {"value": -4.95903361574877}, "umap_x": {"value": 3.7477908}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.040864}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.789686391332826}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.405501668244286}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.827552505867724}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 13.863932557385697}, "mds3": {"value": 3.061620555453947}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.6614851404966}}, "branch_attrs": {"mutations": {"nuc": ["C3884T", "C4698T"]}}}, {"name": "OX555722", "node_attrs": {"div": 20, "num_date": {"value": 2020.8456284153006, "confidence": [2020.8456284153006, 2020.8456284153006]}, "tsne_x": {"value": -4.939357654199054}, "umap_x": {"value": 3.1732025}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.17475}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.168150176622486}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1.177.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.223933522235441}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.660670574286893}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Wales"}, "mds2": {"value": -12.789877527477804}, "mds3": {"value": 5.843062333538289}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.5544170266369015}}, "branch_attrs": {"mutations": {"nuc": ["A257G", "C6941T", "A16344G", "C28087T", "C29167T"]}}}]}]}, {"name": "NODE_0000219", "node_attrs": {"div": 14, "num_date": {"value": 2020.586916380462, "confidence": [2020.4657043815512, 2020.6939633790757]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA984318", "node_attrs": {"div": 17, "num_date": {"value": 2020.7254098360656, "confidence": [2020.7254098360656, 2020.7254098360656]}, "tsne_x": {"value": -4.947282344178485}, "umap_x": {"value": 3.8515403}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9553884}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.998588844163689}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177.5"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.42537666950383}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.666104917562588}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Scotland"}, "mds2": {"value": -9.265424743516077}, "mds3": {"value": 6.483475961378376}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1266966882546945}}, "branch_attrs": {"mutations": {"nuc": ["C593T", "T24769C", "C25460T"]}}}, {"name": "NODE_0000220", "node_attrs": {"div": 14, "num_date": {"value": 2020.6208496142722, "confidence": [2020.4728091274808, 2020.7067763085875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0630/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.9193989071039, "confidence": [2020.9193989071039, 2020.9193989071039]}, "tsne_x": {"value": -4.958759327466051}, "umap_x": {"value": 3.0447469}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.2327065}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.996558392496084}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.111514374360768}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.06089518596864}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Auckland"}, "mds2": {"value": -15.135130944467043}, "mds3": {"value": 5.43100189462091}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.10254323376941}}, "branch_attrs": {"mutations": {"nuc": ["A3405G", "C12733T", "G18816T", "A25296G", "G27441T", "G28077T", "C28409T"], "S": ["K1245R"]}, "labels": {"aa": "S: K1245R"}}}, {"name": "OX589196", "node_attrs": {"div": 18, "num_date": {"value": 2020.782786885246, "confidence": [2020.782786885246, 2020.782786885246]}, "tsne_x": {"value": -4.950348461852399}, "umap_x": {"value": 3.4334204}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.0967226}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.480434795011282}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.355814908222007}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.927586103163788}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Northern Ireland"}, "mds2": {"value": 15.118812156817818}, "mds3": {"value": 3.463538844490813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.173242444113704}}, "branch_attrs": {"mutations": {"nuc": ["C7044T", "T9151A", "G22051A", "C25583T"]}}}]}]}]}, {"name": "NODE_0000473", "node_attrs": {"div": 15, "num_date": {"value": 2020.017507361278, "confidence": [2020.0117783851422, 2020.0252843227295]}}, "branch_attrs": {"mutations": {"nuc": ["C24334T"]}}, "children": [{"name": "OX646281", "node_attrs": {"div": 17, "num_date": {"value": 2020.025956284153, "confidence": [2020.025956284153, 2020.025956284153]}, "tsne_x": {"value": -4.945125028082474}, "umap_x": {"value": 3.849128}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9460826}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 41.166578666525496}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.384000134791133}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 11.619807112632664}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -9.055784400823514}, "mds3": {"value": 8.26144920904306}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.7828035639092812}}, "branch_attrs": {"mutations": {"nuc": ["C1959T", "C26464T"]}}}, {"name": "NODE_0000222", "node_attrs": {"div": 15, "num_date": {"value": 2020.5897424508032, "confidence": [2020.4788300167015, 2020.7076441144434]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000224", "node_attrs": {"div": 15, "num_date": {"value": 2020.6661516363845, "confidence": [2020.5176466781625, 2020.717213114754]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX868394", "node_attrs": {"div": 16, "num_date": {"value": 2020.717213114754, "confidence": [2020.717213114754, 2020.717213114754]}, "tsne_x": {"value": -4.953851046380718}, "umap_x": {"value": 4.085993}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9059684}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 31.346641390318627}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.431075898057683}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 8.1912121369795}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 11.8305714747343}, "mds3": {"value": 2.1594905881081243}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.777984665327956}}, "branch_attrs": {"mutations": {"nuc": ["C21897T"], "S": ["S112L"]}, "labels": {"aa": "S: S112L"}}}, {"name": "NODE_0000227", "node_attrs": {"div": 15, "num_date": {"value": 2020.7034757154886, "confidence": [2020.520630733563, 2020.7603763941065]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD922725", "node_attrs": {"div": 18, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -4.940723870666392}, "umap_x": {"value": 3.7384336}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.0791404}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.996610457815371}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.34133777492057}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.23837612826188}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 16.15314530022932}, "mds3": {"value": 2.4005078466711507}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1270399386371044}}, "branch_attrs": {"mutations": {"nuc": ["C6927T", "C10277T", "A16962G"]}}}, {"name": "OB994580", "node_attrs": {"div": 20, "num_date": {"value": 2020.8428961748634, "confidence": [2020.8428961748634, 2020.8428961748634]}, "tsne_x": {"value": -4.938379666118628}, "umap_x": {"value": 3.296614}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.149422}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.998581098470756}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.200526832767368}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.363698333384832}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 18.87072747192673}, "mds3": {"value": 3.0098839962027872}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1282847663356041}}, "branch_attrs": {"mutations": {"nuc": ["C1616T", "C7749T", "C12880T", "C13424A", "A14185G"]}}}]}]}, {"name": "NODE_0000475", "node_attrs": {"div": 17, "num_date": {"value": 2020.7240290322677, "confidence": [2020.6369458361287, 2020.804058583147]}}, "branch_attrs": {"mutations": {"nuc": ["A11533G", "T26424C"]}}, "children": [{"name": "OD898581", "node_attrs": {"div": 21, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -4.938009617329117}, "umap_x": {"value": 3.2427073}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.1906383}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.994835999810007}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.112435530221566}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.85136414960368}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": 19.970487241527564}, "mds3": {"value": 3.570012463604766}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1242033319827182}}, "branch_attrs": {"mutations": {"nuc": ["G25947T", "C27213T", "G27463T", "G28857T"]}}}, {"name": "NODE_0000229", "node_attrs": {"div": 17, "num_date": {"value": 2020.853825136612, "confidence": [2020.7554574090043, 2020.853825136612]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OB996563", "node_attrs": {"div": 17, "num_date": {"value": 2020.853825136612, "confidence": [2020.853825136612, 2020.853825136612]}, "tsne_x": {"value": -4.953972333822656}, "umap_x": {"value": 3.8457031}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -1.9574275}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.945084948191733}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.365520543156236}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.553129509509728}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "England"}, "mds2": {"value": -14.715590669455736}, "mds3": {"value": -0.0604488709921528}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.2865338268889049}}, "branch_attrs": {"mutations": {}}}, {"name": "OX599234", "node_attrs": {"div": 21, "num_date": {"value": 2021.127397260274, "confidence": [2021.127397260274, 2021.127397260274]}, "tsne_x": {"value": -4.935571793051224}, "umap_x": {"value": 2.964797}, "Nextstrain_clade": {"value": "20E (EU1)"}, "umap_y": {"value": -2.2387671}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.428255104490222}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "tsne_y": {"value": -8.115827276741406}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.25765880836546}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "division": {"value": "Wales"}, "mds2": {"value": 18.515697026049523}, "mds3": {"value": 4.058201148271065}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.375697673620175}}, "branch_attrs": {"mutations": {"nuc": ["T10663C", "C21707T", "C27643T", "G29508A"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000734", "node_attrs": {"div": 5, "num_date": {"value": 2019.9496755756875, "confidence": [2019.9381712389145, 2019.9518051301043]}}, "branch_attrs": {"mutations": {"nuc": ["G25563T"]}}, "children": [{"name": "NODE_0000231", "node_attrs": {"div": 5, "num_date": {"value": 2020.0259188781074, "confidence": [2019.9881415353798, 2020.0696167483952]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000233", "node_attrs": {"div": 5, "num_date": {"value": 2020.0572025720437, "confidence": [2020.0179805444072, 2020.190815960846]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000738", "node_attrs": {"div": 7, "num_date": {"value": 2020.181606809033, "confidence": [2020.1314511846522, 2020.210877746401]}}, "branch_attrs": {"mutations": {"nuc": ["G1319A", "C8389T"]}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0018/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_x": {"value": -2.8289513064642167}, "umap_x": {"value": 6.970691}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3202646}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.922312114180726}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.84069666110029}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.690160970010192}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 2.614997762717385}, "mds3": {"value": 1.2458816594847262}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.94859054019036}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "G14268A"]}}}, {"name": "NODE_0000208", "node_attrs": {"div": 7, "num_date": {"value": 2020.1969799717856, "confidence": [2020.168405602137, 2020.2267836718038]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0104/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_x": {"value": -2.972062430141158}, "umap_x": {"value": 7.2460895}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1556046}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.477868985137705}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.796144622205045}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.129049445304804}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.6940841123041808}, "mds3": {"value": 1.545692833981763}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 16.582562306397275}}, "branch_attrs": {"mutations": {"nuc": ["C10450T"]}}}, {"name": "NODE_0000236", "node_attrs": {"div": 7, "num_date": {"value": 2020.215315834526, "confidence": [2020.18913888657, 2020.2258517379023]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000237", "node_attrs": {"div": 7, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2189928599803, 2020.2554644808743]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0131/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2554644808743, 2020.2554644808743]}, "tsne_x": {"value": -3.104639062623184}, "umap_x": {"value": 7.431436}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0194923}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.833988425976557}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.73833264350445}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.762724954011954}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.1885553148581622}, "mds3": {"value": 0.4707230462850522}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.414282534971134}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-PUC_MVL_0149/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2581967213114, "confidence": [2020.2581967213114, 2020.2581967213114]}, "tsne_x": {"value": -3.111760728189445}, "umap_x": {"value": 7.4868655}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.99189377}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.230130724431901}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.727812585154142}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.419054268643001}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.3316823068925137}, "mds3": {"value": 0.4553394148569519}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 15.891597074307766}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000238", "node_attrs": {"div": 7, "num_date": {"value": 2020.2155864366307, "confidence": [2020.2000378645948, 2020.2310155219534]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0165/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2745901639344, "confidence": [2020.2745901639344, 2020.2745901639344]}, "tsne_x": {"value": -2.815114604582885}, "umap_x": {"value": 6.647467}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5338154}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.961207802114308}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.840572216431443}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.415591993754681}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.6882821974971385}, "mds3": {"value": 0.7259109414123587}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.180114820363984}}, "branch_attrs": {"mutations": {"nuc": ["C1346T", "C10228T"]}}}, {"name": "NODE_0000739", "node_attrs": {"div": 8, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2241070372752, 2020.2363387978141]}}, "branch_attrs": {"mutations": {"nuc": ["C25810T"]}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0171/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2773224043715, "confidence": [2020.2773224043715, 2020.2773224043715]}, "tsne_x": {"value": -2.797207638518396}, "umap_x": {"value": 6.6516705}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5179195}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.93805468495242}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.84947894250338}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.35023513795408}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.768399135088456}, "mds3": {"value": 0.7657307653613686}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.018934164763216}}, "branch_attrs": {"mutations": {"nuc": ["C25433T"]}}}, {"name": "CHL/Santiago-PUC_MVL_0081/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2445355191257, "confidence": [2020.2445355191257, 2020.2445355191257]}, "tsne_x": {"value": -2.926558358845467}, "umap_x": {"value": 7.278615}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0894072}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.834168017105847}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.80861013469618}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.215418466574631}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.6573927050748651}, "mds3": {"value": 0.8904654283828436}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.414504365897752}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-PUC_MVL_0036/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2363387978141, 2020.2363387978141]}, "tsne_x": {"value": -2.9128373414484714}, "umap_x": {"value": 7.0395412}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.291682}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.938214408646293}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.805258359184071}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.837086880949302}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.4102130510872204}, "mds3": {"value": 0.5724131033811541}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.018840195730268}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000240", "node_attrs": {"div": 8, "num_date": {"value": 2020.2412744851968, "confidence": [2020.2340188564697, 2020.2800546448088]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0175/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2800546448088, "confidence": [2020.2800546448088, 2020.2800546448088]}, "tsne_x": {"value": -2.917271245853735}, "umap_x": {"value": 7.1149173}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2401396}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.913270983258679}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.807584021372175}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.333864810763551}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.7213385015633564}, "mds3": {"value": 0.7231405384506454}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.875827245511148}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Curico-PUC_MVL_0186/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2909836065573, "confidence": [2020.2909836065573, 2020.2909836065573]}, "tsne_x": {"value": -2.801452831348129}, "umap_x": {"value": 6.954494}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3063487}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.284989136496833}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.110"}, "tsne_y": {"value": -15.845226499866827}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.795060541962245}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 2.638108418923384}, "mds3": {"value": 1.0809817753946638}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 8.781340589980589}}, "branch_attrs": {"mutations": {"nuc": ["G1730A"]}}}]}]}]}]}]}]}, {"name": "NODE_0000241", "node_attrs": {"div": 5, "num_date": {"value": 2020.1563651077136, "confidence": [2020.0932519983471, 2020.2165337021006]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000242", "node_attrs": {"div": 5, "num_date": {"value": 2020.23907055011, "confidence": [2020.175285910699, 2020.2913952823783]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU996009", "node_attrs": {"div": 7, "num_date": {"value": 2020.3101092896175, "confidence": [2020.3101092896175, 2020.3101092896175]}, "tsne_x": {"value": -3.20687728342294}, "umap_x": {"value": 7.6505504}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.831036}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.9303908605049935}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.434842032721164}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.439966905151936}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mecca"}, "mds2": {"value": 1.146694991374177}, "mds3": {"value": 0.695364284106738}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.97548570930551}}, "branch_attrs": {"mutations": {"nuc": ["A20094G", "C26735T"]}}}, {"name": "NODE_0000245", "node_attrs": {"div": 5, "num_date": {"value": 2020.3608858703808, "confidence": [2020.2649763830943, 2020.402929821117]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PAK/SARS-CoV-2_1/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.405737704918, "confidence": [2020.405737704918, 2020.405737704918]}, "tsne_x": {"value": -3.5955528951243485}, "umap_x": {"value": 7.7424703}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.7774752}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.417991538811972}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -15.795144068432364}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.53263904123484}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Punjab PK"}, "mds2": {"value": 0.6728200201340286}, "mds3": {"value": 0.1549361108860046}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.598513130914752}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/CUNCI-HGC5I016/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_x": {"value": -3.6043618165139537}, "umap_x": {"value": 7.578753}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.8674738}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.455358243531699}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -15.587130093709437}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.720438751522942}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": 1.0691511110326486}, "mds3": {"value": 0.5415315482449575}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.6941911665658407}}, "branch_attrs": {"mutations": {"nuc": ["A6081G", "C21549T"]}}}]}]}, {"name": "NODE_0000810", "node_attrs": {"div": 6, "num_date": {"value": 2020.200337666497, "confidence": [2020.1565750587017, 2020.226534759428]}}, "branch_attrs": {"mutations": {"nuc": ["C2416T"]}}, "children": [{"name": "FRA/IHUCOVID-014802-Nova1M/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3319672131147, "confidence": [2020.3319672131147, 2020.3319672131147]}, "tsne_x": {"value": -3.7642402792491376}, "umap_x": {"value": 6.2422056}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6585053}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 20.118638210197524}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.413297341396593}, "country": {"value": "France"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 5.202836815115146}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "France"}, "mds2": {"value": -0.6586368835822636}, "mds3": {"value": 5.32239285616808}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.59502228619855}}, "branch_attrs": {"mutations": {"nuc": ["C6401T", "C13458T", "G18412T", "C19813T", "C20946T", "C23604T"], "S": ["P681L"]}, "labels": {"aa": "S: P681L"}}}, {"name": "NODE_0000249", "node_attrs": {"div": 6, "num_date": {"value": 2020.215675392746, "confidence": [2020.1810172361238, 2020.2267757018783]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000812", "node_attrs": {"div": 10, "num_date": {"value": 2020.6398918330406, "confidence": [2020.5021416593877, 2020.7112869410098]}}, "branch_attrs": {"mutations": {"nuc": ["C16616T", "C26885T", "C27603T", "C28887T"]}}, "children": [{"name": "USA/MA-MASPHL-00744/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.7281420765028, "confidence": [2020.7281420765028, 2020.7281420765028]}, "tsne_x": {"value": -5.156663860162354}, "umap_x": {"value": 5.6879177}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.837658}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.837853398061993}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.46667993514056}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.63576571924057}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 3.758279614089956}, "mds3": {"value": 3.2368604906946894}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.0368986996103375}}, "branch_attrs": {"mutations": {"nuc": ["C12068T", "G19101T"]}}}, {"name": "NODE_0000251", "node_attrs": {"div": 10, "num_date": {"value": 2020.6691412520936, "confidence": [2020.5231610107774, 2020.7449725457927]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-2942/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8838797814208, "confidence": [2020.8838797814208, 2020.8838797814208]}, "tsne_x": {"value": -5.228174050680946}, "umap_x": {"value": 4.3024282}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.424692}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 42.87482774516647}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.356867947880906}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 16.09853875766988}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Florida"}, "mds2": {"value": -0.8349904837612008}, "mds3": {"value": 8.246297698678024}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.04039345706022}}, "branch_attrs": {"mutations": {"nuc": ["C364T", "C1387T", "G3338T", "A7933G", "C14599T", "C26681T"]}}}, {"name": "USA/TG761734/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.9330601092897, "confidence": [2020.9330601092897, 2020.9330601092897]}, "tsne_x": {"value": -5.191974723458879}, "umap_x": {"value": 5.2784495}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.024539}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.706659025106}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.42362569120793}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 7.313375844908841}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 8.36597661286027}, "mds3": {"value": 4.110287201277213}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.2434991462068443}}, "branch_attrs": {"mutations": {"nuc": ["C1812T", "C6990T", "T26546C", "G29759T"]}}}]}]}, {"name": "NODE_0000814", "node_attrs": {"div": 7, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2164730991685, 2020.2363387978141]}}, "branch_attrs": {"mutations": {"nuc": ["G8371T"]}}, "children": [{"name": "TUN/COV0425/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2363387978141, 2020.2363387978141]}, "tsne_x": {"value": -3.608577638925368}, "umap_x": {"value": 7.2886257}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1177824}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.355509472479608}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.691173210657563}, "country": {"value": "Tunisia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.420987421070228}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tunisia"}, "mds2": {"value": 1.386014366324239}, "mds3": {"value": 0.7005853446201141}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.868487337124296}}, "branch_attrs": {"mutations": {"nuc": ["C16-", "T17-", "T18-", "C19-", "C20-", "C21-", "A22-", "G23-", "G24-", "T25-", "A26-", "A27-", "C28-", "A29-", "A30-", "A31-", "C32-", "C33-", "A34-", "A35-", "C36-", "C37-", "A38-", "A39-", "C40-", "T41-"]}}}, {"name": "NODE_0000228", "node_attrs": {"div": 7, "num_date": {"value": 2020.236732873619, "confidence": [2020.2192275701816, 2020.3090310719076]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/600023154_S29/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_x": {"value": -3.7130229626969857}, "umap_x": {"value": 4.397727}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.396141}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.247211557219181}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.718864440531656}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.237476207447408}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bahrain"}, "mds2": {"value": -4.650962036748957}, "mds3": {"value": 6.317176808784759}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.322981803010207}}, "branch_attrs": {"mutations": {"nuc": ["G1550A", "G2494A", "C2937T", "G7320A", "G20247T", "C23893T", "T27499C", "T28120C", "A28959G"]}}}, {"name": "NODE_0000816", "node_attrs": {"div": 8, "num_date": {"value": 2020.322186776668, "confidence": [2020.2203968859906, 2020.3641197181025]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "PAK/SARS-CoV-2_75/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4112021857923, "confidence": [2020.4112021857923, 2020.4112021857923]}, "tsne_x": {"value": -3.693062466194185}, "umap_x": {"value": 4.8685}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.195233}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.914377321893427}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.83803472459389}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.71764509160988}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Islamabad Capital Territory"}, "mds2": {"value": -1.2033411655434767}, "mds3": {"value": 2.80311116863883}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -20.00365098306759}}, "branch_attrs": {"mutations": {"nuc": ["C2508T", "T18603C", "C22477T", "C26645T", "T27912A", "G28878A"]}}}, {"name": "BHR/920407807/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.7117486338798, "confidence": [2020.7117486338798, 2020.7117486338798]}, "tsne_x": {"value": -3.637478368151354}, "umap_x": {"value": 4.8220735}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.228229}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.577154588932617}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.784885673328738}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.618423983249404}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bahrain"}, "mds2": {"value": -0.9716388606927678}, "mds3": {"value": 4.988235646330028}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.257026789301962}}, "branch_attrs": {"mutations": {"nuc": ["C2937T", "C4754T", "C17172T", "C17285T", "A24823C", "C29304T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000748", "node_attrs": {"div": 6, "num_date": {"value": 2020.0585789621318, "confidence": [2020.0288727222098, 2020.0821029295948]}}, "branch_attrs": {"mutations": {"nuc": ["C18877T"]}}, "children": [{"name": "NODE_0000256", "node_attrs": {"div": 6, "num_date": {"value": 2020.2003296675207, "confidence": [2020.1472095991166, 2020.214480874317]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0023/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.214480874317, "confidence": [2020.214480874317, 2020.214480874317]}, "tsne_x": {"value": -3.310173665179052}, "umap_x": {"value": 7.9269814}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.64651245}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.857204064940004}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.26279259799363}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.463358370748125}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.8904057198171186}, "mds3": {"value": 0.3389289167900656}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.57295693216378}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000257", "node_attrs": {"div": 6, "num_date": {"value": 2020.2153886975934, "confidence": [2020.1882336630988, 2020.2253503481738]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000258", "node_attrs": {"div": 6, "num_date": {"value": 2020.2249089755169, "confidence": [2020.2037350849466, 2020.2281420765028]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-MGH-03627/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.282786885246, "confidence": [2020.282786885246, 2020.282786885246]}, "tsne_x": {"value": -3.2096002990410546}, "umap_x": {"value": 7.7202415}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.79009974}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 47.14227748494371}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.502328684832094}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 3.3113684311150444}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 1.2557771913105376}, "mds3": {"value": 1.9780903000055297}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.5507706286330234}}, "branch_attrs": {"mutations": {"nuc": ["G105T", "G19962A"]}}}, {"name": "OV039945", "node_attrs": {"div": 6, "num_date": {"value": 2020.2281420765028, "confidence": [2020.2281420765028, 2020.2281420765028]}, "tsne_x": {"value": -3.293248518468881}, "umap_x": {"value": 7.7237153}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.79245293}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.65792471102237}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.299960172657368}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.152998651373424}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Makkah"}, "mds2": {"value": 0.954167017062326}, "mds3": {"value": 0.4196076714474146}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.6826203735436}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000259", "node_attrs": {"div": 6, "num_date": {"value": 2020.2246807154534, "confidence": [2020.195808345755, 2020.2605284397491]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV039495", "node_attrs": {"div": 7, "num_date": {"value": 2020.2636612021859, "confidence": [2020.2636612021859, 2020.2636612021859]}, "tsne_x": {"value": -3.199210337280321}, "umap_x": {"value": 7.4203315}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0258353}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.721815514054043}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.434460179097744}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.597263605396922}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Makkah"}, "mds2": {"value": 1.2469634830900291}, "mds3": {"value": 0.6609492109720396}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.58032178877369}}, "branch_attrs": {"mutations": {"nuc": ["G21334C"]}}}, {"name": "NODE_0000261", "node_attrs": {"div": 6, "num_date": {"value": 2020.2566977207025, "confidence": [2020.147468791248, 2020.3534580727403]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX594807", "node_attrs": {"div": 8, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_x": {"value": -3.1217549146661523}, "umap_x": {"value": 7.0352483}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2958806}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 32.39382357989254}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.496423566722477}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 6.957336486606619}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 1.177515654816543}, "mds3": {"value": 0.7918913384363875}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.925442518901628}}, "branch_attrs": {"mutations": {"nuc": ["A2630G", "A6565G"]}}}, {"name": "NODE_0000264", "node_attrs": {"div": 6, "num_date": {"value": 2020.325317701272, "confidence": [2020.1327397361085, 2020.3914711498433]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000751", "node_attrs": {"div": 12, "num_date": {"value": 2020.4790848699151, "confidence": [2020.435450367693, 2020.501349184111]}}, "branch_attrs": {"mutations": {"nuc": ["C1288T", "G1298A", "G25445T", "G28851T", "G29254T", "G29745A"]}}, "children": [{"name": "USA/GA-CDC-3784571-001/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5013661202186, "confidence": [2020.5013661202186, 2020.5013661202186]}, "tsne_x": {"value": -1.750219996721457}, "umap_x": {"value": 4.906672}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.158654}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.830993972198701}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.43498002558186}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.798460122656758}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 3.6308860835376295}, "mds3": {"value": 1.627423303833203}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.738255222112905}}, "branch_attrs": {"mutations": {"nuc": ["G24751T"], "S": ["L1063F"]}, "labels": {"aa": "S: L1063F"}}}, {"name": "USA/FL-QDX-2888/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_x": {"value": -1.72510303309936}, "umap_x": {"value": 4.996037}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1035764}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.337947306318697}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.432742678327628}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.396448850760176}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Florida"}, "mds2": {"value": 1.6077126863683184}, "mds3": {"value": 5.394428451882323}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.5707361294735829}}, "branch_attrs": {"mutations": {"nuc": ["G17334T", "C23533T"]}}}]}, {"name": "NODE_0000267", "node_attrs": {"div": 6, "num_date": {"value": 2020.360771547333, "confidence": [2020.1334913361968, 2020.4736855383]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/RSEC-00003C/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_x": {"value": -3.57132048552977}, "umap_x": {"value": 5.290073}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0378368}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.038742610592698}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.861822002597915}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.065914328591708}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": 3.652172898631101}, "mds3": {"value": 1.6987908632942057}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.1469608301350286}}, "branch_attrs": {"mutations": {"nuc": ["C10507T", "G15380T", "A17994G", "T22016C", "C22591T", "C29614T"], "S": ["W152R"]}, "labels": {"aa": "S: W152R"}}}, {"name": "NODE_0000270", "node_attrs": {"div": 6, "num_date": {"value": 2020.4105687644612, "confidence": [2020.2550045165628, 2020.540686539136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2008062713/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_x": {"value": -3.468444205431403}, "umap_x": {"value": 6.0476575}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7547283}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.8352636820343267}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.795736118353688}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.083176995548277}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 3.0046953774844423}, "mds3": {"value": 1.4957911947794156}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1989832563505077}}, "branch_attrs": {"mutations": {"nuc": ["C2455T", "C5392T", "A11246T", "A23949G", "C29013T"], "S": ["D796G"]}, "labels": {"aa": "S: D796G"}}}, {"name": "NODE_0000274", "node_attrs": {"div": 6, "num_date": {"value": 2020.479413830033, "confidence": [2020.2557544178178, 2020.6366776582736]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/Egy-SERVAC/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.6407103825136, "confidence": [2020.6407103825136, 2020.6407103825136]}, "tsne_x": {"value": -3.292824816968316}, "umap_x": {"value": 7.942246}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.62133455}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.177634697749391}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.283970517648335}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.743110422314481}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Egypt"}, "mds2": {"value": 0.8688106027054031}, "mds3": {"value": 0.3633725755379256}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.373980409525405}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000276", "node_attrs": {"div": 6, "num_date": {"value": 2020.4817977948915, "confidence": [2020.2639520378862, 2020.6441473457724]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MEX/CMX-151/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7062841530055, "confidence": [2020.7062841530055, 2020.7062841530055]}, "tsne_x": {"value": -3.792892473447103}, "umap_x": {"value": 4.459543}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3272922}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.445160392709053}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.063818086514765}, "country": {"value": "Mexico"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.418803996271835}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mexico"}, "mds2": {"value": -12.110419782380458}, "mds3": {"value": 3.4725830137953}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.669484633458813}}, "branch_attrs": {"mutations": {"nuc": ["G10255A", "C11095A", "A16534G", "G16975T", "G25218T", "A25574G", "T26066C", "T28157C", "G28457A", "A28959G"], "S": ["G1219V"]}, "labels": {"aa": "S: G1219V"}}}, {"name": "NODE_0000760", "node_attrs": {"div": 18, "num_date": {"value": 2020.918862313264, "confidence": [2020.8620604533478, 2020.938524590164]}}, "branch_attrs": {"mutations": {"nuc": ["C5833T", "C10207T", "T11525C", "T12811C", "C16375A", "G16741T", "C18501T", "A25864G", "T27299C", "T28229C", "C28977T", "T29233C"]}}, "children": [{"name": "NZL/20CV0670/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.938524590164, "confidence": [2020.938524590164, 2020.938524590164]}, "tsne_x": {"value": -4.123095564912809}, "umap_x": {"value": 3.5306}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.660112}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.009338040792935}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.798359873353625}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.23474169914695}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": 14.47803562453804}, "mds3": {"value": 0.8963922204687074}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1753696357557206}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20CV0669/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.938524590164, "confidence": [2020.938524590164, 2020.938524590164]}, "tsne_x": {"value": -4.124690871496015}, "umap_x": {"value": 3.5372624}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.676578}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.008934614137052}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.80485808898608}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.84157564782348}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": -10.258724580315189}, "mds3": {"value": 0.7544887820233005}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1760153905661346}}, "branch_attrs": {"mutations": {"nuc": ["G12338A"]}}}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000761", "node_attrs": {"div": 7, "num_date": {"value": 2020.0764469139513, "confidence": [2020.0533406647137, 2020.0980339015803]}}, "branch_attrs": {"mutations": {"nuc": ["C26735T"]}}, "children": [{"name": "SAU/518/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.110655737705, "confidence": [2020.110655737705, 2020.110655737705]}, "tsne_x": {"value": -2.78063588267874}, "umap_x": {"value": 6.1974144}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7519362}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.930381080767799}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.04981414781173}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.180615292166353}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Saudi Arabia"}, "mds2": {"value": 2.1268413463724145}, "mds3": {"value": 1.4524586648662607}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.97528956764791}}, "branch_attrs": {"mutations": {"nuc": ["A3790G", "C15342T", "G25543T"]}}}, {"name": "NODE_0000279", "node_attrs": {"div": 7, "num_date": {"value": 2020.156898452005, "confidence": [2020.075728098976, 2020.2199913427435]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000776", "node_attrs": {"div": 8, "num_date": {"value": 2020.2151906602912, "confidence": [2020.165022321676, 2020.3094059794512]}}, "branch_attrs": {"mutations": {"nuc": ["C3811T"]}}, "children": [{"name": "NGA/CV246/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.5150273224044, "confidence": [2020.5150273224044, 2020.5150273224044]}, "tsne_x": {"value": -3.309480024030208}, "umap_x": {"value": 4.355595}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.414836}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.902007770607549}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.462"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.354872131318817}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.216883162440045}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": 12.269102035073535}, "mds3": {"value": 3.678954054888939}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.820813574025152}}, "branch_attrs": {"mutations": {"nuc": ["C9223T", "G16206T", "C17004T", "T27824C", "G27916T", "T28251G", "C28253T", "G28881A", "G29554T"]}}}, {"name": "NGA/CV343/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_x": {"value": -2.832507324773288}, "umap_x": {"value": 6.326677}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6770787}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.324191308593209}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.462"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.036233153790857}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.925021662341598}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": 3.274873177203508}, "mds3": {"value": 2.677587987496194}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.15829678989472}}, "branch_attrs": {"mutations": {"nuc": ["G21255C", "T21983-", "T21984-", "G21985-", "G21986-", "G21987-", "T21988-", "G21989-", "T21990-", "T21991-", "T21992-", "A21993-", "T21994-", "T23659C"], "S": ["L141-", "G142-", "V143-", "Y144-"]}, "labels": {"aa": "S: L141-, G142-, V143-, Y144-"}}}]}, {"name": "NODE_0000281", "node_attrs": {"div": 7, "num_date": {"value": 2020.1811324759326, "confidence": [2020.1187701634094, 2020.2248430554455]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000284", "node_attrs": {"div": 7, "num_date": {"value": 2020.2007720857755, "confidence": [2020.1578882819551, 2020.2273599536654]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU999640", "node_attrs": {"div": 8, "num_date": {"value": 2020.2636612021859, "confidence": [2020.2636612021859, 2020.2636612021859]}, "tsne_x": {"value": -2.8585623463000145}, "umap_x": {"value": 6.990682}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3375624}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.934925740892853}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.042019040122366}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.32691266403756}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mecca"}, "mds2": {"value": 1.4305513927922455}, "mds3": {"value": 0.827029200070953}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.972167048502744}}, "branch_attrs": {"mutations": {"nuc": ["A23631T"], "S": ["Q690L"]}, "labels": {"aa": "S: Q690L"}}}, {"name": "NODE_0000285", "node_attrs": {"div": 7, "num_date": {"value": 2020.2153190474612, "confidence": [2020.173370643996, 2020.2295710064097]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000764", "node_attrs": {"div": 9, "num_date": {"value": 2020.2332118519232, "confidence": [2020.2147625321236, 2020.247423616277]}}, "branch_attrs": {"mutations": {"nuc": ["C16915T", "T24202C"]}}, "children": [{"name": "OV002578", "node_attrs": {"div": 10, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_x": {"value": -2.971712698421718}, "umap_x": {"value": 7.1831255}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1869452}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.933174481986463}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.471"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.59163997613788}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.919162364739399}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mecca"}, "mds2": {"value": 1.7869774708874702}, "mds3": {"value": 1.0291812402311538}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.976064053032285}}, "branch_attrs": {"mutations": {"nuc": ["T26735C"]}}}, {"name": "NODE_0000253", "node_attrs": {"div": 9, "num_date": {"value": 2020.2476527330073, "confidence": [2020.2291375866212, 2020.25]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0625/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.9139344262296, "confidence": [2020.9139344262296, 2020.9139344262296]}, "tsne_x": {"value": -2.2746563695400512}, "umap_x": {"value": 2.9330807}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5944319}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.023151363270681}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1.471"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.76750098830984}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.15347482127285}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Canterbury"}, "mds2": {"value": -14.329152973932189}, "mds3": {"value": 8.7287264300664}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1787434196246771}}, "branch_attrs": {"mutations": {"nuc": ["T4579A", "T7771C", "C8733T", "G12793A", "C14670T", "G14718A", "G20691A", "G21305A", "A23586G", "G25775T", "T26130C", "C28887T"], "S": ["Q675R"]}, "labels": {"aa": "S: Q675R"}}}, {"name": "OU996039", "node_attrs": {"div": 9, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_x": {"value": -2.7313756296715264}, "umap_x": {"value": 6.986756}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2783555}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.9324358698595105}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.471"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.000184281752098}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.028663147105974}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mecca"}, "mds2": {"value": 2.3211023806570807}, "mds3": {"value": 1.6034325659674142}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.977546783175832}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000287", "node_attrs": {"div": 7, "num_date": {"value": 2020.233111285201, "confidence": [2020.189579969735, 2020.2829010832113]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX835951", "node_attrs": {"div": 9, "num_date": {"value": 2020.3128415300546, "confidence": [2020.3128415300546, 2020.3128415300546]}, "tsne_x": {"value": -2.697563243460958}, "umap_x": {"value": 7.3595386}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.9771048}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 40.52387609200634}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.465"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.872334564068666}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 5.411147775278759}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 2.4557727145771024}, "mds3": {"value": 0.7705180257603687}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.991224949376122}}, "branch_attrs": {"mutations": {"nuc": ["C6120T", "G24197T"], "S": ["A879S"]}, "labels": {"aa": "S: A879S"}}}, {"name": "NODE_0000288", "node_attrs": {"div": 7, "num_date": {"value": 2020.3073770491803, "confidence": [2020.2491965261609, 2020.3073770491803]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU996078", "node_attrs": {"div": 7, "num_date": {"value": 2020.3073770491803, "confidence": [2020.3073770491803, 2020.3073770491803]}, "tsne_x": {"value": -2.913016950985792}, "umap_x": {"value": 7.31695}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0914524}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.932416553032357}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.981726725483146}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.407958414725854}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mecca"}, "mds2": {"value": 1.0233174183252634}, "mds3": {"value": 0.5666908144054166}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.97704567367404}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000289", "node_attrs": {"div": 7, "num_date": {"value": 2020.3208690665083, "confidence": [2020.2818869248624, 2020.3413600050592]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU994310", "node_attrs": {"div": 8, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_x": {"value": -2.8455214583414743}, "umap_x": {"value": 7.0030255}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3399695}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.932276974066131}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.064762151216577}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.359309536138156}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Madinah"}, "mds2": {"value": 0.9269428318921008}, "mds3": {"value": 0.9050048271538134}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.978158668466232}}, "branch_attrs": {"mutations": {"nuc": ["C8782T"]}}}, {"name": "NODE_0000290", "node_attrs": {"div": 7, "num_date": {"value": 2020.3376775162399, "confidence": [2020.289974931194, 2020.4766725724444]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV090862", "node_attrs": {"div": 8, "num_date": {"value": 2020.545081967213, "confidence": [2020.545081967213, 2020.545081967213]}, "tsne_x": {"value": -2.752031478333424}, "umap_x": {"value": 7.86456}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.6719855}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 10.222241026721305}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.24734846077207}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 3.193231657476771}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Riyadh"}, "mds2": {"value": -0.9246823637445724}, "mds3": {"value": 0.919523910449704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -22.57688780290038}}, "branch_attrs": {"mutations": {"nuc": ["C17010T"]}}}, {"name": "NODE_0000291", "node_attrs": {"div": 7, "num_date": {"value": 2020.360117888465, "confidence": [2020.2900265645947, 2020.4776208010285]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV091509", "node_attrs": {"div": 16, "num_date": {"value": 2020.610655737705, "confidence": [2020.610655737705, 2020.610655737705]}, "tsne_x": {"value": -3.4202008960284225}, "umap_x": {"value": 4.450753}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3938704}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.851423335339296}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.312279028474855}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.690847061210327}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Riyadh"}, "mds2": {"value": 9.668946593306057}, "mds3": {"value": 6.0702430565464205}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.94359839801819}}, "branch_attrs": {"mutations": {"nuc": ["T1592C", "G8179T", "C14708T", "C17850T", "C21575T", "C26110T", "C28253T", "A29687G", "C29739T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0000292", "node_attrs": {"div": 7, "num_date": {"value": 2020.380048140331, "confidence": [2020.2907818720605, 2020.486560422672]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV090860", "node_attrs": {"div": 9, "num_date": {"value": 2020.545081967213, "confidence": [2020.545081967213, 2020.545081967213]}, "tsne_x": {"value": -2.7916802610329587}, "umap_x": {"value": 7.032455}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2382138}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.934190802609329}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.13218364388388}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.842742198880825}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Riyadh"}, "mds2": {"value": 0.360574981011407}, "mds3": {"value": 1.762035818987582}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.981239191204565}}, "branch_attrs": {"mutations": {"nuc": ["C1403T", "G23403A"], "S": ["G614D"]}, "labels": {"aa": "S: G614D"}}}, {"name": "NODE_0000770", "node_attrs": {"div": 22, "num_date": {"value": 2020.6998717489223, "confidence": [2020.618121234344, 2020.7773430702005]}}, "branch_attrs": {"mutations": {"nuc": ["C4543T", "G5629T", "G9526T", "C11497T", "G13993T", "G15766T", "A16889G", "G17019T", "G22992A", "C25710T", "T26876C", "G28975C", "G29399A", "A29866C", "A29869T"], "S": ["S477N"]}, "labels": {"aa": "S: S477N"}}, "children": [{"name": "TUN/TUN-202055439/2020", "node_attrs": {"div": 29, "num_date": {"value": 2020.8374316939892, "confidence": [2020.8374316939892, 2020.8374316939892]}, "tsne_x": {"value": -3.151277345381785}, "umap_x": {"value": 1.8844111}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9653658}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.882795497089451}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -19.98915216345637}, "country": {"value": "Tunisia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.879272686377465}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tunisia"}, "mds2": {"value": -23.83862575511249}, "mds3": {"value": 7.084284569257336}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -19.65375936970412}}, "branch_attrs": {"mutations": {"nuc": ["C9866A", "C16394T", "G17523T", "G24368T", "G28141T", "C29077T", "C29635T"], "S": ["D936Y"]}, "labels": {"aa": "S: D936Y"}}}, {"name": "NODE_0000294", "node_attrs": {"div": 22, "num_date": {"value": 2020.7136601182724, "confidence": [2020.6334366731028, 2020.786593013019]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "FRA/IHUCOVID-015758-Nova1M/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.801912568306, "confidence": [2020.801912568306, 2020.801912568306]}, "tsne_x": {"value": -3.146517751358996}, "umap_x": {"value": 2.445076}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4272408}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.843204388064593}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -19.963896000711912}, "country": {"value": "France"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.000355485419195}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "France"}, "mds2": {"value": -17.026937054241365}, "mds3": {"value": 3.881899490113323}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.956709238513351}}, "branch_attrs": {"mutations": {"nuc": ["C5365T", "G25489T"]}}}, {"name": "NODE_0000295", "node_attrs": {"div": 22, "num_date": {"value": 2020.744386430855, "confidence": [2020.6345050098764, 2020.7987275283724]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV916768", "node_attrs": {"div": 24, "num_date": {"value": 2020.8620218579235, "confidence": [2020.8620218579235, 2020.8620218579235]}, "tsne_x": {"value": -3.146225922330791}, "umap_x": {"value": 2.4182673}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3860352}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.695479738670781}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -19.96212885749247}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.390656148050763}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Germany"}, "mds2": {"value": -16.636356303172082}, "mds3": {"value": 3.314471933886729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.532142345072589}}, "branch_attrs": {"mutations": {"nuc": ["C6555T", "C28512T"]}}}, {"name": "NZL/20CV0613/2020", "node_attrs": {"div": 28, "num_date": {"value": 2020.9030054644809, "confidence": [2020.9030054644809, 2020.9030054644809]}, "tsne_x": {"value": -3.146274831426413}, "umap_x": {"value": 1.9063015}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.985262}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.187297868079926}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -19.971996283946226}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 26.02127008307816}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": 21.31154254293162}, "mds3": {"value": 6.369332183601969}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 0.2606715587930905}}, "branch_attrs": {"mutations": {"nuc": ["C11095T", "G15664T", "C17502T", "C17747T", "C27434T", "G29757T"]}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000778", "node_attrs": {"div": 9, "num_date": {"value": 2020.216957969515, "confidence": [2020.1880695566135, 2020.297652605822]}}, "branch_attrs": {"mutations": {"nuc": ["C22444T", "C28854T"]}}, "children": [{"name": "NODE_0000784", "node_attrs": {"div": 10, "num_date": {"value": 2020.2629279297723, "confidence": [2020.2277256484979, 2020.3620218579235]}}, "branch_attrs": {"mutations": {"nuc": ["T18877C"]}}, "children": [{"name": "OV087928", "node_attrs": {"div": 14, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -2.969806902307065}, "umap_x": {"value": 5.651627}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8750294}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.916723264482411}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.10262596912773}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.68554152206698}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Madinah"}, "mds2": {"value": 4.837013028151485}, "mds3": {"value": 2.7917007203187043}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.984921583397966}}, "branch_attrs": {"mutations": {"nuc": ["C4777T", "G5668T", "C11339T", "C16338T"]}}}, {"name": "NODE_0000298", "node_attrs": {"div": 10, "num_date": {"value": 2020.3607846263221, "confidence": [2020.2732204911197, 2020.4121234768484]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV089988", "node_attrs": {"div": 10, "num_date": {"value": 2020.4959016393443, "confidence": [2020.4959016393443, 2020.4959016393443]}, "tsne_x": {"value": -2.6010998365161964}, "umap_x": {"value": 7.118482}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2305961}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.917420868488362}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.804951633248802}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.749999276061574}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mecca"}, "mds2": {"value": 1.388122328585284}, "mds3": {"value": 1.0522573506476205}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.98506317671572}}, "branch_attrs": {"mutations": {}}}, {"name": "OV087920", "node_attrs": {"div": 13, "num_date": {"value": 2020.4439890710382, "confidence": [2020.4439890710382, 2020.4439890710382]}, "tsne_x": {"value": -2.5598013680071534}, "umap_x": {"value": 6.1716733}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8795989}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.92028949093847}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.26623691022812}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.482733697520365}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Madinah"}, "mds2": {"value": -1.1681521743097727}, "mds3": {"value": 2.510196348904304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.993488748228124}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "C10789T", "G23403A"], "S": ["G614D"]}, "labels": {"aa": "S: G614D"}}}]}]}, {"name": "NODE_0000300", "node_attrs": {"div": 9, "num_date": {"value": 2020.2249819712538, "confidence": [2020.2011888477423, 2020.3034067336755]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000301", "node_attrs": {"div": 9, "num_date": {"value": 2020.2409379580715, "confidence": [2020.205641070903, 2020.3082636815002]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000782", "node_attrs": {"div": 11, "num_date": {"value": 2020.3598781007665, "confidence": [2020.3081417039525, 2020.4699922561424]}}, "branch_attrs": {"mutations": {"nuc": ["C9924T", "C10582T"]}}, "children": [{"name": "OV090780", "node_attrs": {"div": 15, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_x": {"value": -2.5906678247240347}, "umap_x": {"value": 4.7216887}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2845647}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.829663103621904}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.38082292872141}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.979296622768958}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Makkah"}, "mds2": {"value": -3.4101590246129545}, "mds3": {"value": 1.257939694547186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.204561466182543}}, "branch_attrs": {"mutations": {"nuc": ["T1692C", "T3037C", "A8636G", "A26127G"]}}}, {"name": "OU998679", "node_attrs": {"div": 13, "num_date": {"value": 2020.6434426229507, "confidence": [2020.6434426229507, 2020.6434426229507]}, "tsne_x": {"value": -2.635744278951988}, "umap_x": {"value": 7.0356603}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.211286}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.631396732994474}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.09093628404211}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.7185711983558234}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Madinah"}, "mds2": {"value": -2.9623333820338456}, "mds3": {"value": 1.3046035251063854}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.187294661879243}}, "branch_attrs": {"mutations": {"nuc": ["T18877C", "A20822G"]}}}]}, {"name": "NODE_0000799", "node_attrs": {"div": 10, "num_date": {"value": 2020.258238473712, "confidence": [2020.2178448507816, 2020.3129267223994]}}, "branch_attrs": {"mutations": {"nuc": ["C2836T"]}}, "children": [{"name": "NODE_0000277", "node_attrs": {"div": 10, "num_date": {"value": 2020.2657699590268, "confidence": [2020.2203982492074, 2020.3192555211476]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC71/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.3210382513662, "confidence": [2020.3210382513662, 2020.3210382513662]}, "tsne_x": {"value": -2.2098776748056235}, "umap_x": {"value": 4.778057}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2803135}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.2400795237520255}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.01515498378105}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.110188559955397}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Gujarat"}, "mds2": {"value": 3.0596074633441352}, "mds3": {"value": 2.5604000823349526}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.5803660429829454}}, "branch_attrs": {"mutations": {"nuc": ["G15444T", "G20433T", "C27527T", "G28077T"]}}}, {"name": "IND/ILS03/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.3674863387978, "confidence": [2020.3674863387978, 2020.3674863387978]}, "tsne_x": {"value": -2.243025509363976}, "umap_x": {"value": 4.7698064}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2700737}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.624324000553559}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.984946477043167}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.352873543562977}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "India"}, "mds2": {"value": 2.2354143502919617}, "mds3": {"value": 2.591431616547639}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.584837169821044}}, "branch_attrs": {"mutations": {"nuc": ["A68T", "A5647G", "C10074T", "T21703G"]}}}]}, {"name": "NODE_0000305", "node_attrs": {"div": 10, "num_date": {"value": 2020.2714641365067, "confidence": [2020.219285760102, 2020.3296018585015]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC107/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.353825136612, "confidence": [2020.353825136612, 2020.353825136612]}, "tsne_x": {"value": -2.2258947226947225}, "umap_x": {"value": 4.9096055}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.177633}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.261874452753348}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.967058020754198}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.886516288570894}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Gujarat"}, "mds2": {"value": 4.542098188410994}, "mds3": {"value": 3.12157276393309}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.567467557426172}}, "branch_attrs": {"mutations": {"nuc": ["G5062A", "G20991C", "G29315T", "G29734T"]}}}, {"name": "IND/GBRC492b/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.905737704918, "confidence": [2020.905737704918, 2020.905737704918]}, "tsne_x": {"value": -1.9954162753647304}, "umap_x": {"value": 4.4332833}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4231038}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.446318111761728}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.869648400348034}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.070109111862386}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "India"}, "mds2": {"value": -2.254243729891104}, "mds3": {"value": 5.8885221238599135}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.654279795792464}}, "branch_attrs": {"mutations": {"nuc": ["T10980C", "T14408C", "T14562C", "A21958C", "G23593T", "G24368A"], "S": ["E132D", "Q677H", "D936N"]}, "labels": {"aa": "S: E132D, Q677H, D936N"}}}]}]}]}, {"name": "NODE_0000307", "node_attrs": {"div": 9, "num_date": {"value": 2020.3209366233282, "confidence": [2020.1673453126523, 2020.3502025139262]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000803", "node_attrs": {"div": 10, "num_date": {"value": 2020.3581753826886, "confidence": [2020.2779202293043, 2020.3852885080537]}}, "branch_attrs": {"mutations": {"nuc": ["T1947C"]}}, "children": [{"name": "AUS/VIC1822/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.405737704918, "confidence": [2020.405737704918, 2020.405737704918]}, "tsne_x": {"value": -2.484816508584169}, "umap_x": {"value": 5.3298965}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0081117}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.761844336529516}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.04652645908489}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.9607926802569}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 4.97767835236024}, "mds3": {"value": 3.0878236746851195}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 7.994616232633694}}, "branch_attrs": {"mutations": {"nuc": ["C9195A", "C13989T", "C21658T"]}}}, {"name": "NODE_0000309", "node_attrs": {"div": 10, "num_date": {"value": 2020.376670396886, "confidence": [2020.2843020547598, 2020.4910248795463]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BTN/RCDC0006-SV200562/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6215846994535, "confidence": [2020.6215846994535, 2020.6215846994535]}, "tsne_x": {"value": -3.001485520781951}, "umap_x": {"value": 3.765736}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6266713}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.8643820500955455}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.21171256854158}, "country": {"value": "Bhutan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.893434942359356}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bhutan"}, "mds2": {"value": 3.035066752866665}, "mds3": {"value": 9.0092023427812}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.153894651243639}}, "branch_attrs": {"mutations": {"nuc": ["G3947T", "C7869T", "G8027T", "G13410A", "A13712G", "G17721T", "C18744T", "C27213T"]}}}, {"name": "NODE_0000310", "node_attrs": {"div": 10, "num_date": {"value": 2020.4829006105542, "confidence": [2020.1742981267043, 2020.6921871888271]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0521/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8401639344263, "confidence": [2020.8401639344263, 2020.8401639344263]}, "tsne_x": {"value": -3.0724161595290584}, "umap_x": {"value": 3.3436522}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6114647}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.41027734817356}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.196826898411537}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.999277948901835}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": 12.931289048458146}, "mds3": {"value": 6.576239609023933}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 16.172592080032324}}, "branch_attrs": {"mutations": {"nuc": ["G1661T", "T2482C", "C6310T", "C12501T", "C12546T", "A13938G", "A23476G", "C24912T", "G28655T"], "S": ["T1117I"]}, "labels": {"aa": "S: T1117I"}}}, {"name": "NODE_0000312", "node_attrs": {"div": 10, "num_date": {"value": 2020.5855911980111, "confidence": [2020.1436824191212, 2020.7985562773874]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000313", "node_attrs": {"div": 10, "num_date": {"value": 2020.6400722048436, "confidence": [2020.1487953246367, 2020.807658883252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-63/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.031506849315, "confidence": [2021.031506849315, 2021.031506849315]}, "tsne_x": {"value": -2.860336892381405}, "umap_x": {"value": 2.3929527}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.348663}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.230216495423695}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.611674256734965}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.32538826996942}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Lebanon"}, "mds2": {"value": 17.218399688805988}, "mds3": {"value": 5.585795975636703}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.7161161516473102}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "G4180T", "A4851G", "G7936T", "T15747C", "C16092T", "G18756T", "G19999T", "C20555T", "C21614T", "G25855T", "G26062T", "G29254T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}, {"name": "NZL/21MV0134/2021", "node_attrs": {"div": 15, "num_date": {"value": 2021.1794520547944, "confidence": [2021.1794520547944, 2021.1794520547944]}, "tsne_x": {"value": -2.2930133287274286}, "umap_x": {"value": 5.5625014}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.877689}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 54.868389349096304}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.07678728820849}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": 1.2950738200834917}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Zealand"}, "mds2": {"value": -9.945453566079784}, "mds3": {"value": 1.051329343494344}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 6.538765386489417}}, "branch_attrs": {"mutations": {"nuc": ["C335T", "G11222T", "G12274A", "G23587C", "T25556G"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}]}, {"name": "NODE_0000808", "node_attrs": {"div": 18, "num_date": {"value": 2020.974043715847, "confidence": [2020.9000824876955, 2020.974043715847]}}, "branch_attrs": {"mutations": {"nuc": ["G922A", "G3431T", "T5653C", "G5950A", "C6255T", "C7504T", "T24175C", "C26060T"]}}, "children": [{"name": "HongKong/HKPU-00089/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.974043715847, "confidence": [2020.974043715847, 2020.974043715847]}, "tsne_x": {"value": -1.246665845222438}, "umap_x": {"value": 3.5204318}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.623039}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.992882274567225}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.952035876196494}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.26239185188719}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Hong Kong"}, "mds2": {"value": 7.701428624264236}, "mds3": {"value": 3.800183347924428}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1848613361690695}}, "branch_attrs": {"mutations": {}}}, {"name": "HongKong/HKPU-00155/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.2890410958903, "confidence": [2021.2890410958903, 2021.2890410958903]}, "tsne_x": {"value": -1.1334631634618986}, "umap_x": {"value": 1.9343168}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9996941}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.993842876850578}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.97328590341309}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.41923804843691}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -18.2022005908586}, "mds3": {"value": 10.607884900509983}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.1847142151785036}}, "branch_attrs": {"mutations": {"nuc": ["C5812T", "C13176T", "C15720T", "G18180A", "T20993C", "G24821T", "C26509T", "C29555T"], "S": ["A1087S"]}, "labels": {"aa": "S: A1087S"}}}]}]}]}]}]}, {"name": "NODE_0000315", "node_attrs": {"div": 9, "num_date": {"value": 2020.3619205940931, "confidence": [2020.2812207890238, 2020.4646701561742]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV090027", "node_attrs": {"div": 12, "num_date": {"value": 2020.4877049180327, "confidence": [2020.4877049180327, 2020.4877049180327]}, "tsne_x": {"value": -2.6847989735654667}, "umap_x": {"value": 6.228042}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8002934}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.925071713829865}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.006023621021427}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.385974078210603}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Madinah"}, "mds2": {"value": 3.461404972628465}, "mds3": {"value": 0.8831642356003493}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.96687770289506}}, "branch_attrs": {"mutations": {"nuc": ["A16339G", "C25553T", "T25563G"]}}}, {"name": "NODE_0000319", "node_attrs": {"div": 9, "num_date": {"value": 2020.4186842694508, "confidence": [2020.3098347068692, 2020.4632457288048]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV091549", "node_attrs": {"div": 11, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_x": {"value": -2.4375085827841807}, "umap_x": {"value": 6.4629917}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6264333}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.915587895386676}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.92981145124012}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.727394751067011}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Madinah"}, "mds2": {"value": 4.092651349262995}, "mds3": {"value": 2.208040840100761}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.98345773199295}}, "branch_attrs": {"mutations": {"nuc": ["G23401T", "G28727T"], "S": ["Q613H"]}, "labels": {"aa": "S: Q613H"}}}, {"name": "NODE_0000321", "node_attrs": {"div": 9, "num_date": {"value": 2020.4831301002191, "confidence": [2020.3160642029209, 2020.634472319937]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000322", "node_attrs": {"div": 9, "num_date": {"value": 2020.528485784383, "confidence": [2020.3181347575064, 2020.632679289413]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV005977", "node_attrs": {"div": 12, "num_date": {"value": 2020.6434426229507, "confidence": [2020.6434426229507, 2020.6434426229507]}, "tsne_x": {"value": -2.4264884856315603}, "umap_x": {"value": 6.0568867}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7414373}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.917678386225138}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.063102311169065}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.25706225669022}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Madinah"}, "mds2": {"value": -0.1424421540469277}, "mds3": {"value": 3.832249358081041}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.98471882010287}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "T16993C", "C28054T"]}}}, {"name": "NODE_0000323", "node_attrs": {"div": 9, "num_date": {"value": 2020.54488509876, "confidence": [2020.3217634241432, 2020.6421416527878]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX726681", "node_attrs": {"div": 13, "num_date": {"value": 2020.717213114754, "confidence": [2020.717213114754, 2020.717213114754]}, "tsne_x": {"value": -2.429204131705983}, "umap_x": {"value": 5.499897}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9524398}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.76541859219987}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.994975972809943}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.289825578404397}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 6.392735217036513}, "mds3": {"value": 3.006360507613732}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.78111666344592}}, "branch_attrs": {"mutations": {"nuc": ["C7528T", "C15981T", "C25626T", "C29555T"]}}}, {"name": "NODE_0000325", "node_attrs": {"div": 9, "num_date": {"value": 2020.5717562047312, "confidence": [2020.32185036049, 2020.654124829378]}}, "branch_attrs": {"mutations": {"nuc": ["A22190-", "T22191-", "T22192-"], "S": ["I210-"]}, "labels": {"aa": "S: I210-"}}, "children": [{"name": "NZL/20CV0527/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.853825136612, "confidence": [2020.853825136612, 2020.853825136612]}, "tsne_x": {"value": -1.9193998555674183}, "umap_x": {"value": 3.011328}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5519135}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.678802902447608}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.405920131062267}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.352973217333247}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Wellington"}, "mds2": {"value": -10.057402341493544}, "mds3": {"value": 3.2141908349354944}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.56813154112031}}, "branch_attrs": {"mutations": {"nuc": ["C2445T", "C8802T", "C15240T", "C17004T", "G17259T", "G19419T", "A19667G", "C20283T", "C20404T", "T29173G", "G29751T"]}}}, {"name": "NODE_0000326", "node_attrs": {"div": 9, "num_date": {"value": 2020.6079118472953, "confidence": [2020.320338517184, 2020.6881033112952]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0629/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.9193989071039, "confidence": [2020.9193989071039, 2020.9193989071039]}, "tsne_x": {"value": -2.3085111972476327}, "umap_x": {"value": 5.0523157}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1480772}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 60.34406002904221}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.361727387161977}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 10.128627130708049}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": 4.1320657630207664}, "mds3": {"value": 7.482539297190545}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.980288468502569}}, "branch_attrs": {"mutations": {"nuc": ["C4320T", "A11211G", "G18826T", "G19648T", "A26676T", "C28310T"]}}}, {"name": "CHN/933/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0506849315068, "confidence": [2021.0506849315068, 2021.0506849315068]}, "tsne_x": {"value": -1.9596600527808263}, "umap_x": {"value": 2.56574}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4833279}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.507078175368418}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -17.50164487456257}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.943804479232625}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -15.44493503776287}, "mds3": {"value": 12.051229270205466}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.8149612311803531}}, "branch_attrs": {"mutations": {"nuc": ["C4276T", "C5339T", "C5812T", "C6027T", "C10039T", "C10456T", "C19572T", "C20844T", "-22190A", "-22191T", "-22192T", "T22882G", "G23587T", "G25785T", "C26625T", "A27386-", "A27387-", "A27388-", "C27389-", "G27390-", "A27391-", "A27392-", "C27393-", "A27394-", "T27395-", "G27396-", "A27397-", "A27398-", "A27399-", "A27400-", "T27401-", "T27402-", "A27403-", "T27404-", "T27405-", "C27406-", "T27407-", "T27408-", "T27409-", "T27410-", "C27411-", "T27412-", "T27413-", "G27414-", "G27415-", "C27416-", "A27417-", "C27418-", "T27419-", "G27420-", "A27421-", "T27422-", "A27423-", "A27424-", "C27425-", "A27426-", "C27427-", "T27428-", "C27429-", "G27430-", "C27431-", "T27432-", "A27433-", "C27434-", "T27435-", "T27436-", "G27437-", "T27438-", "G27439-", "A27440-", "G27441-", "C27442-", "T27443-", "T27444-", "T27445-", "A27446-", "T27447-", "C27448-", "A27449-", "C27450-", "T27451-", "A27452-", "C27453-", "C27454-", "A27455-", "A27456-", "G27457-", "A27458-", "G27459-", "T27460-", "G27461-", "T27462-", "G27463-", "T27464-", "T27465-", "A27466-", "G27467-", "A27468-", "G27469-", "G27470-", "T27471-", "A27472-", "C27473-", "A27474-", "A27475-", "C27476-", "A27477-", "G27478-", "T27479-", "A27480-", "C27481-", "T27482-", "T27483-", "T27484-", "T27485-", "A27486-", "A27487-", "A27488-", "A27489-", "G27490-", "A27491-", "A27492-", "C27493-", "C27494-", "T27495-", "T27496-", "G27497-", "C27498-", "T27499-", "C27500-", "T27501-", "T27502-", "C27503-", "T27504-", "G27505-", "G27506-", "A27507-", "A27508-", "C27509-", "A27510-", "T27511-", "A27512-", "C27513-", "G27514-", "A27515-", "G27516-", "G27517-", "G27518-", "C27519-", "A27520-", "A27521-", "T27522-", "T27523-", "C27524-", "A27525-", "C27526-", "C27527-", "A27528-", "T27529-", "T27530-", "T27531-", "C27532-", "A27533-", "T27534-", "C27535-", "C27536-", "T27537-", "C27538-", "T27539-", "A27540-", "G27541-", "C27542-", "T27543-", "G27544-", "A27545-", "T27546-", "A27547-", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "A27624-", "C27625-", "G27626-", "T27627-", "G27628-", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "C27641-", "A27642-", "C27643-", "C27644-", "T27645-", "A27646-", "A27647-", "A27648-", "C27649-", "T27650-", "G27651-", "T27652-", "T27653-", "C27654-", "A27655-", "T27656-", "C27657-", "A27658-", "G27659-", "A27660-", "C27661-", "A27662-", "A27663-", "G27664-", "A27665-", "G27666-", "G27667-", "A27668-", "A27669-", "G27670-", "T27671-", "T27672-", "C27673-", "A27674-", "A27675-", "G27676-", "A27677-", "A27678-", "C27679-", "T27680-", "T27681-", "T27682-", "A27683-", "C27684-", "T27685-", "C27686-", "T27687-", "C27688-", "C27689-", "A27690-", "A27691-", "T27692-", "T27693-", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-", "T27704-", "T27705-", "G27706-", "C27707-", "G27708-", "G27709-", "C27710-", "A27711-", "A27712-", "T27713-", "A27714-", "G27715-", "T27716-", "G27717-", "T27718-", "T27719-", "T27720-", "A27721-", "T27722-", "A27723-", "A27724-", "C27725-", "A27726-", "C27727-", "T27728-", "T27729-", "T27730-", "G27731-", "C27732-", "T27733-", "T27734-", "C27735-", "A27736-", "C27737-", "A27738-", "C27739-", "T27740-", "C27741-", "A27742-", "A27743-", "A27744-", "A27745-", "G27746-", "A27747-", "A27748-", "A27749-", "G27750-", "A27751-", "C27752-", "A27753-", "G27754-", "A27755-", "G28690T"], "S": ["-210I", "N440K", "Q675H"]}, "labels": {"aa": "S: -210I, N440K, Q675H"}}}]}]}]}]}, {"name": "NODE_0000787", "node_attrs": {"div": 10, "num_date": {"value": 2020.6052391951112, "confidence": [2020.4451907396117, 2020.7141985726619]}}, "branch_attrs": {"mutations": {"nuc": ["G25494T"]}}, "children": [{"name": "BGD/NGRI-R2-1/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7363387978141, "confidence": [2020.7363387978141, 2020.7363387978141]}, "tsne_x": {"value": -2.221884497367803}, "umap_x": {"value": 5.3324056}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9872456}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.598296485152584}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.203569619479847}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.74065502411299}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 6.435694077408921}, "mds3": {"value": 0.1740226031780548}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.530383983846341}}, "branch_attrs": {"mutations": {"nuc": ["C7979A", "C10138T", "G11719A"]}}}, {"name": "NODE_0000788", "node_attrs": {"div": 12, "num_date": {"value": 2020.7580392152745, "confidence": [2020.621313685727, 2020.8703526715606]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "G18756T"]}}, "children": [{"name": "MYS/NCOV27755/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.9084699453551, "confidence": [2020.9084699453551, 2020.9084699453551]}, "tsne_x": {"value": -1.7155082615387152}, "umap_x": {"value": 4.929359}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1701674}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 35.71775241030172}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -18.79203603201945}, "country": {"value": "Malaysia"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 14.202348722656794}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Malaysia"}, "mds2": {"value": 0.149617277179934}, "mds3": {"value": 4.130929492447296}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.1116013048059166}}, "branch_attrs": {"mutations": {"nuc": ["C9559T", "A28615G"]}}}, {"name": "NODE_0000789", "node_attrs": {"div": 15, "num_date": {"value": 2020.8809974513947, "confidence": [2020.7953750057259, 2020.9658469945355]}}, "branch_attrs": {"mutations": {"nuc": ["C6317T", "C17999T", "C22938T"], "S": ["S459F"]}, "labels": {"aa": "S: S459F"}}, "children": [{"name": "THA/CONI-0336/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.9658469945355, "confidence": [2020.9658469945355, 2020.9658469945355]}, "tsne_x": {"value": -1.349313961822039}, "umap_x": {"value": 4.7269807}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2820928}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.688374708363252}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -19.16138243421028}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.2196482707064}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Samut Sakhon"}, "mds2": {"value": -0.6306454123685079}, "mds3": {"value": 4.671259114909401}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.324194838110675}}, "branch_attrs": {"mutations": {"nuc": ["G22104T"], "S": ["G181V"]}, "labels": {"aa": "S: G181V"}}}, {"name": "NODE_0000330", "node_attrs": {"div": 15, "num_date": {"value": 2020.9164397995728, "confidence": [2020.794899802587, 2020.9606180659782]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000333", "node_attrs": {"div": 15, "num_date": {"value": 2020.9410965284717, "confidence": [2020.7963984127107, 2020.9751400992934]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/CONI-0446/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_x": {"value": -1.3302887798477292}, "umap_x": {"value": 4.599535}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4039574}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.137902698309259}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -19.1795748044872}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.136166547760824}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bangkok"}, "mds2": {"value": 0.3170543743915299}, "mds3": {"value": 8.143121312557335}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.49111459532186}}, "branch_attrs": {"mutations": {"nuc": ["C7600T", "C29509T"]}}}, {"name": "THA/CONI-0580/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_x": {"value": -1.2432479438880524}, "umap_x": {"value": 3.7910914}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6504338}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.071975753514496}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -19.2770095729334}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.447774816476226}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bangkok"}, "mds2": {"value": 16.09839175460314}, "mds3": {"value": 1.2547649499814832}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.456660254303769}}, "branch_attrs": {"mutations": {"nuc": ["G3259T", "A3942T", "G7091T", "C12974T", "T19653C", "C27752T", "G28001T"]}}}]}, {"name": "NODE_0000792", "node_attrs": {"div": 16, "num_date": {"value": 2020.9520495220927, "confidence": [2020.9004374530225, 2021.0022745825843]}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}, "children": [{"name": "NODE_0000793", "node_attrs": {"div": 17, "num_date": {"value": 2020.992746524467, "confidence": [2020.9634008398496, 2021.009589041096]}}, "branch_attrs": {"mutations": {"nuc": ["C11074T"]}}, "children": [{"name": "THA/CONI-0411/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_x": {"value": -1.3224505497151031}, "umap_x": {"value": 3.976221}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5982425}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.37924760564977}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -19.191745114251148}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.03837410682012}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bangkok"}, "mds2": {"value": -0.5929366035515153}, "mds3": {"value": 3.972518902565411}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.987093494497498}}, "branch_attrs": {"mutations": {}}}, {"name": "THA/CONI-0412/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_x": {"value": -1.3086677725549878}, "umap_x": {"value": 3.8186774}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.613721}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.4263830532619926}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -19.205684167119177}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.376952362035805}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bangkok"}, "mds2": {"value": -1.103277915234588}, "mds3": {"value": 4.521833066571998}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.9959985824070685}}, "branch_attrs": {"mutations": {"nuc": ["C5090T"]}}}]}, {"name": "NODE_0000794", "node_attrs": {"div": 17, "num_date": {"value": 2021.0659279025222, "confidence": [2020.9839520407525, 2021.1062447221668]}}, "branch_attrs": {"mutations": {"nuc": ["C17745T"]}}, "children": [{"name": "THA/CONI-0550/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.127397260274, "confidence": [2021.127397260274, 2021.127397260274]}, "tsne_x": {"value": -1.3079915499282595}, "umap_x": {"value": 3.8023689}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5875235}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.919743791183267}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -19.207305232090743}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.08951304068348}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Pathum Thani"}, "mds2": {"value": -2.6355151154207777}, "mds3": {"value": 4.609122136811818}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.915918130923459}}, "branch_attrs": {"mutations": {"nuc": ["C20032T"]}}}, {"name": "THA/CONI-0503/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.1082191780822, "confidence": [2021.1082191780822, 2021.1082191780822]}, "tsne_x": {"value": -1.307074146874862}, "umap_x": {"value": 3.749768}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6564043}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.302101381701084}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "tsne_y": {"value": -19.206834027455223}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.06742837087839}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Pathum Thani"}, "mds2": {"value": -2.382415730988772}, "mds3": {"value": 4.689113607383514}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.06272580640339}}, "branch_attrs": {"mutations": {"nuc": ["C29171T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000817", "node_attrs": {"div": 6, "num_date": {"value": 2019.9550093268263, "confidence": [2019.937190992027, 2019.9550093268263]}}, "branch_attrs": {"mutations": {"nuc": ["C1059T"]}}, "children": [{"name": "NODE_0000968", "node_attrs": {"div": 7, "num_date": {"value": 2019.959937444129, "confidence": [2019.9535352145556, 2019.9714754774348]}}, "branch_attrs": {"mutations": {"nuc": ["G25907T"]}}, "children": [{"name": "NODE_0000340", "node_attrs": {"div": 9, "num_date": {"value": 2020.4822404371585, "confidence": [2020.3950941682797, 2020.4822404371585]}}, "branch_attrs": {"mutations": {"nuc": ["G26062T", "G28857A"]}}, "children": [{"name": "KEN/K17310/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_x": {"value": -4.44019987150402}, "umap_x": {"value": 8.164138}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.48516953}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.16413001725907}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.596"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.94307243678016}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.454734605445984}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 1.3550625984450633}, "mds3": {"value": -1.5870493808541462}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.413460172456521}}, "branch_attrs": {"mutations": {"nuc": ["A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-"]}}}, {"name": "NODE_0000970", "node_attrs": {"div": 9, "num_date": {"value": 2020.4840295925217, "confidence": [2020.4249522832404, 2020.6335261097458]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C54633/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.6844262295083, "confidence": [2020.6844262295083, 2020.6844262295083]}, "tsne_x": {"value": -3.931453823483381}, "umap_x": {"value": 4.885713}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2423759}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.2352786934299784}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.596.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.844800709736957}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.213873253613531}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 4.943067925922076}, "mds3": {"value": 4.234346291287837}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.3916656892705494}}, "branch_attrs": {"mutations": {"nuc": ["C4012T", "C6701T", "C16859T", "T18784C", "G22225T"]}}}, {"name": "NODE_0000342", "node_attrs": {"div": 9, "num_date": {"value": 2020.573269716601, "confidence": [2020.419989154346, 2020.6770579997583]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C67558/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -3.688920640895972}, "umap_x": {"value": 6.0092707}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7451715}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.660647528125465}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.596.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.917747075290162}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.964191361643362}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 2.0709471596084343}, "mds3": {"value": 3.3696831335845}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.837215329895433}}, "branch_attrs": {"mutations": {"nuc": ["A270T", "G6446T", "T27384C"]}}}, {"name": "KEN/K96885/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.9439890710382, "confidence": [2020.9439890710382, 2020.9439890710382]}, "tsne_x": {"value": -4.236345607830687}, "umap_x": {"value": 3.3150024}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.601632}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.99773031563329}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.596.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.801944968293936}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.581301330787067}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 11.23238025389711}, "mds3": {"value": 4.9327241863951565}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1694029904658238}}, "branch_attrs": {"mutations": {"nuc": ["C823T", "C1060T", "C1567T", "A4457G", "C5512T", "C8772T", "G13201T", "G18525T", "G20940T", "A26927G"]}}}]}]}]}, {"name": "NODE_0000972", "node_attrs": {"div": 13, "num_date": {"value": 2019.9837807962354, "confidence": [2019.972161029702, 2019.9914472535372]}}, "branch_attrs": {"mutations": {"nuc": ["C10319T", "A18424G", "C21304T", "C27964T", "C28472T", "C28869T"]}}, "children": [{"name": "NODE_0000992", "node_attrs": {"div": 15, "num_date": {"value": 2019.9933868815644, "confidence": [2019.9817952221674, 2019.9992937309448]}}, "branch_attrs": {"mutations": {"nuc": ["G8083A", "C14805T"]}}, "children": [{"name": "NODE_0001004", "node_attrs": {"div": 16, "num_date": {"value": 2019.9995733414885, "confidence": [2019.988813543831, 2020.0077951502053]}}, "branch_attrs": {"mutations": {"nuc": ["G29402T"]}}, "children": [{"name": "USA/MT-UMGC-02796/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.00956284153, "confidence": [2020.00956284153, 2020.00956284153]}, "tsne_x": {"value": 0.5176127629329611}, "umap_x": {"value": 3.7797232}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.529498}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.359536983400892}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.85033927163714}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.109423507421702}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Montana"}, "mds2": {"value": 9.775245564091676}, "mds3": {"value": 10.41445276750622}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.944656560972964}}, "branch_attrs": {"mutations": {"nuc": ["G669A", "T1075C", "C3177T", "C29870A"]}}}, {"name": "NODE_0000348", "node_attrs": {"div": 16, "num_date": {"value": 2020.5885020087364, "confidence": [2020.2537102775864, 2020.7594615867692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-MDHHS-SC22217/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_x": {"value": 0.6254122822178886}, "umap_x": {"value": 3.7538989}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.5306196}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 50.61668957532441}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.87838175764553}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": 15.238977197371636}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Michigan"}, "mds2": {"value": 8.704720670874513}, "mds3": {"value": 12.835086509491113}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 6.707449634688568}}, "branch_attrs": {"mutations": {"nuc": ["T2734C", "C5869T", "C15763T", "G16068T", "C25731T"]}}}, {"name": "NODE_0001005", "node_attrs": {"div": 18, "num_date": {"value": 2020.9489573679077, "confidence": [2020.8804076306226, 2020.9494535519125]}}, "branch_attrs": {"mutations": {"nuc": ["G8653T", "A25397C"]}}, "children": [{"name": "NZL/20CV0675/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9658469945355, "confidence": [2020.9658469945355, 2020.9658469945355]}, "tsne_x": {"value": 0.4714950597054463}, "umap_x": {"value": 3.9276118}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.5023549}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.975789544390703}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.860550195800329}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.70078446932298}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Canterbury"}, "mds2": {"value": 8.011400564737341}, "mds3": {"value": 9.882964598906034}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1531674051027752}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20CV0658/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9494535519125, "confidence": [2020.9494535519125, 2020.9494535519125]}, "tsne_x": {"value": 0.4715251435176482}, "umap_x": {"value": 3.8826606}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.4674897}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.976449734652428}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.86046562975206}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.537318878094398}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Canterbury"}, "mds2": {"value": 8.004299454861519}, "mds3": {"value": 9.91181595856575}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1533833509739447}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000350", "node_attrs": {"div": 15, "num_date": {"value": 2020.5364360060573, "confidence": [2020.432297139067, 2020.6498871855797]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000994", "node_attrs": {"div": 16, "num_date": {"value": 2020.6401510783237, "confidence": [2020.5163904390809, 2020.764588562305]}}, "branch_attrs": {"mutations": {"nuc": ["C22079A"], "S": ["Q173K"]}, "labels": {"aa": "S: Q173K"}}, "children": [{"name": "USA/MT-UMGC-01490/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.801912568306, "confidence": [2020.801912568306, 2020.801912568306]}, "tsne_x": {"value": 0.5270152805367212}, "umap_x": {"value": 4.0694275}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.4916713}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.5966745221889695}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.879608243706924}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.49382213772287}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Montana"}, "mds2": {"value": 7.5774463490530755}, "mds3": {"value": 6.953082743160279}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.906967330105097}}, "branch_attrs": {"mutations": {"nuc": ["C15157A", "G15168A", "T21304C"]}}}, {"name": "NODE_0000995", "node_attrs": {"div": 17, "num_date": {"value": 2020.7043749247423, "confidence": [2020.5896632700544, 2020.828569915288]}}, "branch_attrs": {"mutations": {"nuc": ["C29364T"]}}, "children": [{"name": "USA/MN-MDH-4237/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.154794520548, "confidence": [2021.154794520548, 2021.154794520548]}, "tsne_x": {"value": 0.7854489914179442}, "umap_x": {"value": 2.2278304}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.1334586}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.987320277425302}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.849673432614711}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.74062236082302}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Minnesota"}, "mds2": {"value": 12.316216157802565}, "mds3": {"value": 10.461173703916437}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1690846176577634}}, "branch_attrs": {"mutations": {"nuc": ["T2318C", "G8353T", "C21727T", "G24087T", "T25496C", "T28889C"], "S": ["G842V"]}, "labels": {"aa": "S: G842V"}}}, {"name": "USA/CO-CDPHE-2011168570/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.8756830601094, "confidence": [2020.8756830601094, 2020.8756830601094]}, "tsne_x": {"value": 0.6962856710750547}, "umap_x": {"value": 2.3842208}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.2245762}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.862881002268773}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.845036005355734}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.24040387717877}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "USA"}, "mds2": {"value": 11.358536554864385}, "mds3": {"value": 9.969625522473066}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.042239010093071}}, "branch_attrs": {"mutations": {"nuc": ["C5628T", "C7011T", "G9479T", "G22918T", "C29095T"]}}}]}]}, {"name": "NODE_0000353", "node_attrs": {"div": 15, "num_date": {"value": 2020.586729795307, "confidence": [2020.4727728917107, 2020.645449221068]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG974203/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6543715846994, "confidence": [2020.6543715846994, 2020.6543715846994]}, "tsne_x": {"value": 0.4584722172123031}, "umap_x": {"value": 4.0276036}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.4861584}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 26.731952688364963}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.85733024246888}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 14.23043097380654}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Arizona"}, "mds2": {"value": 8.721068098558995}, "mds3": {"value": 9.679978663328871}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.960489531302929}}, "branch_attrs": {"mutations": {"nuc": ["G13201T", "A14236G", "C19269T"]}}}, {"name": "NODE_0000354", "node_attrs": {"div": 15, "num_date": {"value": 2020.6406524865724, "confidence": [2020.49600147998, 2020.7108309973762]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001001", "node_attrs": {"div": 17, "num_date": {"value": 2020.7694280601963, "confidence": [2020.6128954394667, 2020.8927781501977]}}, "branch_attrs": {"mutations": {"nuc": ["T7348A", "C18131T"]}}, "children": [{"name": "USA/CA-CDC-QDX22164611/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_x": {"value": 0.8688317598208162}, "umap_x": {"value": 2.2753332}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.189998}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.988997506475289}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.848618578578936}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.652904379989053}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "California"}, "mds2": {"value": -3.2088349414358106}, "mds3": {"value": 15.842463249439616}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.1717435209632674}}, "branch_attrs": {"mutations": {"nuc": ["G2867T", "C10594T", "G11083T", "C13119T", "C13665T", "C18115T", "A19667G"]}}}, {"name": "NODE_0001002", "node_attrs": {"div": 18, "num_date": {"value": 2020.8452428327848, "confidence": [2020.699930009387, 2020.9147149791302]}}, "branch_attrs": {"mutations": {"nuc": ["G23593T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}, "children": [{"name": "USA/JGCS/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.9248633879781, "confidence": [2020.9248633879781, 2020.9248633879781]}, "tsne_x": {"value": 0.618201829787204}, "umap_x": {"value": 3.185348}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.4728866}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.982739850453855}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.854007378141503}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.544162704352782}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Alabama"}, "mds2": {"value": 11.418001054851183}, "mds3": {"value": 7.363247864172973}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1542676819407257}}, "branch_attrs": {"mutations": {"nuc": ["C16084T", "C21767T"], "S": ["H69Y"]}, "labels": {"aa": "S: H69Y"}}}, {"name": "USA/FL-BPHL-0214/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_x": {"value": 0.7326209781846724}, "umap_x": {"value": 2.3863091}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.2592466}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 42.63037365996539}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.853317387050602}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 22.27857035385165}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Florida"}, "mds2": {"value": 12.362243833444769}, "mds3": {"value": 9.977595684027037}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.654443142284474}}, "branch_attrs": {"mutations": {"nuc": ["C2790T", "C4320T", "A22130G", "C29095T"], "S": ["R190G"]}, "labels": {"aa": "S: R190G"}}}]}]}, {"name": "NODE_0000357", "node_attrs": {"div": 15, "num_date": {"value": 2020.706036061003, "confidence": [2020.5867787221705, 2020.714480874317]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WI-UW-2019/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_x": {"value": 0.360297646974944}, "umap_x": {"value": 4.7921486}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.206632}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.629581084885112}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.873378030796124}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.9362919448863}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Wisconsin"}, "mds2": {"value": 5.448834202773963}, "mds3": {"value": 4.150311865262471}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.367146649754336}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000360", "node_attrs": {"div": 15, "num_date": {"value": 2020.713070040797, "confidence": [2020.5926017183897, 2020.7608668477478]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2011020174/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8346994535518, "confidence": [2020.8346994535518, 2020.8346994535518]}, "tsne_x": {"value": 0.5042272547603222}, "umap_x": {"value": 3.361985}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.548746}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.130262932734202}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.859888173801975}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.49107697402104}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "USA"}, "mds2": {"value": 8.920408811738463}, "mds3": {"value": 7.7874618142306655}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.7134231932858597}}, "branch_attrs": {"mutations": {"nuc": ["A1547G", "G19872T", "C28528T", "G29543T"]}}}, {"name": "NODE_0000361", "node_attrs": {"div": 15, "num_date": {"value": 2020.735698887169, "confidence": [2020.5965611886024, 2020.8516562471013]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/KY-CDC-LC0003154/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.0232876712328, "confidence": [2021.0232876712328, 2021.0232876712328]}, "tsne_x": {"value": 0.897839790801854}, "umap_x": {"value": 2.2787545}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.169122}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.016059991694966}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.939863332257517}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.533193620477537}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Kentucky"}, "mds2": {"value": 11.869941248540387}, "mds3": {"value": 10.74310354580762}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.664099508037832}}, "branch_attrs": {"mutations": {"nuc": ["G2720A", "C15026T", "C20380T", "C21302T", "T21304A", "G21305A", "T21939C", "C25549T", "G27074T"], "S": ["V126A"]}, "labels": {"aa": "S: V126A"}}}, {"name": "NODE_0000362", "node_attrs": {"div": 15, "num_date": {"value": 2020.7816071649568, "confidence": [2020.6045923795623, 2020.8674863387978]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG768046/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8674863387978, "confidence": [2020.8674863387978, 2020.8674863387978]}, "tsne_x": {"value": 0.3527569610134566}, "umap_x": {"value": 4.9090357}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.1315765}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 38.87256405470279}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.86924933393428}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 12.043746423176293}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Arizona"}, "mds2": {"value": 5.685735120768667}, "mds3": {"value": 7.734072504048914}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.767007872787191}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/MD-CDC-2-3859287/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_x": {"value": 0.6962215451896241}, "umap_x": {"value": 2.3948538}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.2638624}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.627505329644445}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.862251127626894}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.017563394600444}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Maryland"}, "mds2": {"value": 13.064645671476264}, "mds3": {"value": 9.660757129592042}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.60032814389065}}, "branch_attrs": {"mutations": {"nuc": ["C3738T", "C12513T", "G14773A", "C15763T", "C16308T", "G17027A", "C17678T"]}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000364", "node_attrs": {"div": 13, "num_date": {"value": 2020.4793747626734, "confidence": [2020.2802512819896, 2020.5930022766038]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000979", "node_attrs": {"div": 14, "num_date": {"value": 2020.5747788137662, "confidence": [2020.3572526465207, 2020.761557687705]}}, "branch_attrs": {"mutations": {"nuc": ["C11572T"]}}, "children": [{"name": "USA/MN-CDC-QDX22085954/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_x": {"value": 0.0322412365554573}, "umap_x": {"value": 2.3223405}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.234606}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.002612218355348}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -12.345532491138147}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.56645043515389}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Minnesota"}, "mds2": {"value": 14.69182901494316}, "mds3": {"value": 8.621544112182352}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.163303584703592}}, "branch_attrs": {"mutations": {"nuc": ["T2698C", "C2937T", "G3606T", "T5143C", "C6401T", "A11351G", "C12242T", "A14199G", "A15471G"]}}}, {"name": "USA/PA-CDC-STM-000020561/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.1383561643836, "confidence": [2021.1383561643836, 2021.1383561643836]}, "tsne_x": {"value": 0.2742557181927042}, "umap_x": {"value": 1.9844431}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -1.9986173}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.771479799243247}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -12.67797917282252}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.461208285700728}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Pennsylvania"}, "mds2": {"value": 16.047199179153555}, "mds3": {"value": 11.553542373074375}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.87796006555085}}, "branch_attrs": {"mutations": {"nuc": ["C2062T", "C12484T", "G13897T", "A16011G", "C18060T", "G20962T", "C21614T", "G23611T", "G24757T", "A26041T", "C28310T", "G28460A", "C29733T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}]}, {"name": "NODE_0000366", "node_attrs": {"div": 13, "num_date": {"value": 2020.4815908186463, "confidence": [2020.3155149130678, 2020.598022291985]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000978", "node_attrs": {"div": 14, "num_date": {"value": 2020.6073252006183, "confidence": [2020.4356824901754, 2020.7737782978975]}}, "branch_attrs": {"mutations": {"nuc": ["G9928T"]}}, "children": [{"name": "USA/NH-CDC-QDX21643727/2021", "node_attrs": {"div": 19, "num_date": {"value": 2021.0863013698631, "confidence": [2021.0863013698631, 2021.0863013698631]}, "tsne_x": {"value": 0.1501420309787418}, "umap_x": {"value": 3.2252316}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.5326228}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.989524538005265}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.913945081138044}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.076892537379884}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "New Hampshire"}, "mds2": {"value": 9.346691728011386}, "mds3": {"value": 7.47902789274108}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1635087861891983}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "C5497T", "C12973T", "T22282C", "G29422T"]}}}, {"name": "USA/MI-MDHHS-SC22783/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8510928961748, "confidence": [2020.8510928961748, 2020.8510928961748]}, "tsne_x": {"value": 0.0416203066085128}, "umap_x": {"value": 3.556507}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.5826244}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.560362936548669}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -12.052054883735837}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.990759249693035}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Michigan"}, "mds2": {"value": 8.797421746074498}, "mds3": {"value": 8.192069158113123}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.856315491020996}}, "branch_attrs": {"mutations": {"nuc": ["A2806C", "T4165C", "G11083T", "C18570T", "G20714T", "A28169G"]}}}]}, {"name": "NODE_0000370", "node_attrs": {"div": 13, "num_date": {"value": 2020.5085142936086, "confidence": [2020.3215342548947, 2020.6050298723262]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000976", "node_attrs": {"div": 16, "num_date": {"value": 2020.7020893577435, "confidence": [2020.4789825396517, 2020.8713756600175]}}, "branch_attrs": {"mutations": {"nuc": ["G8264T", "C23533T", "C26060T"]}}, "children": [{"name": "USA/MI-CDC-ASC210044914/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.2561643835616, "confidence": [2021.2561643835616, 2021.2561643835616]}, "tsne_x": {"value": -0.2752838776556458}, "umap_x": {"value": 1.9790697}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -1.9866241}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.261750520340946}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -12.261571748490912}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.302504448275933}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Michigan"}, "mds2": {"value": -11.373373993817552}, "mds3": {"value": 13.818465925162643}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -17.60559106069146}}, "branch_attrs": {"mutations": {"nuc": ["G621A", "G1738C", "A3051G", "A13852G", "C15237T", "G18255T", "C20132T", "C27849T", "C28948T", "G29254T"]}}}, {"name": "USA/IN-CDC-LC0024095/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1493150684933, "confidence": [2021.1493150684933, 2021.1493150684933]}, "tsne_x": {"value": -0.4041830347855407}, "umap_x": {"value": 1.9816885}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.0390956}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.022732428585387}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -12.14438874799555}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.688589297687624}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Indiana"}, "mds2": {"value": -21.441064448459446}, "mds3": {"value": 6.416739645021384}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 15.014287214477092}}, "branch_attrs": {"mutations": {"nuc": ["C527T", "C539T", "C842A", "A1139C", "T1936C", "C7303T", "C13426T", "T19389G", "A19667G", "A22924G", "C24919T", "T28334C"]}}}]}, {"name": "NODE_0000373", "node_attrs": {"div": 13, "num_date": {"value": 2020.531082084777, "confidence": [2020.3231413426195, 2020.6106558696104]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000374", "node_attrs": {"div": 13, "num_date": {"value": 2020.5439427639076, "confidence": [2020.3261946896992, 2020.6328630355667]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NMDOH-2020323670/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6680327868853, "confidence": [2020.6680327868853, 2020.6680327868853]}, "tsne_x": {"value": 0.1902322532815712}, "umap_x": {"value": 3.4229274}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.5525713}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.693123587891701}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.88009040485529}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.89797186827201}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "New Mexico"}, "mds2": {"value": 8.161095218792116}, "mds3": {"value": 6.7234046998244645}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.994406796616714}}, "branch_attrs": {"mutations": {"nuc": ["C9131T", "C15928T", "G23868C", "G27214A", "G27841T"], "S": ["G769A"]}, "labels": {"aa": "S: G769A"}}}, {"name": "NODE_0000380", "node_attrs": {"div": 13, "num_date": {"value": 2020.5870111817226, "confidence": [2020.3221988866112, 2020.6860066643524]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/IL-UW-1950/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7472677595629, "confidence": [2020.7472677595629, 2020.7472677595629]}, "tsne_x": {"value": 0.1649480134715742}, "umap_x": {"value": 4.1994114}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.4037063}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.990931480592885}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.89277683984916}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.228734316430366}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Illinois"}, "mds2": {"value": 6.43495164023839}, "mds3": {"value": 5.564459448096829}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1622492730668513}}, "branch_attrs": {"mutations": {"nuc": ["A4044C", "C4321T", "C17746T", "G29554T"]}}}, {"name": "NODE_0000381", "node_attrs": {"div": 13, "num_date": {"value": 2020.6126274866572, "confidence": [2020.323835813853, 2020.7086422719744]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-HHD-579985/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_x": {"value": 0.0384249784334164}, "umap_x": {"value": 3.427479}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.5703259}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.934620345895754}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.968765394196817}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.989502050137148}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Texas"}, "mds2": {"value": 11.449760985921577}, "mds3": {"value": 8.198290860069873}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.855315297891387}}, "branch_attrs": {"mutations": {"nuc": ["C5079T", "C8980T", "C19881T", "A23667C", "C23874T", "G29747T", "C29769T"], "S": ["E702A", "A771V"]}, "labels": {"aa": "S: E702A, A771V"}}}, {"name": "USA/AZ-CDC-QDX22318521/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.1383561643836, "confidence": [2021.1383561643836, 2021.1383561643836]}, "tsne_x": {"value": 0.5635847820858993}, "umap_x": {"value": 2.0684254}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.0771828}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.9719262700841895}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -12.637575292120292}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 27.34987611149113}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Arizona"}, "mds2": {"value": -13.5565941925425}, "mds3": {"value": 11.632066050262315}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.113958455816638}}, "branch_attrs": {"mutations": {"nuc": ["C176T", "C2842T", "C3634T", "C4202T", "C6723T", "C7401T", "G14829T", "T15338C", "G17280T", "C21621T", "A23064C", "C28093T", "G29690T"], "S": ["T20I", "N501T"]}, "labels": {"aa": "S: T20I, N501T"}}}]}]}]}, {"name": "NODE_0000983", "node_attrs": {"div": 15, "num_date": {"value": 2020.574818289771, "confidence": [2020.420811420449, 2020.6161202185792]}}, "branch_attrs": {"mutations": {"nuc": ["T1927C", "A22255T"]}}, "children": [{"name": "USA/UT-UPHL-2012395205/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6161202185792, "confidence": [2020.6161202185792, 2020.6161202185792]}, "tsne_x": {"value": 0.0807384110997997}, "umap_x": {"value": 4.2873497}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.3656547}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 28.39644830448504}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.600518328990203}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 15.107961924334818}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "USA"}, "mds2": {"value": 7.161858334131227}, "mds3": {"value": 6.2126405132605855}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.830942016330207}}, "branch_attrs": {"mutations": {"nuc": ["C1387T"]}}}, {"name": "NODE_0000383", "node_attrs": {"div": 15, "num_date": {"value": 2020.5876170048186, "confidence": [2020.4209205013337, 2020.6800193339648]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000384", "node_attrs": {"div": 15, "num_date": {"value": 2020.6148362711422, "confidence": [2020.4194817250568, 2020.7125120650778]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/hCoV_19_USA_ID_IVREF_687293_2020/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.9193989071039, "confidence": [2020.9193989071039, 2020.9193989071039]}, "tsne_x": {"value": -0.1759220967199146}, "umap_x": {"value": 2.2614205}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.171948}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.159462565858453}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.330293695407976}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.68723752151005}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Idaho"}, "mds2": {"value": 14.826048753499364}, "mds3": {"value": 10.49301080667554}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.616974946835898}}, "branch_attrs": {"mutations": {"nuc": ["G174A", "G370T", "A6013T", "T7666C", "C11322T", "C11328T", "G14118T", "C26060T", "C27732T"]}}}, {"name": "NODE_0000385", "node_attrs": {"div": 15, "num_date": {"value": 2020.647708607745, "confidence": [2020.418625436191, 2020.7415386310513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-UPHL-2105777162/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.9521857923498, "confidence": [2020.9521857923498, 2020.9521857923498]}, "tsne_x": {"value": -0.0298195228833044}, "umap_x": {"value": 2.296904}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.201934}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.169630720584946}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.288371049336767}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.30527405823818}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "USA"}, "mds2": {"value": 14.106274085489746}, "mds3": {"value": 9.297518223944722}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.359076447639607}}, "branch_attrs": {"mutations": {"nuc": ["C218T", "T6478C", "C9223T", "G12067T", "C12854A", "C13326T", "G16935T", "C25528T"]}}}, {"name": "USA/CO-CDPHE-2100209339/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0287671232877, "confidence": [2021.0287671232877, 2021.0287671232877]}, "tsne_x": {"value": -0.0398420077985917}, "umap_x": {"value": 2.364046}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.2438295}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 42.66399445021874}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.365735290628349}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 23.97029505008908}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "USA"}, "mds2": {"value": 11.913653046612431}, "mds3": {"value": 8.870696625919603}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.557445691583374}}, "branch_attrs": {"mutations": {"nuc": ["C5622T", "T12427A", "C18483T", "C26527A", "G26529C", "G29179T", "C29311T"]}}}]}]}, {"name": "NODE_0000386", "node_attrs": {"div": 15, "num_date": {"value": 2020.6057383821199, "confidence": [2020.420460582702, 2020.6821888459094]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000387", "node_attrs": {"div": 15, "num_date": {"value": 2020.61537010917, "confidence": [2020.4214621413578, 2020.6872341251658]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-UPHL-2012561708/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.7581967213114, "confidence": [2020.7581967213114, 2020.7581967213114]}, "tsne_x": {"value": -0.0681185226208616}, "umap_x": {"value": 2.3065915}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.1992643}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 23.10167030834026}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.307976462127828}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 23.310590761576453}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "USA"}, "mds2": {"value": 15.0380539623047}, "mds3": {"value": 9.295300986990084}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.7319083321531559}}, "branch_attrs": {"mutations": {"nuc": ["G185T", "G1729A", "T3455A", "C11103T", "A14836G", "C18828T", "G25565A", "G25726T"]}}}, {"name": "USA/MT-UMGC-02477/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.8811475409836, "confidence": [2020.8811475409836, 2020.8811475409836]}, "tsne_x": {"value": -0.0428088700982205}, "umap_x": {"value": 2.2616785}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.1779575}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.6671383310562575}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -11.283623928591236}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.782062134310213}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Montana"}, "mds2": {"value": 13.714524724520544}, "mds3": {"value": 9.23885153929326}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.91343627309816}}, "branch_attrs": {"mutations": {"nuc": ["G3231T", "G3259A", "G3281T", "G9968A", "C17172T", "G22225T", "C23481T", "G28395A", "C29870A"], "S": ["S640F"]}, "labels": {"aa": "S: S640F"}}}]}, {"name": "NODE_0000985", "node_attrs": {"div": 19, "num_date": {"value": 2020.7840418665355, "confidence": [2020.6337845834698, 2020.8670125397337]}}, "branch_attrs": {"mutations": {"nuc": ["G15766T", "G18538T", "T25930C", "A29439T"]}}, "children": [{"name": "USA/CO-CDPHE-2100251517/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0561643835617, "confidence": [2021.0561643835617, 2021.0561643835617]}, "tsne_x": {"value": -0.1332900937302108}, "umap_x": {"value": 2.308389}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.2085702}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 23.81379238906032}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -10.941278637488288}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 24.38648871055521}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "USA"}, "mds2": {"value": 13.8007939497919}, "mds3": {"value": 9.966675138354098}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.13044222261826}}, "branch_attrs": {"mutations": {"nuc": ["G3062A", "T14217C", "G22021T", "C25611T"], "S": ["M153I"]}, "labels": {"aa": "S: M153I"}}}, {"name": "NODE_0000986", "node_attrs": {"div": 21, "num_date": {"value": 2020.8617669796643, "confidence": [2020.7712688016322, 2020.8997077798354]}}, "branch_attrs": {"mutations": {"nuc": ["C6196T", "G23120T"], "S": ["A520S"]}, "labels": {"aa": "S: A520S"}}, "children": [{"name": "NZL/20CV0615/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.9030054644809, "confidence": [2020.9030054644809, 2020.9030054644809]}, "tsne_x": {"value": -0.1449578296656615}, "umap_x": {"value": 2.3464327}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.21012}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.519446587759954}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -10.921504213618691}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.132502072675937}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Auckland"}, "mds2": {"value": 12.477675948892813}, "mds3": {"value": 11.660264359806224}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0960481561029965}}, "branch_attrs": {"mutations": {"nuc": ["C5988T", "C17569T"]}}}, {"name": "NODE_0000987", "node_attrs": {"div": 23, "num_date": {"value": 2021.017808219178, "confidence": [2020.9684933054255, 2021.017808219178]}}, "branch_attrs": {"mutations": {"nuc": ["G3227A", "G26951T"]}}, "children": [{"name": "NZL/21CV0093/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0369863013698, "confidence": [2021.0369863013698, 2021.0369863013698]}, "tsne_x": {"value": -0.1455954576778768}, "umap_x": {"value": 2.263214}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.1688313}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.945152286273027}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -10.913868520650666}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.386526809257347}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Canterbury"}, "mds2": {"value": 13.04877798179245}, "mds3": {"value": 9.857301598359484}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1459409982968996}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0048/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.017808219178, "confidence": [2021.017808219178, 2021.017808219178]}, "tsne_x": {"value": -0.1467515560590904}, "umap_x": {"value": 2.3594189}, "Nextstrain_clade": {"value": "20G"}, "umap_y": {"value": -2.2377317}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.94539962362175}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "tsne_y": {"value": -10.91298662193302}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.369771548284653}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "division": {"value": "Canterbury"}, "mds2": {"value": 14.770831299195024}, "mds3": {"value": 9.768139817100488}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.146419227406338}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000343", "node_attrs": {"div": 6, "num_date": {"value": 2020.0323796727344, "confidence": [2019.9966492575436, 2020.1573948103483]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000829", "node_attrs": {"div": 7, "num_date": {"value": 2020.076434047401, "confidence": [2020.026317684407, 2020.222066148482]}}, "branch_attrs": {"mutations": {"nuc": ["T1666C"]}}, "children": [{"name": "TUN/COV1482/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_x": {"value": -4.628359232416598}, "umap_x": {"value": 5.0128098}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.120676}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.342443207894668}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -13.79482885248806}, "country": {"value": "Tunisia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.266024989089493}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tunisia"}, "mds2": {"value": 1.719989261800572}, "mds3": {"value": 2.041339775907929}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.872577248370013}}, "branch_attrs": {"mutations": {"nuc": ["T17C", "G28346T", "G28347T", "T29811C", "A29813G", "T29817G", "T29822C", "A29824C"]}}}, {"name": "NGA/CV257/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2718579234972, "confidence": [2020.2718579234972, 2020.2718579234972]}, "tsne_x": {"value": -2.8647597690354925}, "umap_x": {"value": 6.961843}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2667965}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.6573965298688575}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.775525518024835}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.004349306392316}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": 2.1979352304161988}, "mds3": {"value": 1.752251094703185}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.21449349146244}}, "branch_attrs": {"mutations": {"nuc": ["A2285G", "A6371C"]}}}]}, {"name": "NODE_0000391", "node_attrs": {"div": 6, "num_date": {"value": 2020.0733026126827, "confidence": [2019.9604599311576, 2020.1643798987002]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000945", "node_attrs": {"div": 7, "num_date": {"value": 2020.1970597882769, "confidence": [2019.953334779522, 2020.2782832266503]}}, "branch_attrs": {"mutations": {"nuc": ["G29779T"]}}, "children": [{"name": "FRA/IHUCOVID-001403/2020", "node_attrs": {"div": 26, "num_date": {"value": 2020.6079234972678, "confidence": [2020.6079234972678, 2020.6079234972678]}, "tsne_x": {"value": -3.972484429274283}, "umap_x": {"value": 2.064461}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1469643}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.308356520048825}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.367"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.344093742726772}, "country": {"value": "France"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.975732252375217}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "France"}, "mds2": {"value": 20.69223414867464}, "mds3": {"value": 11.768982856211162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 16.463472050972857}}, "branch_attrs": {"mutations": {"nuc": ["C3099T", "G4960T", "C4965T", "C6070T", "C7303T", "C7564T", "C9246T", "C10279T", "C10301A", "C10525T", "C10582T", "G10688T", "G11851T", "C14230A", "G25526T", "G27632T", "C27804T", "C28830A", "G29402T"]}}}, {"name": "NODE_0000946", "node_attrs": {"div": 14, "num_date": {"value": 2020.6265163413414, "confidence": [2020.567319615054, 2020.646174863388]}}, "branch_attrs": {"mutations": {"nuc": ["A3057G", "C8281T", "C11916T", "C15352T", "C16650T", "A20675T", "G29179T"]}}, "children": [{"name": "KOR/KD-Cov-N9/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.646174863388, "confidence": [2020.646174863388, 2020.646174863388]}, "tsne_x": {"value": -3.232397096895525}, "umap_x": {"value": 4.885007}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1928496}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.012608322234115}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.497"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -12.52521148523667}, "country": {"value": "South Korea"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.000156206413758}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Korea"}, "mds2": {"value": 4.344489152881474}, "mds3": {"value": 2.6915763748361896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0659412319329501}}, "branch_attrs": {"mutations": {}}}, {"name": "KOR/KD-Cov-N12/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6543715846994, "confidence": [2020.6543715846994, 2020.6543715846994]}, "tsne_x": {"value": -3.237957082560352}, "umap_x": {"value": 4.774353}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2347076}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.012481262446788}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.497"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -12.510267482807109}, "country": {"value": "South Korea"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.902424466505932}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Korea"}, "mds2": {"value": 7.840613830648268}, "mds3": {"value": 3.908048120710282}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0655018455523167}}, "branch_attrs": {"mutations": {"nuc": ["G3164T"]}}}]}]}, {"name": "NODE_0000394", "node_attrs": {"div": 6, "num_date": {"value": 2020.1070180617955, "confidence": [2020.0523874866874, 2020.1682661029427]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000395", "node_attrs": {"div": 6, "num_date": {"value": 2020.1569728463999, "confidence": [2020.1047122440193, 2020.2082026403589]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000856", "node_attrs": {"div": 7, "num_date": {"value": 2020.1954786104388, "confidence": [2020.154488888449, 2020.2098459322733]}}, "branch_attrs": {"mutations": {"nuc": ["C17639T"]}}, "children": [{"name": "USA/UT-00033/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.214480874317, "confidence": [2020.214480874317, 2020.214480874317]}, "tsne_x": {"value": -2.582893047947883}, "umap_x": {"value": 6.777073}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3999498}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.904903824760613}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.64179626586068}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.44047304101825}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Utah"}, "mds2": {"value": 1.5546398569075697}, "mds3": {"value": 1.404567276116228}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.9824253087711}}, "branch_attrs": {"mutations": {"nuc": ["C6445T", "G22335T"], "S": ["W258L"]}, "labels": {"aa": "S: W258L"}}}, {"name": "NODE_0000397", "node_attrs": {"div": 7, "num_date": {"value": 2020.2159145131748, "confidence": [2020.1844561503053, 2020.3013334319685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-DSHS-4647/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.594262295082, "confidence": [2020.594262295082, 2020.594262295082]}, "tsne_x": {"value": -1.852086637601163}, "umap_x": {"value": 4.8023176}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2302158}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.063654915322871}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.403513792423423}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.427113287866414}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Texas"}, "mds2": {"value": 1.2062340761009294}, "mds3": {"value": 2.616054386208992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.749862076107805}}, "branch_attrs": {"mutations": {"nuc": ["C335T", "T5290C", "C15017T", "T16425G", "T23962C", "C26455T", "T27529C"]}}}, {"name": "USA/WA-S1266/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_x": {"value": -2.361841362693308}, "umap_x": {"value": 6.601528}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5438565}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.3465467847675585}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.624724962421022}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.600477171972792}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Washington"}, "mds2": {"value": 2.6746758569795435}, "mds3": {"value": 2.2839292853719297}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.586030630239172}}, "branch_attrs": {"mutations": {"nuc": ["T4441C", "G6125A", "A12557C"]}}}]}]}, {"name": "NODE_0000398", "node_attrs": {"div": 6, "num_date": {"value": 2020.2143341680191, "confidence": [2020.1463355120745, 2020.3826460078149]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000399", "node_attrs": {"div": 6, "num_date": {"value": 2020.2454761663964, "confidence": [2020.159500401883, 2020.3858079997108]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000863", "node_attrs": {"div": 7, "num_date": {"value": 2020.3229133784266, "confidence": [2020.1670985331623, 2020.394522654217]}}, "branch_attrs": {"mutations": {"nuc": ["G1738T"]}}, "children": [{"name": "USA/CO-CDPHE-2007212754/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5505464480875, "confidence": [2020.5505464480875, 2020.5505464480875]}, "tsne_x": {"value": -2.174487336702722}, "umap_x": {"value": 5.0020204}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.117519}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.9016455857762966}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -13.804097771494646}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.640380410990907}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 2.5647126093161474}, "mds3": {"value": 2.567630855117651}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.1725735181523225}}, "branch_attrs": {"mutations": {"nuc": ["C17850T", "G25963T", "A25966C", "G28221T", "G28655T", "C28893G"]}}}, {"name": "USA/CO-CDPHE-2006201291/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4631147540983, "confidence": [2020.4631147540983, 2020.4631147540983]}, "tsne_x": {"value": -1.8234280699796488}, "umap_x": {"value": 5.3237815}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9697777}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 50.4563256096387}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.028440999997745}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 11.2984103122522}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 4.728949088295882}, "mds3": {"value": 4.162251549135125}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.793399102072343}}, "branch_attrs": {"mutations": {"nuc": ["G991T", "G8131T", "C8334T", "A19005G", "G24257T", "C25702T"], "S": ["A899S"]}, "labels": {"aa": "S: A899S"}}}]}, {"name": "NODE_0000827", "node_attrs": {"div": 7, "num_date": {"value": 2020.3218631910736, "confidence": [2020.1822179350966, 2020.3992993418494]}}, "branch_attrs": {"mutations": {"nuc": ["C9430T"]}}, "children": [{"name": "USA/MA-CDC-STM-000029294/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.1739726027397, "confidence": [2021.1739726027397, 2021.1739726027397]}, "tsne_x": {"value": -1.631906341973024}, "umap_x": {"value": 3.6402388}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6409128}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.81945893184982}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.517"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.951835402815396}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.597922495662367}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 6.017093401890024}, "mds3": {"value": 3.011662181648972}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.670343332367096}}, "branch_attrs": {"mutations": {"nuc": ["G3231T", "C3828T", "C4551T", "T12136C", "A12850G", "G20489T", "C21364T", "A23064C", "C28890T", "G29140A"], "S": ["N501T"]}, "labels": {"aa": "S: N501T"}}}, {"name": "USA/MP_NCOV20-21390/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4112021857923, "confidence": [2020.4112021857923, 2020.4112021857923]}, "tsne_x": {"value": -2.6809392976385724}, "umap_x": {"value": 6.47834}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5977322}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0052143316471165}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.070877327036712}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.50199874841759}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nebraska"}, "mds2": {"value": 3.924091122115071}, "mds3": {"value": 2.702494588714007}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.171983993297074}}, "branch_attrs": {"mutations": {"nuc": ["T4651C", "C6582T", "T13996G", "C18261T"]}}}]}]}, {"name": "NODE_0000951", "node_attrs": {"div": 7, "num_date": {"value": 2020.3208969259877, "confidence": [2020.1521514350973, 2020.3888267135617]}}, "branch_attrs": {"mutations": {"nuc": ["A10323G"]}}, "children": [{"name": "NODE_0000952", "node_attrs": {"div": 9, "num_date": {"value": 2020.3624491060184, "confidence": [2020.2475949826646, 2020.4841963628412]}}, "branch_attrs": {"mutations": {"nuc": ["T15276A", "G28842T"]}}, "children": [{"name": "USA/TG704492/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9959016393443, "confidence": [2020.9959016393443, 2020.9959016393443]}, "tsne_x": {"value": -4.191172016883672}, "umap_x": {"value": 3.472023}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6187885}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 30.13413993904899}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.88155054068434}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 20.661179925981084}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 5.399745555035132}, "mds3": {"value": 5.708894290870658}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.496987362562328}}, "branch_attrs": {"mutations": {"nuc": ["C2453T", "T2746C", "A5553G", "C10450T", "C16428T", "G20274T", "C25433T", "C25941A", "C29627T"]}}}, {"name": "NODE_0000953", "node_attrs": {"div": 17, "num_date": {"value": 2020.5862553636623, "confidence": [2020.4832045358103, 2020.6251694359748]}}, "branch_attrs": {"mutations": {"nuc": ["C2710T", "C3885T", "G7936T", "C13957T", "T21462A", "C21575T", "A24010G", "G29810T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}, "children": [{"name": "USA/MN-MDH-1952/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.6653005464482, "confidence": [2020.6653005464482, 2020.6653005464482]}, "tsne_x": {"value": -4.062738064479085}, "umap_x": {"value": 2.8263104}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5131633}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.862460061184986}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -12.1505871963054}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.41739970695696}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Minnesota"}, "mds2": {"value": -5.926394996433565}, "mds3": {"value": 9.128913011508486}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.41933613803458}}, "branch_attrs": {"mutations": {"nuc": ["C799T", "C16675T", "C23809T"]}}}, {"name": "USA/MN-MDH-1949/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.7062841530055, "confidence": [2020.7062841530055, 2020.7062841530055]}, "tsne_x": {"value": -4.0657855264804805}, "umap_x": {"value": 2.4429286}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4182756}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.277597523175282}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -12.134472136359998}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.03840462976018}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Minnesota"}, "mds2": {"value": -9.97633133961607}, "mds3": {"value": 10.778996141636824}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.004633558887042}}, "branch_attrs": {"mutations": {"nuc": ["G373A", "C7528T", "A18432G", "C25046T", "A25256C"], "S": ["P1162S", "I1232L"]}, "labels": {"aa": "S: P1162S, I1232L"}}}]}]}, {"name": "NODE_0000405", "node_attrs": {"div": 7, "num_date": {"value": 2020.3267829511574, "confidence": [2020.1632749591424, 2020.401398291176]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-14059/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4877049180327, "confidence": [2020.4877049180327, 2020.4877049180327]}, "tsne_x": {"value": -1.9425499488611089}, "umap_x": {"value": 4.9853063}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1126297}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.564842866336682}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.453"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.547844155116866}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.720964000275714}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": 3.590461547534868}, "mds3": {"value": 4.162268155500586}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.365627509805228}}, "branch_attrs": {"mutations": {"nuc": ["G61T", "C2668T", "G16365T", "A23572G", "C23896T", "C28603T", "C29769T"], "S": ["I670M"]}, "labels": {"aa": "S: I670M"}}}, {"name": "NODE_0000955", "node_attrs": {"div": 11, "num_date": {"value": 2020.5285735943887, "confidence": [2020.4083942176503, 2020.616019217545]}}, "branch_attrs": {"mutations": {"nuc": ["G569C", "C28310T", "G28857A", "C28892A"]}}, "children": [{"name": "KEN/C66867/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_x": {"value": -2.297775100153803}, "umap_x": {"value": 4.794122}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2267795}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.239763378101408}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -12.668632584595006}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.69166158882824}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 2.091037268578201}, "mds3": {"value": 5.657045782217274}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.848189280721659}}, "branch_attrs": {"mutations": {"nuc": ["C2485T", "G11083T", "T27618C", "G27708T"]}}}, {"name": "NODE_0000956", "node_attrs": {"div": 14, "num_date": {"value": 2020.6211207234853, "confidence": [2020.5776788919936, 2020.6443714311288]}}, "branch_attrs": {"mutations": {"nuc": ["G448A", "G21800T", "C22687T"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}, "children": [{"name": "KEN/C74510/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8838797814208, "confidence": [2020.8838797814208, 2020.8838797814208]}, "tsne_x": {"value": -2.2281067482610584}, "umap_x": {"value": 4.334207}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4262388}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.771373526229186}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -12.524081222904073}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.943402456826238}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 3.0348098503210736}, "mds3": {"value": 4.208949864093508}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.6780675728382175}}, "branch_attrs": {"mutations": {"nuc": ["T13210C", "C14220T"]}}}, {"name": "NODE_0000957", "node_attrs": {"div": 15, "num_date": {"value": 2020.6543715846994, "confidence": [2020.6289607061328, 2020.6543715846994]}}, "branch_attrs": {"mutations": {"nuc": ["G20718T"]}}, "children": [{"name": "KEN/C50264/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6543715846994, "confidence": [2020.6543715846994, 2020.6543715846994]}, "tsne_x": {"value": -2.2349775794134352}, "umap_x": {"value": 4.9196324}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1668072}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.910836407990076}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -12.542227952847494}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.19775951526995}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 7.14276883619619}, "mds3": {"value": 4.09737773726428}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.1223708911882886}}, "branch_attrs": {"mutations": {}}}, {"name": "KEN/C52504/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6653005464482, "confidence": [2020.6653005464482, 2020.6653005464482]}, "tsne_x": {"value": -2.2342130758547807}, "umap_x": {"value": 5.3680186}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.950456}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 40.88882768791598}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -12.55439603085606}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 10.22894777969329}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 3.988906939250953}, "mds3": {"value": 5.666024542268498}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.105976890555387}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}, {"name": "NODE_0000410", "node_attrs": {"div": 6, "num_date": {"value": 2020.1254160351916, "confidence": [2020.084398020959, 2020.1690027877407]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000846", "node_attrs": {"div": 7, "num_date": {"value": 2020.2161196121015, "confidence": [2020.1725570709248, 2020.2592282544679]}}, "branch_attrs": {"mutations": {"nuc": ["G24368T"], "S": ["D936Y"]}, "labels": {"aa": "S: D936Y"}}, "children": [{"name": "DJI/NAMRU3_CL1/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_x": {"value": -2.911324730869864}, "umap_x": {"value": 6.985883}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3113551}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.00642244037231}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.66202313330013}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.791151230636793}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Djibouti"}, "mds2": {"value": 1.2969883800640898}, "mds3": {"value": 1.042862957863529}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1735853683038955}}, "branch_attrs": {"mutations": {"nuc": ["C14576T"]}}}, {"name": "SWE/01_SE100_21CS505358/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2636612021859, "confidence": [2020.2636612021859, 2020.2636612021859]}, "tsne_x": {"value": -2.9595923172150176}, "umap_x": {"value": 7.4344683}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0035474}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.787305678961258}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.303371983128926}, "country": {"value": "Sweden"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.670326466949712}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Sweden"}, "mds2": {"value": -0.8327848637628135}, "mds3": {"value": 2.96485813777759}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 16.90244805665201}}, "branch_attrs": {"mutations": {"nuc": ["C5581A", "G11083T", "C29730-", "A29731-", "C29732-", "C29733-", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-", "A29763-", "G29764-", "T29765-", "G29766-", "A29767-"]}}}]}, {"name": "NODE_0000413", "node_attrs": {"div": 6, "num_date": {"value": 2020.134585103069, "confidence": [2020.105588828199, 2020.1751074973188]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000849", "node_attrs": {"div": 7, "num_date": {"value": 2020.171138222575, "confidence": [2020.1432120420552, 2020.199228072263]}}, "branch_attrs": {"mutations": {"nuc": ["C27964T"]}}, "children": [{"name": "NODE_0000851", "node_attrs": {"div": 8, "num_date": {"value": 2020.2176035194307, "confidence": [2020.177795946796, 2020.3136925770898]}}, "branch_attrs": {"mutations": {"nuc": ["C10319T"]}}, "children": [{"name": "USA/WA-S3374/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.9139344262296, "confidence": [2020.9139344262296, 2020.9139344262296]}, "tsne_x": {"value": -2.496497134927249}, "umap_x": {"value": 2.290337}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2294536}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.172212697376939}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.577"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.516227204831855}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.368161700620107}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Washington"}, "mds2": {"value": 2.20344404691822}, "mds3": {"value": 17.555728538029825}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 11.094432230905582}}, "branch_attrs": {"mutations": {"nuc": ["G1186A", "T1482A", "C3045T", "T3756C", "C7834T", "C10030T", "A11782G", "C16694T", "C16997T", "T17407C", "C21057T", "C22388T", "A25105G", "G25234A", "C25546T", "C28892T"]}}}, {"name": "USA/TN-SPHL-01323/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.5204918032787, "confidence": [2020.5204918032787, 2020.5204918032787]}, "tsne_x": {"value": -3.611972131125888}, "umap_x": {"value": 4.6382914}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2841198}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.15836202014577}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.735050534920012}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.330536618133786}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tennessee"}, "mds2": {"value": 5.777770199829132}, "mds3": {"value": 9.820494044353255}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.116328160133092}}, "branch_attrs": {"mutations": {"nuc": ["T7033C", "C8177A", "G16710T", "T18342A", "G20176T", "G23587T", "A25121T", "G26918T", "G29810T"], "S": ["Q675H", "N1187Y"]}, "labels": {"aa": "S: Q675H, N1187Y"}}}]}, {"name": "NODE_0000416", "node_attrs": {"div": 7, "num_date": {"value": 2020.189072756456, "confidence": [2020.1584969651274, 2020.2017483045952]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-4097581-001/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.594262295082, "confidence": [2020.594262295082, 2020.594262295082]}, "tsne_x": {"value": -2.790651554689988}, "umap_x": {"value": 4.825758}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.159385}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.534168514503}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.336"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.611423899676335}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.991846493995377}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 1.3006506951229548}, "mds3": {"value": 7.005599320667388}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.435244654464499}}, "branch_attrs": {"mutations": {"nuc": ["C3042T", "C9967T", "G11083T", "C12473T", "C14724T", "G21786T", "A23416T", "G28899T"], "S": ["G75V"]}, "labels": {"aa": "S: G75V"}}}, {"name": "NODE_0000852", "node_attrs": {"div": 8, "num_date": {"value": 2020.2022306513386, "confidence": [2020.185060956193, 2020.2117486338798]}}, "branch_attrs": {"mutations": {"nuc": ["T833C"]}}, "children": [{"name": "USA/ID-QDX-650/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_x": {"value": -2.721913134355351}, "umap_x": {"value": 6.9175844}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3536001}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0043048932451}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.2909157699873}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.335299457020524}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Idaho"}, "mds2": {"value": 2.1427800996161404}, "mds3": {"value": 1.6559582182579808}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1685329272388105}}, "branch_attrs": {"mutations": {"nuc": ["C817T"]}}}, {"name": "NODE_0000418", "node_attrs": {"div": 8, "num_date": {"value": 2020.2161732570432, "confidence": [2020.1802075432831, 2020.2861965259196]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AK-PHL21227/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.6543715846994, "confidence": [2020.6543715846994, 2020.6543715846994]}, "tsne_x": {"value": -2.6541776855337}, "umap_x": {"value": 2.6060643}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4752967}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.991473414671825}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.426"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.572012311639742}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.835025445280547}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Alaska"}, "mds2": {"value": -12.836183168785762}, "mds3": {"value": 10.295383863726997}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1665098206369866}}, "branch_attrs": {"mutations": {"nuc": ["A2473G", "C5512T", "C6541T", "C9515T", "C11379T", "C17125T", "A19175C", "T19839C", "C21221T", "A21643G", "A22320G", "C23718T", "G25523T", "T29685G"], "S": ["D253G", "T719I"]}, "labels": {"aa": "S: D253G, T719I"}}}, {"name": "USA/UT-UPHL-2012780804/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6188524590164, "confidence": [2020.6188524590164, 2020.6188524590164]}, "tsne_x": {"value": -1.9908322864205752}, "umap_x": {"value": 4.2891097}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4329615}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.047714384313516}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.455148322811672}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.407338041522227}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 7.153054773116851}, "mds3": {"value": 4.424258866877374}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0825401878461063}}, "branch_attrs": {"mutations": {"nuc": ["C8389T", "G9705T", "G11521A", "C15540T", "C15928T", "C20823T", "G28899A", "G29260T"]}}}]}]}]}]}, {"name": "NODE_0000419", "node_attrs": {"div": 6, "num_date": {"value": 2020.156833157876, "confidence": [2020.1179798291223, 2020.183338774598]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000941", "node_attrs": {"div": 7, "num_date": {"value": 2020.200285158102, "confidence": [2020.17213846512, 2020.2199453551912]}}, "branch_attrs": {"mutations": {"nuc": ["A5011C"]}}, "children": [{"name": "USA/MI-QDX-722/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_x": {"value": -3.0624827763096008}, "umap_x": {"value": 7.192853}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1956422}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.006850545179708}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.650978471370273}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.875034833525231}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Michigan"}, "mds2": {"value": 1.6219592221472745}, "mds3": {"value": 1.0901170373790718}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1211397542554413}}, "branch_attrs": {"mutations": {"nuc": ["A97G"]}}}, {"name": "NODE_0000942", "node_attrs": {"div": 14, "num_date": {"value": 2020.704029043829, "confidence": [2020.5699319045093, 2020.8132755093868]}}, "branch_attrs": {"mutations": {"nuc": ["C12525T", "G19180T", "C27920T", "G28300T", "C28677T", "C28893T", "C29445T"]}}, "children": [{"name": "USA/MI-MDHHS-SC22290/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -4.843436450051788}, "umap_x": {"value": 4.217943}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4790714}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.902828020478562}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.311"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -12.514703276187369}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.826664721421745}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Michigan"}, "mds2": {"value": -1.626269329740429}, "mds3": {"value": 9.156555092617554}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.9227337852683055}}, "branch_attrs": {"mutations": {"nuc": ["G204T", "C10702T", "G14118T", "G21776A"], "S": ["G72R"]}, "labels": {"aa": "S: G72R"}}}, {"name": "NODE_0000422", "node_attrs": {"div": 14, "num_date": {"value": 2020.7603218995614, "confidence": [2020.587135810135, 2020.8695737475523]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TN-SPHL-3071/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.031506849315, "confidence": [2021.031506849315, 2021.031506849315]}, "tsne_x": {"value": -4.84741211430847}, "umap_x": {"value": 4.214822}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.462711}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.409547764956515}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.311"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -12.519290678356445}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.220252178250785}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tennessee"}, "mds2": {"value": -2.069901061469231}, "mds3": {"value": 8.878255348164107}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.9145997355644973}}, "branch_attrs": {"mutations": {"nuc": ["C2106T", "C3903T", "G11634T"]}}}, {"name": "USA/TN-SPHL-12714/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9357923497269, "confidence": [2020.9357923497269, 2020.9357923497269]}, "tsne_x": {"value": -4.852157573783074}, "umap_x": {"value": 3.5502949}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6197553}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.596790083380463}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.311"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -12.50302574422413}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.901602026376754}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tennessee"}, "mds2": {"value": 10.719339460112412}, "mds3": {"value": 5.375402788828092}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.865301456839208}}, "branch_attrs": {"mutations": {"nuc": ["C5672G", "C10582T", "C21597T", "C29095T"], "S": ["S12F"]}, "labels": {"aa": "S: S12F"}}}]}]}]}, {"name": "NODE_0000428", "node_attrs": {"div": 6, "num_date": {"value": 2020.156384738851, "confidence": [2020.1288161569896, 2020.1882682134044]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000429", "node_attrs": {"div": 6, "num_date": {"value": 2020.1809944774861, "confidence": [2020.1270038977584, 2020.2109788127277]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-MDHHS-SC21038/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2281420765028, "confidence": [2020.2281420765028, 2020.2281420765028]}, "tsne_x": {"value": -2.9676839102510657}, "umap_x": {"value": 7.637441}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.86125815}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 26.899667784386235}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.642481447126148}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 4.538194715089665}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Michigan"}, "mds2": {"value": 1.5509048252295272}, "mds3": {"value": 1.508122677676133}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 4.466703396118292}}, "branch_attrs": {"mutations": {"nuc": ["G12769T", "C13862T"]}}}, {"name": "NODE_0000434", "node_attrs": {"div": 6, "num_date": {"value": 2020.1964805792686, "confidence": [2020.1697634790469, 2020.218013067399]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000435", "node_attrs": {"div": 6, "num_date": {"value": 2020.2199453551912, "confidence": [2020.1989082985758, 2020.2199453551912]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-MDHHS-SC21593/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_x": {"value": -3.081491486732345}, "umap_x": {"value": 7.8991933}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.6581825}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 24.530790678394848}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.771240781763076}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 4.7541775180164665}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Michigan"}, "mds2": {"value": 1.163770888925754}, "mds3": {"value": 0.8320094244756275}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.447182244805606}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/DC-DFS-PHL-0033/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_x": {"value": -3.045814734962063}, "umap_x": {"value": 7.553045}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.9203911}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.259563703468515}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.802597361513511}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 5.996659627469197}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Washington DC"}, "mds2": {"value": 0.9358840508467572}, "mds3": {"value": 0.5697196342295425}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.850236052466121}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000436", "node_attrs": {"div": 6, "num_date": {"value": 2020.205449826362, "confidence": [2020.1842790763446, 2020.2274161771647]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2004110099/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2745901639344, "confidence": [2020.2745901639344, 2020.2745901639344]}, "tsne_x": {"value": -2.478962770326409}, "umap_x": {"value": 6.686782}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5040867}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 31.47827330920932}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.64196907137689}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 7.289959320100534}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 0.4773189423895618}, "mds3": {"value": 2.95807848281004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.153960228854929}}, "branch_attrs": {"mutations": {"nuc": ["T3124C", "C17172T", "A17429G", "C28849T"]}}}, {"name": "NODE_0000439", "node_attrs": {"div": 6, "num_date": {"value": 2020.215976025784, "confidence": [2020.2001480069869, 2020.2377537291216]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000442", "node_attrs": {"div": 6, "num_date": {"value": 2020.2332118548275, "confidence": [2020.2064077995042, 2020.25]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG274790/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.266393442623, "confidence": [2020.266393442623, 2020.266393442623]}, "tsne_x": {"value": -2.944481797656057}, "umap_x": {"value": 7.46962}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.96992785}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.0226786654643255}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.589856941478162}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.6827239034125965}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 0.6943823387821935}, "mds3": {"value": 0.922042149342926}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.448228719411556}}, "branch_attrs": {"mutations": {"nuc": ["G14023A", "C29870A"]}}}, {"name": "Morocc0/RMPS6/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_x": {"value": -3.007932864478966}, "umap_x": {"value": 7.523918}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.9413866}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.931437206385217}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.755664160131143}, "country": {"value": "Morocco"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.790385105912781}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Morocco"}, "mds2": {"value": 1.2760892944821125}, "mds3": {"value": 0.8671777653599323}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.976513380850324}}, "branch_attrs": {"mutations": {"nuc": ["C12970T"]}}}]}, {"name": "NODE_0000443", "node_attrs": {"div": 6, "num_date": {"value": 2020.2410154938225, "confidence": [2020.1959351478727, 2020.3990873983835]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "TUN/TUN_ADAGE_EZ504/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4139344262296, "confidence": [2020.4139344262296, 2020.4139344262296]}, "tsne_x": {"value": -2.026641044103316}, "umap_x": {"value": 5.963268}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7722812}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.154209960378034}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.832300890588256}, "country": {"value": "Tunisia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.816648853878457}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tunisia"}, "mds2": {"value": 1.541328621509792}, "mds3": {"value": 2.0572911736734207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.808755807646884}}, "branch_attrs": {"mutations": {"nuc": ["C9214T", "C10456T", "C10889T", "C23127T", "C25821T"], "S": ["A522V"]}, "labels": {"aa": "S: A522V"}}}, {"name": "NODE_0000444", "node_attrs": {"div": 6, "num_date": {"value": 2020.3291810859732, "confidence": [2020.1603288155375, 2020.4275956284152]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2006060405/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.4275956284152, "confidence": [2020.4275956284152, 2020.4275956284152]}, "tsne_x": {"value": -2.92898163961912}, "umap_x": {"value": 7.4470463}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.9874899}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 14.505018649861846}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.779791592826934}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.579849302267344}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 1.1175944826882749}, "mds3": {"value": 0.9465914683182168}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.382660223003471}}, "branch_attrs": {"mutations": {"nuc": ["G29427T"]}}}, {"name": "NODE_0000445", "node_attrs": {"div": 6, "num_date": {"value": 2020.3775647304449, "confidence": [2020.1583639800854, 2020.4663190506753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NMINBRE-PB-WGS-215866/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5204918032787, "confidence": [2020.5204918032787, 2020.5204918032787]}, "tsne_x": {"value": -2.683413458285248}, "umap_x": {"value": 5.851421}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8155888}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.553935376719217}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.01489168554554}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.319464539301704}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Mexico"}, "mds2": {"value": 1.9496857893345392}, "mds3": {"value": 1.7664938814530746}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8027806912399867}}, "branch_attrs": {"mutations": {"nuc": ["C1758T", "G3939A", "C5183T", "C12534T", "A22320G"], "S": ["D253G"]}, "labels": {"aa": "S: D253G"}}}, {"name": "NODE_0000865", "node_attrs": {"div": 10, "num_date": {"value": 2020.631994172734, "confidence": [2020.3478583890706, 2020.8601474278232]}}, "branch_attrs": {"mutations": {"nuc": ["T9867C", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "C25517T", "C27925T", "A28271-", "G28975A"]}}, "children": [{"name": "NODE_0000866", "node_attrs": {"div": 18, "num_date": {"value": 2021.1430382210713, "confidence": [2021.0613312938617, 2021.2068440326032]}}, "branch_attrs": {"mutations": {"nuc": ["A16500C", "A20262G", "C21575T", "C21846T", "A22320G", "G23012A", "C23664T", "C28869T"], "S": ["L5F", "T95I", "D253G", "E484K", "A701V"]}, "labels": {"aa": "S: L5F, T95I, D253G, E484K, A701V"}}, "children": [{"name": "USA/NJ-PHEL-21-16160/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_x": {"value": 0.5812655414055472}, "umap_x": {"value": 2.9866042}, "Nextstrain_clade": {"value": "21F (Iota)"}, "umap_y": {"value": -2.535712}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.952660450147628}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.526"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.141852984518314}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.29570292848131}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -8.207440547329984}, "mds3": {"value": 8.709541773352054}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.1388905150742171}}, "branch_attrs": {"mutations": {"nuc": ["A143G", "C15720T", "G23587T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}, {"name": "USA/NY-PRL-2021_0319_00A21/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_x": {"value": 0.5844045439872216}, "umap_x": {"value": 3.1509275}, "Nextstrain_clade": {"value": "21F (Iota)"}, "umap_y": {"value": -2.5362618}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.772444213740128}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.526"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.143926148414929}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.166500131074542}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -7.330696569322688}, "mds3": {"value": 11.000290436707768}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 8.58875627501385}}, "branch_attrs": {"mutations": {"nuc": ["C2536T", "T12811A"]}}}]}, {"name": "NODE_0000867", "node_attrs": {"div": 22, "num_date": {"value": 2021.0885513852056, "confidence": [2020.927587827566, 2021.18632901052]}}, "branch_attrs": {"mutations": {"nuc": ["C5581T", "A9749G", "C9891T", "G11804A", "A21801G", "T21992-", "A21993-", "T21994-", "T22032C", "T22917G", "C24138A", "C25413T", "C25703T", "G28044T", "C28887T"], "S": ["D80G", "Y144-", "F157S", "L452R", "T859N"]}, "labels": {"aa": "S: D80G, Y144-, F157S, L452R, T859N"}}, "children": [{"name": "USA/MN-CDC-ASC210022575/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.231506849315, "confidence": [2021.231506849315, 2021.231506849315]}, "tsne_x": {"value": -2.9906970632509764}, "umap_x": {"value": 1.9117174}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9672481}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.370400376584}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.637"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -11.54497890473385}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.098332866047382}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Minnesota"}, "mds2": {"value": 22.57103972286944}, "mds3": {"value": 13.80970304855589}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -14.324970617308718}}, "branch_attrs": {"mutations": {"nuc": ["G5300T", "C8293T", "C17502T", "A21137G", "G24410C"], "S": ["D950H"]}, "labels": {"aa": "S: D950H"}}}, {"name": "USA/NC-CDC-MMB08839076/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_x": {"value": -2.992093017282824}, "umap_x": {"value": 1.842348}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9038727}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.8197063865463589}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.637"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -11.53937340926818}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.55316359409288}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "North Carolina"}, "mds2": {"value": 22.407195180810813}, "mds3": {"value": 13.736915935286165}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -1.233090758391271}}, "branch_attrs": {"mutations": {"nuc": ["T6345C", "T7249C", "T7767C", "A10317G", "C12880T", "C17676T"]}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000449", "node_attrs": {"div": 6, "num_date": {"value": 2020.1811378371174, "confidence": [2020.126714932308, 2020.1914716582385]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000821", "node_attrs": {"div": 7, "num_date": {"value": 2020.3300353713325, "confidence": [2020.1283191092605, 2020.4038490329733]}}, "branch_attrs": {"mutations": {"nuc": ["C11916T"]}}, "children": [{"name": "NODE_0000822", "node_attrs": {"div": 11, "num_date": {"value": 2020.4822220231963, "confidence": [2020.4327362046454, 2020.5232240437158]}}, "branch_attrs": {"mutations": {"nuc": ["C1385T", "G1738T", "G3242A", "C28087T"]}}, "children": [{"name": "USA/0-15830-2/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5232240437158, "confidence": [2020.5232240437158, 2020.5232240437158]}, "tsne_x": {"value": -1.82660531908501}, "umap_x": {"value": 5.6872377}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8033746}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.699716897458707}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.509"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.650235642580418}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.399057403672227}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Tennessee"}, "mds2": {"value": 3.1374455707252347}, "mds3": {"value": 2.73271090457053}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.613105124373331}}, "branch_attrs": {"mutations": {"nuc": ["C26936T"]}}}, {"name": "USA/MI-MDHHS-SC21665/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5341530054645, "confidence": [2020.5341530054645, 2020.5341530054645]}, "tsne_x": {"value": -1.880934224125212}, "umap_x": {"value": 6.1484036}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6804098}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 13.15013789606183}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.509"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.712823869883223}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.409910035653658}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Michigan"}, "mds2": {"value": 4.207157213130504}, "mds3": {"value": 1.7766868437004897}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.844799820713638}}, "branch_attrs": {"mutations": {"nuc": ["C26340T"]}}}]}, {"name": "NODE_0000823", "node_attrs": {"div": 10, "num_date": {"value": 2020.482642620567, "confidence": [2020.314387527199, 2020.6453848591652]}}, "branch_attrs": {"mutations": {"nuc": ["C18998T", "C28863T", "G29540A"]}}, "children": [{"name": "ARG/Cordoba-2932/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.700819672131, "confidence": [2020.700819672131, 2020.700819672131]}, "tsne_x": {"value": -3.3200545382033746}, "umap_x": {"value": 4.5945287}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2985096}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.860361069045233}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.520756811657415}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.27778550168027}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": 2.2171450339112377}, "mds3": {"value": 4.1549678329888335}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.57663668221812}}, "branch_attrs": {"mutations": {"nuc": ["C4540T", "A8031G", "G11083T", "G20758T", "C21714T"], "S": ["T51I"]}, "labels": {"aa": "S: T51I"}}}, {"name": "NODE_0000454", "node_attrs": {"div": 10, "num_date": {"value": 2020.5318181714233, "confidence": [2020.3151600456122, 2020.6437578022208]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARG/Cordoba-15976/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_x": {"value": -3.273112025451431}, "umap_x": {"value": 4.5210323}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3337965}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.751112282458386}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.513385447800305}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.082051812695084}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": 9.67332653869689}, "mds3": {"value": 4.486419985362343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.906273389146314}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "G1274T", "G8287A", "C18692T", "G23522C", "C29358T"], "S": ["E654Q"]}, "labels": {"aa": "S: E654Q"}}}, {"name": "NODE_0000456", "node_attrs": {"div": 10, "num_date": {"value": 2020.5717044933278, "confidence": [2020.3152934743987, 2020.6650410233713]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Argentina/UW21020350755/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_x": {"value": -3.265246308288768}, "umap_x": {"value": 3.2005625}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5997162}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.034267229317818}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.452961095714716}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.85816884688359}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": 7.831800000846434}, "mds3": {"value": 11.080992171615769}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.0437296101412}}, "branch_attrs": {"mutations": {"nuc": ["A1587G", "G11596T", "C14120T", "T14784C", "C15738T", "G18318T", "G20060T", "C21008T", "G23438T", "C27804T"], "S": ["A626S"]}, "labels": {"aa": "S: A626S"}}}, {"name": "Argentina/UW20122964117/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -3.372067161371386}, "umap_x": {"value": 2.410955}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3852625}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.045854788587418}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.448676562897372}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.621435195688964}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": -12.912122077965808}, "mds3": {"value": 12.9938712919258}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.061975362968617}}, "branch_attrs": {"mutations": {"nuc": ["C222T", "C1426T", "C4423T", "C7834T", "C9502A", "C10450T", "C13517T", "T15669C", "G19684A", "A24673G", "A25579G", "G25912T", "G28001T"]}}}]}]}]}]}, {"name": "NODE_0000458", "node_attrs": {"div": 6, "num_date": {"value": 2020.1816196550435, "confidence": [2020.1294595648376, 2020.195659540213]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000459", "node_attrs": {"div": 6, "num_date": {"value": 2020.1897974839528, "confidence": [2020.130567963014, 2020.1978052102058]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000460", "node_attrs": {"div": 6, "num_date": {"value": 2020.1958244908726, "confidence": [2020.1325152030215, 2020.2035519125684]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ISR/hCov-19-Israel-CVL-n-5853/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2035519125684, "confidence": [2020.2035519125684, 2020.2035519125684]}, "tsne_x": {"value": -2.990671295066462}, "umap_x": {"value": 7.3481474}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0636017}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.928920689955545}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.765655182648011}, "country": {"value": "Israel"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.191826011882846}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Israel"}, "mds2": {"value": 1.228747606582048}, "mds3": {"value": 0.847318333729986}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.974315733405724}}, "branch_attrs": {"mutations": {"nuc": ["A8651C"]}}}, {"name": "NODE_0000848", "node_attrs": {"div": 8, "num_date": {"value": 2020.322851628104, "confidence": [2020.165318029821, 2020.3579793880274]}}, "branch_attrs": {"mutations": {"nuc": ["T8041C", "G22225T"]}}, "children": [{"name": "USA/TX-DSHS-0581/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_x": {"value": -2.1596525214622564}, "umap_x": {"value": 6.648551}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5341873}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 51.00794767720811}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.232997740628434}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 5.045049289177347}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Texas"}, "mds2": {"value": 3.02760085033508}, "mds3": {"value": 4.231036729741524}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.6495748977302699}}, "branch_attrs": {"mutations": {"nuc": ["G8120A", "C10138T", "C18570T"]}}}, {"name": "USA/TX-DSHS-3803/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4767759562842, "confidence": [2020.4767759562842, 2020.4767759562842]}, "tsne_x": {"value": -3.7915468113841047}, "umap_x": {"value": 5.0921307}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0809512}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.598048586946323}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.397108867943915}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.823058330184583}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Texas"}, "mds2": {"value": 7.82957883658833}, "mds3": {"value": 3.307464328263832}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.235681383707046}}, "branch_attrs": {"mutations": {"nuc": ["C1572T", "C12970T", "A16052G", "A21860-", "T21861-", "A21862-", "G25543T", "C28868T"], "S": ["I100-"]}, "labels": {"aa": "S: I100-"}}}]}]}, {"name": "NODE_0000859", "node_attrs": {"div": 8, "num_date": {"value": 2020.249631083849, "confidence": [2020.2151682167016, 2020.274019947102]}}, "branch_attrs": {"mutations": {"nuc": ["C16260T", "C28821A"]}}, "children": [{"name": "USA/WV118922/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2745901639344, "confidence": [2020.2745901639344, 2020.2745901639344]}, "tsne_x": {"value": -3.147129793802126}, "umap_x": {"value": 6.9690776}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.334388}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.723883223207352}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.504485348042577}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.267354907984261}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "West Virginia"}, "mds2": {"value": 2.0669921158264213}, "mds3": {"value": 2.6683997659423926}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.919081664696121}}, "branch_attrs": {"mutations": {"nuc": ["T11525C"]}}}, {"name": "NODE_0000466", "node_attrs": {"div": 8, "num_date": {"value": 2020.3242990357476, "confidence": [2020.1663260313433, 2020.5374303222616]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-MGH-02714/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.7418032786886, "confidence": [2020.7418032786886, 2020.7418032786886]}, "tsne_x": {"value": -3.4650324395327097}, "umap_x": {"value": 4.8160076}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2399068}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.563237074830383}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.05855919491565}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.862409322058792}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 8.044855773070415}, "mds3": {"value": 2.258578638361988}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.7698322604189063}}, "branch_attrs": {"mutations": {"nuc": ["G4201T", "C6543T", "A8558G", "C19602T", "G24368T", "G25088T", "A27107T"], "S": ["D936Y", "V1176F"]}, "labels": {"aa": "S: D936Y, V1176F"}}}, {"name": "USA/CO-CDPHE-2100143084/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.974043715847, "confidence": [2020.974043715847, 2020.974043715847]}, "tsne_x": {"value": -3.8475837154690784}, "umap_x": {"value": 4.6919336}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2649884}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 12.35487193239284}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.374906725865245}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 1.6271651445240023}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -14.213257236715096}, "mds3": {"value": 1.88655261138247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 19.831942789817425}}, "branch_attrs": {"mutations": {"nuc": ["C3773T", "C7086T", "A11413G", "C13458T", "T14191C", "C16092T", "G23900C", "A24253T", "G28903T", "G29808T"], "S": ["E780Q"]}, "labels": {"aa": "S: E780Q"}}}]}]}]}, {"name": "NODE_0000467", "node_attrs": {"div": 6, "num_date": {"value": 2020.1951038752804, "confidence": [2020.1732188095164, 2020.2197787172647]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/948072/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2363387978141, 2020.2363387978141]}, "tsne_x": {"value": -2.994481084447852}, "umap_x": {"value": 7.700854}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.81852674}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.00440519659352}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.766651369638913}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.89521662405468}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Iowa"}, "mds2": {"value": 1.161320642857746}, "mds3": {"value": 0.8182749366769663}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1731838691500608}}, "branch_attrs": {"mutations": {"nuc": ["G25244T"], "S": ["V1228L"]}, "labels": {"aa": "S: V1228L"}}}, {"name": "NODE_0000468", "node_attrs": {"div": 6, "num_date": {"value": 2020.1974281362993, "confidence": [2020.1838548927371, 2020.224960796408]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000470", "node_attrs": {"div": 6, "num_date": {"value": 2020.2156649856615, "confidence": [2020.1848606191043, 2020.2290874271744]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FHCRC-3198/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_x": {"value": -2.882577902922327}, "umap_x": {"value": 7.045231}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2998834}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.232543130007198}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.371"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.710655035179249}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.764243149805416}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Washington"}, "mds2": {"value": 1.363392960126148}, "mds3": {"value": 1.0230470407686247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.302285087883796}}, "branch_attrs": {"mutations": {"nuc": ["C12880T", "G29553A"]}}}, {"name": "NODE_0000833", "node_attrs": {"div": 7, "num_date": {"value": 2020.3310697757697, "confidence": [2020.2472056733986, 2020.4849201547195]}}, "branch_attrs": {"mutations": {"nuc": ["G28857A"]}}, "children": [{"name": "KEN/C46862/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6325136612022, "confidence": [2020.6325136612022, 2020.6325136612022]}, "tsne_x": {"value": -3.769536450678991}, "umap_x": {"value": 4.26389}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3926277}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 41.73927046906724}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.520505545571975}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 16.51517620727056}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 0.8167866978152761}, "mds3": {"value": 8.167354158245576}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.630642261525305}}, "branch_attrs": {"mutations": {"nuc": ["C1060T", "A1844C", "G3152T", "T7168C", "C10954T", "C11752T", "C17397T", "T25468C", "T27901C", "C28603T"]}}}, {"name": "NODE_0000472", "node_attrs": {"div": 7, "num_date": {"value": 2020.432182907025, "confidence": [2020.249913509599, 2020.5969945355191]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/K32598/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.5969945355191, "confidence": [2020.5969945355191, 2020.5969945355191]}, "tsne_x": {"value": -3.0829981257365167}, "umap_x": {"value": 7.281319}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1271352}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.994852152510692}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.578525144439544}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.297823951475611}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 1.5497513388891622}, "mds3": {"value": 1.273013523686095}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1716900370642916}}, "branch_attrs": {"mutations": {"nuc": ["C28830T"]}}}, {"name": "KEN/C71645/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8756830601094, "confidence": [2020.8756830601094, 2020.8756830601094]}, "tsne_x": {"value": -3.843943213142396}, "umap_x": {"value": 3.3980913}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6193004}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.783231666851919}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.059064940304}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.915315284058345}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 10.314794409099605}, "mds3": {"value": 3.543681992841106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.112153530521043}}, "branch_attrs": {"mutations": {"nuc": ["G127T", "C233T", "C2583T", "G7328T", "C7482T", "C10036T", "C10228T", "G18960A", "C24616T", "C25771T", "C28923T", "G29348T"]}}}]}]}]}, {"name": "NODE_0000474", "node_attrs": {"div": 6, "num_date": {"value": 2020.2148945815707, "confidence": [2020.1886252744478, 2020.2445082342067]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000476", "node_attrs": {"div": 6, "num_date": {"value": 2020.2161912474762, "confidence": [2020.1939773426293, 2020.250485790027]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-UPHL-2009309/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.372950819672, "confidence": [2020.372950819672, 2020.372950819672]}, "tsne_x": {"value": -2.279667380542583}, "umap_x": {"value": 6.073601}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7310512}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.046569529716575}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -15.057658991518228}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.682116072240545}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 3.127112810287221}, "mds3": {"value": 2.4701645576419624}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0753702272628807}}, "branch_attrs": {"mutations": {"nuc": ["C1093T", "A1731C", "C4795T", "A7367G", "T11940C"]}}}, {"name": "NODE_0000477", "node_attrs": {"div": 6, "num_date": {"value": 2020.224674788801, "confidence": [2020.1960893976727, 2020.252993800455]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000478", "node_attrs": {"div": 6, "num_date": {"value": 2020.240544974786, "confidence": [2020.1958733294837, 2020.260968465392]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "FRA/IHUCOVID-011476_Illu1/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_x": {"value": -3.029243084775781}, "umap_x": {"value": 7.689188}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.81972414}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.584031824206211}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.74118783951256}, "country": {"value": "France"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.0771894104125295}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "France"}, "mds2": {"value": 1.0216926403300663}, "mds3": {"value": 0.7297690860290471}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.51748253057877}}, "branch_attrs": {"mutations": {"nuc": ["G27996T"]}}}, {"name": "NODE_0000480", "node_attrs": {"div": 6, "num_date": {"value": 2020.2586003914673, "confidence": [2020.1981045770617, 2020.285519125683]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WI-UW-353/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.285519125683, "confidence": [2020.285519125683, 2020.285519125683]}, "tsne_x": {"value": -3.0453664985877413}, "umap_x": {"value": 7.553826}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.91312814}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.005582094627405}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.800523473648848}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.178253498559391}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Illinois"}, "mds2": {"value": 0.9071597663594572}, "mds3": {"value": 0.4616846914477456}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1748690473528336}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000481", "node_attrs": {"div": 6, "num_date": {"value": 2020.2657625955862, "confidence": [2020.197659825163, 2020.3105418720909]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-DSHS-3001/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_x": {"value": -1.8147154504009555}, "umap_x": {"value": 5.357742}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9699787}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 46.45865776236143}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -15.316451718479806}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 9.23966968581456}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Texas"}, "mds2": {"value": 2.4865433977128912}, "mds3": {"value": 7.517041566330336}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.91439375754258}}, "branch_attrs": {"mutations": {"nuc": ["T6905G", "C13994T", "C17518T", "G21724T", "G23120T", "C25667T", "C26964T", "C27603T"], "S": ["L54F", "A520S"]}, "labels": {"aa": "S: L54F, A520S"}}}, {"name": "USA/VA-CDC-3831425-001/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3811475409836, "confidence": [2020.3811475409836, 2020.3811475409836]}, "tsne_x": {"value": -2.4891799613586505}, "umap_x": {"value": 6.1260304}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7082613}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.666501397621734}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.942736574153171}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.833639772893925}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 1.8637472225323104}, "mds3": {"value": 1.808462356353561}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.67248800706423}}, "branch_attrs": {"mutations": {"nuc": ["G1042A", "C14925T", "C24381T", "A27759-", "T27760-", "T27761-", "G27762-", "G28985T"], "S": ["S940F"]}, "labels": {"aa": "S: S940F"}}}]}]}]}, {"name": "NODE_0000482", "node_attrs": {"div": 6, "num_date": {"value": 2020.2329886297175, "confidence": [2020.1960920955323, 2020.2591250512817]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-2459/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.386612021858, "confidence": [2020.386612021858, 2020.386612021858]}, "tsne_x": {"value": -3.552152151697352}, "umap_x": {"value": 5.1067233}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0989413}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.075780838902961}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.68307710293045}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.870828342447126}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": 1.0532595189048288}, "mds3": {"value": 5.420052812694771}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 9.112791959109028}}, "branch_attrs": {"mutations": {"nuc": ["C1420T", "C7765T", "C11379T", "A20755C", "A21457G", "G26199T", "G27754T"]}}}, {"name": "NODE_0000483", "node_attrs": {"div": 6, "num_date": {"value": 2020.2471948708505, "confidence": [2020.195140123463, 2020.2729878907755]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NE-11644/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3483606557377, "confidence": [2020.3483606557377, 2020.3483606557377]}, "tsne_x": {"value": -1.860941169856704}, "umap_x": {"value": 5.775325}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8063409}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.008522196680247}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.148659299669726}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.233852460588311}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nebraska"}, "mds2": {"value": 4.436191946746937}, "mds3": {"value": 2.87507959781741}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1787515678913175}}, "branch_attrs": {"mutations": {"nuc": ["C19488T", "T21294A", "G21295A", "G21296A", "C21622T", "T25036C"]}}}, {"name": "NODE_0000484", "node_attrs": {"div": 6, "num_date": {"value": 2020.2658089358456, "confidence": [2020.1950937171532, 2020.3100785992765]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-MDH-1632/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_x": {"value": -2.9632469105279173}, "umap_x": {"value": 7.244125}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1098089}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.334172991957724}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.751032360269322}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.936320019077966}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Minnesota"}, "mds2": {"value": 1.086888962343314}, "mds3": {"value": 0.7530502630430698}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.413185481100683}}, "branch_attrs": {"mutations": {"nuc": ["A27821G"]}}}, {"name": "NODE_0000948", "node_attrs": {"div": 12, "num_date": {"value": 2020.432706712335, "confidence": [2020.373180395119, 2020.4940517573086]}}, "branch_attrs": {"mutations": {"nuc": ["T7767C", "G11087A", "C13452T", "C21161T", "C23604T", "G25455T"], "S": ["P681L"]}, "labels": {"aa": "S: P681L"}}, "children": [{"name": "USA/CO-CDPHE-2007190512/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_x": {"value": -3.927684308664163}, "umap_x": {"value": 4.3000736}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4045732}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 23.283170450698822}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.570"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.014676605236083}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 13.468840298262757}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -2.8471113415962224}, "mds3": {"value": 10.646304098781249}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 7.930268415240381}}, "branch_attrs": {"mutations": {"nuc": ["T4273C", "C17762T", "C18512T", "G26730T", "G29027T"]}}}, {"name": "USA/CO-CDPHE-2008043318/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5887978142077, 2020.5887978142077]}, "tsne_x": {"value": -3.8928008876872666}, "umap_x": {"value": 5.039639}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0902357}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.676341351092642}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.570"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.086264198837892}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.35008071469674}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 7.188967160696517}, "mds3": {"value": 4.559806068455005}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.743191065785775}}, "branch_attrs": {"mutations": {"nuc": ["G1135T", "C28744T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000486", "node_attrs": {"div": 6, "num_date": {"value": 2020.223186564596, "confidence": [2020.1919005010052, 2020.257747087085]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NE-10851/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3428961748634, "confidence": [2020.3428961748634, 2020.3428961748634]}, "tsne_x": {"value": -2.9133443305534272}, "umap_x": {"value": 7.2125754}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1563466}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.24885797987893}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.74286193520747}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 6.371511520332696}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nebraska"}, "mds2": {"value": 1.5900691770772648}, "mds3": {"value": 1.2897118228039144}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8456916079157265}}, "branch_attrs": {"mutations": {"nuc": ["G1172T", "G2144A"]}}}, {"name": "NODE_0000487", "node_attrs": {"div": 6, "num_date": {"value": 2020.2411728376235, "confidence": [2020.1916589434004, 2020.2704068881874]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000961", "node_attrs": {"div": 11, "num_date": {"value": 2020.328433293813, "confidence": [2020.3172198137052, 2020.3346994535518]}}, "branch_attrs": {"mutations": {"nuc": ["C6651T", "C18555T", "C18744T", "G20580T", "C25572T"]}}, "children": [{"name": "AUS/VIC1624/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3565573770493, "confidence": [2020.3565573770493, 2020.3565573770493]}, "tsne_x": {"value": -0.6638677505154934}, "umap_x": {"value": 6.2745643}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6168671}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.391427717859464}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.479643768243657}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.81411215031457}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 2.376431663270908}, "mds3": {"value": 2.717379306028722}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.50893251859383}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC1641/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3346994535518, "confidence": [2020.3346994535518, 2020.3346994535518]}, "tsne_x": {"value": -0.67357110825595}, "umap_x": {"value": 6.0373144}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.725751}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.947748135589729}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.477587511690858}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.717875852433634}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 1.7721450399809824}, "mds3": {"value": 1.7874302619758893}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.507664689625182}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC1883/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3346994535518, "confidence": [2020.3346994535518, 2020.3346994535518]}, "tsne_x": {"value": -0.6684449932459304}, "umap_x": {"value": 6.5435405}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5440357}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.824799055200062}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.485990216805396}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.257656297493288}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": -1.3874154220355592}, "mds3": {"value": 1.9122635762612707}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.922144344996452}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000964", "node_attrs": {"div": 12, "num_date": {"value": 2020.3401632743812, "confidence": [2020.3299855880223, 2020.3428961748634]}}, "branch_attrs": {"mutations": {"nuc": ["G23015C"], "S": ["G485R"]}, "labels": {"aa": "S: G485R"}}, "children": [{"name": "AUS/VIC1716/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.3811475409836, "confidence": [2020.3811475409836, 2020.3811475409836]}, "tsne_x": {"value": -0.6194631537749684}, "umap_x": {"value": 6.396158}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6461829}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 13.404168360177142}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.4856531141201}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.77271625464506}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": -1.866873893221644}, "mds3": {"value": 2.164778547814898}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.876494714845181}}, "branch_attrs": {"mutations": {"nuc": ["C9724T"]}}}, {"name": "AUS/VIC1632/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3428961748634, "confidence": [2020.3428961748634, 2020.3428961748634]}, "tsne_x": {"value": -0.6087226037248155}, "umap_x": {"value": 5.948254}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7767241}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.089445273394644}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.478921486380374}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.299550520563583}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 2.4892113060167307}, "mds3": {"value": 3.0111199741274945}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.096774170374523}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000490", "node_attrs": {"div": 12, "num_date": {"value": 2020.3432396866488, "confidence": [2020.330763946054, 2020.3572815585305]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1708/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3784153005465, "confidence": [2020.3784153005465, 2020.3784153005465]}, "tsne_x": {"value": -0.6094877578404606}, "umap_x": {"value": 6.0143847}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7074784}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.6159833003503765}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.480114176414148}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.3562684927411}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 2.680310699761622}, "mds3": {"value": 3.486744379068008}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.11463867884356}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000491", "node_attrs": {"div": 12, "num_date": {"value": 2020.3592896174864, "confidence": [2020.345566400692, 2020.3592896174864]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1782/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3592896174864, "confidence": [2020.3592896174864, 2020.3592896174864]}, "tsne_x": {"value": -0.6714712528405632}, "umap_x": {"value": 6.537094}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5226821}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.313254388476864}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.48682649855366}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.400470362011001}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": -1.3802889720336944}, "mds3": {"value": 1.826872388585488}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.954128097587098}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC1659/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -0.6070463073418884}, "umap_x": {"value": 5.7035956}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8725016}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.474189501908698}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "tsne_y": {"value": -14.476388752438067}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.94218395322606}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 0.9597018846957928}, "mds3": {"value": 2.2830868570421967}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.684258989844947}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000869", "node_attrs": {"div": 7, "num_date": {"value": 2020.3194298953786, "confidence": [2020.1498389178905, 2020.4476613748752]}}, "branch_attrs": {"mutations": {"nuc": ["C28887T"]}}, "children": [{"name": "NODE_0000493", "node_attrs": {"div": 7, "num_date": {"value": 2020.3279243360457, "confidence": [2020.1555423802556, 2020.4541764687228]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IRQ/USAFSAM-S088/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.457650273224, "confidence": [2020.457650273224, 2020.457650273224]}, "tsne_x": {"value": -2.0047735879122954}, "umap_x": {"value": 6.186468}, "Nextstrain_clade": {"value": "20C"}, "umap_y": {"value": -1.6684483}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.746882076781017}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.94032410699463}, "country": {"value": "Iraq"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.506798345668816}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Iraq"}, "mds2": {"value": 1.987669834545154}, "mds3": {"value": 2.9929782223561032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.667385311559117}}, "branch_attrs": {"mutations": {"nuc": ["C1302T", "C10834T", "C14265T", "C23127T"], "S": ["A522V"]}, "labels": {"aa": "S: A522V"}}}, {"name": "NODE_0000884", "node_attrs": {"div": 9, "num_date": {"value": 2020.380288246426, "confidence": [2020.1753398016738, 2020.5655547021536]}}, "branch_attrs": {"mutations": {"nuc": ["T1059C", "C18877T"]}}, "children": [{"name": "NODE_0000885", "node_attrs": {"div": 10, "num_date": {"value": 2020.4786293027148, "confidence": [2020.2174366500508, 2020.6179176035944]}}, "branch_attrs": {"mutations": {"nuc": ["C17012T"]}}, "children": [{"name": "NZL/21CV0188/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.3301369863013, "confidence": [2021.3301369863013, 2021.3301369863013]}, "tsne_x": {"value": -3.71946557071434}, "umap_x": {"value": 1.8758295}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8982719}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.023947863566117}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.466.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.56808674123473}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.705524773474902}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Zealand"}, "mds2": {"value": -16.687210267308448}, "mds3": {"value": 16.52887863773815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.0300441110652646}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "C3096T", "A3207T", "C3768T", "G4142A", "C5184T", "A10323G", "A10978T", "C11195T", "A11782G", "C12880T", "T22219C", "C22879A", "C23604G", "C25561G", "G26426T", "C26735T", "C29718T", "C29743T", "A29797G"], "S": ["N439K", "P681R"]}, "labels": {"aa": "S: N439K, P681R"}}}, {"name": "NODE_0000886", "node_attrs": {"div": 15, "num_date": {"value": 2020.6687430769375, "confidence": [2020.539220987669, 2020.748176445137]}}, "branch_attrs": {"mutations": {"nuc": ["T606C", "C1060T", "C7086T", "C10507T", "C26060T"]}}, "children": [{"name": "Colombia/UW21010386953/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0068493150684, "confidence": [2021.0068493150684, 2021.0068493150684]}, "tsne_x": {"value": -0.9496453028275366}, "umap_x": {"value": 3.3716533}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6367476}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.051039202725878}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.924162993606952}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.191679226028807}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": -6.978785286802194}, "mds3": {"value": 12.08595744398724}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 28.039240706159934}}, "branch_attrs": {"mutations": {"nuc": ["C3365T", "G3567A", "G3955T", "C6128T", "G25266T", "T25639G", "G28913A"], "S": ["C1235F"]}, "labels": {"aa": "S: C1235F"}}}, {"name": "NODE_0000887", "node_attrs": {"div": 17, "num_date": {"value": 2020.7413070946836, "confidence": [2020.6939777365121, 2020.7581967213114]}}, "branch_attrs": {"mutations": {"nuc": ["G3431T", "G29081A"]}}, "children": [{"name": "COL/RSEC-00002B/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_x": {"value": -0.9757571199684176}, "umap_x": {"value": 4.388908}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3960354}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.9980818292556295}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.917931869658673}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.582634038047168}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": 2.522481192623802}, "mds3": {"value": 6.680012986416451}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1703777367692351}}, "branch_attrs": {"mutations": {"nuc": ["G25644T"]}}}, {"name": "COL/RSEC-00001A/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7581967213114, "confidence": [2020.7581967213114, 2020.7581967213114]}, "tsne_x": {"value": -0.9835073656251274}, "umap_x": {"value": 4.574938}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3492131}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.997514244562334}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.916044518469217}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.84520179834342}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": 1.6985771510869567}, "mds3": {"value": 6.256510773264821}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1715568586706851}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000888", "node_attrs": {"div": 13, "num_date": {"value": 2020.4801346057927, "confidence": [2020.26104291392, 2020.6617680833606]}}, "branch_attrs": {"mutations": {"nuc": ["C21846T", "A21993-", "G23012A", "G24410A", "A28272G"], "S": ["T95I", "Y144X", "E484K", "D950N", "*1274X"]}, "labels": {"aa": "S: T95I, Y144X, E484K, D950N, *1274X"}}, "children": [{"name": "NODE_0000889", "node_attrs": {"div": 32, "num_date": {"value": 2021.0807807676429, "confidence": [2020.9303004056303, 2021.1790706321278]}}, "branch_attrs": {"mutations": {"nuc": ["A3428G", "C4878T", "C6037T", "C10029T", "A11451G", "A13057T", "C17491T", "T19035C", "T19431C", "C20148T", "-21993C", "T21995A", "G22599A", "A23063T", "C23604A", "G26158-", "T26159-", "T26160-", "A26161-", "A26492T", "C27925A", "C28005T", "C28093T", "G28272T"], "S": ["X144S", "Y145N", "R346K", "N501Y", "P681H", "X1274*"]}, "labels": {"aa": "S: X144S, Y145N, R346K, N501Y, P681H, X1274*"}}, "children": [{"name": "Colombia/CO-CAU-UW21051340730/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.36301369863, "confidence": [2021.36301369863, 2021.36301369863]}, "tsne_x": {"value": -4.396064747961511}, "umap_x": {"value": 1.6563046}, "Nextstrain_clade": {"value": "21H (Mu)"}, "umap_y": {"value": -1.7106147}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.02176168294593}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.621"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.28689022385067}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.225413696489976}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": -34.35664601661604}, "mds3": {"value": 13.02574799309583}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 28.401849690013503}}, "branch_attrs": {"mutations": {"nuc": ["A1596G", "C5192T", "C17707T", "C21530G", "T21534A", "G21535T", "A21536C"]}}}, {"name": "COL/SEC-0366B/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_x": {"value": -4.39570408856341}, "umap_x": {"value": 1.6709287}, "Nextstrain_clade": {"value": "21H (Mu)"}, "umap_y": {"value": -1.7440195}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 66.45472990803326}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.621"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.28160817232472}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 14.072081732249451}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": -35.13572375854158}, "mds3": {"value": 9.773021419085444}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -2.249731920520994}}, "branch_attrs": {"mutations": {"nuc": ["G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "A4121G", "C7735T", "C18568T", "C25708T", "T28618A"]}}}]}, {"name": "NODE_0000890", "node_attrs": {"div": 30, "num_date": {"value": 2020.844687680794, "confidence": [2020.7518234292825, 2020.9114713397587]}}, "branch_attrs": {"mutations": {"nuc": ["G521T", "C2306T", "A4220G", "C5730T", "C6401T", "A10323G", "C10775T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "T12730G", "A13712G", "C16694T", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "T21992-", "T21994-", "C22033A", "T22882G", "G25244T", "T26767C", "A27721G", "A27897-", "A27898-", "A27899-", "T27900-", "T27901-", "T28887C", "G28975T"], "S": ["I68X", "H69-", "V70X", "X144-", "F157L", "N440K", "V1228L"]}, "labels": {"aa": "S: I68X, H69-, V70X, X144-, F157L, N440K, V1228L"}}, "children": [{"name": "COL/SEC-0173Q/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.0123287671233, "confidence": [2021.0123287671233, 2021.0123287671233]}, "tsne_x": {"value": -5.699562029331464}, "umap_x": {"value": 1.7765273}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8864919}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 15.289867564851782}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.625"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.555230510593685}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.043620736385584}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": -26.29082515704948}, "mds3": {"value": 17.575688321703474}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 9.655104964493754}}, "branch_attrs": {"mutations": {"nuc": ["A3039G", "C4093T", "C13536T"]}}}, {"name": "NODE_0000502", "node_attrs": {"div": 30, "num_date": {"value": 2020.8616580397938, "confidence": [2020.7576735346008, 2020.9144282153025]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/SEC-0203U/2020", "node_attrs": {"div": 37, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_x": {"value": -5.704043589897981}, "umap_x": {"value": 1.6644411}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7305299}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.89357273599113}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.625"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.54925356295992}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.76943297537292}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": -28.23603015891489}, "mds3": {"value": 19.894407976999123}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -5.7076559849284845}}, "branch_attrs": {"mutations": {"nuc": ["C794T", "C17746T", "C18486T", "C18747T", "C28695T", "C29284T", "C29743G"]}}}, {"name": "COL/SEC-0899O/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_x": {"value": -5.697414249436668}, "umap_x": {"value": 1.7198195}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7935004}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 34.07156811200667}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.625"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.551929699348644}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 18.858778956289548}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": 29.739680211234685}, "mds3": {"value": 10.602075257088728}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 1.913537088199744}}, "branch_attrs": {"mutations": {"nuc": ["C1063T", "T16363C", "G17334T"]}}}]}]}]}]}]}, {"name": "NODE_0000504", "node_attrs": {"div": 7, "num_date": {"value": 2020.3287474840301, "confidence": [2020.1585853971144, 2020.4723158155782]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2007212753/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5505464480875, "confidence": [2020.5505464480875, 2020.5505464480875]}, "tsne_x": {"value": -1.8802640830048056}, "umap_x": {"value": 5.820849}, "Nextstrain_clade": {"value": "20C"}, "umap_y": {"value": -1.7743245}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.6602213002959305}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.244578310321028}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.55244998676664}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 0.1348501762771389}, "mds3": {"value": 2.684300106761021}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 5.020075895379521}}, "branch_attrs": {"mutations": {"nuc": ["C2509T", "C6408T", "C13072T", "G21123T", "A26161T"]}}}, {"name": "NODE_0000505", "node_attrs": {"div": 7, "num_date": {"value": 2020.3619309146663, "confidence": [2020.158138734848, 2020.5232240437158]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NMINBRE-PB-WGS-215768/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.5232240437158, "confidence": [2020.5232240437158, 2020.5232240437158]}, "tsne_x": {"value": -2.5966917363942663}, "umap_x": {"value": 7.083564}, "Nextstrain_clade": {"value": "20C"}, "umap_y": {"value": -1.237091}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.621445389895873}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.826856948646457}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.814632241414445}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Mexico"}, "mds2": {"value": 1.6515862246457311}, "mds3": {"value": 1.8654487228205496}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.208036247642165}}, "branch_attrs": {"mutations": {"nuc": ["A10897G", "G22021A"], "S": ["M153I"]}, "labels": {"aa": "S: M153I"}}}, {"name": "NODE_0000506", "node_attrs": {"div": 7, "num_date": {"value": 2020.379901261812, "confidence": [2020.1576747179763, 2020.5663781453263]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000507", "node_attrs": {"div": 7, "num_date": {"value": 2020.4127212246851, "confidence": [2020.1556866232795, 2020.573468417]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000880", "node_attrs": {"div": 22, "num_date": {"value": 2021.0658376662934, "confidence": [2020.9543646076083, 2021.111315198604]}}, "branch_attrs": {"mutations": {"nuc": ["G376T", "A1180G", "C6730T", "C6936T", "C10029T", "C10726T", "C11514T", "C13957T", "C16375T", "T20748C", "T23042C", "C23604A", "C23709T", "T26767C", "A28271-", "G29711-", "C29719T"], "S": ["S494P", "P681H", "T716I"]}, "labels": {"aa": "S: S494P, P681H, T716I"}}, "children": [{"name": "USA/MA-Broad_CRSP-01306/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.127397260274, "confidence": [2021.127397260274, 2021.127397260274]}, "tsne_x": {"value": -4.727276888875226}, "umap_x": {"value": 2.3825831}, "Nextstrain_clade": {"value": "20C"}, "umap_y": {"value": -2.3712265}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.955114608011023}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.575"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -19.43431987224317}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.700097778599304}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Massachusetts"}, "mds2": {"value": -15.137350353947951}, "mds3": {"value": 15.488202196261623}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 0.0444198784827752}}, "branch_attrs": {"mutations": {"nuc": ["A6851C", "C9165T"]}}}, {"name": "USA/FL-CDC-STM-000021858/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.141095890411, "confidence": [2021.141095890411, 2021.141095890411]}, "tsne_x": {"value": -4.729361192651202}, "umap_x": {"value": 2.3329027}, "Nextstrain_clade": {"value": "20C"}, "umap_y": {"value": -2.299009}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.449407189128534}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.575"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -19.43601509705192}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.78329744752109}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Florida"}, "mds2": {"value": 24.40941658154204}, "mds3": {"value": 7.456155892824994}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -18.090530327915765}}, "branch_attrs": {"mutations": {"nuc": ["C6982T", "C18060T"]}}}]}, {"name": "NODE_0000870", "node_attrs": {"div": 14, "num_date": {"value": 2020.6391175330893, "confidence": [2020.376613686415, 2020.7822867066807]}}, "branch_attrs": {"mutations": {"nuc": ["G17014T", "G21600T", "G22018T", "T22917G", "C26681T", "A28272T", "C29362T"], "S": ["S13I", "W152C", "L452R"]}, "labels": {"aa": "S: S13I, W152C, L452R"}}, "children": [{"name": "USA/FL-CDC-FG-017674/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.2424657534248, "confidence": [2021.2424657534248, 2021.2424657534248]}, "tsne_x": {"value": -1.3685407832151804}, "umap_x": {"value": 2.5087368}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -2.4434578}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.1999567470256425}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.427"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.474679273095129}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.441904889953715}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Florida"}, "mds2": {"value": 4.449454129300652}, "mds3": {"value": 14.773210981889475}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -6.003074297908672}}, "branch_attrs": {"mutations": {"nuc": ["C2223T", "C4540T", "A9869G", "C11345T", "G13713A", "C16394T", "C27847T", "C29311T"]}}}, {"name": "NODE_0000871", "node_attrs": {"div": 21, "num_date": {"value": 2020.784186022003, "confidence": [2020.6161979569881, 2020.9075418103869]}}, "branch_attrs": {"mutations": {"nuc": ["C2395T", "T2597C", "C8947T", "C12100T", "A12878G", "T24349C", "G27890T"]}}, "children": [{"name": "NODE_0000875", "node_attrs": {"div": 22, "num_date": {"value": 2020.8196447835448, "confidence": [2020.6541787927133, 2020.9157863433222]}}, "branch_attrs": {"mutations": {"nuc": ["C21638T"], "S": ["P26S"]}, "labels": {"aa": "S: P26S"}}, "children": [{"name": "NZL/20CV0724/2020", "node_attrs": {"div": 28, "num_date": {"value": 2020.9795081967213, "confidence": [2020.9795081967213, 2020.9795081967213]}, "tsne_x": {"value": 1.1319960859191232}, "umap_x": {"value": 1.9958318}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -2.0150201}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 11.306617567111982}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.532464530600922}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.563400188856036}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Canterbury"}, "mds2": {"value": -25.751374094518106}, "mds3": {"value": 4.00066372382535}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 5.839066364111563}}, "branch_attrs": {"mutations": {"nuc": ["C119T", "C3045T", "C25703T", "T25999C", "G27261T", "T28010A"]}}}, {"name": "NODE_0000512", "node_attrs": {"div": 22, "num_date": {"value": 2020.8445701025544, "confidence": [2020.6546889107951, 2020.9189476370836]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0715/2020", "node_attrs": {"div": 29, "num_date": {"value": 2020.99043715847, "confidence": [2020.99043715847, 2020.99043715847]}, "tsne_x": {"value": 1.1346667343781829}, "umap_x": {"value": 1.8814038}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -1.9365692}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.728673256588186}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.53517652604383}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 27.91339621302797}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": -13.558872132547473}, "mds3": {"value": 19.211869683909008}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 3.674141725373425}}, "branch_attrs": {"mutations": {"nuc": ["G9526T", "A17232G", "A19476G", "G25183A", "A25315G", "A26739G", "A28173G"]}}}, {"name": "NODE_0000514", "node_attrs": {"div": 22, "num_date": {"value": 2020.8773558738242, "confidence": [2020.655839944061, 2020.9576402653847]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "TWN/CGMH-CGU-49/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.0561643835617, "confidence": [2021.0561643835617, 2021.0561643835617]}, "tsne_x": {"value": 1.1324048740567476}, "umap_x": {"value": 1.9391265}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -2.0244339}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.872682001806573}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.5338412175977}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.97308127308354}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Taiwan"}, "mds2": {"value": -11.105904658885196}, "mds3": {"value": 17.377588070252227}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -19.76278396484024}}, "branch_attrs": {"mutations": {"nuc": ["C15324T", "C18981G", "C25603T", "C25710T"]}}}, {"name": "USA/CA-CDC-STM-000005332/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0643835616438, "confidence": [2021.0643835616438, 2021.0643835616438]}, "tsne_x": {"value": 1.1311946346171202}, "umap_x": {"value": 2.086723}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -2.0858402}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.411275688266479}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.532452875411106}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.62580041662454}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": -9.756385751906135}, "mds3": {"value": 17.082884036580282}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -15.41219993466445}}, "branch_attrs": {"mutations": {"nuc": ["G7100A", "T24283C", "C28846T"]}}}]}]}]}, {"name": "NODE_0000517", "node_attrs": {"div": 21, "num_date": {"value": 2020.8094952612457, "confidence": [2020.6188842253619, 2020.9145278399699]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-FG-015220/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.231506849315, "confidence": [2021.231506849315, 2021.231506849315]}, "tsne_x": {"value": 1.1356077915756655}, "umap_x": {"value": 1.7865711}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -1.9060822}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.63579420490775}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.53505834622143}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 27.52895365757263}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": -15.831603067343902}, "mds3": {"value": 19.157204449820817}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -4.693927765312107}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "C8318A", "C9994T", "C11962T", "A26896T", "C27513T", "C27879T", "C29167T", "G29715T"]}}}, {"name": "NODE_0000873", "node_attrs": {"div": 23, "num_date": {"value": 2020.9029278644557, "confidence": [2020.7941298503524, 2020.941256830601]}}, "branch_attrs": {"mutations": {"nuc": ["G28191T", "G28975T"]}}, "children": [{"name": "USA/CA-CDPH-2000009708/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_x": {"value": 1.1293870325565385}, "umap_x": {"value": 2.2300234}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -2.192981}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.057786652444286}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.53057995974909}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.29227559126087}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 6.620838734940787}, "mds3": {"value": 16.61374341209584}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -10.079872347773358}}, "branch_attrs": {"mutations": {"nuc": ["T13114C"]}}}, {"name": "NODE_0000519", "node_attrs": {"div": 23, "num_date": {"value": 2020.937102065479, "confidence": [2020.788463256106, 2020.9819763862092]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NC-CDC-LC0021598/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_x": {"value": 1.1324831748574389}, "umap_x": {"value": 1.9455609}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -2.0153182}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.965036237556117}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.53241565541336}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 26.61062852450683}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "North Carolina"}, "mds2": {"value": 7.853726602306425}, "mds3": {"value": 18.601569979231048}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 12.767261529687376}}, "branch_attrs": {"mutations": {"nuc": ["A742C", "T18099C", "C21364T", "A29725G"]}}}, {"name": "USA/CA-CHLA-PLM40283940/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.0863013698631, "confidence": [2021.0863013698631, 2021.0863013698631]}, "tsne_x": {"value": 1.134099669118131}, "umap_x": {"value": 1.8585912}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "umap_y": {"value": -1.9521301}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.858357030096305}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.535005566918066}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 28.3962701244792}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": -7.031037253249687}, "mds3": {"value": 21.601049846375464}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -19.878302967256392}}, "branch_attrs": {"mutations": {"nuc": ["T10831A", "A19515G", "T22327A", "G25555T", "C27434T", "G28027C"]}}}]}]}]}]}]}]}, {"name": "NODE_0000892", "node_attrs": {"div": 18, "num_date": {"value": 2020.642592338119, "confidence": [2020.5127078722614, 2020.7503441339757]}}, "branch_attrs": {"mutations": {"nuc": ["G174T", "G5230T", "A10323G", "A21801C", "T22283-", "T22284-", "A22285-", "C22286-", "T22287-", "T22288-", "G22289-", "C22290-", "T22291-", "G22813T", "G23012A", "A23063T", "C23664T", "C25904T", "C26456T", "C28253T"], "S": ["D80A", "L241-", "L242-", "A243-", "K417N", "E484K", "N501Y", "A701V"]}, "labels": {"aa": "S: D80A, L241-, L242-, A243-, K417N, E484K, N501Y, A701V"}}, "children": [{"name": "NODE_0000893", "node_attrs": {"div": 23, "num_date": {"value": 2020.7576820283812, "confidence": [2020.6821413252985, 2020.8157466744956]}}, "branch_attrs": {"mutations": {"nuc": ["C8660T", "C8964T", "G11230T", "C14925T", "G22299T"], "S": ["R246I"]}, "labels": {"aa": "S: R246I"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1043/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.8237704918033, "confidence": [2020.8237704918033, 2020.8237704918033]}, "tsne_x": {"value": 5.142016873569222}, "umap_x": {"value": 1.3007385}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.982967}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.132160504106915}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.808724827132096}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.463268403590764}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -3.301913595133294}, "mds3": {"value": 11.314116835558767}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.505353879738946}}, "branch_attrs": {"mutations": {"nuc": ["C7979T", "G11417T"]}}}, {"name": "NODE_0000894", "node_attrs": {"div": 25, "num_date": {"value": 2020.8389927466758, "confidence": [2020.7603526606313, 2020.8705825108382]}}, "branch_attrs": {"mutations": {"nuc": ["C8655T", "T27504C"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7042-KRISP/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_x": {"value": 5.007776475428296}, "umap_x": {"value": 1.416004}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.1973336}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.78224087332864}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.778127346355689}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 31.991666273280536}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -4.064997493836056}, "mds3": {"value": 12.649081283129574}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -21.127865807835263}}, "branch_attrs": {"mutations": {"nuc": ["T8059C", "C10138T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-7036-KRISP/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_x": {"value": 5.044232846524455}, "umap_x": {"value": 1.4474955}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.257405}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.108760569346299}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.787065854730669}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 31.550092944098203}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.7552905765870689}, "mds3": {"value": 13.754025300201029}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -19.971024965614067}}, "branch_attrs": {"mutations": {"nuc": ["C6196T", "C17288T"]}}}]}]}, {"name": "NODE_0000895", "node_attrs": {"div": 19, "num_date": {"value": 2020.6805252893894, "confidence": [2020.5898053179208, 2020.8199475908295]}}, "branch_attrs": {"mutations": {"nuc": ["T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "A22206G"], "S": ["D215G"]}, "labels": {"aa": "S: D215G"}}, "children": [{"name": "NODE_0000524", "node_attrs": {"div": 19, "num_date": {"value": 2020.711155380581, "confidence": [2020.5947466216617, 2020.8320454754685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000897", "node_attrs": {"div": 20, "num_date": {"value": 2020.7853627368113, "confidence": [2020.7095279050543, 2020.8456284153006]}}, "branch_attrs": {"mutations": {"nuc": ["C6968T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1372/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.8674863387978, "confidence": [2020.8674863387978, 2020.8674863387978]}, "tsne_x": {"value": 5.746232439509907}, "umap_x": {"value": 1.2144852}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.82387024}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.502923969923351}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.911270428127008}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 26.54948880991524}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -1.7449272495035997}, "mds3": {"value": 8.659237093575246}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -19.666938003926504}}, "branch_attrs": {"mutations": {"nuc": ["G932T", "A28771T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-1334/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.8456284153006, "confidence": [2020.8456284153006, 2020.8456284153006]}, "tsne_x": {"value": 5.748905533914198}, "umap_x": {"value": 1.1977371}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.79663664}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 3.172341298913347}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.918583116453656}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 25.45137514280562}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -1.4977133066683035}, "mds3": {"value": 7.964457015041763}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -24.40218426517845}}, "branch_attrs": {"mutations": {"nuc": ["G16795T"]}}}]}, {"name": "NODE_0000526", "node_attrs": {"div": 19, "num_date": {"value": 2020.743516795123, "confidence": [2020.5943300668189, 2020.8646385188933]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000899", "node_attrs": {"div": 20, "num_date": {"value": 2020.7827693831741, "confidence": [2020.6424785173126, 2020.9015195562465]}}, "branch_attrs": {"mutations": {"nuc": ["C1263T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7844/2020", "node_attrs": {"div": 28, "num_date": {"value": 2020.9521857923498, "confidence": [2020.9521857923498, 2020.9521857923498]}, "tsne_x": {"value": 5.6696415701885945}, "umap_x": {"value": 1.4809899}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.3234276}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.247235651741681}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.55984228049375}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 33.17727795117518}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -5.063689905254819}, "mds3": {"value": 13.501641798249905}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.926594557975642}}, "branch_attrs": {"mutations": {"nuc": ["C936T", "G6533A", "A12603C", "A17553G", "A19361T", "C19884T", "G25567A", "C28312G"]}}}, {"name": "NODE_0000528", "node_attrs": {"div": 20, "num_date": {"value": 2020.8171849555426, "confidence": [2020.6430906556657, 2020.9245008856176]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0438/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_x": {"value": 5.668383665451727}, "umap_x": {"value": 1.4372675}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.2287058}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.87713309400698}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.68025442463701}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 32.891568963472054}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "New Zealand"}, "mds2": {"value": -2.0065269520782856}, "mds3": {"value": 10.918397842470895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -6.214471774833293}}, "branch_attrs": {"mutations": {"nuc": ["A5794C", "A6484C", "C16887T", "C18695T", "C21638T", "T24796C", "A28254C"], "S": ["P26S"]}, "labels": {"aa": "S: P26S"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-9655/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_x": {"value": 5.671656770981734}, "umap_x": {"value": 1.26902}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.96382487}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.126756338792433}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.80820072982696}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.25053781514724}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.6912556107655983}, "mds3": {"value": 9.938129584345274}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.525106956105663}}, "branch_attrs": {"mutations": {"nuc": ["G6421T", "A6679G", "C6843T", "C27612T", "C28265A"]}}}]}]}, {"name": "NODE_0000529", "node_attrs": {"div": 19, "num_date": {"value": 2020.7825492589072, "confidence": [2020.542806806963, 2020.948074021455]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000905", "node_attrs": {"div": 22, "num_date": {"value": 2021.008828177331, "confidence": [2020.7461668614706, 2021.1596095587556]}}, "branch_attrs": {"mutations": {"nuc": ["T4213C", "C11812A", "G21641T"], "S": ["A27S"]}, "labels": {"aa": "S: A27S"}}, "children": [{"name": "NZL/21MV0452/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.3821917808218, "confidence": [2021.3821917808218, 2021.3821917808218]}, "tsne_x": {"value": 5.762414657041697}, "umap_x": {"value": 1.4353842}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.2255963}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.81969989652016}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.580576697542252}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 32.47742408139621}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "New Zealand"}, "mds2": {"value": -3.596423678547883}, "mds3": {"value": 12.021327987724575}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -6.198705768766837}}, "branch_attrs": {"mutations": {"nuc": ["C15925T", "C17474T", "T17970C", "A23764T", "T28642C"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-B557/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_x": {"value": 5.87491427718555}, "umap_x": {"value": 1.5049804}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.3472689}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 14.212063664993392}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.306411391278662}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 35.2739348235599}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": 1.4048815736941966}, "mds3": {"value": 17.43483223133565}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -17.661454803392957}}, "branch_attrs": {"mutations": {"nuc": ["A518-", "T519-", "G520-", "G14055T", "C14178T", "C14585T", "A18682G", "T23338C", "C23635G", "G25012T", "C29541T"], "S": ["E1150D"]}, "labels": {"aa": "S: E1150D"}}}]}, {"name": "NODE_0000531", "node_attrs": {"div": 19, "num_date": {"value": 2020.8181274013496, "confidence": [2020.5430508539541, 2020.94934065261]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000533", "node_attrs": {"div": 19, "num_date": {"value": 2020.8588523823844, "confidence": [2020.5400678695908, 2020.94998788812]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0124/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.0479452054794, "confidence": [2021.0479452054794, 2021.0479452054794]}, "tsne_x": {"value": 5.583770297344542}, "umap_x": {"value": 1.391451}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.1587006}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.8636391359072775}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.726084587250456}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 32.419957025658945}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "New Zealand"}, "mds2": {"value": 1.1161843002217962}, "mds3": {"value": 12.233565760879657}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -6.185457697156401}}, "branch_attrs": {"mutations": {"nuc": ["A3647G", "C5310T", "C9142T", "C19524T", "C20148T", "C25820T", "C26542T", "G28027T"]}}}, {"name": "NZL/21MV0197/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.2123287671234, "confidence": [2021.2123287671234, 2021.2123287671234]}, "tsne_x": {"value": 5.701068366922354}, "umap_x": {"value": 1.2962829}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.9829167}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.538153730998883}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.841608406524566}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.25145641277262}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.06781138419449}, "mds3": {"value": 10.014168106407682}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 11.114767267208189}}, "branch_attrs": {"mutations": {"nuc": ["C4897T", "C5512T", "C6471T", "C17999T", "C18657T", "A28254C"]}}}]}, {"name": "NODE_0000904", "node_attrs": {"div": 20, "num_date": {"value": 2020.9181301190513, "confidence": [2020.7817540470405, 2020.9727209609825]}}, "branch_attrs": {"mutations": {"nuc": ["G6802T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-A820/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.0561643835617, "confidence": [2021.0561643835617, 2021.0561643835617]}, "tsne_x": {"value": 5.731784763420324}, "umap_x": {"value": 1.208877}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.79352576}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.808838112183272}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.913293041740603}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.611528914544195}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.7009697945292231}, "mds3": {"value": 8.308564487650052}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -18.29336896384392}}, "branch_attrs": {"mutations": {"nuc": ["G29140T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-8557/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.974043715847, "confidence": [2020.974043715847, 2020.974043715847]}, "tsne_x": {"value": 5.725203680161358}, "umap_x": {"value": 1.2138519}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.79265237}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.109518785669582}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.905273656238895}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.46842001430436}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.3543496324586089}, "mds3": {"value": 6.863754790308634}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.367141581114293}}, "branch_attrs": {"mutations": {"nuc": ["T9580C", "G25972C"]}}}]}]}]}]}]}, {"name": "NODE_0000906", "node_attrs": {"div": 20, "num_date": {"value": 2020.7280818325742, "confidence": [2020.6401712457516, 2020.8285191859586]}}, "branch_attrs": {"mutations": {"nuc": ["A2692T"]}}, "children": [{"name": "NODE_0000908", "node_attrs": {"div": 21, "num_date": {"value": 2020.8177294647785, "confidence": [2020.6721254726779, 2020.933897759713]}}, "branch_attrs": {"mutations": {"nuc": ["C5100T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B231/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.1493150684933, "confidence": [2021.1493150684933, 2021.1493150684933]}, "tsne_x": {"value": 6.349737567946181}, "umap_x": {"value": 1.5179751}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.372638}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.488053776196156}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.732498759180666}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 35.22525992806423}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -7.179736392992952}, "mds3": {"value": 13.731233726630316}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -18.40742345037632}}, "branch_attrs": {"mutations": {"nuc": ["C8733T", "G10106A", "G14772T", "C22088T", "T22099C", "G25471T", "T27152C", "T27900C", "T27901A", "T28009C"], "S": ["L176F"]}, "labels": {"aa": "S: L176F"}}}, {"name": "NZL/21MV0006/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.0698630136985, "confidence": [2021.0698630136985, 2021.0698630136985]}, "tsne_x": {"value": 5.816162830541602}, "umap_x": {"value": 1.2509046}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.9177122}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.350852391116653}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.964123910509963}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.025760880583483}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "New Zealand"}, "mds2": {"value": -2.20225176637694}, "mds3": {"value": 9.87194192179607}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 12.03943183114422}}, "branch_attrs": {"mutations": {"nuc": ["C17626T", "G27870T", "C29358T"]}}}]}, {"name": "NODE_0000537", "node_attrs": {"div": 20, "num_date": {"value": 2020.7659548018798, "confidence": [2020.6375879044977, 2020.8529422730537]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000538", "node_attrs": {"div": 20, "num_date": {"value": 2020.7853471145354, "confidence": [2020.6426767768135, 2020.8732309730049]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8717/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_x": {"value": 5.786389804178277}, "umap_x": {"value": 1.2653494}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.90136844}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.158954011364713}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.977513528461827}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 28.35193864087368}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -1.385582329235607}, "mds3": {"value": 8.133560615759498}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.389803713556589}}, "branch_attrs": {"mutations": {"nuc": ["C11195T", "G28086T", "C29421T", "T29842C"]}}}, {"name": "South_Africa/UW20120326265/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.922131147541, "confidence": [2020.922131147541, 2020.922131147541]}, "tsne_x": {"value": 5.77175589679737}, "umap_x": {"value": 1.2434775}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.76947284}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.757313241165658}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.977650946523989}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 25.678337117043537}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.7342240447295953}, "mds3": {"value": 8.652240467097455}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 28.21374318826868}}, "branch_attrs": {"mutations": {"nuc": ["C19524T", "G22335T", "C25046T"], "S": ["W258L", "P1162S"]}, "labels": {"aa": "S: W258L, P1162S"}}}]}, {"name": "NODE_0000911", "node_attrs": {"div": 21, "num_date": {"value": 2020.8178501619427, "confidence": [2020.6947559416042, 2020.8995914341897]}}, "branch_attrs": {"mutations": {"nuc": ["T27193C"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7227/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.9193989071039, "confidence": [2020.9193989071039, 2020.9193989071039]}, "tsne_x": {"value": 5.793300121432487}, "umap_x": {"value": 1.1976041}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.81649435}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.157155892211913}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.969985451773208}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 27.81209019773946}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -1.9571819651208169}, "mds3": {"value": 8.87741420089317}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.358490481628309}}, "branch_attrs": {"mutations": {"nuc": ["C27131T", "A28254C"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-B010/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.0342465753424, "confidence": [2021.0342465753424, 2021.0342465753424]}, "tsne_x": {"value": 5.898663136740121}, "umap_x": {"value": 1.4186308}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.216861}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.164705466884825}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -15.916012911738056}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 32.13855046386264}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -5.751915491872137}, "mds3": {"value": 12.223942045250096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.382015799370285}}, "branch_attrs": {"mutations": {"nuc": ["T5674C", "C9907T", "C22987T", "C23707T", "C24865T", "T28693C"]}}}]}]}, {"name": "NODE_0000912", "node_attrs": {"div": 21, "num_date": {"value": 2020.7683756616102, "confidence": [2020.706534775863, 2020.8348269414848]}}, "branch_attrs": {"mutations": {"nuc": ["C21614T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}, "children": [{"name": "NODE_0000923", "node_attrs": {"div": 22, "num_date": {"value": 2020.810004124093, "confidence": [2020.7443652487502, 2020.8456284153006]}}, "branch_attrs": {"mutations": {"nuc": ["C26985T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1112/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.8456284153006, "confidence": [2020.8456284153006, 2020.8456284153006]}, "tsne_x": {"value": 5.830863193513709}, "umap_x": {"value": 1.2365818}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.8524524}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.678751134764577}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.05322443732749}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 27.40383681404884}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.6142235079935986}, "mds3": {"value": 11.186840243565248}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -12.445355823839298}}, "branch_attrs": {"mutations": {"nuc": ["-22283T", "-22284T", "-22285A", "-22286C", "-22287T", "-22288T", "-22289G", "-22290C", "-22291T", "G28392T", "G29402T"], "S": ["-241L", "-242L", "-243A"]}, "labels": {"aa": "S: -241L, -242L, -243A"}}}, {"name": "NODE_0000924", "node_attrs": {"div": 25, "num_date": {"value": 2021.0150684931507, "confidence": [2020.9815781019345, 2021.0150684931507]}}, "branch_attrs": {"mutations": {"nuc": ["G4975T", "A11462G", "G28300T"]}}, "children": [{"name": "MYS/NCOV24063/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.2205479452055, "confidence": [2021.2205479452055, 2021.2205479452055]}, "tsne_x": {"value": 5.907503519262484}, "umap_x": {"value": 1.4547129}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.2581859}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.767314713619158}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.171004245122838}, "country": {"value": "Malaysia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 33.89706105047718}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Malaysia"}, "mds2": {"value": -2.1268428289753194}, "mds3": {"value": 12.322664222771492}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 0.0845634420416671}}, "branch_attrs": {"mutations": {"nuc": ["A10353G", "G25606T", "C27619T"]}}}, {"name": "NZL/21CV0061/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0150684931507, "confidence": [2021.0150684931507, 2021.0150684931507]}, "tsne_x": {"value": 5.845373212259181}, "umap_x": {"value": 1.2711569}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.9600899}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.839236446050338}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.059474356045083}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.53869592408052}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Auckland"}, "mds2": {"value": -1.5621148370249256}, "mds3": {"value": 9.13820029477582}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -6.190286585248261}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0064/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0150684931507, "confidence": [2021.0150684931507, 2021.0150684931507]}, "tsne_x": {"value": 5.850184851346747}, "umap_x": {"value": 1.2721231}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.0130469}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.83904892665085}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.059974375016605}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.493557761160822}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Auckland"}, "mds2": {"value": -1.735832706078604}, "mds3": {"value": 9.626571987359812}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -6.189995616385328}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000544", "node_attrs": {"div": 21, "num_date": {"value": 2020.8054496576847, "confidence": [2020.6895235169968, 2020.9136734112296]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8999/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.99043715847, "confidence": [2020.99043715847, 2020.99043715847]}, "tsne_x": {"value": 5.834270952524999}, "umap_x": {"value": 1.2095996}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.8083593}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.686572726245691}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.035266541687502}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.04716314751987}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -6.599702239491337}, "mds3": {"value": 10.145816292311022}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -9.98360422101078}}, "branch_attrs": {"mutations": {"nuc": ["G20578T", "C25731T", "T26442C"]}}}, {"name": "NODE_0000545", "node_attrs": {"div": 21, "num_date": {"value": 2020.8399131870915, "confidence": [2020.694166486033, 2020.9117666960892]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000918", "node_attrs": {"div": 22, "num_date": {"value": 2020.8763163780827, "confidence": [2020.7636136450776, 2020.9361057760511]}}, "branch_attrs": {"mutations": {"nuc": ["C26645T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8492/2020", "node_attrs": {"div": 28, "num_date": {"value": 2020.9795081967213, "confidence": [2020.9795081967213, 2020.9795081967213]}, "tsne_x": {"value": 5.923553957326237}, "umap_x": {"value": 1.469836}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.2963246}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.3343968576356974}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.155940552003578}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 33.86996462702343}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.2758840097208866}, "mds3": {"value": 12.41554158881516}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -12.763230747927643}}, "branch_attrs": {"mutations": {"nuc": ["G61T", "C6726T", "G17064T", "G22014T", "G22706T", "C25350T"], "S": ["S151I", "V382L", "P1263L"]}, "labels": {"aa": "S: S151I, V382L, P1263L"}}}, {"name": "NODE_0000547", "node_attrs": {"div": 22, "num_date": {"value": 2020.9383168477123, "confidence": [2020.8130285205768, 2020.9786901932705]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-9842/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_x": {"value": 5.837762178436499}, "umap_x": {"value": 1.2434499}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.929491}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.890067597331859}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.038695110875302}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.32049955883984}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -1.462276076486476}, "mds3": {"value": 9.362048670897694}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -18.75419971180353}}, "branch_attrs": {"mutations": {"nuc": ["G16402T", "C29679T"]}}}, {"name": "NODE_0000548", "node_attrs": {"div": 22, "num_date": {"value": 2020.9918645222538, "confidence": [2020.8767837250127, 2021.0221746948032]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MWI/MLW001032/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.0506849315068, "confidence": [2021.0506849315068, 2021.0506849315068]}, "tsne_x": {"value": 5.815528461794195}, "umap_x": {"value": 1.2187744}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.82481265}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.8164097497743583}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.0138756285626}, "country": {"value": "Malawi"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 27.02242203561752}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Malawi"}, "mds2": {"value": -0.5800204417118914}, "mds3": {"value": 9.686555855181242}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 11.110657104190633}}, "branch_attrs": {"mutations": {"nuc": ["G25290T", "T27582C"], "S": ["C1243F"]}, "labels": {"aa": "S: C1243F"}}}, {"name": "NODE_0000549", "node_attrs": {"div": 22, "num_date": {"value": 2021.0201381081197, "confidence": [2020.886704627154, 2021.0698630136985]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B441/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.2753424657535, "confidence": [2021.2753424657535, 2021.2753424657535]}, "tsne_x": {"value": 5.831666128857612}, "umap_x": {"value": 1.3067646}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.9722373}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.136251714536051}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.047553032898847}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.64354883303942}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.4679912137491697}, "mds3": {"value": 10.603489278081591}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.463916955463617}}, "branch_attrs": {"mutations": {"nuc": ["T28251G", "A28254C", "G29405C"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-A755/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0698630136985, "confidence": [2021.0698630136985, 2021.0698630136985]}, "tsne_x": {"value": 5.82459345425159}, "umap_x": {"value": 1.2555249}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.8865624}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.253663303999479}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.02760736394295}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 28.13352856921219}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.9473346259968356}, "mds3": {"value": 8.05742028100698}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.41739918537796}}, "branch_attrs": {"mutations": {"nuc": ["C19264T"]}}}]}]}]}]}, {"name": "NODE_0000550", "node_attrs": {"div": 21, "num_date": {"value": 2020.868193141819, "confidence": [2020.6526331605032, 2020.9575863959928]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000932", "node_attrs": {"div": 22, "num_date": {"value": 2020.9408977834191, "confidence": [2020.7773727517072, 2021.0511389681621]}}, "branch_attrs": {"mutations": {"nuc": ["C26882T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B249/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_x": {"value": 5.834034583227769}, "umap_x": {"value": 1.2786157}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.95703447}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.142862427606149}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.049118371446237}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.532538919481347}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.3762835878201207}, "mds3": {"value": 8.875032964771835}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.473816930302492}}, "branch_attrs": {"mutations": {"nuc": ["C6813T", "C8752T", "C24844T"]}}}, {"name": "ZAF/NHLS-UCT-GS-BM58/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0808219178082, "confidence": [2021.0808219178082, 2021.0808219178082]}, "tsne_x": {"value": 5.851562940525944}, "umap_x": {"value": 1.2677121}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.95892656}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.081725733611743}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.04620909406353}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.67138810355551}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": -1.480102287612207}, "mds3": {"value": 9.938632246915278}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 2.2506548003573617}}, "branch_attrs": {"mutations": {"nuc": ["T7324C", "C21587T", "C23230T"], "S": ["P9S"]}, "labels": {"aa": "S: P9S"}}}]}, {"name": "NODE_0000552", "node_attrs": {"div": 21, "num_date": {"value": 2020.9025340876879, "confidence": [2020.6533885026363, 2020.961317077273]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8540/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.9822404371585, "confidence": [2020.9822404371585, 2020.9822404371585]}, "tsne_x": {"value": 5.817119613942375}, "umap_x": {"value": 1.2241783}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.8166676}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.896133702365068}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.023560628327687}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 28.009680115457915}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.7538236055293482}, "mds3": {"value": 7.675867020666153}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -18.73485431031925}}, "branch_attrs": {"mutations": {"nuc": ["C15026T", "C21859T"]}}}, {"name": "NODE_0000553", "node_attrs": {"div": 21, "num_date": {"value": 2020.9385303590175, "confidence": [2020.6509325542077, 2021.076626688653]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000916", "node_attrs": {"div": 22, "num_date": {"value": 2021.0197401774244, "confidence": [2020.8637027334016, 2021.142127836854]}}, "branch_attrs": {"mutations": {"nuc": ["G25784T"]}}, "children": [{"name": "KEN/CBRD75/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.2123287671234, "confidence": [2021.2123287671234, 2021.2123287671234]}, "tsne_x": {"value": 5.910218986174557}, "umap_x": {"value": 1.2395635}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.88848114}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 12.030072120403815}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.095900784072025}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.58944920643061}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Kenya"}, "mds2": {"value": 3.524432980673318}, "mds3": {"value": 3.581946694293144}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -5.119961025864616}}, "branch_attrs": {"mutations": {"nuc": ["T14408A", "C15857T", "C22713T", "G26152T", "C29200T"], "S": ["P384L"]}, "labels": {"aa": "S: P384L"}}}, {"name": "NODE_0000917", "node_attrs": {"div": 23, "num_date": {"value": 2021.1273205647387, "confidence": [2021.0419463419182, 2021.1657534246576]}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}, "children": [{"name": "ZAF/NHLS-UCT-GS-B971/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.3958904109588, "confidence": [2021.3958904109588, 2021.3958904109588]}, "tsne_x": {"value": 5.838563318548973}, "umap_x": {"value": 1.3087025}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.9742525}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.748042759768003}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.05817528972314}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.573380602343548}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": -4.3539980658352055}, "mds3": {"value": 8.176569745643443}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 2.7889920813763096}}, "branch_attrs": {"mutations": {"nuc": ["C2644T", "C8991T", "C28320T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-B229/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.1657534246576, "confidence": [2021.1657534246576, 2021.1657534246576]}, "tsne_x": {"value": 5.836476282543301}, "umap_x": {"value": 1.2795821}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.92683065}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.992101327989074}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.031684329759084}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 27.206946814738185}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.9378677070658707}, "mds3": {"value": 12.931396779271791}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -18.786500345459103}}, "branch_attrs": {"mutations": {"nuc": ["G29402T"]}}}]}]}, {"name": "NODE_0000556", "node_attrs": {"div": 21, "num_date": {"value": 2020.9420197719492, "confidence": [2020.6551564709478, 2021.0846665208535]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000557", "node_attrs": {"div": 21, "num_date": {"value": 2020.9590045801438, "confidence": [2020.6557199300423, 2021.0869433257037]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B182/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_x": {"value": 5.953593952749106}, "umap_x": {"value": 1.3447121}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.07076}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.032990898564387}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.16236217368479}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.398983056484425}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -10.661559333086304}, "mds3": {"value": 10.12469858780343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -17.253126691134927}}, "branch_attrs": {"mutations": {"nuc": ["A3636G", "G4399T", "C13405T", "C16523T", "A17376C", "G24620T", "G25537A"], "S": ["A1020S"]}, "labels": {"aa": "S: A1020S"}}}, {"name": "NODE_0000927", "node_attrs": {"div": 27, "num_date": {"value": 2021.1415865453582, "confidence": [2021.0796098993796, 2021.1969492956268]}}, "branch_attrs": {"mutations": {"nuc": ["C6402T", "T7624C", "A8052G", "G10396T", "C10615T", "A16687G"]}}, "children": [{"name": "BGD/ideSHi-078/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.204109589041, "confidence": [2021.204109589041, 2021.204109589041]}, "tsne_x": {"value": 5.830384844875984}, "umap_x": {"value": 1.4720017}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.2712109}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 58.35827960621932}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.505053255394326}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 28.61517855131045}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Dhaka"}, "mds2": {"value": -6.362185816436754}, "mds3": {"value": 18.061751305340696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -3.5984452928442097}}, "branch_attrs": {"mutations": {"nuc": ["C5812T", "C21762T", "A28254C"], "S": ["A67V"]}, "labels": {"aa": "S: A67V"}}}, {"name": "NODE_0000559", "node_attrs": {"div": 27, "num_date": {"value": 2021.1694737027594, "confidence": [2021.097215846458, 2021.2349178949667]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/342286680/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.4616438356165, "confidence": [2021.4616438356165, 2021.4616438356165]}, "tsne_x": {"value": 5.82223868451482}, "umap_x": {"value": 1.5229306}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.3710195}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.498779487738624}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.69736402048054}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 37.59851535072111}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Bahrain"}, "mds2": {"value": -1.0963810381981756}, "mds3": {"value": 17.023899171344443}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -14.653629135227089}}, "branch_attrs": {"mutations": {"nuc": ["C7182T", "C14120T", "G21238A", "C21727T", "C21767T", "C27741T"], "S": ["H69Y"]}, "labels": {"aa": "S: H69Y"}}}, {"name": "NODE_0000929", "node_attrs": {"div": 28, "num_date": {"value": 2021.2443964770368, "confidence": [2021.195976571416, 2021.2623100237001]}}, "branch_attrs": {"mutations": {"nuc": ["C25603T"]}}, "children": [{"name": "BGD/ideSHi-TR-1069/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.2671232876712, "confidence": [2021.2671232876712, 2021.2671232876712]}, "tsne_x": {"value": 5.825611407887353}, "umap_x": {"value": 1.3340166}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.084141}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 58.32090679520608}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.38964341954196}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 28.59830958987272}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Dhaka"}, "mds2": {"value": -2.201787064764146}, "mds3": {"value": 16.400830565995406}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -3.631889282598827}}, "branch_attrs": {"mutations": {}}}, {"name": "BGD/ideSHi-IR-123/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.2643835616439, "confidence": [2021.2643835616439, 2021.2643835616439]}, "tsne_x": {"value": 5.826210867465728}, "umap_x": {"value": 1.3446635}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.0267367}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 63.88993552894041}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.475091113205593}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 22.487198026390026}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Dhaka"}, "mds2": {"value": -11.448505847419003}, "mds3": {"value": 16.595356392030897}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -1.849344882416792}}, "branch_attrs": {"mutations": {"nuc": ["C2197T"]}}}]}]}]}]}, {"name": "NODE_0000933", "node_attrs": {"div": 22, "num_date": {"value": 2021.0329289606166, "confidence": [2020.8394649806457, 2021.172720305399]}}, "branch_attrs": {"mutations": {"nuc": ["C28310T"]}}, "children": [{"name": "KEN/C87662/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_x": {"value": 5.911235048230499}, "umap_x": {"value": 1.2695001}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.0726447}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.2743446592307706}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.100560629533962}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.18429586197785}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Kenya"}, "mds2": {"value": -4.052395889722295}, "mds3": {"value": 11.484220561594212}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 1.0027355508401423}}, "branch_attrs": {"mutations": {"nuc": ["C6539T", "C10186T", "T17094C", "C25553T", "G28655T"]}}}, {"name": "NODE_0000562", "node_attrs": {"div": 22, "num_date": {"value": 2021.0862509540289, "confidence": [2020.817030645965, 2021.1789626974999]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C88566/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.2232876712328, "confidence": [2021.2232876712328, 2021.2232876712328]}, "tsne_x": {"value": 5.860194430274336}, "umap_x": {"value": 1.2384218}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.8894243}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 11.711263810427596}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.056136147836593}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.223372898005067}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Kenya"}, "mds2": {"value": 0.9947800172620824}, "mds3": {"value": 9.01774441767806}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -5.3800048694408815}}, "branch_attrs": {"mutations": {"nuc": ["C745T", "T21715C", "A28281G"]}}}, {"name": "NODE_0000563", "node_attrs": {"div": 22, "num_date": {"value": 2021.124440648754, "confidence": [2020.8176632227598, 2021.1903378014842]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "TZA/KIDH-02B10/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.272602739726, "confidence": [2021.272602739726, 2021.272602739726]}, "tsne_x": {"value": 5.814515044357029}, "umap_x": {"value": 1.2299563}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -0.80057853}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 10.905778087212836}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.01794647404764}, "country": {"value": "Tanzania"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 24.63025042454728}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Tanzania"}, "mds2": {"value": -0.3807290970432946}, "mds3": {"value": 7.597979875116418}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 2.527076783426159}}, "branch_attrs": {"mutations": {"nuc": ["G5572T"]}}}, {"name": "NODE_0000564", "node_attrs": {"div": 22, "num_date": {"value": 2021.1428497541383, "confidence": [2020.8191848400947, 2021.2037495178638]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C96439/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.3602739726027, "confidence": [2021.3602739726027, 2021.3602739726027]}, "tsne_x": {"value": 5.89389319897211}, "umap_x": {"value": 1.2861235}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.0018325}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.384831299429608}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.076302941089025}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 29.37729504838965}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "Kenya"}, "mds2": {"value": 1.7618654331485677}, "mds3": {"value": 13.554871763081854}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 3.0552107291592554}}, "branch_attrs": {"mutations": {"nuc": ["C5907T", "C15579T", "C25469T", "G25720T", "A28254C"]}}}, {"name": "NODE_0000935", "node_attrs": {"div": 31, "num_date": {"value": 2021.341095890411, "confidence": [2021.3156777774943, 2021.341095890411]}}, "branch_attrs": {"mutations": {"nuc": ["C4276T", "C13426T", "G14055T", "A22474G", "G25690T", "G26951T", "C26954T", "C27002T", "G28899A"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B741/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_x": {"value": 6.243352776954217}, "umap_x": {"value": 1.5156171}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.3624811}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.053021705481963}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.20750293387023}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 37.275889984374444}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.7297065027668262}, "mds3": {"value": 13.974536584751382}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": 1.858568691792707}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GS-B832/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_x": {"value": 6.233864678009671}, "umap_x": {"value": 1.526222}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "umap_y": {"value": -1.3746319}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.100709076602643}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "tsne_y": {"value": -16.208452893007536}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 36.05637827267854}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "division": {"value": "South Africa"}, "mds2": {"value": -1.5713384155024148}, "mds3": {"value": 14.178379121828913}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds_label_for_Nextstrain_clade": {"value": "6"}, "pca2": {"value": -11.63461114684772}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000569", "node_attrs": {"div": 4, "num_date": {"value": 2020.0254448360186, "confidence": [2019.9921593415036, 2020.0708804275027]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000581", "node_attrs": {"div": 5, "num_date": {"value": 2020.233158249645, "confidence": [2020.108730430982, 2020.470193623041]}}, "branch_attrs": {"mutations": {"nuc": ["C28854T"]}}, "children": [{"name": "NODE_0000582", "node_attrs": {"div": 14, "num_date": {"value": 2020.665246425535, "confidence": [2020.5811042060725, 2020.7551710380017]}}, "branch_attrs": {"mutations": {"nuc": ["C6312T", "C6968T", "C8637T", "A10124G", "C17518T", "C21516T", "C21622A", "C23664T", "A28133T"], "S": ["A701V"]}, "labels": {"aa": "S: A701V"}}, "children": [{"name": "NZL/21CV0106/2021", "node_attrs": {"div": 19, "num_date": {"value": 2021.0342465753424, "confidence": [2021.0342465753424, 2021.0342465753424]}, "tsne_x": {"value": -5.469566689257411}, "umap_x": {"value": 3.3892736}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6440656}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.8335351310648393}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.524"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.78320983795654}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.181021914953952}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": -13.06208815415068}, "mds3": {"value": -0.2086643900484833}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.2097646544371596}}, "branch_attrs": {"mutations": {"nuc": ["C6730T", "G11521T", "G16168T", "G18027T", "C20736T"]}}}, {"name": "MYS/M_N13162/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_x": {"value": -5.466966660814165}, "umap_x": {"value": 3.7321424}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6015272}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.205979317925248}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.524"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.766073674982653}, "country": {"value": "Malaysia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.363369659288946}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Malaysia"}, "mds2": {"value": 12.714630097840484}, "mds3": {"value": 1.2537375812029534}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.1707395498423065}}, "branch_attrs": {"mutations": {"nuc": ["C5869T", "C21365T", "G29751T"]}}}]}, {"name": "NODE_0000583", "node_attrs": {"div": 6, "num_date": {"value": 2020.3241114097218, "confidence": [2020.1372049247143, 2020.5180878283625]}}, "branch_attrs": {"mutations": {"nuc": ["C21846T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}, "children": [{"name": "USA/WA-CDC-LC0105139/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.527397260274, "confidence": [2021.527397260274, 2021.527397260274]}, "tsne_x": {"value": -4.8636210073268}, "umap_x": {"value": 1.6256104}, "Nextstrain_clade": {"value": "recombinant"}, "umap_y": {"value": -1.6722205}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.367850726026857}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "XB"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "XB"}, "tsne_y": {"value": -18.062755925761568}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.042879416830967}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Washington"}, "mds2": {"value": -33.826239867341386}, "mds3": {"value": 22.817499598765203}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 10.48058474010035}}, "branch_attrs": {"mutations": {"nuc": ["T577C", "A1255G", "C3688T", "C3884T", "G3977A", "C6633T", "A7142G", "A9614G", "C9693T", "A9754C", "C9857T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "C15026T", "G15451A", "C16466T", "G19086T", "T20777C", "C21057T", "T21615G", "A22036C", "T22882A", "C23604A", "C23625T", "C23638T", "T23765G", "C24378T", "T24406G", "C24442T", "C24642T", "G26158-", "T26159-", "T26160-", "A26161-", "C26222T", "C27389T", "C27769T", "G28048A", "A28271-", "A28330G", "A28910T", "G29474T"], "S": ["L18R", "R158S", "N440K", "P681H", "A688V", "S735A", "S939F", "T1027I"]}, "labels": {"aa": "S: L18R, R158S, N440K, P681H, A688V, S735A, S939F, T1027I"}}}, {"name": "Lebanon/QIB-24/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0123287671233, "confidence": [2021.0123287671233, 2021.0123287671233]}, "tsne_x": {"value": -4.596257408760282}, "umap_x": {"value": 2.4913821}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5150495}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.501348484247598}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.398"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.74913365543468}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.10649752532598}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Lebanon"}, "mds2": {"value": -23.610325736876383}, "mds3": {"value": 3.6538948317133912}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 6.055351024654475}}, "branch_attrs": {"mutations": {"nuc": ["C2245T", "G2305T", "G4136A", "G4300T", "G6266A", "G6443T", "C6445T", "C11224T", "C11747T", "C12295A", "G19525A", "C20178T", "C21658T", "G23608T", "G24193A", "G27670T", "C29077T"]}}}]}]}, {"name": "NODE_0000573", "node_attrs": {"div": 4, "num_date": {"value": 2020.0343698469899, "confidence": [2020.015689254396, 2020.075053310014]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000570", "node_attrs": {"div": 5, "num_date": {"value": 2020.1243770127776, "confidence": [2020.0380745108082, 2020.2047434568185]}}, "branch_attrs": {"mutations": {"nuc": ["C29353T"]}}, "children": [{"name": "AUS/VIC801/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_x": {"value": -5.772260385762217}, "umap_x": {"value": 6.817007}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.4742671}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 14.035979431770668}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.12906449737867}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.025143759524116}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 3.7095481807372175}, "mds3": {"value": 0.614225644620963}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.60031432814178}}, "branch_attrs": {"mutations": {"nuc": ["G1574T", "T7438C", "A26864G", "G29751T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-1009/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8319672131147, "confidence": [2020.8319672131147, 2020.8319672131147]}, "tsne_x": {"value": -6.531162530275121}, "umap_x": {"value": 3.9537854}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4941685}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.9885225570064975}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.798084933057917}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.4141001282752255}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": -16.042557123066622}, "mds3": {"value": -1.135657927431301}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.550494317442253}}, "branch_attrs": {"mutations": {"nuc": ["G3152A", "C4113T", "G4255A", "G4510T", "C5884T", "C6983T", "C8655T", "C11308T", "C13019T", "A22155G", "C23086T", "G28044T"], "S": ["D198G"]}, "labels": {"aa": "S: D198G"}}}]}, {"name": "NODE_0000575", "node_attrs": {"div": 4, "num_date": {"value": 2020.0498622946322, "confidence": [2020.0287641492625, 2020.0768428604792]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000430", "node_attrs": {"div": 5, "num_date": {"value": 2020.2198682459532, "confidence": [2020.104439719233, 2020.6718079826894]}}, "branch_attrs": {"mutations": {"nuc": ["G29742T"]}}, "children": [{"name": "NODE_0000431", "node_attrs": {"div": 7, "num_date": {"value": 2020.6706694686457, "confidence": [2020.4720654565622, 2020.7927097547872]}}, "branch_attrs": {"mutations": {"nuc": ["T22020C", "A28973C"], "S": ["M153T"]}, "labels": {"aa": "S: M153T"}}, "children": [{"name": "KEN/C65880/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.8101092896175, "confidence": [2020.8101092896175, 2020.8101092896175]}, "tsne_x": {"value": -6.340170885989238}, "umap_x": {"value": 7.0115366}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3390573}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.770939059045031}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.18387192622195}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.1713179658381754}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 2.9075436153467}, "mds3": {"value": 1.7387370224788212}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.940781551935222}}, "branch_attrs": {"mutations": {"nuc": ["G4454A", "C28706T"]}}}, {"name": "NODE_0000432", "node_attrs": {"div": 10, "num_date": {"value": 2020.902435503706, "confidence": [2020.8207366941972, 2020.905737704918]}}, "branch_attrs": {"mutations": {"nuc": ["C2902T", "G4392A", "C15579T"]}}, "children": [{"name": "KEN/C74755/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.905737704918, "confidence": [2020.905737704918, 2020.905737704918]}, "tsne_x": {"value": -6.285865045964321}, "umap_x": {"value": 7.4852366}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0569226}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.437020264193042}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.201083106600612}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.312193912059048}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 0.6523355344914133}, "mds3": {"value": 1.647177920074032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 5.798620255050449}}, "branch_attrs": {"mutations": {}}}, {"name": "KEN/C75412/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.9248633879781, "confidence": [2020.9248633879781, 2020.9248633879781]}, "tsne_x": {"value": -6.58846808520133}, "umap_x": {"value": 6.5413437}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6541252}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.777605919168528}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.071342271892174}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.1401269173112456}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 3.520930854907747}, "mds3": {"value": 2.849956284040616}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.888836154689278}}, "branch_attrs": {"mutations": {"nuc": ["C25721T"]}}}]}]}, {"name": "NODE_0000426", "node_attrs": {"div": 6, "num_date": {"value": 2020.3233262830643, "confidence": [2020.101398384923, 2020.679377944011]}}, "branch_attrs": {"mutations": {"nuc": ["T26767C"]}}, "children": [{"name": "NODE_0000427", "node_attrs": {"div": 26, "num_date": {"value": 2020.8937429823177, "confidence": [2020.7891612058975, 2020.9704925583028]}}, "branch_attrs": {"mutations": {"nuc": ["C1498T", "A1807G", "G2659A", "C6285T", "T8593C", "C9565T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "C14407T", "C18171T", "A20724G", "A21717G", "C21762T", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "T21992-", "A21993-", "T21994-", "G23012A", "G23593C", "T24224C", "C24748T", "C26305T", "T27205-", "T27206-", "T27207-", "C28278-", "T28279-", "G28280-", "C28308G", "A28699G", "C28887T", "G29543T", "T29728-", "T29729-", "C29730-", "A29731-", "C29732-", "C29733-", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "T29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-", "A29763-", "G29764-", "T29765-", "G29766-", "A29767-", "A29768-", "C29769-", "A29770-", "A29771-", "T29772-", "G29773-", "C29774-", "T29775-", "A29776-"], "S": ["Q52R", "A67V", "I68X", "H69-", "V70X", "Y144-", "E484K", "Q677H", "F888L", "*1274X"]}, "labels": {"aa": "S: Q52R, A67V, I68X, H69-, V70X, Y144-, E484K, Q677H, F888L, *1274X"}}, "children": [{"name": "NGA/CV639/2020", "node_attrs": {"div": 30, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -7.5171989605315055}, "umap_x": {"value": 1.6593342}, "Nextstrain_clade": {"value": "21D (Eta)"}, "umap_y": {"value": -1.7185928}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.571672153584491}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.941341763891867}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 22.864807966409074}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": -28.47883652967178}, "mds3": {"value": 11.570257225850018}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -11.892646437508237}}, "branch_attrs": {"mutations": {"nuc": ["G8470A", "A12162G", "C19938T", "C27213T"]}}}, {"name": "NODE_0000584", "node_attrs": {"div": 26, "num_date": {"value": 2020.937790677156, "confidence": [2020.789849835229, 2021.0463190097728]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LBY/BTRCLibyaSARS-CoV-2WGS-5/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.1520547945206, "confidence": [2021.1520547945206, 2021.1520547945206]}, "tsne_x": {"value": -7.518046771602661}, "umap_x": {"value": 1.6817406}, "Nextstrain_clade": {"value": "21D (Eta)"}, "umap_y": {"value": -1.7590617}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.636326602760973}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.93954053060055}, "country": {"value": "Libya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.881384886542904}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Libya"}, "mds2": {"value": 33.85236771433187}, "mds3": {"value": 6.924268923079652}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 15.975773516299576}}, "branch_attrs": {"mutations": {"nuc": ["C884T", "A19779G", "C22570T", "A25389G", "G28233T"]}}}, {"name": "NODE_0000586", "node_attrs": {"div": 26, "num_date": {"value": 2020.9585935039563, "confidence": [2020.7982246070485, 2021.0639896478783]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DJI/NAMRU3_A844/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.3821917808218, "confidence": [2021.3821917808218, 2021.3821917808218]}, "tsne_x": {"value": -7.512285231983728}, "umap_x": {"value": 1.7376425}, "Nextstrain_clade": {"value": "21D (Eta)"}, "umap_y": {"value": -1.8261968}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.352512400105558}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.940557582381032}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.944993887466627}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Djibouti"}, "mds2": {"value": 30.030727088231508}, "mds3": {"value": 7.124226287392179}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 5.32487872111015}}, "branch_attrs": {"mutations": {"nuc": ["G1874T", "C15342T", "T15684C", "G25996T"]}}}, {"name": "NGA/CV1269/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_x": {"value": -7.512396638492127}, "umap_x": {"value": 1.7076817}, "Nextstrain_clade": {"value": "21D (Eta)"}, "umap_y": {"value": -1.7738487}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.575217209118719}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -20.94268591819236}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 30.195050724536028}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": -23.27579910016852}, "mds3": {"value": 15.52375163705705}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 3.6241312154262415}}, "branch_attrs": {"mutations": {"nuc": ["C335T", "A3337G", "C6037T", "C6286T", "C10519T", "C26013T", "G28857T"]}}}]}]}]}, {"name": "NODE_0000423", "node_attrs": {"div": 20, "num_date": {"value": 2020.7646619112093, "confidence": [2020.4934604821876, 2021.1017199423488]}}, "branch_attrs": {"mutations": {"nuc": ["G210T", "C21618G", "G21987A", "A22029-", "G22030-", "T22031-", "T22032-", "C22033-", "A22034-", "T22917G", "C22995A", "C23604G", "G24410A", "C25469T", "T27638C", "C27752T", "C28253-", "A28271-", "A28461G", "G28881T", "G29402T"], "S": ["T19R", "G142D", "E156X", "F157-", "R158X", "L452R", "T478K", "P681R", "D950N", "*1274X"]}, "labels": {"aa": "S: T19R, G142D, E156X, F157-, R158X, L452R, T478K, P681R, D950N, *1274X"}}, "children": [{"name": "NODE_0000424", "node_attrs": {"div": 28, "num_date": {"value": 2021.320930274168, "confidence": [2021.0773547591764, 2021.4754144244164]}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "C1267T", "C5184T", "G9203A", "T9678C", "C11005A", "A17496G", "A20396G", "A21792C", "-28253T", "C29870A"], "S": ["K77T"]}, "labels": {"aa": "S: K77T"}}, "children": [{"name": "BHR/21921808877/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.8287671232877, "confidence": [2021.8287671232877, 2021.8287671232877]}, "tsne_x": {"value": 11.156853273921945}, "umap_x": {"value": -10.4592495}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.3131}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.711975424991339}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 5.437218625063704}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.610290228137604}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bahrain"}, "mds2": {"value": 27.002708303229305}, "mds3": {"value": 15.772325249417888}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -9.5546585153076}}, "branch_attrs": {"mutations": {"nuc": ["C2523T", "A3195G", "C12933T", "C17502T", "A21987G", "C25721T", "G28048T", "T28820C"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "NODE_0000425", "node_attrs": {"div": 30, "num_date": {"value": 2021.4143508230372, "confidence": [2021.2431960549875, 2021.478082191781]}}, "branch_attrs": {"mutations": {"nuc": ["C6027A", "C16915T"]}}, "children": [{"name": "USA/CA-CDC-QDX26299948/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.478082191781, "confidence": [2021.478082191781, 2021.478082191781]}, "tsne_x": {"value": 11.168615701080713}, "umap_x": {"value": -10.366961}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.087641}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.708593601556576}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.35"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 5.451344076710653}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.181446371462474}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "California"}, "mds2": {"value": 23.11270855512613}, "mds3": {"value": 19.06793421378409}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 0.3477645021118115}}, "branch_attrs": {"mutations": {"nuc": ["C13989T", "G23012C"], "S": ["E484Q"]}, "labels": {"aa": "S: E484Q"}}}, {"name": "USA/CA-CDPH-3000278573/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_x": {"value": 11.11151778379918}, "umap_x": {"value": -10.603047}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.55993}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 31.40147173329287}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 5.381039534014608}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 6.7146664169361285}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "USA"}, "mds2": {"value": 8.731782931415252}, "mds3": {"value": 40.30939189677749}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -2.9960198474250124}}, "branch_attrs": {"mutations": {"nuc": ["T1443C", "C5575T", "T7582C", "C9491T", "G16014T", "C25452T", "G28027T", "C29420T", "A29433G"]}}}]}]}, {"name": "NODE_0000076", "node_attrs": {"div": 22, "num_date": {"value": 2020.820835160103, "confidence": [2020.5654178200346, 2021.1180612034573]}}, "branch_attrs": {"mutations": {"nuc": ["G15451A", "C16466T", "G28248-", "A28249-", "T28250-", "T28251-", "T28252-"]}}, "children": [{"name": "NODE_0000048", "node_attrs": {"div": 24, "num_date": {"value": 2020.9412480195992, "confidence": [2020.6284753770651, 2021.1502271316244]}}, "branch_attrs": {"mutations": {"nuc": ["C5184T", "C9891T", "T11418C"]}}, "children": [{"name": "NODE_0000049", "node_attrs": {"div": 29, "num_date": {"value": 2021.0698222762223, "confidence": [2020.9101051616467, 2021.1982883891428]}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "C1267T", "T12946C", "A20262G", "C27739T"]}}, "children": [{"name": "NODE_0000050", "node_attrs": {"div": 33, "num_date": {"value": 2021.202715800928, "confidence": [2021.0743035739854, 2021.2622281469583]}}, "branch_attrs": {"mutations": {"nuc": ["C6539T", "C20320T", "C24745T", "G29427A"]}}, "children": [{"name": "NODE_0000053", "node_attrs": {"div": 34, "num_date": {"value": 2021.2451797287079, "confidence": [2021.1428312334872, 2021.2643835616439]}}, "branch_attrs": {"mutations": {"nuc": ["C14262T"]}}, "children": [{"name": "NZL/21MV0334/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2643835616439, "confidence": [2021.2643835616439, 2021.2643835616439]}, "tsne_x": {"value": 12.611495095039968}, "umap_x": {"value": -10.398846}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.132992}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.0294525836536845}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.437712132238777}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.2675492817162266}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 12.045704680149118}, "mds3": {"value": 30.94781518653667}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 4.299321852037013}}, "branch_attrs": {"mutations": {"nuc": ["C19391T"]}}}, {"name": "NODE_0000054", "node_attrs": {"div": 35, "num_date": {"value": 2021.3220947249586, "confidence": [2021.1655145413408, 2021.3810040676397]}}, "branch_attrs": {"mutations": {"nuc": ["C29358T"]}}, "children": [{"name": "LAO/LOMWRU-0812/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.623287671233, "confidence": [2021.623287671233, 2021.623287671233]}, "tsne_x": {"value": 12.946368590633009}, "umap_x": {"value": -10.699997}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.660471}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.380521548939912}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.4819515334257884}, "country": {"value": "Laos"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.139254263585713}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Laos"}, "mds2": {"value": 26.00779454553137}, "mds3": {"value": 38.55347184856097}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 18.848304258841488}}, "branch_attrs": {"mutations": {"nuc": ["T3306C", "C4829A", "G8137T", "G17331T", "T23480C", "G24872T", "C29149T", "C29530T", "T29681C"], "S": ["S640P", "V1104L"]}, "labels": {"aa": "S: S640P, V1104L"}}}, {"name": "BGD/Laila_303/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.609589041096, "confidence": [2021.609589041096, 2021.609589041096]}, "tsne_x": {"value": 12.850117912013388}, "umap_x": {"value": -10.641547}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.581928}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.39280914216356}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.438618060379566}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.05529171148324}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 25.45536324532189}, "mds3": {"value": 32.272467326320225}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -3.443474669017839}}, "branch_attrs": {"mutations": {"nuc": ["A8564-", "A8565-", "T8566-", "T14551C", "G21255T", "A21987G", "G27637T", "A28032G", "C29137T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}]}]}, {"name": "NODE_0000594", "node_attrs": {"div": 33, "num_date": {"value": 2021.2571957937278, "confidence": [2021.0699405156677, 2021.2698630136986]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0343/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2698630136986, "confidence": [2021.2698630136986, 2021.2698630136986]}, "tsne_x": {"value": 12.53502786569589}, "umap_x": {"value": -10.205316}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 11.871803}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.993553058153191}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.44175769929759}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.667778415047151}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 12.886240410242252}, "mds3": {"value": 27.17474026797448}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 4.298527139775613}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000051", "node_attrs": {"div": 36, "num_date": {"value": 2021.3469893504698, "confidence": [2021.1893192565421, 2021.4897350365688]}}, "branch_attrs": {"mutations": {"nuc": ["G2235A", "C5497T", "C25162A"]}}, "children": [{"name": "MNG/10011791/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6972602739727, "confidence": [2021.6972602739727, 2021.6972602739727]}, "tsne_x": {"value": 12.932233197164978}, "umap_x": {"value": -10.739915}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.709758}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.319455967542571}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.521949751118905}, "country": {"value": "Mongolia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.115772307448769}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Mongolia"}, "mds2": {"value": 23.57614743619718}, "mds3": {"value": 39.80073135875723}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -12.171455200457602}}, "branch_attrs": {"mutations": {"nuc": ["A330G", "C4084T", "G18078T", "C24370T", "G26428T", "C27131T", "T29038C", "C29358T"]}}}, {"name": "MNG/3002951678/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5849315068492, "confidence": [2021.5849315068492, 2021.5849315068492]}, "tsne_x": {"value": 12.896436799389384}, "umap_x": {"value": -10.6730585}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.631597}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.875911546421433}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.53948169013477}, "country": {"value": "Mongolia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.003539853999967}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Mongolia"}, "mds2": {"value": 28.28642162323753}, "mds3": {"value": 35.471418772032266}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -6.269984544938219}}, "branch_attrs": {"mutations": {"nuc": ["T5218C", "C11900T", "G18525C", "C26340T", "C27590T", "G29000T", "G29674A"]}}}]}]}, {"name": "NODE_0000056", "node_attrs": {"div": 36, "num_date": {"value": 2021.4939457864905, "confidence": [2021.3177776126565, 2021.5580810650026]}}, "branch_attrs": {"mutations": {"nuc": ["C9319T", "A13482G", "G28690T"]}}, "children": [{"name": "THA/CONI-1146/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5712328767124, "confidence": [2021.5712328767124, 2021.5712328767124]}, "tsne_x": {"value": 12.722276607337596}, "umap_x": {"value": -10.488075}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.35195}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.125651535329447}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.30"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.443204650124879}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.6799872686027657}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Tak"}, "mds2": {"value": 14.639255643450996}, "mds3": {"value": 33.94962700834594}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 14.78604213473306}}, "branch_attrs": {"mutations": {"nuc": ["T1165C"]}}}, {"name": "NODE_0000601", "node_attrs": {"div": 36, "num_date": {"value": 2021.5082598469212, "confidence": [2021.3287177627278, 2021.5672821048781]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/MTM_01_001/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.7465753424658, "confidence": [2021.7465753424658, 2021.7465753424658]}, "tsne_x": {"value": 13.13460966195347}, "umap_x": {"value": -10.741617}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.72461}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.160966789645222}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.30"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.438966882373536}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.735326259804001}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bangkok"}, "mds2": {"value": 14.862449924489866}, "mds3": {"value": 46.833852008150416}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 22.073210129193743}}, "branch_attrs": {"mutations": {"nuc": ["C2976T", "A3538T", "C12663T", "G13390A", "G15826A", "C18457T", "T19584C", "A22893G", "C26533T", "G27047A", "C28076T", "G28632C"], "S": ["K444R"]}, "labels": {"aa": "S: K444R"}}}, {"name": "NODE_0000602", "node_attrs": {"div": 36, "num_date": {"value": 2021.529761908781, "confidence": [2021.3481477746477, 2021.609618226949]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/MTM_01_025/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.817808219178, "confidence": [2021.817808219178, 2021.817808219178]}, "tsne_x": {"value": 12.946294649616656}, "umap_x": {"value": -10.649291}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.592562}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.764118945516964}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.30"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.436715348345205}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.472873794999541}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bangkok"}, "mds2": {"value": 10.993828846409318}, "mds3": {"value": 41.01550536921416}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 28.93798644015249}}, "branch_attrs": {"mutations": {"nuc": ["C1441T", "C1457T", "C8733T", "A13712G", "T16974C", "T20331C", "A26459G"]}}}, {"name": "THA/CONI-1080/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.658904109589, "confidence": [2021.658904109589, 2021.658904109589]}, "tsne_x": {"value": 12.7711008643506}, "umap_x": {"value": -10.473458}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.34159}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.1394712731930845}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.30"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.438898532818492}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.065789448038353}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Tak"}, "mds2": {"value": 15.903534660115152}, "mds3": {"value": 33.91093303112031}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 15.972212594314035}}, "branch_attrs": {"mutations": {"nuc": ["C14318T", "C18582T"]}}}]}]}]}]}, {"name": "NODE_0000059", "node_attrs": {"div": 30, "num_date": {"value": 2021.1237344683857, "confidence": [2021.0185359724449, 2021.2141489013716]}}, "branch_attrs": {"mutations": {"nuc": ["C18176T"]}}, "children": [{"name": "NODE_0000518", "node_attrs": {"div": 30, "num_date": {"value": 2021.1261956512028, "confidence": [2021.0289775935098, 2021.2219335533032]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000071", "node_attrs": {"div": 31, "num_date": {"value": 2021.1675459512267, "confidence": [2021.0844653006016, 2021.2232876712328]}}, "branch_attrs": {"mutations": {"nuc": ["C11455T"]}}, "children": [{"name": "IND/GBRC710/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2232876712328, "confidence": [2021.2232876712328, 2021.2232876712328]}, "tsne_x": {"value": 12.355098804128716}, "umap_x": {"value": -10.286254}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 11.994687}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.185438617405222}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.398154187871972}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.61203172335158}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "India"}, "mds2": {"value": 14.016624243284364}, "mds3": {"value": 28.53537064631748}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -2.9605080389334524}}, "branch_attrs": {"mutations": {"nuc": ["G16288A", "C28087T"]}}}, {"name": "NODE_0000608", "node_attrs": {"div": 31, "num_date": {"value": 2021.1861994215285, "confidence": [2021.0846472297774, 2021.2372754235969]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC692/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2945205479452, "confidence": [2021.2945205479452, 2021.2945205479452]}, "tsne_x": {"value": 12.350378448329272}, "umap_x": {"value": -10.332445}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.046959}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.185610019920703}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.397323760589002}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.805057645609213}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "India"}, "mds2": {"value": 14.486318673693326}, "mds3": {"value": 28.134149138071862}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -2.9646092078195045}}, "branch_attrs": {"mutations": {"nuc": ["C11003T", "C29098A"]}}}, {"name": "IND/GBRC827a/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.3438356164384, "confidence": [2021.3438356164384, 2021.3438356164384]}, "tsne_x": {"value": 12.400439467113326}, "umap_x": {"value": -10.560189}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.4501}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.186653261518982}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.272227589954911}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.065184216197852}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "India"}, "mds2": {"value": 24.673714986728992}, "mds3": {"value": 28.68182887209469}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -2.9680148259938672}}, "branch_attrs": {"mutations": {"nuc": ["C1471T", "C14120T", "C24198T", "A24410G", "T24658C", "A25457G", "G26211T", "C26645T"], "S": ["A879V", "N950D"]}, "labels": {"aa": "S: A879V, N950D"}}}]}]}, {"name": "NODE_0000064", "node_attrs": {"div": 31, "num_date": {"value": 2021.1849292387053, "confidence": [2021.088137025452, 2021.2833090518516]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NODE_0000066", "node_attrs": {"div": 33, "num_date": {"value": 2021.255800828087, "confidence": [2021.1556139521374, 2021.3080500694743]}}, "branch_attrs": {"mutations": {"nuc": ["T24984G", "G26428T"], "S": ["L1141W"]}, "labels": {"aa": "S: L1141W"}}, "children": [{"name": "USA/IL-CDC-ASC210064841/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.376712328767, "confidence": [2021.376712328767, 2021.376712328767]}, "tsne_x": {"value": 12.369026229011087}, "umap_x": {"value": -10.340142}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.055079}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 10.529885849564693}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.343966756547294}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.811392309433725}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Illinois"}, "mds2": {"value": 14.528943851331478}, "mds3": {"value": 29.06873730181792}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -16.82168956040321}}, "branch_attrs": {"mutations": {"nuc": ["C12823T", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "C28708T"]}}}, {"name": "NZL/21MV0410/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3383561643836, "confidence": [2021.3383561643836, 2021.3383561643836]}, "tsne_x": {"value": 12.388929264964876}, "umap_x": {"value": -10.425457}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.263128}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.99560635944077}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.344502284876496}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.113970547086922}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 23.09882866027572}, "mds3": {"value": 23.07497234879824}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 4.297828532624916}}, "branch_attrs": {"mutations": {"nuc": ["C2841T", "C6926T", "C10450T", "T19866C"]}}}]}, {"name": "NODE_0000612", "node_attrs": {"div": 31, "num_date": {"value": 2021.2426590252128, "confidence": [2021.0591458313497, 2021.5292156261892]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SYC/SS3438/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5958904109589, "confidence": [2021.5958904109589, 2021.5958904109589]}, "tsne_x": {"value": 12.3652078739904}, "umap_x": {"value": -10.428995}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.270941}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 20.80379256604988}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.19"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.324883873018037}, "country": {"value": "Seychelles"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.3061322801899159}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Seychelles"}, "mds2": {"value": 13.08771983452815}, "mds3": {"value": 33.23900820573452}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 8.600120353140927}}, "branch_attrs": {"mutations": {"nuc": ["C478T", "G11083T", "G24428T", "G25019T", "A25562G", "G25563T", "G25947T", "C27769T"], "S": ["A956S", "D1153Y"]}, "labels": {"aa": "S: A956S, D1153Y"}}}, {"name": "NODE_0000613", "node_attrs": {"div": 31, "num_date": {"value": 2021.259689810681, "confidence": [2021.066247564821, 2021.5433627077953]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AZ-CDC-ASC210137649/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6835616438357, "confidence": [2021.6835616438357, 2021.6835616438357]}, "tsne_x": {"value": 12.396417431220154}, "umap_x": {"value": -10.6457615}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.552542}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.627039973253225}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.54"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.1981756575639}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.405325918052547}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Arizona"}, "mds2": {"value": 28.75602814721495}, "mds3": {"value": 25.34003414256757}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -8.149570863773953}}, "branch_attrs": {"mutations": {"nuc": ["C193T", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "C4189T", "T5266C", "G14187A", "C17676T", "C19160T", "C25658T", "A25806G", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-"]}}}, {"name": "NODE_0000614", "node_attrs": {"div": 31, "num_date": {"value": 2021.321511238623, "confidence": [2021.0610175492493, 2021.5457569651367]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921871745/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_x": {"value": 12.406631421515543}, "umap_x": {"value": -10.713875}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.678896}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.653003279116274}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 5.947841947382543}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.4992055580831884}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bahrain"}, "mds2": {"value": 30.304313443302515}, "mds3": {"value": 32.53440019692304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 15.13480045049249}}, "branch_attrs": {"mutations": {"nuc": ["G707A", "C1205A", "A1588G", "A5499G", "C8320T", "A18956G", "C20930T", "A21944G", "G23383T", "C23896T", "A24408T", "C27575G", "C28732T", "G29383T"], "S": ["I128V", "Q607H", "Q949L"]}, "labels": {"aa": "S: I128V, Q607H, Q949L"}}}, {"name": "BGD/Laila_514/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7630136986302, "confidence": [2021.7630136986302, 2021.7630136986302]}, "tsne_x": {"value": 12.414315960015504}, "umap_x": {"value": -10.60694}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.534545}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.396711327946606}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.050141649855592}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.6733668034417057}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 18.92923158231527}, "mds3": {"value": 35.26162365114457}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -4.947985211657863}}, "branch_attrs": {"mutations": {"nuc": ["T2815C", "C6361T", "T15254C", "A15873G", "T17007C", "A18468G", "G22104T", "A24410G", "A25983G", "G26196T", "A27321G", "-28271A"], "S": ["G181V", "N950D"]}, "labels": {"aa": "S: G181V, N950D"}}}]}]}]}]}]}, {"name": "NODE_0000615", "node_attrs": {"div": 30, "num_date": {"value": 2021.1424642385866, "confidence": [2021.026783449823, 2021.2496775406219]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000618", "node_attrs": {"div": 30, "num_date": {"value": 2021.168422167522, "confidence": [2021.028655325834, 2021.2659058466572]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDPH-3000118391/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5164383561644, "confidence": [2021.5164383561644, 2021.5164383561644]}, "tsne_x": {"value": 12.391151763278392}, "umap_x": {"value": -10.525488}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.408333}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.655813853309449}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.329869040498021}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.342029724276963}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "USA"}, "mds2": {"value": 19.33081656577244}, "mds3": {"value": 31.94425546045604}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -16.089132463171605}}, "branch_attrs": {"mutations": {"nuc": ["T1877G", "G10870T", "C12400A", "A12416G", "G17790T", "C19160T", "G20718T"]}}}, {"name": "NODE_0000060", "node_attrs": {"div": 36, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3554100298516, 2021.3986301369864]}}, "branch_attrs": {"mutations": {"nuc": ["T6023C", "C9598T", "A21137G", "G25088T", "A25562G", "C27092T"], "S": ["V1176F"]}, "labels": {"aa": "S: V1176F"}}, "children": [{"name": "CHN/5646/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3986301369864, 2021.3986301369864]}, "tsne_x": {"value": 12.40380643450641}, "umap_x": {"value": -10.476258}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.335717}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.828886137084561}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.351486471648429}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.5016785492524614}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Guangdong"}, "mds2": {"value": 16.75043043369798}, "mds3": {"value": 31.80923610683759}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -9.924638294475622}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000621", "node_attrs": {"div": 36, "num_date": {"value": 2021.4315068493152, "confidence": [2021.3938597916574, 2021.4315068493152]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/6341/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_x": {"value": 12.401898863213344}, "umap_x": {"value": -10.500022}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.371386}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.1953965299887495}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.353928716657307}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.134891159647337}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Guangdong"}, "mds2": {"value": 17.705020873908754}, "mds3": {"value": 31.322804478301773}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -6.127334539893801}}, "branch_attrs": {"mutations": {}}}, {"name": "CHN/6555/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.445205479452, "confidence": [2021.445205479452, 2021.445205479452]}, "tsne_x": {"value": 12.404516734567997}, "umap_x": {"value": -10.476979}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.336577}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.428021761745091}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.350413413853504}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.7234485717786816}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Guangdong"}, "mds2": {"value": 15.92035499030412}, "mds3": {"value": 31.759712637402213}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -15.776219685076702}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000622", "node_attrs": {"div": 30, "num_date": {"value": 2021.1672527502876, "confidence": [2021.0300975519876, 2021.256326541305]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC1261/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.3219178082193, "confidence": [2021.3219178082193, 2021.3219178082193]}, "tsne_x": {"value": 12.379791550096236}, "umap_x": {"value": -10.379071}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.242491}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.740665713200132}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.349254197701347}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.100942166219416}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "India"}, "mds2": {"value": 19.49264191698267}, "mds3": {"value": 28.15527070082373}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -2.6514663129582154}}, "branch_attrs": {"mutations": {"nuc": ["T851A", "A11763G", "A13099G", "A24410G", "C28708T", "G29711T"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "NODE_0000073", "node_attrs": {"div": 31, "num_date": {"value": 2021.2422787438963, "confidence": [2021.0657814405442, 2021.4018519084632]}}, "branch_attrs": {"mutations": {"nuc": ["A18468G"]}}, "children": [{"name": "USA/CA-CDPH-6000009867/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4945205479453, "confidence": [2021.4945205479453, 2021.4945205479453]}, "tsne_x": {"value": 12.401973125689585}, "umap_x": {"value": -10.548883}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.432951}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.614377039874135}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.13"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.31661704169162}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.077828017850173}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "USA"}, "mds2": {"value": 18.98318563978932}, "mds3": {"value": 33.04755765442353}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 13.433717714283585}}, "branch_attrs": {"mutations": {"nuc": ["G105T", "T1971C", "G5230T", "T16473C", "A17406G", "A22190-", "T22191-", "T22192-", "C29095T"], "S": ["I210-"]}, "labels": {"aa": "S: I210-"}}}, {"name": "NODE_0000074", "node_attrs": {"div": 32, "num_date": {"value": 2021.3242112699534, "confidence": [2021.1132030153733, 2021.5048236974199]}}, "branch_attrs": {"mutations": {"nuc": ["T26076A"]}}, "children": [{"name": "KEN/SS7129/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6068493150685, "confidence": [2021.6068493150685, 2021.6068493150685]}, "tsne_x": {"value": 12.413205621165783}, "umap_x": {"value": -10.6079645}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.542983}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.068253881917585}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.2370811090926}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.033835097615728}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Kenya"}, "mds2": {"value": 21.232919932238367}, "mds3": {"value": 35.346685851534005}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 2.111348285706864}}, "branch_attrs": {"mutations": {"nuc": ["C100T", "A2026G", "C4999T", "A5040G", "C6990T", "C13297T", "C19763T", "G21123T"]}}}, {"name": "NODE_0000625", "node_attrs": {"div": 32, "num_date": {"value": 2021.414326211362, "confidence": [2021.1055320165374, 2021.515288125454]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS4383/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.9109589041095, "confidence": [2021.9109589041095, 2021.9109589041095]}, "tsne_x": {"value": 12.389968355653796}, "umap_x": {"value": -10.6728325}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.621516}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.779287092670204}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.207893458386027}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.579434956482929}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Kenya"}, "mds2": {"value": 23.410144718948967}, "mds3": {"value": 34.588357960299554}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 1.980273055155876}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "A6832G", "C7732T", "G8861A", "T12189C", "A19821T", "C23029T", "G24926T", "G25947C"], "S": ["V1122L"]}, "labels": {"aa": "S: V1122L"}}}, {"name": "KEN/SS7273/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.6260273972603, "confidence": [2021.6260273972603, 2021.6260273972603]}, "tsne_x": {"value": 12.414863539558583}, "umap_x": {"value": -10.583383}, "Nextstrain_clade": {"value": "21A (Delta)"}, "umap_y": {"value": 12.4852915}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.040717983760095}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 6.282386504894613}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.2663369866781349}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Kenya"}, "mds2": {"value": 17.02841797608948}, "mds3": {"value": 35.09594052364022}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 1.8054407404576387}}, "branch_attrs": {"mutations": {"nuc": ["G213T", "C9510T", "C17746T", "G23120T", "T25236C", "G28703C"], "S": ["A520S", "I1225T"]}, "labels": {"aa": "S: A520S, I1225T"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000008", "node_attrs": {"div": 28, "num_date": {"value": 2021.1270187768598, "confidence": [2020.9196358312963, 2021.251297633543]}}, "branch_attrs": {"mutations": {"nuc": ["A5584G", "C11514T", "C13019T", "C22227T"], "S": ["A222V"]}, "labels": {"aa": "S: A222V"}}, "children": [{"name": "NODE_0000028", "node_attrs": {"div": 29, "num_date": {"value": 2021.1839637898727, "confidence": [2020.9573992023495, 2021.3975614293674]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "Switzerland/BE-UHB-42993192/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6123287671232, "confidence": [2021.6123287671232, 2021.6123287671232]}, "tsne_x": {"value": 10.848797328244038}, "umap_x": {"value": -10.519074}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.384471}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.755669234273029}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.70"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.365701659456826}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.29092123166199}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bern"}, "mds2": {"value": 10.852541083113705}, "mds3": {"value": 35.04591386952542}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 5.699004510307335}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "C3828T", "C4891T", "G18445A", "G19656T", "G21255T", "G21624C", "G26217T", "G28899T", "G28903T"], "S": ["R21T"]}, "labels": {"aa": "S: R21T"}}}, {"name": "KOR/KD-Cov-D3/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9136986301369, "confidence": [2021.9136986301369, 2021.9136986301369]}, "tsne_x": {"value": 10.525038931874722}, "umap_x": {"value": -10.711108}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.676467}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.650932232611178}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.69"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.983806249647456}, "country": {"value": "South Korea"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.1779381454961175}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "South Korea"}, "mds2": {"value": 10.077788186132349}, "mds3": {"value": 46.186804303043154}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 0.5456455153466996}}, "branch_attrs": {"mutations": {"nuc": ["G1274T", "C3809T", "C3984T", "A4405T", "A4838G", "G9431A", "T12023G", "G16864A", "G17847A", "G18985T", "G19072A", "C21306T", "G22216A", "G25720T", "C26313T", "C27559T", "G28090T"]}}}]}, {"name": "NODE_0000032", "node_attrs": {"div": 29, "num_date": {"value": 2021.150541655355, "confidence": [2020.9780288206396, 2021.3148064377688]}}, "branch_attrs": {"mutations": {"nuc": ["G1820A"]}}, "children": [{"name": "USA/CA-CDC-FG-036722/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4205479452055, "confidence": [2021.4205479452055, 2021.4205479452055]}, "tsne_x": {"value": 11.19151538800638}, "umap_x": {"value": -10.415077}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.227885}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.155477372107287}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.62"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.55414562730031}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.2126420000316545}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "California"}, "mds2": {"value": 20.36232340642093}, "mds3": {"value": 27.973501330893896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -4.006900305369082}}, "branch_attrs": {"mutations": {"nuc": ["A1045T", "A20085G", "T22882C", "G25440T", "C28093T", "G28221T", "G29440A"]}}}, {"name": "NZL/21CV0205/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.527397260274, "confidence": [2021.527397260274, 2021.527397260274]}, "tsne_x": {"value": 11.231100209803}, "umap_x": {"value": -10.61164}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.542591}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.48774640996736}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.24"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 8.083011523928237}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.54483371286442}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 28.46570684196597}, "mds3": {"value": 28.43619905036722}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 12.035127787807657}}, "branch_attrs": {"mutations": {"nuc": ["A2360G", "C6354T", "A6458G", "T7666C", "A9650G", "T20100C", "C23896T", "G25273C", "C25702T", "G28373T", "G28703T"], "S": ["M1237I"]}, "labels": {"aa": "S: M1237I"}}}]}, {"name": "NODE_0000539", "node_attrs": {"div": 28, "num_date": {"value": 2021.1407792867583, "confidence": [2020.9215171827657, 2021.286618337718]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0414/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3438356164384, "confidence": [2021.3438356164384, 2021.3438356164384]}, "tsne_x": {"value": 11.279037493645392}, "umap_x": {"value": -10.162642}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.804024}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 56.4444097843401}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.75"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.386128731768083}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": -10.636014607379796}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 17.116411048994564}, "mds3": {"value": 20.87948421268313}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 6.837422112171681}}, "branch_attrs": {"mutations": {"nuc": ["C1329A", "C10626T", "G10901T", "C21622T", "C22314T", "G29744A"], "S": ["P251L"]}, "labels": {"aa": "S: P251L"}}}, {"name": "NODE_0000039", "node_attrs": {"div": 32, "num_date": {"value": 2021.3240933066509, "confidence": [2021.162146142913, 2021.3782792915283]}}, "branch_attrs": {"mutations": {"nuc": ["C2509T", "G15760T", "A22310T", "G29212T", "G29717-", "C29718-", "C29719-", "A29720-", "C29721-", "C29722-", "A29723-", "C29724-", "A29725-", "T29726-", "T29727-", "T29728-", "T29729-", "C29730-", "A29731-", "C29732-", "C29733-", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "T29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-", "A29763-", "G29764-", "T29765-", "G29766-", "A29767-", "A29768-", "C29769-", "A29770-", "A29771-", "T29772-"], "S": ["T250S"]}, "labels": {"aa": "S: T250S"}}, "children": [{"name": "NODE_0000040", "node_attrs": {"div": 33, "num_date": {"value": 2021.3816122847122, "confidence": [2021.2600088416586, 2021.4572162739416]}}, "branch_attrs": {"mutations": {"nuc": ["A3553C"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-M058/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.4698630136986, "confidence": [2021.4698630136986, 2021.4698630136986]}, "tsne_x": {"value": 11.116459362418036}, "umap_x": {"value": -10.325616}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.039971}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.543105207192328}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.38"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.5601745461301535}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.648688724210642}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "South Africa"}, "mds2": {"value": 19.644425003169182}, "mds3": {"value": 24.15499251604541}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 6.718018678033937}}, "branch_attrs": {"mutations": {"nuc": ["G26152A"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-D193/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4945205479453, "confidence": [2021.4945205479453, 2021.4945205479453]}, "tsne_x": {"value": 10.969992596606184}, "umap_x": {"value": -10.558821}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.441236}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.308855954834892}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.38"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.750121433054836}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.928816971174896}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": 23.14760743065992}, "mds3": {"value": 28.44674613351284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 7.107519783439534}}, "branch_attrs": {"mutations": {"nuc": ["A6342G", "C7390T", "C14599T", "G23792A"], "S": ["G744S"]}, "labels": {"aa": "S: G744S"}}}]}, {"name": "NODE_0000631", "node_attrs": {"div": 32, "num_date": {"value": 2021.3220160497472, "confidence": [2021.1749246754114, 2021.3907325179873]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "South_Africa/UW21061422855/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_x": {"value": 11.01035321606269}, "umap_x": {"value": -10.493484}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.368703}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.798557490690788}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.38"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.682070199889744}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.201704079631322}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "South Africa"}, "mds2": {"value": 14.947508079617146}, "mds3": {"value": 33.53404937519662}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 29.593537971253223}}, "branch_attrs": {"mutations": {"nuc": ["G1141T", "C11020T", "C13197T", "G26268T", "C26895T", "-28271A"]}}}, {"name": "NODE_0000042", "node_attrs": {"div": 37, "num_date": {"value": 2021.5328767123287, "confidence": [2021.4957605268294, 2021.5328767123287]}}, "branch_attrs": {"mutations": {"nuc": ["C3737T", "G8602T", "C17766G", "G19947A", "G22403C"], "S": ["E281Q"]}, "labels": {"aa": "S: E281Q"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z558/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_x": {"value": 10.98657615697706}, "umap_x": {"value": -10.489983}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.336687}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.497857510672811}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.38"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.692169052704794}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.415911780201565}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "South Africa"}, "mds2": {"value": 23.074667468925}, "mds3": {"value": 26.35052120852385}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 7.063261091963743}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-LA-Z557/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_x": {"value": 10.941123109287554}, "umap_x": {"value": -10.547596}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.421458}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.394409955085659}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.38"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.715422290187847}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.82329821205606}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "South Africa"}, "mds2": {"value": 25.52217284604297}, "mds3": {"value": 23.47940676518412}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 6.861179240876747}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000633", "node_attrs": {"div": 28, "num_date": {"value": 2021.133844298276, "confidence": [2021.0028683244536, 2021.2549645500221]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000634", "node_attrs": {"div": 28, "num_date": {"value": 2021.1505799452898, "confidence": [2021.005391169659, 2021.2657941803914]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000029", "node_attrs": {"div": 29, "num_date": {"value": 2021.241522777569, "confidence": [2021.0402102442627, 2021.3897510115623]}}, "branch_attrs": {"mutations": {"nuc": ["C22792T"]}}, "children": [{"name": "OU602560", "node_attrs": {"div": 38, "num_date": {"value": 2021.6260273972603, "confidence": [2021.6260273972603, 2021.6260273972603]}, "tsne_x": {"value": 11.2152582098414}, "umap_x": {"value": -10.579054}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.482039}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.67862951185968}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.9"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.886336312586455}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.5692928145879358}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "England"}, "mds2": {"value": 7.391591120632262}, "mds3": {"value": 39.46985521215126}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 0.5191414950572598}}, "branch_attrs": {"mutations": {"nuc": ["C2388T", "T10388C", "C12747T", "C12789T", "A15779G", "C20703T", "G25459T", "T28136C", "G28871T"]}}}, {"name": "NODE_0000030", "node_attrs": {"div": 32, "num_date": {"value": 2021.414887664083, "confidence": [2021.2370506591642, 2021.5256619623353]}}, "branch_attrs": {"mutations": {"nuc": ["G1729A", "G14030A", "C18086T"]}}, "children": [{"name": "OU935527", "node_attrs": {"div": 35, "num_date": {"value": 2021.6342465753426, "confidence": [2021.6342465753426, 2021.6342465753426]}, "tsne_x": {"value": 11.227289151646325}, "umap_x": {"value": -10.3116665}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.02027}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.944477608150664}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.9.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.486515689918532}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.882620425877178}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Schleswig-Holstein"}, "mds2": {"value": 21.15392594462131}, "mds3": {"value": 21.797423054436297}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.342199676812594}}, "branch_attrs": {"mutations": {"nuc": ["A7291G", "A21987G", "T22685C"], "S": ["D142G", "S375P"]}, "labels": {"aa": "S: D142G, S375P"}}}, {"name": "IMS-10004-CVDP-009E1465-7ECB-45A4-B6C4-5E7E400CD7D1", "node_attrs": {"div": 39, "num_date": {"value": 2021.6150684931506, "confidence": [2021.6150684931506, 2021.6150684931506]}, "tsne_x": {"value": 11.422228755568426}, "umap_x": {"value": -10.535031}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.419752}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.000139041330954}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.9.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.896731228834124}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.39283641335482}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 25.71947954142753}, "mds3": {"value": 24.07860134402405}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -7.155448416863274}}, "branch_attrs": {"mutations": {"nuc": ["A7493G", "G12067T", "T13019C", "G19999T", "G21641T", "C29311T", "G29348T"], "S": ["A27S"]}, "labels": {"aa": "S: A27S"}}}]}]}, {"name": "NODE_0000637", "node_attrs": {"div": 28, "num_date": {"value": 2021.1683179285926, "confidence": [2021.005820461387, 2021.2698630136986]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0340/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2698630136986, "confidence": [2021.2698630136986, 2021.2698630136986]}, "tsne_x": {"value": 11.311378567843455}, "umap_x": {"value": -10.240277}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.916482}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.678352053824422}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.436768788636782}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.459427784242768}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 16.97257232808448}, "mds3": {"value": 25.34160018620848}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 0.5195639593773427}}, "branch_attrs": {"mutations": {"nuc": ["C1403A", "A14691G", "G20679T", "G25699T", "C27143T"]}}}, {"name": "NODE_0000002", "node_attrs": {"div": 29, "num_date": {"value": 2021.2408842474158, "confidence": [2021.0605226367957, 2021.3173380013122]}}, "branch_attrs": {"mutations": {"nuc": ["G25352T"], "S": ["V1264L"]}, "labels": {"aa": "S: V1264L"}}, "children": [{"name": "NODE_0000006", "node_attrs": {"div": 32, "num_date": {"value": 2021.322726626381, "confidence": [2021.2070026013957, 2021.359747287502]}}, "branch_attrs": {"mutations": {"nuc": ["G14028T", "A21987G", "C27005T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "BHR/920958892/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3602739726027, "confidence": [2021.3602739726027, 2021.3602739726027]}, "tsne_x": {"value": 11.16409458642103}, "umap_x": {"value": -10.119483}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.763433}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.258734405666991}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.345143189564083}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.53967126730062}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bahrain"}, "mds2": {"value": 18.303048744668864}, "mds3": {"value": 21.47748079564671}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -8.218940749255376}}, "branch_attrs": {"mutations": {"nuc": ["C26537T", "-28252T", "G28461A"]}}}, {"name": "NODE_0000640", "node_attrs": {"div": 32, "num_date": {"value": 2021.3484483517198, "confidence": [2021.2098186066148, 2021.402115146357]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921831480_S27_L001/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.8479452054794, "confidence": [2021.8479452054794, 2021.8479452054794]}, "tsne_x": {"value": 10.996183368695286}, "umap_x": {"value": -10.510932}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.387546}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.723346198530053}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.102619995712176}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.637569468648625}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Bahrain"}, "mds2": {"value": 25.68263687578296}, "mds3": {"value": 23.5844783094607}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -9.545423586957678}}, "branch_attrs": {"mutations": {"nuc": ["G709A", "G3231T", "C7926T", "T13019C", "T17826C", "G25555T", "A27880G", "C29541T"]}}}, {"name": "NZL/21MV0502/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_x": {"value": 11.286038790802316}, "umap_x": {"value": -10.130714}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.774156}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 19.66760897386097}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.335548246517985}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.307431117904898}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 12.06214539495311}, "mds3": {"value": 22.98516558199883}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 6.735843158388561}}, "branch_attrs": {"mutations": {"nuc": ["C4551T", "A7757G"]}}}]}]}, {"name": "NODE_0000641", "node_attrs": {"div": 29, "num_date": {"value": 2021.3218284190614, "confidence": [2021.1222380727922, 2021.4572230942165]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000005", "node_attrs": {"div": 30, "num_date": {"value": 2021.4671232876713, "confidence": [2021.3989020132517, 2021.4671232876713]}}, "branch_attrs": {"mutations": {"nuc": ["G7393T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-AF02/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.8424657534247, "confidence": [2021.8424657534247, 2021.8424657534247]}, "tsne_x": {"value": 11.1273451766278}, "umap_x": {"value": -10.251834}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.927042}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 10.773117844944863}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.404533400629668}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.0677501695453343}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "South Africa"}, "mds2": {"value": 3.0573790397213725}, "mds3": {"value": 30.288124846862345}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 6.906543483808818}}, "branch_attrs": {"mutations": {"nuc": ["C2509T", "C15280T", "G15906T", "C19529T", "G24985A", "C28486T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-C694/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.4671232876713, "confidence": [2021.4671232876713, 2021.4671232876713]}, "tsne_x": {"value": 11.316875009803097}, "umap_x": {"value": -10.157649}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.799205}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.6385148557784937}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.343628787598378}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.501243941653115}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "South Africa"}, "mds2": {"value": 5.593133229575581}, "mds3": {"value": 18.15464501839219}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 5.583734766528919}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000643", "node_attrs": {"div": 29, "num_date": {"value": 2021.4119562671315, "confidence": [2021.1135336843754, 2021.4641011967637]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BEN/633618/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.83698630137, "confidence": [2021.83698630137, 2021.83698630137]}, "tsne_x": {"value": 11.080392900348448}, "umap_x": {"value": -10.217748}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.883402}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.712856760388867}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.183428013794172}, "country": {"value": "Benin"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.1445729586011368}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Benin"}, "mds2": {"value": -3.652854782224916}, "mds3": {"value": 29.66490132910632}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 13.148767314484813}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "C449T", "C4763T", "T6274C", "T11105A", "C12025T", "C24865T", "T25333C", "C25614T"]}}}, {"name": "NODE_0000000", "node_attrs": {"div": 31, "num_date": {"value": 2021.4948567450133, "confidence": [2021.3382859544904, 2021.5462679537304]}}, "branch_attrs": {"mutations": {"nuc": ["T2911G", "A27345T"]}}, "children": [{"name": "NZL/21MV0767/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.631506849315, "confidence": [2021.631506849315, 2021.631506849315]}, "tsne_x": {"value": 11.4331643672239}, "umap_x": {"value": -10.136971}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.802195}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.456159436866376}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.26"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.254158757512681}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.619558053597608}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 11.707378757381369}, "mds3": {"value": 21.382176819937165}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 11.908627353987615}}, "branch_attrs": {"mutations": {"nuc": ["A1098G", "C6310T", "A10915G", "G14294A"]}}}, {"name": "NODE_0000647", "node_attrs": {"div": 31, "num_date": {"value": 2021.5221356090963, "confidence": [2021.3460201585538, 2021.5538128203184]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-CDC-FG-102041/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.645205479452, "confidence": [2021.645205479452, 2021.645205479452]}, "tsne_x": {"value": 11.254768937448723}, "umap_x": {"value": -10.305988}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.005902}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.461023479876972}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.26"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.4023467791104}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.561855673991929}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Texas"}, "mds2": {"value": 15.36500924072194}, "mds3": {"value": 27.980429895558736}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -4.276300147288086}}, "branch_attrs": {"mutations": {"nuc": ["T3882C", "A6796G", "C23202T"], "S": ["T547I"]}, "labels": {"aa": "S: T547I"}}}, {"name": "USA/CA-CDPH-1002006878/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_x": {"value": 11.288653830075525}, "umap_x": {"value": -10.121264}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.75703}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 20.522263677679906}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.26"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.335323235907785}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -8.729333306427606}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "USA"}, "mds2": {"value": 13.19563834373704}, "mds3": {"value": 22.107188336231577}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 0.9272131025649556}}, "branch_attrs": {"mutations": {"nuc": ["A28190G"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000648", "node_attrs": {"div": 28, "num_date": {"value": 2021.1507065493731, "confidence": [2021.0725122525585, 2021.2592232680045]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000649", "node_attrs": {"div": 28, "num_date": {"value": 2021.1948490976065, "confidence": [2021.0449303867458, 2021.3889518441856]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000651", "node_attrs": {"div": 28, "num_date": {"value": 2021.2419587874153, "confidence": [2021.0410740793782, 2021.39187659644]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0578/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": 11.199511499169798}, "umap_x": {"value": -10.335161}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.050375}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.23157017409976}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.421142647244973}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -8.5251242247867}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 18.34257998758655}, "mds3": {"value": 26.062467067348432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 5.320115787247846}}, "branch_attrs": {"mutations": {"nuc": ["G6362A", "C6449T", "A11772G", "C16260T", "C18377T", "G29260T", "G29527A"]}}}, {"name": "PAK/JRCGR_KHI_SCV-113/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.6534246575343, "confidence": [2021.6534246575343, 2021.6534246575343]}, "tsne_x": {"value": 11.177393498003298}, "umap_x": {"value": -10.509648}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.402446}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.343314197044436}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.868769820636602}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.4226912484782497}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Pakistan"}, "mds2": {"value": 13.548928018983409}, "mds3": {"value": 36.63709518575929}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -12.13599314939944}}, "branch_attrs": {"mutations": {"nuc": ["C346T", "A5146G", "C8890T", "G9190T", "C12747T", "C14120T", "C15546T", "C18799A", "G28378T", "G28560T"]}}}]}, {"name": "NODE_0000034", "node_attrs": {"div": 29, "num_date": {"value": 2021.3225251548647, "confidence": [2021.070304645643, 2021.478105696792]}}, "branch_attrs": {"mutations": {"nuc": ["C12049T"]}}, "children": [{"name": "IND/INSACOG-GBRC1486/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.5520547945205, "confidence": [2021.5520547945205, 2021.5520547945205]}, "tsne_x": {"value": 11.260838293139496}, "umap_x": {"value": -10.207319}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.866825}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.206505173198715}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.401722956759407}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.04861811494678}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "India"}, "mds2": {"value": 15.743827523309053}, "mds3": {"value": 24.73391214880221}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -2.9656661599697345}}, "branch_attrs": {"mutations": {"nuc": ["C2623T", "C15720T", "G22899A"], "S": ["G446D"]}, "labels": {"aa": "S: G446D"}}}, {"name": "NODE_0000035", "node_attrs": {"div": 33, "num_date": {"value": 2021.4174982244047, "confidence": [2021.245780741072, 2021.5518876041233]}}, "branch_attrs": {"mutations": {"nuc": ["C1684T", "G5164T", "G22427A", "G28326T"], "S": ["V289I"]}, "labels": {"aa": "S: V289I"}}, "children": [{"name": "NODE_0000654", "node_attrs": {"div": 33, "num_date": {"value": 2021.4952756430353, "confidence": [2021.2315245237892, 2021.5458774587644]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS10665GENOV828369625692/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_x": {"value": 10.614832872725328}, "umap_x": {"value": -10.408194}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.204914}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 10.687826358162832}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.47"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.191676103090779}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.4840274863042366}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Brazil"}, "mds2": {"value": 7.749559667812098}, "mds3": {"value": 33.69267660447593}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 17.72569776770128}}, "branch_attrs": {"mutations": {"nuc": ["C355T", "G4006T", "A6355G", "C6990T", "C15024T", "G18525T", "T21802C", "A21987G", "T26765C"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "USA/GA-CDC-MMB09448592/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_x": {"value": 11.080077083591693}, "umap_x": {"value": -10.321612}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.037133}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.9730857081259705}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.47"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.368087854061835}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.809913234357063}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Georgia"}, "mds2": {"value": 20.00264144405645}, "mds3": {"value": 24.864795148780843}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -1.866571784147604}}, "branch_attrs": {"mutations": {"nuc": ["G12067T"]}}}]}, {"name": "NODE_0000037", "node_attrs": {"div": 34, "num_date": {"value": 2021.4938037332997, "confidence": [2021.287707775742, 2021.5456860730367]}}, "branch_attrs": {"mutations": {"nuc": ["A21405G"]}}, "children": [{"name": "USA/FL-CDC-LC0267547/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6835616438357, "confidence": [2021.6835616438357, 2021.6835616438357]}, "tsne_x": {"value": 10.65080172560798}, "umap_x": {"value": -10.642329}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.577972}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.2069632002564274}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.47"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.3042742864468595}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.880129325960151}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Florida"}, "mds2": {"value": 28.26957486888588}, "mds3": {"value": 29.36437128776121}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 17.790016736432083}}, "branch_attrs": {"mutations": {"nuc": ["C6848T", "G15530T", "G17562T", "A21620G", "C22571T", "C25463T", "T27553-"], "S": ["T20A", "P337S"]}, "labels": {"aa": "S: T20A, P337S"}}}, {"name": "USA/FL-CDC-LC0139946/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5739726027398, "confidence": [2021.5739726027398, 2021.5739726027398]}, "tsne_x": {"value": 10.795077478013711}, "umap_x": {"value": -10.300896}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.005361}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.629744583490754}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.47"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.231712920366911}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.076948068790536}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Florida"}, "mds2": {"value": 8.059127234185192}, "mds3": {"value": 31.57860075789305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 26.140308123218155}}, "branch_attrs": {"mutations": {"nuc": ["C5284T", "A9707G", "C11418T", "T11514C", "G21544A"]}}}]}]}]}]}, {"name": "NODE_0000657", "node_attrs": {"div": 28, "num_date": {"value": 2021.184845212693, "confidence": [2021.0692826382651, 2021.2679739972411]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-CDC-QDX25392379/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3986301369864, 2021.3986301369864]}, "tsne_x": {"value": 11.310617842631425}, "umap_x": {"value": -10.130916}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.775674}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.683280340777456}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.395213560679246}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.937235582596644}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 14.50387584581708}, "mds3": {"value": 23.56723818109671}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 0.5192117050995362}}, "branch_attrs": {"mutations": {"nuc": ["G6236A", "C12933A", "A23734G"]}}}, {"name": "NODE_0000658", "node_attrs": {"div": 28, "num_date": {"value": 2021.2068414456028, "confidence": [2021.0700893342587, 2021.2780821917809]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0354/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_x": {"value": 11.289098797687698}, "umap_x": {"value": -10.172178}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.822329}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.682236782893181}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 7.410831215596484}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.861845121689678}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "New Zealand"}, "mds2": {"value": 17.251711663789525}, "mds3": {"value": 23.1304968070286}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 0.5368252791656645}}, "branch_attrs": {"mutations": {"nuc": ["C10537T", "G19101T", "G26167T", "T26819C"]}}}, {"name": "NODE_0000010", "node_attrs": {"div": 30, "num_date": {"value": 2021.3239412589774, "confidence": [2021.257354598061, 2021.3749313751437]}}, "branch_attrs": {"mutations": {"nuc": ["C1403T", "G5584T"]}}, "children": [{"name": "NODE_0000011", "node_attrs": {"div": 31, "num_date": {"value": 2021.3690914576653, "confidence": [2021.32431038855, 2021.3849315068494]}}, "branch_attrs": {"mutations": {"nuc": ["A29500G"]}}, "children": [{"name": "VNM/OUCRU-NHTD436/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_x": {"value": 11.3967333332812}, "umap_x": {"value": -10.151846}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.789553}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.539714713116775}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.411439879865318}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.165293789562714}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 14.064035657081677}, "mds3": {"value": 22.11713710342999}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.388398071607884}}, "branch_attrs": {"mutations": {}}}, {"name": "VNM/OUCRU-NHTD418/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_x": {"value": 11.392566290743462}, "umap_x": {"value": -10.161671}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.776614}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.669992031222051}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.429200198844915}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.372528122623605}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 16.898558630283564}, "mds3": {"value": 21.781720516830752}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.898244222200528}}, "branch_attrs": {"mutations": {"nuc": ["G28960T"]}}}]}, {"name": "NODE_0000012", "node_attrs": {"div": 31, "num_date": {"value": 2021.4568345173934, "confidence": [2021.3616051081763, 2021.5528269499248]}}, "branch_attrs": {"mutations": {"nuc": ["C5497T"]}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 32, "num_date": {"value": 2021.5094426946098, "confidence": [2021.4316948746628, 2021.5844554087848]}}, "branch_attrs": {"mutations": {"nuc": ["G20352A"]}}, "children": [{"name": "VNM/HCMC_497/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.7082191780821, "confidence": [2021.7082191780821, 2021.7082191780821]}, "tsne_x": {"value": 11.527332079302584}, "umap_x": {"value": -10.325494}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.076275}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.670364097476819}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.528298084730201}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.228482018026915}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 17.04299881180727}, "mds3": {"value": 27.75018391956096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.713381598609402}}, "branch_attrs": {"mutations": {"nuc": ["G5816A", "G10201T", "C13458T", "C27434T"]}}}, {"name": "NODE_0000018", "node_attrs": {"div": 34, "num_date": {"value": 2021.5864714433233, "confidence": [2021.5175439597333, 2021.5988609731091]}}, "branch_attrs": {"mutations": {"nuc": ["T13019C", "C25585G"]}}, "children": [{"name": "VNM/HCMC_422/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.6013698630136, "confidence": [2021.6013698630136, 2021.6013698630136]}, "tsne_x": {"value": 11.529318469651132}, "umap_x": {"value": -10.174743}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.817449}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.098920054148234}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.446648301129204}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.680208288522287}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 16.019643308099603}, "mds3": {"value": 22.397750035709866}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 16.803440192699615}}, "branch_attrs": {"mutations": {"nuc": ["T9429C"]}}}, {"name": "VNM/HCMC_553/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.823287671233, "confidence": [2021.823287671233, 2021.823287671233]}, "tsne_x": {"value": 11.673900835751306}, "umap_x": {"value": -10.493567}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.327216}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.908998542081949}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.657760036119002}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.52361092075694}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 23.53505324076433}, "mds3": {"value": 25.00405300063053}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 14.384597465731227}}, "branch_attrs": {"mutations": {"nuc": ["T12601G", "G14371T", "C19172T", "T26546C", "T27939C"]}}}]}]}, {"name": "NODE_0000571", "node_attrs": {"div": 31, "num_date": {"value": 2021.4959250967963, "confidence": [2021.426531561564, 2021.5937837045574]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_434/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6479452054793, 2021.6479452054793]}, "tsne_x": {"value": 11.454705403499702}, "umap_x": {"value": -10.144118}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.7843895}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.254779602627512}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.432735368901374}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.004038950100275}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 14.965309237448723}, "mds3": {"value": 21.631256377060065}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 16.4746134833335}}, "branch_attrs": {"mutations": {"nuc": ["C13708T", "C26735T"]}}}, {"name": "NODE_0000665", "node_attrs": {"div": 31, "num_date": {"value": 2021.5239514267937, "confidence": [2021.4443014570395, 2021.5995112096066]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000022", "node_attrs": {"div": 32, "num_date": {"value": 2021.6059128207373, "confidence": [2021.4800753619552, 2021.7199295848761]}}, "branch_attrs": {"mutations": {"nuc": ["A25581G"]}}, "children": [{"name": "VNM/HCMC_590/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.8753424657534, "confidence": [2021.8753424657534, 2021.8753424657534]}, "tsne_x": {"value": 11.571982202002337}, "umap_x": {"value": -10.47124}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.350562}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.053283169723029}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.711928493665943}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.016456052316634}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 23.760818740355656}, "mds3": {"value": 27.806094492931912}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 18.55284225733116}}, "branch_attrs": {"mutations": {"nuc": ["C4320T", "C5869T", "A16775G", "T18536C", "C20104G", "G25352T", "G27589T"], "S": ["V1264L"]}, "labels": {"aa": "S: V1264L"}}}, {"name": "VNM/OUCRU-NHTD496/2022", "node_attrs": {"div": 38, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": 11.565776237980067}, "umap_x": {"value": -10.518691}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.391192}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.5552152043074505}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.692800597205403}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.765066106328902}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 24.45559971341149}, "mds3": {"value": 26.56873430912886}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.561690691106929}}, "branch_attrs": {"mutations": {"nuc": ["C9711T", "T11081C", "C12974T", "A13611G", "C25886G", "A27655G"]}}}]}, {"name": "NODE_0000667", "node_attrs": {"div": 31, "num_date": {"value": 2021.551319399104, "confidence": [2021.4469194008857, 2021.6063093364478]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_244/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.609589041096, "confidence": [2021.609589041096, 2021.609589041096]}, "tsne_x": {"value": 11.449399262070088}, "umap_x": {"value": -10.135365}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.766039}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.3613977427705635}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.437122480936345}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.574341481531093}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 15.284027308458484}, "mds3": {"value": 21.70716011917896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 3.30952960283828}}, "branch_attrs": {"mutations": {"nuc": ["G21800T", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}}, {"name": "NODE_0000668", "node_attrs": {"div": 31, "num_date": {"value": 2021.5616658661966, "confidence": [2021.4519623984122, 2021.6136533181088]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD110/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.7109589041097, "confidence": [2021.7109589041097, 2021.7109589041097]}, "tsne_x": {"value": 11.484961280284516}, "umap_x": {"value": -10.429775}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.185533}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.459551344358057}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.560838944879488}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.559283061983436}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 20.637656044301973}, "mds3": {"value": 26.192690437326867}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.093116673561037}}, "branch_attrs": {"mutations": {"nuc": ["C4084T", "A17755C", "C26013T", "T26621C", "C28997G"]}}}, {"name": "NODE_0000669", "node_attrs": {"div": 31, "num_date": {"value": 2021.5886561976447, "confidence": [2021.450718248034, 2021.6252196406165]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000014", "node_attrs": {"div": 34, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6422382180297, 2021.6698630136987]}}, "branch_attrs": {"mutations": {"nuc": ["C15981T", "G25354A", "C26198T"]}}, "children": [{"name": "VNM/OUCRU-NHTD77/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_x": {"value": 11.444899880917353}, "umap_x": {"value": -10.29456}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.993436}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.962530426102286}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.492247822765599}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.762897197898663}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 19.1691416360002}, "mds3": {"value": 23.53772951746674}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -6.991721531921441}}, "branch_attrs": {"mutations": {}}}, {"name": "VNM/OUCRU-NHTD47/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_x": {"value": 11.445158238308064}, "umap_x": {"value": -10.315431}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.009953}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.46140236865593}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.492922863409519}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.932751668289232}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 19.287757113315703}, "mds3": {"value": 23.48213626815372}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.094748753598895}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000671", "node_attrs": {"div": 31, "num_date": {"value": 2021.6093973753498, "confidence": [2021.4603111313065, 2021.7070414589493]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD200/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.7931506849316, "confidence": [2021.7931506849316, 2021.7931506849316]}, "tsne_x": {"value": 11.519468743504545}, "umap_x": {"value": -10.447908}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.273917}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.569199411133007}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.615058348930568}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.924875431063029}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 20.231017084661712}, "mds3": {"value": 28.549810854023733}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.491166684430071}}, "branch_attrs": {"mutations": {"nuc": ["A761C", "C1218T", "C5392T", "A11500G", "C18995T", "G28209T"]}}}, {"name": "NODE_0000673", "node_attrs": {"div": 31, "num_date": {"value": 2021.6696228297837, "confidence": [2021.513003972668, 2021.80907538325]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_628/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.8917808219178, "confidence": [2021.8917808219178, 2021.8917808219178]}, "tsne_x": {"value": 11.485764434322848}, "umap_x": {"value": -10.334213}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.04807}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.317091029558445}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.5596502073023055}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.1597592682919}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 21.26731367472346}, "mds3": {"value": 23.81544742879389}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 18.133873390565}}, "branch_attrs": {"mutations": {"nuc": ["C1473T", "G4148T", "T12879G", "C25517A", "G28079T"]}}}, {"name": "NODE_0000674", "node_attrs": {"div": 31, "num_date": {"value": 2021.7452892368094, "confidence": [2021.5626836500144, 2021.889566725291]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD495/2022", "node_attrs": {"div": 36, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": 11.486879726975893}, "umap_x": {"value": -10.342278}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.067616}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.594323279356036}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.560124353608546}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.785385301456935}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 19.56794840689656}, "mds3": {"value": 26.99186614711288}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -9.053866054902086}}, "branch_attrs": {"mutations": {"nuc": ["C1628A", "A3069G", "C16323T", "C16989T", "A27340G"]}}}, {"name": "NODE_0000675", "node_attrs": {"div": 31, "num_date": {"value": 2021.7706316889742, "confidence": [2021.5805720347705, 2021.8917808219178]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_627/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.8917808219178, "confidence": [2021.8917808219178, 2021.8917808219178]}, "tsne_x": {"value": 11.417852759266436}, "umap_x": {"value": -10.101729}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 11.739942}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.234561839990602}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.417861966506301}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.986783606775006}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 12.746705654315768}, "mds3": {"value": 21.32485146423762}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": 18.356704114323083}}, "branch_attrs": {"mutations": {}}}, {"name": "VNM/OUCRU-NHTD494/2022", "node_attrs": {"div": 37, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": 11.649974826681111}, "umap_x": {"value": -10.529906}, "Nextstrain_clade": {"value": "21I (Delta)"}, "umap_y": {"value": 12.395707}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.595378792423548}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "tsne_y": {"value": 7.639574220496643}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.899586048736197}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "division": {"value": "Vietnam"}, "mds2": {"value": 18.80871091715981}, "mds3": {"value": 30.666241010805667}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "mds_label_for_Nextstrain_clade": {"value": "1"}, "pca2": {"value": -5.526946590349356}}, "branch_attrs": {"mutations": {"nuc": ["G216A", "G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C829T", "A9079G", "G21796A", "T22227C", "A27359G"], "S": ["V222A"]}, "labels": {"aa": "S: V222A"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000077", "node_attrs": {"div": 34, "num_date": {"value": 2021.1254778178213, "confidence": [2021.0128906198065, 2021.2162511462327]}}, "branch_attrs": {"mutations": {"nuc": ["G4181T", "C6402T", "C7124T", "C8986T", "G9053T", "C10029T", "A11201G", "A11332G", "C19220T", "C27874T", "G28916T"]}}, "children": [{"name": "NODE_0000587", "node_attrs": {"div": 34, "num_date": {"value": 2021.1455944760662, "confidence": [2021.0181450584614, 2021.2424328892353]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000588", "node_attrs": {"div": 34, "num_date": {"value": 2021.1848620510689, "confidence": [2021.0167698014518, 2021.246043433925]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0313/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_x": {"value": 19.90631967431544}, "umap_x": {"value": 2.5656528}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.142622}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 63.73526879204636}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.800530956110965}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -18.357694569667338}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -2.560575294230261}, "mds3": {"value": 17.73380419357627}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.76780990770425}}, "branch_attrs": {"mutations": {"nuc": ["G28371T"]}}}, {"name": "KEN/SS312/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.3246575342466, "confidence": [2021.3246575342466, 2021.3246575342466]}, "tsne_x": {"value": 19.38649026202246}, "umap_x": {"value": 2.3300009}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.154314}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.039671967215219}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.889568217198166}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.21407049067295}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kenya"}, "mds2": {"value": -3.9162319240603263}, "mds3": {"value": 25.55129044138044}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.339751525756942}}, "branch_attrs": {"mutations": {"nuc": ["C853T", "G11335T", "C17304T", "G25396T", "C26994T"]}}}]}, {"name": "NODE_0000262", "node_attrs": {"div": 35, "num_date": {"value": 2021.2395439639592, "confidence": [2021.0592869726545, 2021.3824987140345]}}, "branch_attrs": {"mutations": {"nuc": ["G1048T"]}}, "children": [{"name": "NODE_0000263", "node_attrs": {"div": 37, "num_date": {"value": 2021.3218515755775, "confidence": [2021.180432984164, 2021.4287671232876]}}, "branch_attrs": {"mutations": {"nuc": ["G20937T", "C27527T"]}}, "children": [{"name": "NZL/21MV0476/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4287671232876, "confidence": [2021.4287671232876, 2021.4287671232876]}, "tsne_x": {"value": 19.889679511571543}, "umap_x": {"value": 1.593641}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.25957}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.639133019698545}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 11.810751769140657}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.82812733882963}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": 2.2963823630519085}, "mds3": {"value": 27.563109241365225}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5534779960919786}}, "branch_attrs": {"mutations": {"nuc": ["G19656T", "C21304A", "G21305A"]}}}, {"name": "MNG/10011837/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6835616438357, "confidence": [2021.6835616438357, 2021.6835616438357]}, "tsne_x": {"value": 20.199112620462387}, "umap_x": {"value": -0.5855311}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.940228}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.667399281099888}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 11.35449147623642}, "country": {"value": "Mongolia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.78810053357893}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Mongolia"}, "mds2": {"value": 8.635699302403303}, "mds3": {"value": 28.093039301313947}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -9.41918863865684}}, "branch_attrs": {"mutations": {"nuc": ["G8612T", "A8833C", "C11379T", "T17031C", "G18498T", "C20927A", "C22858T", "G26020T"]}}}]}, {"name": "NODE_0000680", "node_attrs": {"div": 35, "num_date": {"value": 2021.2684755789808, "confidence": [2021.0645508934062, 2021.4061708899394]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000265", "node_attrs": {"div": 41, "num_date": {"value": 2021.6615540675418, "confidence": [2021.5101306598344, 2021.74557028389]}}, "branch_attrs": {"mutations": {"nuc": ["A4864G", "T11218C", "C13378T", "C24064T", "G25855T", "G29332T"]}}, "children": [{"name": "SYC/SS4670/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.858904109589, "confidence": [2021.858904109589, 2021.858904109589]}, "tsne_x": {"value": 18.65485542097462}, "umap_x": {"value": 0.5209463}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.381788}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.9782529952663856}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 9.147255478656232}, "country": {"value": "Seychelles"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.911447402615128}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Seychelles"}, "mds2": {"value": -3.4500525335607146}, "mds3": {"value": 34.68764563494383}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.096252542247937}}, "branch_attrs": {"mutations": {"nuc": ["G16377A", "C21575T", "T28881G"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "SYC/SS3953/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_x": {"value": 18.65478359533514}, "umap_x": {"value": -0.343195}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.099052}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.6453211199181856}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 9.14189897284151}, "country": {"value": "Seychelles"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.76494824283479}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Seychelles"}, "mds2": {"value": -1.185051369308824}, "mds3": {"value": 35.141932788527534}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5259697405724693}}, "branch_attrs": {"mutations": {"nuc": ["G2741T", "G6169A", "C12085T"]}}}]}, {"name": "NODE_0000266", "node_attrs": {"div": 38, "num_date": {"value": 2021.41702516898, "confidence": [2021.254430517032, 2021.5128447326792]}}, "branch_attrs": {"mutations": {"nuc": ["A2560G", "A21987G", "G26104T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NZL/21MV0637/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5684931506848, "confidence": [2021.5684931506848, 2021.5684931506848]}, "tsne_x": {"value": 19.14588410605084}, "umap_x": {"value": 1.6650984}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.335844}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29826475077706}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 12.936052572464993}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -20.139148219668588}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -2.982690255844851}, "mds3": {"value": 28.782336870515586}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.360639596167134}}, "branch_attrs": {"mutations": {"nuc": ["G1148T", "C4815T", "A25165G", "C25836T"]}}}, {"name": "BGD/Laila_142/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5191780821917, "confidence": [2021.5191780821917, 2021.5191780821917]}, "tsne_x": {"value": 19.13333705903994}, "umap_x": {"value": 2.1037648}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.303728}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.883320834089084}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 12.60284661253664}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.75735932967404}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 1.6680211221541226}, "mds3": {"value": 25.838778553024824}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.94545228702894}}, "branch_attrs": {"mutations": {"nuc": ["G6922A", "C25587T"]}}}]}]}]}]}, {"name": "NODE_0000078", "node_attrs": {"div": 35, "num_date": {"value": 2021.1413056448025, "confidence": [2021.071202435722, 2021.2271324905264]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NODE_0000079", "node_attrs": {"div": 36, "num_date": {"value": 2021.1700041556576, "confidence": [2021.0927882449853, 2021.2361646080192]}}, "branch_attrs": {"mutations": {"nuc": ["C21846T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}, "children": [{"name": "IND/hospital_2_166/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.2835616438356, "confidence": [2021.2835616438356, 2021.2835616438356]}, "tsne_x": {"value": 19.78705354195689}, "umap_x": {"value": 1.804959}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.025892}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 31.411710830430497}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.019537834154022}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -26.64653717742535}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "India"}, "mds2": {"value": -0.5763348518402346}, "mds3": {"value": 22.32504786404768}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -1.80388825962188}}, "branch_attrs": {"mutations": {"nuc": ["A691G", "A19298G", "C21933T", "C27657T", "G28346A"], "S": ["T124I"]}, "labels": {"aa": "S: T124I"}}}, {"name": "NODE_0000082", "node_attrs": {"div": 37, "num_date": {"value": 2021.2418508870992, "confidence": [2021.1266191165546, 2021.4081718642778]}}, "branch_attrs": {"mutations": {"nuc": ["C22326T"], "S": ["S255F"]}, "labels": {"aa": "S: S255F"}}, "children": [{"name": "EGY/CCHE57357_W4_A059/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_x": {"value": 18.388806947285744}, "umap_x": {"value": 0.06295697}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.229752}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.6668525205067635}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.106"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.72289979209926}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.977052865597564}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Egypt"}, "mds2": {"value": 4.604063392130063}, "mds3": {"value": 19.619254125293423}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -19.687640425734354}}, "branch_attrs": {"mutations": {"nuc": ["G8236T", "C9811T", "C15601T", "G18318T", "G19333T", "-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "G22051T", "C25452T", "T26331C", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A", "G28395T"], "S": ["X156E", "-157F", "X158R", "X1274*"]}, "labels": {"aa": "S: X156E, -157F, X158R, X1274*"}}}, {"name": "BHR/21342702899/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.804109589041, "confidence": [2021.804109589041, 2021.804109589041]}, "tsne_x": {"value": 23.16807204233309}, "umap_x": {"value": -0.95405334}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.873869}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.02796695582551}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.983822234066553}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -30.84864883395373}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -12.7697345354334}, "mds3": {"value": 27.943210663554044}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.931773553612972}}, "branch_attrs": {"mutations": {"nuc": ["A691G", "C1549T", "A2903G", "C6040T", "C14790T", "G17721T", "A19068G", "A22305C", "A22862G", "G25538T", "C27654T"], "S": ["Y248S", "I434V"]}, "labels": {"aa": "S: Y248S, I434V"}}}]}, {"name": "NODE_0000093", "node_attrs": {"div": 37, "num_date": {"value": 2021.206467788472, "confidence": [2021.139561962476, 2021.2425895998538]}}, "branch_attrs": {"mutations": {"nuc": ["C23557T"]}}, "children": [{"name": "IND/hospital_2_120/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_x": {"value": 19.954894416208504}, "umap_x": {"value": 2.1195042}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.945972}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 20.994688338524035}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.07406935540406}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -25.532024531044684}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "India"}, "mds2": {"value": -1.2370827308865704}, "mds3": {"value": 22.02464739531792}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.2490547683323365}}, "branch_attrs": {"mutations": {"nuc": ["G17278T", "C21216T", "C22735T"]}}}, {"name": "IMS-10087-CVDP-884CB191-90B2-4DC2-8082-C1870D0D70E7", "node_attrs": {"div": 43, "num_date": {"value": 2021.7904109589042, "confidence": [2021.7904109589042, 2021.7904109589042]}, "tsne_x": {"value": 19.731843435835923}, "umap_x": {"value": 1.3785416}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.235968}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.566265050911201}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.121"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.70503217847865}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.10750893087391}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -7.859709191368829}, "mds3": {"value": 22.58188352979981}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.6023526655655764}}, "branch_attrs": {"mutations": {"nuc": ["A4269G", "C13168T", "C16173T", "G24794T", "G25996T", "G28396A"], "S": ["A1078S"]}, "labels": {"aa": "S: A1078S"}}}]}, {"name": "NODE_0000598", "node_attrs": {"div": 36, "num_date": {"value": 2021.1915398593587, "confidence": [2021.0632687252992, 2021.3620443911036]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000096", "node_attrs": {"div": 40, "num_date": {"value": 2021.4145229202688, "confidence": [2021.3487717789164, 2021.4808219178083]}}, "branch_attrs": {"mutations": {"nuc": ["C14925T", "A21137G", "A24110C", "A25439C"], "S": ["I850L"]}, "labels": {"aa": "S: I850L"}}, "children": [{"name": "UZB/UZB-402/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4808219178083, "confidence": [2021.4808219178083, 2021.4808219178083]}, "tsne_x": {"value": 19.84040402732056}, "umap_x": {"value": 1.7997124}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.091194}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.680347161865944}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.126"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.148553477515655}, "country": {"value": "Uzbekistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.915055646721267}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Tashkent"}, "mds2": {"value": -1.7478222905874845}, "mds3": {"value": 21.51324480591505}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -2.756294569557093}}, "branch_attrs": {"mutations": {"nuc": ["C884T", "G6446T"]}}}, {"name": "NODE_0000727", "node_attrs": {"div": 40, "num_date": {"value": 2021.4944753738307, "confidence": [2021.3563280825247, 2021.5989532493918]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/5902081008/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8917808219178, "confidence": [2021.8917808219178, 2021.8917808219178]}, "tsne_x": {"value": 19.294153666547007}, "umap_x": {"value": -0.2706323}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.061886}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.4959552079962235}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.126"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.651892257782334}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.78876711679844}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -11.454232518016674}, "mds3": {"value": 34.33150023786698}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.599329163993475}}, "branch_attrs": {"mutations": {"nuc": ["T1871G", "C5884T", "A6659G", "C14708T", "C24844T", "C26527T", "G28541T"]}}}, {"name": "IMS-10215-CVDP-C3055A64-3C94-4E40-A752-D28DFBD7C343", "node_attrs": {"div": 49, "num_date": {"value": 2021.8616438356164, "confidence": [2021.8616438356164, 2021.8616438356164]}, "tsne_x": {"value": 22.43160683425946}, "umap_x": {"value": -0.1002663}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.269556}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.7350314659840235}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.126"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.79669370451244}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.212367412289016}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -11.082956919764788}, "mds3": {"value": 20.16599844812074}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 14.615995501260684}}, "branch_attrs": {"mutations": {"nuc": ["C5512T", "T6402C", "C11074T", "C13862T", "A13953G", "A16797G", "T16896C", "G21987A", "-22032T", "-22033C", "-22034A", "G28727A"], "S": ["G142D", "-157X", "X158R"]}, "labels": {"aa": "S: G142D, -157X, X158R"}}}]}]}, {"name": "NODE_0000728", "node_attrs": {"div": 36, "num_date": {"value": 2021.2027424791606, "confidence": [2021.0652087920773, 2021.3767092784599]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000090", "node_attrs": {"div": 37, "num_date": {"value": 2021.2608975011724, "confidence": [2021.1057781961304, 2021.4959365922957]}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}, "children": [{"name": "BGD/Laila_225/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.535616438356, "confidence": [2021.535616438356, 2021.535616438356]}, "tsne_x": {"value": 19.552502194153327}, "umap_x": {"value": 1.5499382}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.405632}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.4624772311816385}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.895106200002187}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.21323849062148}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 1.577061607920284}, "mds3": {"value": 21.6137638836896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.7197723785182415}}, "branch_attrs": {"mutations": {"nuc": ["C593T", "T1702C", "C2062T", "C3165T", "A25454G", "C27389T"]}}}, {"name": "IMS-10150-CVDP-7456DFE1-9A75-47EF-9DFC-EF162E7266C2", "node_attrs": {"div": 46, "num_date": {"value": 2021.727397260274, "confidence": [2021.727397260274, 2021.727397260274]}, "tsne_x": {"value": 21.495666493598435}, "umap_x": {"value": -0.6234664}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.208029}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 29.97103434543473}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 11.77245243207474}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -36.30311845899014}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -0.5432582923442094}, "mds3": {"value": 20.86323303764249}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.970955798548173}}, "branch_attrs": {"mutations": {"nuc": ["C6347T", "G7360T", "C7851T", "G14209T", "G18318T", "T21992-", "A21993-", "T21994-", "C22000T", "G24348C", "A28097C", "G29810T"], "S": ["Y144-", "S929T"]}, "labels": {"aa": "S: Y144-, S929T"}}}]}, {"name": "NODE_0000730", "node_attrs": {"div": 36, "num_date": {"value": 2021.23953951819, "confidence": [2021.0608734827606, 2021.3889114870005]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000116", "node_attrs": {"div": 37, "num_date": {"value": 2021.3211835370714, "confidence": [2021.0875190493832, 2021.492767903326]}}, "branch_attrs": {"mutations": {"nuc": ["C15240T"]}}, "children": [{"name": "USA/IA-CDC-ASC210285461/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7082191780821, "confidence": [2021.7082191780821, 2021.7082191780821]}, "tsne_x": {"value": 20.384117563946592}, "umap_x": {"value": 1.3815186}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.152569}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 51.91754576640679}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.113"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.710337055759515}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -26.931125899641906}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Iowa"}, "mds2": {"value": -7.3048500397518}, "mds3": {"value": 22.41009534712037}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.2383254649590154}}, "branch_attrs": {"mutations": {"nuc": ["G8861A", "C9165T", "C9967T", "A10323G", "C12559T", "A12772G"]}}}, {"name": "NODE_0000117", "node_attrs": {"div": 39, "num_date": {"value": 2021.4117843366666, "confidence": [2021.1451537540322, 2021.5734881523263]}}, "branch_attrs": {"mutations": {"nuc": ["C9559T", "T28007C"]}}, "children": [{"name": "NODE_0000118", "node_attrs": {"div": 41, "num_date": {"value": 2021.5104250993793, "confidence": [2021.3387663441297, 2021.6541417079509]}}, "branch_attrs": {"mutations": {"nuc": ["G17122T", "G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000120", "node_attrs": {"div": 43, "num_date": {"value": 2021.6428522637038, "confidence": [2021.4299775928405, 2021.7316305967681]}}, "branch_attrs": {"mutations": {"nuc": ["A27985T", "C28432T"]}}, "children": [{"name": "USA/NV-CDC-LC0433866/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.9356164383562, "confidence": [2021.9356164383562, 2021.9356164383562]}, "tsne_x": {"value": 21.598826497258887}, "umap_x": {"value": -0.37070394}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.072483}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.990850160681839}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.860224062144349}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.803051334017727}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nevada"}, "mds2": {"value": -12.572671136892902}, "mds3": {"value": 28.408265680806977}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 10.47955469018502}}, "branch_attrs": {"mutations": {"nuc": ["A7766G", "C13384T", "C21742T", "G22936A"]}}}, {"name": "USA/CO-CDC-MMB11674519/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.8753424657534, "confidence": [2021.8753424657534, 2021.8753424657534]}, "tsne_x": {"value": 21.694903472155}, "umap_x": {"value": -1.4627014}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.611858}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.894198137569147}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.815307554259617}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.49302842072661}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Colorado"}, "mds2": {"value": -14.550548613474293}, "mds3": {"value": 32.21028330672817}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -1.7140735387010555}}, "branch_attrs": {"mutations": {"nuc": ["A810G", "C3903T", "C5812T", "G11417T", "G19684A", "C21575T", "C25904T", "G28917C"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}, {"name": "NODE_0000735", "node_attrs": {"div": 41, "num_date": {"value": 2021.52940589153, "confidence": [2021.346110915941, 2021.6595836951396]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NM-CDC-LC0408957/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.9, "confidence": [2021.9, 2021.9]}, "tsne_x": {"value": 21.487841550437413}, "umap_x": {"value": 1.138444}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.19732}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.221088075386015}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.903598938892127}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.62273751127843}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Mexico"}, "mds2": {"value": -9.382379405866471}, "mds3": {"value": 26.46978245633048}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.952058696243646}}, "branch_attrs": {"mutations": {"nuc": ["A2903G", "G28851T", "G29151T"]}}}, {"name": "USA/NC-CDC-LC0260400/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.686301369863, "confidence": [2021.686301369863, 2021.686301369863]}, "tsne_x": {"value": 21.59250293333205}, "umap_x": {"value": -0.5002139}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.994823}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.692860357531228}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.860549569258112}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -34.85806392078284}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "North Carolina"}, "mds2": {"value": -7.3214790695942495}, "mds3": {"value": 22.114555317771995}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 24.963633411514607}}, "branch_attrs": {"mutations": {"nuc": ["C350T", "C2724T", "C10335T", "C10537T", "C16049T", "T17208C", "G17749T", "A20262G"]}}}]}]}, {"name": "NODE_0000121", "node_attrs": {"div": 42, "num_date": {"value": 2021.4962491163253, "confidence": [2021.3323591606927, 2021.6426816340777]}}, "branch_attrs": {"mutations": {"nuc": ["C925T", "C9474T", "C25460T"]}}, "children": [{"name": "NODE_0000125", "node_attrs": {"div": 43, "num_date": {"value": 2021.5298166674816, "confidence": [2021.3868238859245, 2021.668179824877]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "BRA/SC-NVBS7864GENOV45616634362/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_x": {"value": 21.560938225597745}, "umap_x": {"value": -1.4041972}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.671917}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.9689715928226725}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.63196188733242}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.129590778315823}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -17.649930900115642}, "mds3": {"value": 33.31993749257233}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.35338845949981}}, "branch_attrs": {"mutations": {"nuc": ["G3892T", "C6027T", "C7528T", "G13249A", "G24301T", "C25096T", "C28045T", "G28882T"], "S": ["Q913H"]}, "labels": {"aa": "S: Q913H"}}}, {"name": "BRA/PR-NVBS8495GENOV828220847829/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.7602739726028, "confidence": [2021.7602739726028, 2021.7602739726028]}, "tsne_x": {"value": 21.554655698607256}, "umap_x": {"value": -1.187554}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.784073}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.179466005034489}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.667002917044972}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.063635686932056}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -15.342501149324557}, "mds3": {"value": 29.85222497567749}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.158097875113329}}, "branch_attrs": {"mutations": {"nuc": ["C7267T", "A8757G", "A11595G", "T18435C", "A21137G", "T26773C"]}}}]}, {"name": "NODE_0000740", "node_attrs": {"div": 42, "num_date": {"value": 2021.5090621766312, "confidence": [2021.33888902071, 2021.647379474546]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SC-NVBS6816GENOV045616312703/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.7, "confidence": [2021.7, 2021.7]}, "tsne_x": {"value": 21.55626896669393}, "umap_x": {"value": -1.3602283}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.726753}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.036185104314071}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.664011995369206}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.42285324514017}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -14.828329108564647}, "mds3": {"value": 28.53585826737645}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.579723902014037}}, "branch_attrs": {"mutations": {"nuc": ["C1514T", "A1795T", "A2512G", "C6330T", "C8814T", "C12534T", "T18384C", "A29697G"]}}}, {"name": "NODE_0000741", "node_attrs": {"div": 42, "num_date": {"value": 2021.551107634362, "confidence": [2021.3378872618855, 2021.649956341306]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS7184GENOV130639711876/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.6972602739727, "confidence": [2021.6972602739727, 2021.6972602739727]}, "tsne_x": {"value": 21.54042932134736}, "umap_x": {"value": 0.049616758}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.197395}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.196939618865952}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.703427975405967}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.95229334025105}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -14.718009337939762}, "mds3": {"value": 27.26356806924408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.163828409382008}}, "branch_attrs": {"mutations": {"nuc": ["C4921T", "T13333C", "G24328T", "G25361A", "T29402G"], "S": ["L922F", "G1267R"]}, "labels": {"aa": "S: L922F, G1267R"}}}, {"name": "NODE_0000742", "node_attrs": {"div": 42, "num_date": {"value": 2021.5903258583915, "confidence": [2021.3390762556044, 2021.6795069577356]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS11964GENOV828546822173/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_x": {"value": 21.54807936023074}, "umap_x": {"value": -1.2703365}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.74204}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.461165309174879}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.662388455050593}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.302211896628947}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -16.195611141810037}, "mds3": {"value": 34.23355420366572}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.237749986735931}}, "branch_attrs": {"mutations": {"nuc": ["C723T", "A819G", "C1263T", "C13694T", "A19188T", "A21336G", "C28603T", "A29570C"]}}}, {"name": "BRA/PR-NVBS10019GENOV828350671608/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8397260273973, "confidence": [2021.8397260273973, 2021.8397260273973]}, "tsne_x": {"value": 21.537924102073543}, "umap_x": {"value": -0.20251404}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.051544}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.622416266132107}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.70036778070042}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.033374256629585}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -13.641925450522402}, "mds3": {"value": 31.716936427683407}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.997100051701324}}, "branch_attrs": {"mutations": {"nuc": ["T592C", "C5314T", "C6040T", "C16092T", "C24370T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000743", "node_attrs": {"div": 36, "num_date": {"value": 2021.2464682589525, "confidence": [2021.0631383395441, 2021.4080836359954]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000744", "node_attrs": {"div": 36, "num_date": {"value": 2021.258194498138, "confidence": [2021.0642104277229, 2021.4177184236946]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000098", "node_attrs": {"div": 39, "num_date": {"value": 2021.4142049108304, "confidence": [2021.2421894355107, 2021.5295933936145]}}, "branch_attrs": {"mutations": {"nuc": ["A11595G", "A14836G", "C27549T"]}}, "children": [{"name": "NODE_0000100", "node_attrs": {"div": 40, "num_date": {"value": 2021.508799317785, "confidence": [2021.3494664264542, 2021.5383561643835]}}, "branch_attrs": {"mutations": {"nuc": ["C19017T"]}}, "children": [{"name": "NGA/CV2513/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5383561643835, "confidence": [2021.5383561643835, 2021.5383561643835]}, "tsne_x": {"value": 19.571667319790947}, "umap_x": {"value": 2.259303}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.189863}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.678875617349068}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.109"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.55491377940966}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.414009865695338}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": -2.9413351076428293}, "mds3": {"value": 24.65312082272149}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.736593950232617}}, "branch_attrs": {"mutations": {}}}, {"name": "NGA/CV2519/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5876712328768, "confidence": [2021.5876712328768, 2021.5876712328768]}, "tsne_x": {"value": 19.30677908738478}, "umap_x": {"value": 0.577504}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.264524}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.259733392330196}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.109"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.999723768224928}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.84483466469108}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": -10.243356516970865}, "mds3": {"value": 27.932156281454777}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.56265808621482}}, "branch_attrs": {"mutations": {"nuc": ["C10376T", "C20132T", "G28541T", "A29526T"]}}}]}, {"name": "NODE_0000747", "node_attrs": {"div": 39, "num_date": {"value": 2021.4241705586533, "confidence": [2021.252257716608, 2021.5917226486708]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV3417/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.7027397260274, "confidence": [2021.7027397260274, 2021.7027397260274]}, "tsne_x": {"value": 23.76257675039648}, "umap_x": {"value": -1.0931864}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.762878}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.087157233020479}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.109"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.989098761428972}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.12616374828545}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": -3.8968672531670094}, "mds3": {"value": 41.46242712998517}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.615604077980168}}, "branch_attrs": {"mutations": {"nuc": ["G3431A", "C5544T", "C7800T", "T16908C", "A18399G", "C19170T", "G20578T", "C21614T", "T21846C", "A26019G", "G26428T", "C26611T"], "S": ["L18F", "I95T"]}, "labels": {"aa": "S: L18F, I95T"}}}, {"name": "NODE_0000101", "node_attrs": {"div": 40, "num_date": {"value": 2021.5121239084397, "confidence": [2021.339647119887, 2021.6517388971854]}}, "branch_attrs": {"mutations": {"nuc": ["G27517A"]}}, "children": [{"name": "NGA/CV4799/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_x": {"value": 19.47168811018025}, "umap_x": {"value": 0.3199448}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.1823}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.799777087670564}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.109"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.125355888443114}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -28.501281911079243}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": -0.2516163161649783}, "mds3": {"value": 27.338673971794208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.610175160256606}}, "branch_attrs": {"mutations": {"nuc": ["G6176A", "A21137G", "G21987A", "C25587T", "G29554A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}}, {"name": "OX940455", "node_attrs": {"div": 48, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_x": {"value": 19.02567690811624}, "umap_x": {"value": -0.3836294}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.138939}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.704504414383523}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.109"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.272663947005448}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.713371632931}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -8.888395625681474}, "mds3": {"value": 35.21913692964154}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.860521712039394}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "C2189T", "C5392T", "C7948T", "C8730T", "C21614T", "C29670T", "G29705T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}]}]}]}, {"name": "NODE_0000749", "node_attrs": {"div": 37, "num_date": {"value": 2021.2830882985713, "confidence": [2021.0978667133354, 2021.427996708654]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000115", "node_attrs": {"div": 44, "num_date": {"value": 2021.4174006902444, "confidence": [2021.3500373762063, 2021.4342465753425]}}, "branch_attrs": {"mutations": {"nuc": ["A708G", "C1825T", "G16914T", "T17748A", "C25810T", "G26428T", "C26873T"]}}, "children": [{"name": "THA/CONI-0792/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.4342465753425, "confidence": [2021.4342465753425, 2021.4342465753425]}, "tsne_x": {"value": 23.35127691494286}, "umap_x": {"value": 0.37989986}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.239965}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.926198584229681}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.85"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.044651624014824}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.510639058384456}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bangkok"}, "mds2": {"value": -4.078751113361898}, "mds3": {"value": 25.7022023088461}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.81633729666324}}, "branch_attrs": {"mutations": {"nuc": ["C27406T"]}}}, {"name": "THA/AFRIMS-COV6950/2021", "node_attrs": {"div": 53, "num_date": {"value": 2021.713698630137, "confidence": [2021.713698630137, 2021.713698630137]}, "tsne_x": {"value": 23.58124948016879}, "umap_x": {"value": -1.5173427}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.614136}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.601604920355958}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.85"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.110043297732584}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.356813436699767}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kamphaeng Phet"}, "mds2": {"value": -16.920745785368325}, "mds3": {"value": 34.448329966016004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.9837375581742815}}, "branch_attrs": {"mutations": {"nuc": ["A4473G", "C6828T", "C14571T", "C17285T", "A21987G", "G22813T", "G22992T", "G23868T", "G24356A"], "S": ["D142G", "K417N", "S477I", "G769V", "G932S"]}, "labels": {"aa": "S: D142G, K417N, S477I, G769V, G932S"}}}]}, {"name": "NODE_0000104", "node_attrs": {"div": 38, "num_date": {"value": 2021.412168185439, "confidence": [2021.1111827658563, 2021.5665262652237]}}, "branch_attrs": {"mutations": {"nuc": ["G28378T"]}}, "children": [{"name": "BRA/SP-NVBS10664GENOV828364359967/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8479452054794, "confidence": [2021.8479452054794, 2021.8479452054794]}, "tsne_x": {"value": 19.093349003415973}, "umap_x": {"value": -0.4342497}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.02991}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.492556020849961}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.624926907572286}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.572450620128784}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.7179254554013823}, "mds3": {"value": 26.263033202298097}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.51614412429008}}, "branch_attrs": {"mutations": {"nuc": ["T973C", "C4534T", "C10977T", "G11083T", "G14186T", "C14235T", "C19637T", "G19999T", "C27688T"]}}}, {"name": "NODE_0000105", "node_attrs": {"div": 40, "num_date": {"value": 2021.4995545016188, "confidence": [2021.2110504414927, 2021.6605018381908]}}, "branch_attrs": {"mutations": {"nuc": ["G25538T", "C26054A"]}}, "children": [{"name": "NODE_0000106", "node_attrs": {"div": 45, "num_date": {"value": 2021.6888259234022, "confidence": [2021.6017347977802, 2021.768493150685]}}, "branch_attrs": {"mutations": {"nuc": ["G242A", "T7816C", "A19445G", "G23608T", "C24138A"], "S": ["T859N"]}, "labels": {"aa": "S: T859N"}}, "children": [{"name": "DJI/NAMRU3_E303/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.768493150685, "confidence": [2021.768493150685, 2021.768493150685]}, "tsne_x": {"value": 20.438174480454474}, "umap_x": {"value": -0.24540071}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.06645}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.810110136005124}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.127.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.334466025269354}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.90340536274315}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Djibouti"}, "mds2": {"value": -8.152098318782413}, "mds3": {"value": 34.53223398089799}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5968029008746578}}, "branch_attrs": {"mutations": {"nuc": ["T4634C", "T7049C"]}}}, {"name": "DJI/NAMRU3_F397/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.795890410959, "confidence": [2021.795890410959, 2021.795890410959]}, "tsne_x": {"value": 20.440539350681668}, "umap_x": {"value": -0.3586251}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.0557}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.803677876264505}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.127.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 9.333399803568952}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.067541017782787}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Djibouti"}, "mds2": {"value": -10.212663804226114}, "mds3": {"value": 32.20198461996384}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.599141540385837}}, "branch_attrs": {"mutations": {"nuc": ["G2659T", "T27832C"]}}}]}, {"name": "NODE_0000107", "node_attrs": {"div": 46, "num_date": {"value": 2021.745515031351, "confidence": [2021.5807868569136, 2021.818008376698]}}, "branch_attrs": {"mutations": {"nuc": ["C1420T", "G6622A", "G14511C", "G18255T", "C21057T", "T25518C"]}}, "children": [{"name": "LBY/86574a-37/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_x": {"value": 19.99077152314421}, "umap_x": {"value": -1.0140277}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.84266}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 14.585460825695776}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.127"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 8.732085456622018}, "country": {"value": "Libya"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -17.863357620044397}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Tripoli"}, "mds2": {"value": -9.157331610990529}, "mds3": {"value": 39.26945165865653}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.416732152439067}}, "branch_attrs": {"mutations": {"nuc": ["G2447T", "G22592T", "G23236T", "G25543T", "C27389T"], "S": ["A344S", "K558N"]}, "labels": {"aa": "S: A344S, K558N"}}}, {"name": "OV126985", "node_attrs": {"div": 49, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_x": {"value": 20.01848292579096}, "umap_x": {"value": -1.2061715}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.805794}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.8778071659218325}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.127"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 8.752371717774766}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -36.73995348633658}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -6.214217627181642}, "mds3": {"value": 25.207501012485853}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.6027881578491197}}, "branch_attrs": {"mutations": {"nuc": ["C14478T", "G23282T", "C24370T"], "S": ["D574Y"]}, "labels": {"aa": "S: D574Y"}}}]}]}]}]}]}, {"name": "NODE_0000755", "node_attrs": {"div": 36, "num_date": {"value": 2021.2639905405083, "confidence": [2021.0644143349887, 2021.5249880093436]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000756", "node_attrs": {"div": 36, "num_date": {"value": 2021.3206278077732, "confidence": [2020.9643442436843, 2021.5616236288827]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000080", "node_attrs": {"div": 41, "num_date": {"value": 2021.606358731087, "confidence": [2021.4519576890748, 2021.6616438356164]}}, "branch_attrs": {"mutations": {"nuc": ["T2318A", "A9889G", "C25452A", "G25455C", "T28891G"]}}, "children": [{"name": "BHR/21921819449/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.831506849315, "confidence": [2021.831506849315, 2021.831506849315]}, "tsne_x": {"value": 18.423031749558504}, "umap_x": {"value": -0.09442434}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.130096}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 16.583866727261274}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.404310787859668}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.735168154963493}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -9.72177476273712}, "mds3": {"value": 33.99158741245774}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -9.415379669940124}}, "branch_attrs": {"mutations": {"nuc": ["C20T", "T179C", "G626T", "G1747A", "A3327G", "C21721T"]}}}, {"name": "EGY/CCHE57357_W4_A066/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_x": {"value": 18.56650359008077}, "umap_x": {"value": 1.7396178}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.414223}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.794494755728483}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.26041815243895}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.105354876754586}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Egypt"}, "mds2": {"value": -8.357543246328758}, "mds3": {"value": 27.08588026247065}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -19.71247257111002}}, "branch_attrs": {"mutations": {"nuc": ["-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "C26936T", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A"], "S": ["X156E", "-157F", "X158R", "X1274*"]}, "labels": {"aa": "S: X156E, -157F, X158R, X1274*"}}}]}, {"name": "NODE_0000758", "node_attrs": {"div": 36, "num_date": {"value": 2021.3471329001595, "confidence": [2020.9667749542434, 2021.5696170420474]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/921385685_S196_L001/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6534246575343, "confidence": [2021.6534246575343, 2021.6534246575343]}, "tsne_x": {"value": 18.944717104161185}, "umap_x": {"value": 0.2804847}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.233704}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.704856628673164}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.986595110167666}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.582658508610777}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -10.792788668883484}, "mds3": {"value": 30.524673604064525}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -12.573021680453616}}, "branch_attrs": {"mutations": {"nuc": ["C66T", "C751T", "C7713T", "T8410C", "C10525T", "G20679T", "C23410T", "C23937T", "G28086T"], "S": ["P792L"]}, "labels": {"aa": "S: P792L"}}}, {"name": "NODE_0000759", "node_attrs": {"div": 36, "num_date": {"value": 2021.4139603639792, "confidence": [2020.9661591078664, 2021.5888304315756]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921635746_S86_L001/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.7493150684932, "confidence": [2021.7493150684932, 2021.7493150684932]}, "tsne_x": {"value": 23.18934466869717}, "umap_x": {"value": -0.46336865}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.099224}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 11.52277026177454}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.259682236923798}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.435205429670603}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -11.357341906837506}, "mds3": {"value": 26.5009561707399}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -9.560932505102596}}, "branch_attrs": {"mutations": {"nuc": ["C6555T", "C8980T", "C9746T", "A10691G", "C12534T", "A15174G", "T21408C", "C25521T", "C29095T", "G29260T"]}}}, {"name": "NODE_0000762", "node_attrs": {"div": 36, "num_date": {"value": 2021.4188802286199, "confidence": [2020.9699457167512, 2021.6104671686387]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921803456_S72_L001/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.817808219178, "confidence": [2021.817808219178, 2021.817808219178]}, "tsne_x": {"value": 19.41302393602117}, "umap_x": {"value": 0.74054325}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.323421}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 30.45999322243005}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.112"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.55407448729611}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -21.067524345459507}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -8.160669110247476}, "mds3": {"value": 30.68338869291605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.292367233906322}}, "branch_attrs": {"mutations": {"nuc": ["G368A", "C1267T", "A3997T", "C21622T", "T22618C", "G25647T", "G29422T", "A29565G"]}}}, {"name": "NODE_0000763", "node_attrs": {"div": 36, "num_date": {"value": 2021.509689139666, "confidence": [2020.961431546185, 2021.595565175965]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921998270/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.9027397260274, "confidence": [2021.9027397260274, 2021.9027397260274]}, "tsne_x": {"value": 23.18928694259555}, "umap_x": {"value": -0.05110665}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.178526}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.551804124271094}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.578617866640409}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.01184802539351}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": 2.6697570629396217}, "mds3": {"value": 22.12782131016831}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -11.574669947945509}}, "branch_attrs": {"mutations": {"nuc": ["C539T", "C4927T", "C8499T", "G9224A", "T15888C", "A19188G", "C20148T", "T21357C", "A24070G"]}}}, {"name": "USA/UT-UPHL-211115614606/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_x": {"value": 18.36924353108482}, "umap_x": {"value": -1.0442793}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.785128}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.204326394468145}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.085128590373932}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.11464790222815}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "USA"}, "mds2": {"value": 9.107183712200316}, "mds3": {"value": 33.77172470015859}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.03420407852883}}, "branch_attrs": {"mutations": {"nuc": ["C2061T", "C2137A", "T2974C", "T3618C", "C8092T", "A17236G", "A19002G", "C21727T", "C23758T", "G24872T", "G26814T", "G27163A", "C27389T"], "S": ["V1104L"]}, "labels": {"aa": "S: V1104L"}}}]}]}]}]}]}, {"name": "NODE_0000765", "node_attrs": {"div": 36, "num_date": {"value": 2021.2719815956268, "confidence": [2021.0660999153154, 2021.5297900974135]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/342409950/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5712328767124, "confidence": [2021.5712328767124, 2021.5712328767124]}, "tsne_x": {"value": 19.41469457335124}, "umap_x": {"value": 1.2596409}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.385437}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.181112687769665}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.521199143982768}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.74414383723304}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -10.016565641365158}, "mds3": {"value": 23.73852182581854}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.173620387607613}}, "branch_attrs": {"mutations": {"nuc": ["G4787A", "C7401T", "T9982C", "C10156T", "A20465G", "C21145T", "T21921C", "G28461A"], "S": ["V120A"]}, "labels": {"aa": "S: V120A"}}}, {"name": "NODE_0000108", "node_attrs": {"div": 46, "num_date": {"value": 2021.5871192116015, "confidence": [2021.405461551449, 2021.700886248497]}}, "branch_attrs": {"mutations": {"nuc": ["C2106T", "G8017T", "G9441T", "G18255T", "G23593C", "C25355T", "G26109A", "C26681T", "G27014T", "C28961T"], "S": ["Q677H", "L1265F"]}, "labels": {"aa": "S: Q677H, L1265F"}}, "children": [{"name": "BRA/SP-NVBS8170GENOV828255370156/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_x": {"value": 16.48265799417255}, "umap_x": {"value": -0.9293389}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.857365}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 35.37603364272617}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.87223901577416}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -35.90736090248462}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 6.49289655717145}, "mds3": {"value": 23.57020025307255}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.973303724105256}}, "branch_attrs": {"mutations": {"nuc": ["C5544A", "G23282T", "T27851C"], "S": ["D574Y"]}, "labels": {"aa": "S: D574Y"}}}, {"name": "NODE_0000109", "node_attrs": {"div": 47, "num_date": {"value": 2021.6077686620974, "confidence": [2021.4414098044908, 2021.719149400877]}}, "branch_attrs": {"mutations": {"nuc": ["C22498T"]}}, "children": [{"name": "BRA/SP-NVBS8068GENOV828226273837/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.7630136986302, "confidence": [2021.7630136986302, 2021.7630136986302]}, "tsne_x": {"value": 16.478327966049704}, "umap_x": {"value": -1.211145}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.70075}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.986153168239082}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.875697360016144}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.89599417739828}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -12.586410767283365}, "mds3": {"value": 38.85130054154485}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.506333669326742}}, "branch_attrs": {"mutations": {"nuc": ["T10153C", "A14502G", "A20288C"]}}}, {"name": "NODE_0000768", "node_attrs": {"div": 47, "num_date": {"value": 2021.6423714820291, "confidence": [2021.4382022100779, 2021.7134322400561]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS7901GENOV828242543808/2021", "node_attrs": {"div": 53, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_x": {"value": 16.486972244620816}, "umap_x": {"value": -1.468909}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.65031}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.599186807913752}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.870394850105978}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -40.464781313756845}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 1.2367714188179526}, "mds3": {"value": 24.39398675622684}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.066230483984656}}, "branch_attrs": {"mutations": {"nuc": ["T2106C", "C2595T", "T17220C", "G24173T", "G25599T", "C27573T"], "S": ["A871S"]}, "labels": {"aa": "S: A871S"}}}, {"name": "NODE_0000111", "node_attrs": {"div": 48, "num_date": {"value": 2021.670452843855, "confidence": [2021.489086295551, 2021.7987841863944]}}, "branch_attrs": {"mutations": {"nuc": ["C28657T"]}}, "children": [{"name": "NODE_0000771", "node_attrs": {"div": 48, "num_date": {"value": 2021.6873814231997, "confidence": [2021.4913701020453, 2021.8068335374608]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS11621GENOV130641108558/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9465753424658, "confidence": [2021.9465753424658, 2021.9465753424658]}, "tsne_x": {"value": 16.470282542983014}, "umap_x": {"value": -1.3026296}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.746294}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.134528161104703}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.886333003766309}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.25358805402105}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -15.83730975870014}, "mds3": {"value": 44.16261707207676}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.7587583000474094}}, "branch_attrs": {"mutations": {"nuc": ["G6463T", "T10031G", "C12400T", "G13982A", "T19731C", "G21618T", "G21987A", "G27289-", "A27290-", "T27291-", "T27292-", "C28344A", "C28748T"], "S": ["R19I", "G142D"]}, "labels": {"aa": "S: R19I, G142D"}}}, {"name": "BRA/SP-NVBS11387GENOV500278688547/2021", "node_attrs": {"div": 54, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_x": {"value": 16.475954133751145}, "umap_x": {"value": -1.3251277}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.72619}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.339547888697436}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.885192948585903}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.95030518200924}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -15.287810737773786}, "mds3": {"value": 41.25716881204264}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.000170384641867}}, "branch_attrs": {"mutations": {"nuc": ["G10688A", "A18473G", "G19563A", "T20631C", "A23592T", "G27556T"], "S": ["H677L"]}, "labels": {"aa": "S: H677L"}}}]}, {"name": "NODE_0000113", "node_attrs": {"div": 49, "num_date": {"value": 2021.7459264243473, "confidence": [2021.5691607025503, 2021.8160491197184]}}, "branch_attrs": {"mutations": {"nuc": ["G17019T"]}}, "children": [{"name": "BRA/SP-NVBS10411GENOV828384367652/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.858904109589, "confidence": [2021.858904109589, 2021.858904109589]}, "tsne_x": {"value": 16.473817867122246}, "umap_x": {"value": -1.3096675}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.682594}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.745473647054727}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.87849964887436}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.1739853866517}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -13.330319683741529}, "mds3": {"value": 39.857475676608026}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.502124892572803}}, "branch_attrs": {"mutations": {"nuc": ["C4891T", "C23114T"]}}}, {"name": "BRA/SP-NVBS11331GENOV828479624936/2021", "node_attrs": {"div": 54, "num_date": {"value": 2021.9191780821918, "confidence": [2021.9191780821918, 2021.9191780821918]}, "tsne_x": {"value": 16.47409295183888}, "umap_x": {"value": -1.3987617}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.662943}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.295520454866162}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.88579783492014}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.30337965305934}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -15.785724704498136}, "mds3": {"value": 40.6470155193913}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.467895504218207}}, "branch_attrs": {"mutations": {"nuc": ["C3768T", "G7312T", "T12720C", "G19563A", "T26765C"]}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000773", "node_attrs": {"div": 35, "num_date": {"value": 2021.176639447879, "confidence": [2021.0358904711143, 2021.3522512799036]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000160", "node_attrs": {"div": 37, "num_date": {"value": 2021.32311323224, "confidence": [2021.125621490727, 2021.4602351926685]}}, "branch_attrs": {"mutations": {"nuc": ["T13216C", "C15240T"]}}, "children": [{"name": "BRA/PR-NVBS7548GENOV828213185372/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7602739726028, "confidence": [2021.7602739726028, 2021.7602739726028]}, "tsne_x": {"value": 22.986437774890767}, "umap_x": {"value": 1.4472626}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.402422}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.634751891946312}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.598421435080922}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.696382016659804}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.8581121285414343}, "mds3": {"value": 29.43148296446161}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.07491103037568}}, "branch_attrs": {"mutations": {"nuc": ["A919G", "G3728T", "C12525T", "G15982A", "T25446C"]}}}, {"name": "NODE_0000161", "node_attrs": {"div": 38, "num_date": {"value": 2021.3450418302655, "confidence": [2021.1682040685553, 2021.498641643769]}}, "branch_attrs": {"mutations": {"nuc": ["A3536G"]}}, "children": [{"name": "NODE_0000162", "node_attrs": {"div": 39, "num_date": {"value": 2021.41405359375, "confidence": [2021.2250779559063, 2021.553408198608]}}, "branch_attrs": {"mutations": {"nuc": ["C8994T"]}}, "children": [{"name": "BRA/RJ-NVBS6267GENOV700938972041/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.672602739726, "confidence": [2021.672602739726, 2021.672602739726]}, "tsne_x": {"value": 22.748235097681725}, "umap_x": {"value": -0.6195707}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.865427}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.196261553145911}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.825416596863317}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.879743968803925}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.272512921683843}, "mds3": {"value": 36.894745422555566}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.105126265883243}}, "branch_attrs": {"mutations": {"nuc": ["T9702C", "T21748C", "C26681T", "G28357T", "G29543T", "G29692T", "C29719T", "T29726-", "T29727-"]}}}, {"name": "BRA/RJ-NVBS5315GENOV700931466431/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.6068493150685, "confidence": [2021.6068493150685, 2021.6068493150685]}, "tsne_x": {"value": 22.950680226603573}, "umap_x": {"value": 0.91214937}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.35014}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.519177880155711}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.655658714348949}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.673360152448787}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 3.179310504391164}, "mds3": {"value": 21.51046370427853}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.516516899921763}}, "branch_attrs": {"mutations": {"nuc": ["C20371T", "C21304A", "G25770T", "G26529C"]}}}]}, {"name": "NODE_0000163", "node_attrs": {"div": 41, "num_date": {"value": 2021.4190033798504, "confidence": [2021.3538883314084, 2021.5148161929678]}}, "branch_attrs": {"mutations": {"nuc": ["C4927T", "A5638G", "C12525T"]}}, "children": [{"name": "NODE_0000172", "node_attrs": {"div": 42, "num_date": {"value": 2021.510573827352, "confidence": [2021.4556421565462, 2021.5994901573015]}}, "branch_attrs": {"mutations": {"nuc": ["C1267T"]}}, "children": [{"name": "BRA/DF-NVBS4184GENOV827972423435/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6123287671232, "confidence": [2021.6123287671232, 2021.6123287671232]}, "tsne_x": {"value": 23.907496883273847}, "umap_x": {"value": 0.20403184}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.346642}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.37800812141746}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.202014682316378}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.58350727965415}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 5.449403328716657}, "mds3": {"value": 32.41374330199444}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.027999719988252}}, "branch_attrs": {"mutations": {"nuc": ["G15372T", "C19255T", "C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0000779", "node_attrs": {"div": 42, "num_date": {"value": 2021.5873209078736, "confidence": [2021.4509175518401, 2021.6647993085062]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PR-NVBS8498GENOV828212086199/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7575342465752, "confidence": [2021.7575342465752, 2021.7575342465752]}, "tsne_x": {"value": 23.90398105515337}, "umap_x": {"value": -0.009015065}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.150833}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.640414915118704}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.204144244848305}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.627717782679373}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 6.957341650169216}, "mds3": {"value": 30.571982655725208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.074804991605033}}, "branch_attrs": {"mutations": {"nuc": ["A513G", "C5784T", "A22771G"]}}}, {"name": "BRA/PR-NVBS10014GENOV045390092686/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8643835616438, "confidence": [2021.8643835616438, 2021.8643835616438]}, "tsne_x": {"value": 23.90314115072533}, "umap_x": {"value": -0.36471662}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.063284}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.764835927415099}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.152966933697924}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.55948763647282}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 4.834836043014692}, "mds3": {"value": 36.145148375390335}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.555952083603927}}, "branch_attrs": {"mutations": {"nuc": ["G17280T", "A26802G", "G28044T", "C29353T", "G29560A"]}}}]}]}, {"name": "NODE_0000780", "node_attrs": {"div": 41, "num_date": {"value": 2021.4496133332916, "confidence": [2021.3537677047332, 2021.5185997119293]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000169", "node_attrs": {"div": 42, "num_date": {"value": 2021.5883377150967, "confidence": [2021.423999175558, 2021.7114868596072]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "BRA/PI-NVBS9806GENOV701341922401/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_x": {"value": 23.952572669737595}, "umap_x": {"value": 0.06708013}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.204226}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.782497991286686}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.24245088667399}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.79866449014193}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 3.568134759221709}, "mds3": {"value": 33.420776752595}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.561027604414749}}, "branch_attrs": {"mutations": {"nuc": ["C2773T", "C20844T", "G25699T", "C29750T"]}}}, {"name": "BRA/MS-NVBS9555GENOV700957159614/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_x": {"value": 23.96173907063289}, "umap_x": {"value": -0.45321864}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.964382}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.284861942062921}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.235222256535204}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.89363752557924}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 7.892025376116513}, "mds3": {"value": 32.406908446622495}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.934382621894259}}, "branch_attrs": {"mutations": {"nuc": ["C4570T", "C4893T", "T7729C", "G11332T", "C16733T", "A19385G"]}}}]}, {"name": "NODE_0000783", "node_attrs": {"div": 41, "num_date": {"value": 2021.4570036747873, "confidence": [2021.3568404984817, 2021.5290262444455]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000168", "node_attrs": {"div": 42, "num_date": {"value": 2021.5077862507446, "confidence": [2021.414326054764, 2021.5301369863014]}}, "branch_attrs": {"mutations": {"nuc": ["C16376T"]}}, "children": [{"name": "BRA/RJ-NVBS3560GENOV827840218682/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5301369863014, 2021.5301369863014]}, "tsne_x": {"value": 23.88260553885439}, "umap_x": {"value": 1.1702242}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.46606}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.921845608822104}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.228693007193923}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.356481978650564}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -0.916840158983008}, "mds3": {"value": 31.73410662191287}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.1077321860990335}}, "branch_attrs": {"mutations": {"nuc": ["A29487T"]}}}, {"name": "BRA/MT-NVBS9184GENOV070984484882/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.7493150684932, "confidence": [2021.7493150684932, 2021.7493150684932]}, "tsne_x": {"value": 23.848366177646447}, "umap_x": {"value": -1.0625736}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.800716}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.960118516881982}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 9.988783423102342}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.812217691645525}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 7.109463049742934}, "mds3": {"value": 37.66067152418605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.264608123656671}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "C7609T", "C7819T", "A14791T", "G14923A", "A16992G", "T17565C"]}}}]}, {"name": "NODE_0000785", "node_attrs": {"div": 41, "num_date": {"value": 2021.4780984127174, "confidence": [2021.3557342318772, 2021.5316241199514]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000164", "node_attrs": {"div": 43, "num_date": {"value": 2021.5623581401182, "confidence": [2021.4851913986258, 2021.6169987200583]}}, "branch_attrs": {"mutations": {"nuc": ["T25554C", "G27561C"]}}, "children": [{"name": "BRA/EPI_ISL_8890010/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6260273972603, "confidence": [2021.6260273972603, 2021.6260273972603]}, "tsne_x": {"value": 23.906532494235734}, "umap_x": {"value": 1.0585059}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.44879}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.498012670039808}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.21069701858504}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.99406931744084}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "S\u00e3o Paulo"}, "mds2": {"value": 8.141556560344844}, "mds3": {"value": 25.605812081380343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -14.126510841455833}}, "branch_attrs": {"mutations": {"nuc": ["C8760A", "A24410G"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "BRA/EPI_ISL_8890155/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6479452054793, 2021.6479452054793]}, "tsne_x": {"value": 23.901760668159906}, "umap_x": {"value": 0.7991177}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.427412}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.343274331435863}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.223937046983178}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.642424257170067}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "S\u00e3o Paulo"}, "mds2": {"value": 5.127533194359677}, "mds3": {"value": 30.447076381778405}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -0.6102120476134055}}, "branch_attrs": {"mutations": {"nuc": ["C16887T"]}}}]}, {"name": "NODE_0000790", "node_attrs": {"div": 41, "num_date": {"value": 2021.4951763522308, "confidence": [2021.3557469588468, 2021.5302781940832]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000791", "node_attrs": {"div": 41, "num_date": {"value": 2021.4958584451374, "confidence": [2021.361121025083, 2021.5428666874384]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS5381GENOV827963075063/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.6068493150685, "confidence": [2021.6068493150685, 2021.6068493150685]}, "tsne_x": {"value": 23.87639995844908}, "umap_x": {"value": -0.9941055}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.82035}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.898423304742168}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.091119106865731}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.18722907932236}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -0.4863345764005932}, "mds3": {"value": 38.72917403747352}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.061286176598562}}, "branch_attrs": {"mutations": {"nuc": ["C2113T", "T7317C", "C14708T", "C16260T", "A21081C", "C24771T", "C27920T"], "S": ["A1070V"]}, "labels": {"aa": "S: A1070V"}}}, {"name": "NODE_0000795", "node_attrs": {"div": 41, "num_date": {"value": 2021.5268741009656, "confidence": [2021.3684645248186, 2021.5986575872307]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/DF-NVBS9927GENOV828344970946/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8342465753424, "confidence": [2021.8342465753424, 2021.8342465753424]}, "tsne_x": {"value": 23.885618592406185}, "umap_x": {"value": 0.86297536}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.459267}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.793262025641487}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.237931321276951}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.685793807412693}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 5.072737213918154}, "mds3": {"value": 27.902526875617973}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.59856108817845}}, "branch_attrs": {"mutations": {"nuc": ["C6472T", "A26759G"]}}}, {"name": "BRA/BA-NVBS7610GENOV828205376795/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.7520547945205, "confidence": [2021.7520547945205, 2021.7520547945205]}, "tsne_x": {"value": 23.90702522133936}, "umap_x": {"value": -1.055968}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.805458}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.046236494015272}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 9.998026865965596}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -17.65057474696911}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -1.5795768905427292}, "mds3": {"value": 40.639304447148106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.666712640103809}}, "branch_attrs": {"mutations": {"nuc": ["C2847T", "A7064C", "C7086T", "G7294T", "T18417C", "C25904T", "C27649T", "T27656C"]}}}]}]}, {"name": "NODE_0000175", "node_attrs": {"div": 42, "num_date": {"value": 2021.5104353880483, "confidence": [2021.4621439403547, 2021.5724622552248]}}, "branch_attrs": {"mutations": {"nuc": ["T27645C"]}}, "children": [{"name": "NODE_0000797", "node_attrs": {"div": 42, "num_date": {"value": 2021.5373604622835, "confidence": [2021.4641065425765, 2021.6222967685217]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS6148GENOV700939427151/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_x": {"value": 23.95187609966404}, "umap_x": {"value": 0.52618897}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.400564}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.350820579872569}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.243549468526895}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.29380187752108}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.2321558412453411}, "mds3": {"value": 32.97138308964669}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.895609109335849}}, "branch_attrs": {"mutations": {"nuc": ["G1149A", "T14408A"]}}}, {"name": "BRA/RJ-NVBS6462GENOV828071101422/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_x": {"value": 23.96590966386483}, "umap_x": {"value": 1.0603274}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.42806}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.714341639755724}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.236610984652309}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.380740666494976}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 4.2949760412899485}, "mds3": {"value": 30.701525564954583}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.333996015763022}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "C5512T", "A24410G"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}]}, {"name": "NODE_0000659", "node_attrs": {"div": 42, "num_date": {"value": 2021.522428465378, "confidence": [2021.4652233165357, 2021.5806377032234]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000660", "node_attrs": {"div": 42, "num_date": {"value": 2021.5533521229834, "confidence": [2021.4670273245258, 2021.5904109589042]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS5344GENOV827968696317/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.609589041096, "confidence": [2021.609589041096, 2021.609589041096]}, "tsne_x": {"value": 23.96185509513358}, "umap_x": {"value": 0.004457265}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.260628}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.378902040762885}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.236321828929594}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.6303149534415}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -5.180080474761631}, "mds3": {"value": 21.84214290534892}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.007421055902699}}, "branch_attrs": {"mutations": {"nuc": ["A1975G", "C10078T", "G14186A"]}}}, {"name": "BRA/RJ-NVBS5463GENOV827937393452/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5904109589042, "confidence": [2021.5904109589042, 2021.5904109589042]}, "tsne_x": {"value": 23.9048495827492}, "umap_x": {"value": 1.1459798}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.412876}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.933199015107086}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.268839585741729}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.57930524547885}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 4.260631338275951}, "mds3": {"value": 25.80025174588746}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.112716973730424}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000179", "node_attrs": {"div": 43, "num_date": {"value": 2021.5456556963848, "confidence": [2021.4794031280164, 2021.6268051404284]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000800", "node_attrs": {"div": 43, "num_date": {"value": 2021.5622992510705, "confidence": [2021.4790248927018, 2021.6290646993193]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/DF-NVBS9950GENOV828369273152/2021", "node_attrs": {"div": 53, "num_date": {"value": 2021.8506849315067, "confidence": [2021.8506849315067, 2021.8506849315067]}, "tsne_x": {"value": 24.334391239354407}, "umap_x": {"value": -1.3753904}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.693413}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.405264438053575}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.56586872728336}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.184004063613404}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -0.6017568885715824}, "mds3": {"value": 44.2674873350909}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.95894806965869}}, "branch_attrs": {"mutations": {"nuc": ["C1348T", "C1997T", "G4076A", "C5974T", "C7735T", "G7798T", "T11127C", "C14206T", "G17679T", "G27621C"]}}}, {"name": "NODE_0000180", "node_attrs": {"div": 46, "num_date": {"value": 2021.6431149993061, "confidence": [2021.5562922283182, 2021.6634287019185]}}, "branch_attrs": {"mutations": {"nuc": ["T10295G", "G11083T", "T25270C"]}}, "children": [{"name": "BRA/EPI_ISL_4273569/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_x": {"value": 24.02605830250112}, "umap_x": {"value": 1.159437}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.488808}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 56.022445927591406}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.24981485942074}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -17.29332026423806}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "S\u00e3o Paulo"}, "mds2": {"value": -10.721412290550438}, "mds3": {"value": 29.64050024352668}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 18.76793302471909}}, "branch_attrs": {"mutations": {"nuc": ["T27032A", "G29000T"]}}}, {"name": "BRA/ILMD2101356/2021", "node_attrs": {"div": 52, "num_date": {"value": 2021.9082191780822, "confidence": [2021.9082191780822, 2021.9082191780822]}, "tsne_x": {"value": 24.313555152854786}, "umap_x": {"value": -1.3947757}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.718397}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.805863787341872}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.387893367331351}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.554241773548704}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -3.823586482368189}, "mds3": {"value": 42.62834805829463}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.887461969596604}}, "branch_attrs": {"mutations": {"nuc": ["C17634A", "G23120T", "G23518T", "C23533T", "C27610T", "G28904A"], "S": ["A520S"]}, "labels": {"aa": "S: A520S"}}}]}]}, {"name": "NODE_0000802", "node_attrs": {"div": 43, "num_date": {"value": 2021.5618943595496, "confidence": [2021.4808973119275, 2021.6343589665294]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000184", "node_attrs": {"div": 44, "num_date": {"value": 2021.6610396754384, "confidence": [2021.5267286652454, 2021.7515064851207]}}, "branch_attrs": {"mutations": {"nuc": ["C26735T"]}}, "children": [{"name": "BRA/ILMD2101419/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.9219178082192, "confidence": [2021.9219178082192, 2021.9219178082192]}, "tsne_x": {"value": 24.20954568709448}, "umap_x": {"value": -1.1248806}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.772657}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.801192551216286}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.284427350832685}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.138997269395173}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 12.824536673003522}, "mds3": {"value": 30.83132445367033}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.2055191715877594}}, "branch_attrs": {"mutations": {"nuc": ["C934T", "C2462T", "C7086T", "T7118A", "C21304A", "C27524T", "C29358T"]}}}, {"name": "BRA/ILMD2200051/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.9301369863015, "confidence": [2021.9301369863015, 2021.9301369863015]}, "tsne_x": {"value": 24.045545494010085}, "umap_x": {"value": -0.495238}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.05848}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.888945559434207}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.269690561199544}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.08993391038952}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 4.2862200926119245}, "mds3": {"value": 33.62599275834474}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.576733155728769}}, "branch_attrs": {"mutations": {"nuc": ["A4326G", "C12081T", "G27204T"]}}}]}, {"name": "NODE_0000182", "node_attrs": {"div": 45, "num_date": {"value": 2021.6314623446392, "confidence": [2021.5570087572612, 2021.672602739726]}}, "branch_attrs": {"mutations": {"nuc": ["A2396G", "C25708A"]}}, "children": [{"name": "BRA/DF-NVBS9943GENOV828347025964/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.83698630137, "confidence": [2021.83698630137, 2021.83698630137]}, "tsne_x": {"value": 24.23270082757989}, "umap_x": {"value": -1.4093807}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.655153}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.315981534024775}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.371973296446004}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.575526776772644}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 5.084573288457257}, "mds3": {"value": 38.82886740528263}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.646499040805036}}, "branch_attrs": {"mutations": {"nuc": ["T457C", "G4300T", "A6502G", "C7765T", "G15743A", "G21850T"], "S": ["E96D"]}, "labels": {"aa": "S: E96D"}}}, {"name": "BRA/DF-NVBS6089GENOV828077841292/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.672602739726, "confidence": [2021.672602739726, 2021.672602739726]}, "tsne_x": {"value": 24.060702072763235}, "umap_x": {"value": -0.43898737}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.048643}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.786423210340715}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "tsne_y": {"value": 10.280850428957413}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.662174259760203}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.1006364510765807}, "mds3": {"value": 35.546294320422405}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.595131107047951}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "C13059T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000805", "node_attrs": {"div": 35, "num_date": {"value": 2021.20707762516, "confidence": [2021.0377639907335, 2021.363245461295]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000135", "node_attrs": {"div": 39, "num_date": {"value": 2021.3217204185744, "confidence": [2021.2680383384131, 2021.3778932725647]}}, "branch_attrs": {"mutations": {"nuc": ["C9286T", "C21304T", "C23277T", "G24124A"], "S": ["T572I"]}, "labels": {"aa": "S: T572I"}}, "children": [{"name": "NODE_0000136", "node_attrs": {"div": 41, "num_date": {"value": 2021.4369216386247, "confidence": [2021.3814159606718, 2021.458904109589]}}, "branch_attrs": {"mutations": {"nuc": ["T13701C", "C22311T"], "S": ["T250I"]}, "labels": {"aa": "S: T250I"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-C150/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_x": {"value": 19.3615030896599}, "umap_x": {"value": 1.8743697}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.374357}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.563086543132745}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.333969608230955}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.44956111905363}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -1.8271628763078505}, "mds3": {"value": 28.356165962713654}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -9.161087268191467}}, "branch_attrs": {"mutations": {"nuc": ["A24410G", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-F705/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_x": {"value": 19.406728294197084}, "umap_x": {"value": 1.7238884}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.16321}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.560401120235606}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.546691178156635}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.97518360423925}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": 2.787045207612626}, "mds3": {"value": 26.55664910377419}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.3976217953714447}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000809", "node_attrs": {"div": 39, "num_date": {"value": 2021.351721601966, "confidence": [2021.2733679120665, 2021.3871579027495]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000811", "node_attrs": {"div": 39, "num_date": {"value": 2021.4159765379356, "confidence": [2021.2469471070278, 2021.5310247829773]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z715/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_x": {"value": 19.41508374917144}, "umap_x": {"value": 0.15051745}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.27567}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.801072276204112}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.209001440758517}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.299424527309824}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.0911763030674382}, "mds3": {"value": 35.468652116692745}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -13.047276310182436}}, "branch_attrs": {"mutations": {"nuc": ["T1029C", "G13459T", "C16308T", "G17790A", "G20134A", "C24370T"]}}}, {"name": "NODE_0000139", "node_attrs": {"div": 40, "num_date": {"value": 2021.5080464373366, "confidence": [2021.4531908510999, 2021.5328767123287]}}, "branch_attrs": {"mutations": {"nuc": ["C3737T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z563/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_x": {"value": 19.433173359752768}, "umap_x": {"value": 1.7070676}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.217337}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.805599344501366}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.538463138118969}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.837655092850444}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": 3.0723078585798897}, "mds3": {"value": 25.820091160871343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.158216185714556}}, "branch_attrs": {"mutations": {"nuc": ["C28054T"]}}}, {"name": "NODE_0000813", "node_attrs": {"div": 40, "num_date": {"value": 2021.5628485213745, "confidence": [2021.4374247538115, 2021.64791883409]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-H799/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_x": {"value": 19.391382764513}, "umap_x": {"value": 1.8072017}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.419516}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.605221940325483}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.325678068019808}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.255703895250928}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -2.357157363220164}, "mds3": {"value": 29.87332279802608}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.709815309578314}}, "branch_attrs": {"mutations": {"nuc": ["C9298T", "G22028-", "-22034A", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A"], "S": ["X156-", "X158R", "X1274*"]}, "labels": {"aa": "S: X156-, X158R, X1274*"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AD72/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7657534246575, "confidence": [2021.7657534246575, 2021.7657534246575]}, "tsne_x": {"value": 19.39269428219424}, "umap_x": {"value": 0.6584521}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.374777}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.278681724581398}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.21653132751261}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.844637214600263}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -4.477964492696406}, "mds3": {"value": 34.19435218501069}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -13.221237333963698}}, "branch_attrs": {"mutations": {"nuc": ["C2094T", "C6730T", "C26111T", "T29791C"]}}}]}]}]}, {"name": "NODE_0000815", "node_attrs": {"div": 40, "num_date": {"value": 2021.3817842488959, "confidence": [2021.3165557249638, 2021.3950679365141]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000142", "node_attrs": {"div": 42, "num_date": {"value": 2021.4504406335948, "confidence": [2021.3741008616796, 2021.4904387902902]}}, "branch_attrs": {"mutations": {"nuc": ["C8964T", "G21255T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-D316/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": 19.44005553117923}, "umap_x": {"value": 1.8032739}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.342066}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.7927227774851473}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.356111090522443}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -17.847024266410294}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -4.848970678150286}, "mds3": {"value": 29.020233128149165}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 3.6676184974541046}}, "branch_attrs": {"mutations": {"nuc": ["A10323G", "T10933C"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-H831/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.672602739726, "confidence": [2021.672602739726, 2021.672602739726]}, "tsne_x": {"value": 19.37232848066343}, "umap_x": {"value": 1.1675898}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.478632}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.654964406111864}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.133505861564192}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.13831867714229}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -6.294932600412465}, "mds3": {"value": 33.25478054815352}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.856218972418237}}, "branch_attrs": {"mutations": {"nuc": ["C7765G", "A21987G", "A24410G", "G25305T", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A", "G29781T"], "S": ["D142G", "N950D", "C1248F"]}, "labels": {"aa": "S: D142G, N950D, C1248F"}}}]}, {"name": "NODE_0000143", "node_attrs": {"div": 40, "num_date": {"value": 2021.3983888584187, "confidence": [2021.3189006881432, 2021.3986301369864]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B974/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3986301369864, 2021.3986301369864]}, "tsne_x": {"value": 19.506394522852787}, "umap_x": {"value": 2.4649837}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.024971}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.958953332521882}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.863475551996984}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.254387043926823}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": 0.9617821064225014}, "mds3": {"value": 24.61777358698412}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.1808902449688854}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000818", "node_attrs": {"div": 40, "num_date": {"value": 2021.3983888584187, "confidence": [2021.3124823815867, 2021.4690227047734]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000144", "node_attrs": {"div": 41, "num_date": {"value": 2021.4505615300222, "confidence": [2021.376247357859, 2021.528451489586]}}, "branch_attrs": {"mutations": {"nuc": ["C4012T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z728/2021", "node_attrs": {"div": 53, "num_date": {"value": 2021.8123287671233, "confidence": [2021.8123287671233, 2021.8123287671233]}, "tsne_x": {"value": 19.495109270805543}, "umap_x": {"value": -1.4755485}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.634373}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 18.507325027040856}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 9.91620408856848}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.53772719166214}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": 12.177309200110118}, "mds3": {"value": 29.165224237881542}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 6.266642466647048}}, "branch_attrs": {"mutations": {"nuc": ["G702A", "G1544T", "G2875C", "C7777T", "G17019A", "G19677T", "G19684C", "C22227T", "G23948T", "C25611A", "G26428T", "G28817T"], "S": ["A222V", "D796Y"]}, "labels": {"aa": "S: A222V, D796Y"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-D897/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_x": {"value": 19.455923561596364}, "umap_x": {"value": 0.97737753}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.2964}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.861849847166975}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.478542879014894}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.87751314696776}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": 3.857156389129873}, "mds3": {"value": 27.27945358823924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.092485287063245}}, "branch_attrs": {"mutations": {"nuc": ["C601T", "G24199A"]}}}]}, {"name": "NODE_0000820", "node_attrs": {"div": 40, "num_date": {"value": 2021.4230406719714, "confidence": [2021.3121472324062, 2021.4698630136986]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ZAF/NHLS-UCT-GS-C696/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4698630136986, "confidence": [2021.4698630136986, 2021.4698630136986]}, "tsne_x": {"value": 19.49850742397243}, "umap_x": {"value": 2.2657866}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.195038}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.915246882173074}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.93513828586622}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.944092182722763}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": 0.418425021449725}, "mds3": {"value": 25.59518533874925}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.014234932597851}}, "branch_attrs": {"mutations": {"nuc": ["A2580C"]}}}, {"name": "NODE_0000824", "node_attrs": {"div": 40, "num_date": {"value": 2021.4491743526366, "confidence": [2021.3103747079147, 2021.4826987261126]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-D310/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": 19.42890019712513}, "umap_x": {"value": 1.3856215}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.38891}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.940753058925312}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.431799770314766}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.163387750204173}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": 0.4302125982677321}, "mds3": {"value": 30.759309582346823}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.9971654712433056}}, "branch_attrs": {"mutations": {"nuc": ["C3737T", "C17172T", "C29614T"]}}}, {"name": "SouthAfrica/NHLS-UCT-LA-Z547/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": 19.4241875111851}, "umap_x": {"value": 2.166474}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.209675}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.909210767212668}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "tsne_y": {"value": 10.67143470197405}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.351251178088926}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.7545440677948484}, "mds3": {"value": 27.155532422059224}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.344851351541122}}, "branch_attrs": {"mutations": {"nuc": ["C24130T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000825", "node_attrs": {"div": 35, "num_date": {"value": 2021.3267219798604, "confidence": [2021.1401290406022, 2021.4568272019685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000129", "node_attrs": {"div": 37, "num_date": {"value": 2021.507248783698, "confidence": [2021.3199148985816, 2021.6612092728342]}}, "branch_attrs": {"mutations": {"nuc": ["G22899T", "G29688T"], "S": ["G446V"]}, "labels": {"aa": "S: G446V"}}, "children": [{"name": "BGD/Laila_694/2022", "node_attrs": {"div": 48, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": 20.78214525039268}, "umap_x": {"value": -0.024994642}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.05983}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.1248997161868914}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.131"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.945127961973448}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.63984698785811}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bangladesh"}, "mds2": {"value": -8.830267599084063}, "mds3": {"value": 19.713773881081515}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.5483999767615138}}, "branch_attrs": {"mutations": {"nuc": ["C12923T", "C14407T", "T14775C", "G19999T", "C21846T", "G23012C", "C23059T", "A23064C", "A24410G", "C28054G", "T29014C"], "S": ["T95I", "E484Q", "N501T", "N950D"]}, "labels": {"aa": "S: T95I, E484Q, N501T, N950D"}}}, {"name": "NODE_0000130", "node_attrs": {"div": 41, "num_date": {"value": 2021.696669087997, "confidence": [2021.619181948609, 2021.7712328767122]}}, "branch_attrs": {"mutations": {"nuc": ["C15857T", "G20937A", "A21647G", "C22311T"], "S": ["T29A", "T250I"]}, "labels": {"aa": "S: T29A, T250I"}}, "children": [{"name": "BHR/21921662637_S8_L001/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_x": {"value": 18.32888285391224}, "umap_x": {"value": 2.0388112}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.256603}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 40.582513233936325}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.32043676897882}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -18.9688091707614}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -3.460405408377273}, "mds3": {"value": 27.37667412856647}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.578990144960629}}, "branch_attrs": {"mutations": {"nuc": ["A23670G"], "S": ["N703S"]}, "labels": {"aa": "S: N703S"}}}, {"name": "NODE_0000828", "node_attrs": {"div": 41, "num_date": {"value": 2021.746534477576, "confidence": [2021.6199534742811, 2021.7752404728367]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921710933/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_x": {"value": 18.26090584528212}, "umap_x": {"value": 1.1708558}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.314938}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.509434145576127}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.231025743112946}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.13855312921465}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": 5.252487898093779}, "mds3": {"value": 23.48367904441916}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -9.036532579731212}}, "branch_attrs": {"mutations": {"nuc": ["C10741T"]}}}, {"name": "NODE_0000132", "node_attrs": {"div": 42, "num_date": {"value": 2021.8173204147506, "confidence": [2021.7039084264468, 2021.8479452054794]}}, "branch_attrs": {"mutations": {"nuc": ["A19116G"]}}, "children": [{"name": "BHR/21921839788_S44_L001/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8479452054794, "confidence": [2021.8479452054794, 2021.8479452054794]}, "tsne_x": {"value": 18.229238191358085}, "umap_x": {"value": 0.83872795}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.342503}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 28.38011704785689}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.170762612802372}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -26.69869461777541}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": 6.487174752776914}, "mds3": {"value": 26.00680781194901}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.288986533209963}}, "branch_attrs": {"mutations": {"nuc": ["T5251C"]}}}, {"name": "NODE_0000830", "node_attrs": {"div": 42, "num_date": {"value": 2021.8472987787181, "confidence": [2021.6987528114819, 2021.8917808219178]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21342765998/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.8917808219178, "confidence": [2021.8917808219178, 2021.8917808219178]}, "tsne_x": {"value": 18.26995311223744}, "umap_x": {"value": 1.4387285}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.424475}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 11.06984040805326}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.23454815237849}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.577142868700093}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": 5.41740854245561}, "mds3": {"value": 24.359263800673894}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.460594114387035}}, "branch_attrs": {"mutations": {}}}, {"name": "BHR/21342778687/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.9027397260274, "confidence": [2021.9027397260274, 2021.9027397260274]}, "tsne_x": {"value": 18.23450358659094}, "umap_x": {"value": 1.507457}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.417751}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.689501344715822}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.179029192473948}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.825044660259373}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -3.113062296027868}, "mds3": {"value": 30.88984237425776}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.399535931906113}}, "branch_attrs": {"mutations": {"nuc": ["T1871G"]}}}]}]}]}]}]}, {"name": "NODE_0000831", "node_attrs": {"div": 35, "num_date": {"value": 2021.4147827039926, "confidence": [2021.148232624484, 2021.458904109589]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-C166/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_x": {"value": 19.332364962435346}, "umap_x": {"value": 2.6298006}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.10625}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.016397948056806}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.662603690894771}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -17.55267782402104}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.9162571860240076}, "mds3": {"value": 20.28936148025115}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.843510681760443}}, "branch_attrs": {"mutations": {"nuc": ["A24410G", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "NODE_0000832", "node_attrs": {"div": 35, "num_date": {"value": 2021.4500346203995, "confidence": [2021.1481961373877, 2021.5871151921344]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-CDC-IBX190514276298/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.7438356164384, "confidence": [2021.7438356164384, 2021.7438356164384]}, "tsne_x": {"value": 18.78768183193086}, "umap_x": {"value": 2.4638653}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.212994}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 34.29597150795069}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.813757495629709}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -19.20306661394176}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Minnesota"}, "mds2": {"value": -2.2604669662046017}, "mds3": {"value": 24.270359802290933}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -2.8295057413584}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "T2021C", "T15453C", "G26107C", "C28657T"]}}}, {"name": "NODE_0000149", "node_attrs": {"div": 38, "num_date": {"value": 2021.565588925714, "confidence": [2021.4020847615668, 2021.6580685954625]}}, "branch_attrs": {"mutations": {"nuc": ["C15952A", "C18744T", "A28299T"]}}, "children": [{"name": "NODE_0000834", "node_attrs": {"div": 38, "num_date": {"value": 2021.6479172672002, "confidence": [2021.4096220138124, 2021.7296552299626]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/p2288/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.7383561643835, "confidence": [2021.7383561643835, 2021.7383561643835]}, "tsne_x": {"value": 18.44835437007654}, "umap_x": {"value": 2.3478644}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.15243}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 31.62882424721757}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.436613810184282}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -22.90309407282403}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Uruguay"}, "mds2": {"value": 1.7979224930413849}, "mds3": {"value": 23.09106857986367}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -15.171355791852914}}, "branch_attrs": {"mutations": {"nuc": ["G29706T"]}}}, {"name": "OV239433", "node_attrs": {"div": 42, "num_date": {"value": 2021.8808219178081, "confidence": [2021.8808219178081, 2021.8808219178081]}, "tsne_x": {"value": 18.17898346507757}, "umap_x": {"value": 1.4423323}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.451588}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 18.21869671852236}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.383503243518076}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.293921259572784}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": 5.481406017222879}, "mds3": {"value": 25.556255015472725}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.9273241283119145}}, "branch_attrs": {"mutations": {"nuc": ["C11020T", "C25624T", "G25726T", "G27706T"]}}}]}, {"name": "NODE_0000151", "node_attrs": {"div": 39, "num_date": {"value": 2021.6066063690564, "confidence": [2021.441588679734, 2021.6724829477296]}}, "branch_attrs": {"mutations": {"nuc": ["C24130T"]}}, "children": [{"name": "NODE_0000157", "node_attrs": {"div": 40, "num_date": {"value": 2021.6439469516688, "confidence": [2021.4756996913936, 2021.7055834890755]}}, "branch_attrs": {"mutations": {"nuc": ["G3728T"]}}, "children": [{"name": "BRA/RJ-NVBS8946GENOV828226902492/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7657534246575, "confidence": [2021.7657534246575, 2021.7657534246575]}, "tsne_x": {"value": 17.886119758347565}, "umap_x": {"value": 0.27059728}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.286806}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.7929061192821525}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.389878416033206}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.907361204351165}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 8.811717114031408}, "mds3": {"value": 29.02478140350804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.615680437277264}}, "branch_attrs": {"mutations": {"nuc": ["A2818C", "C18452T", "G19009T", "T20197C", "C28054T"]}}}, {"name": "BRA/RJ-NVBS11944GENOV828506379136/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.9301369863015, "confidence": [2021.9301369863015, 2021.9301369863015]}, "tsne_x": {"value": 17.65618647299364}, "umap_x": {"value": -1.2857181}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.711786}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.347045383423225}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.4078334561457}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.57550153848633}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 11.742687111785198}, "mds3": {"value": 35.05211234179325}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.657013811065247}}, "branch_attrs": {"mutations": {"nuc": ["A726G", "A2166G", "G4436A", "C13923T", "G20569T", "C21575T", "C25452T", "C26013T", "C27945T", "C29754T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}, {"name": "NODE_0000837", "node_attrs": {"div": 39, "num_date": {"value": 2021.6431275625985, "confidence": [2021.4397694442023, 2021.6795370685738]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS8889GENOV700949468441/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7767123287672, "confidence": [2021.7767123287672, 2021.7767123287672]}, "tsne_x": {"value": 17.939983538612022}, "umap_x": {"value": 1.685997}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.416197}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.078221169171728}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.390854831695949}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -28.389094442916907}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 2.098232895048082}, "mds3": {"value": 17.60948174460237}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.307084300696178}}, "branch_attrs": {"mutations": {"nuc": ["T7124C", "C7869T", "A22995C", "T23794C", "C29002A"], "S": ["K478T"]}, "labels": {"aa": "S: K478T"}}}, {"name": "BRA/SP-NVBS6849GENOV828082073756/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_x": {"value": 18.192844116787207}, "umap_x": {"value": 2.237212}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.250986}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.34399704915358}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.408370191169269}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.100491596095328}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": -0.9465606216751796}, "mds3": {"value": 26.16245292838954}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.868632326382541}}, "branch_attrs": {"mutations": {"nuc": ["T3037C"]}}}]}, {"name": "NODE_0000154", "node_attrs": {"div": 40, "num_date": {"value": 2021.6505211053059, "confidence": [2021.5113561653827, 2021.6835616438357]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NZL/21MV1458/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6835616438357, "confidence": [2021.6835616438357, 2021.6835616438357]}, "tsne_x": {"value": 18.83633893341985}, "umap_x": {"value": 2.549966}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.15746}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.3571229268406695}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.467367377015416}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.955834699101626}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": 0.1848354177525625}, "mds3": {"value": 24.051443121858885}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.604980755396086}}, "branch_attrs": {"mutations": {"nuc": ["T24130C"]}}}, {"name": "NODE_0000841", "node_attrs": {"div": 40, "num_date": {"value": 2021.6688178614968, "confidence": [2021.5102306633676, 2021.7110400307881]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-224525/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.872602739726, "confidence": [2021.872602739726, 2021.872602739726]}, "tsne_x": {"value": 17.869424741765794}, "umap_x": {"value": -0.29052728}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.064531}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.564989808058892}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.40635146658941}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.227276474855124}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Hovedstaden"}, "mds2": {"value": 8.29059014793887}, "mds3": {"value": 25.51998355695772}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.143691427508858}}, "branch_attrs": {"mutations": {"nuc": ["C233T", "C1952A", "C3688T", "C20104T", "T27409C", "C27643T", "G29081T"]}}}, {"name": "BRA/SP-NVBS11525GENOV045617217304/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9191780821918, "confidence": [2021.9191780821918, 2021.9191780821918]}, "tsne_x": {"value": 17.93041398273438}, "umap_x": {"value": -0.5968231}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.960594}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.496194946485296}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.39163202003672}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.89363489558403}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 6.704559993339561}, "mds3": {"value": 24.7500808022226}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.266316538385229}}, "branch_attrs": {"mutations": {"nuc": ["G3323-", "T3324-", "T3325-", "C3326-", "A3327-", "G3328-", "A3329-", "C3330-", "T3331-", "A3332-", "T3333-", "T3334-", "C3411T", "C12663T", "T16374C", "C21855T", "C25433T", "C26735T"], "S": ["S98F"]}, "labels": {"aa": "S: S98F"}}}]}]}, {"name": "NODE_0000838", "node_attrs": {"div": 39, "num_date": {"value": 2021.6502657642905, "confidence": [2021.437599831617, 2021.7357044474181]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10150-CVDP-D95F11DB-6D01-4DF8-A153-AF03CAC38D0E", "node_attrs": {"div": 39, "num_date": {"value": 2021.768493150685, "confidence": [2021.768493150685, 2021.768493150685]}, "tsne_x": {"value": 18.27608701800364}, "umap_x": {"value": 2.3375633}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.021194}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.8705397288071306}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.411671228511144}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.422295153101302}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 1.4956798870892063}, "mds3": {"value": 22.14549556031145}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.201746215333087}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000839", "node_attrs": {"div": 39, "num_date": {"value": 2021.6795996991361, "confidence": [2021.4376308399012, 2021.751824856454]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS8584/2022", "node_attrs": {"div": 49, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": 17.678552513306744}, "umap_x": {"value": -0.6848097}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.825598}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.0410063092887123}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.420309253250515}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.28155076961232}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kenya"}, "mds2": {"value": 9.349032958395185}, "mds3": {"value": 20.285421757031056}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 6.419125044505516}}, "branch_attrs": {"mutations": {"nuc": ["G713A", "C829T", "C1594T", "T3106C", "C10156T", "C12876T", "C13430T", "C28000T", "C28348T", "G29779T"]}}}, {"name": "BRA/SP-NVBS11468GENOV828516744009/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9356164383562, "confidence": [2021.9356164383562, 2021.9356164383562]}, "tsne_x": {"value": 17.852046962289073}, "umap_x": {"value": -0.35917607}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.964283}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.489651160057094}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.43.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.38723799820364}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.440611438713383}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Brazil"}, "mds2": {"value": 10.382018909627588}, "mds3": {"value": 26.61137130946029}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.247369401739257}}, "branch_attrs": {"mutations": {"nuc": ["A2618G", "C12534T", "T22756C", "C24378T", "A24772T", "T25745C", "C29642T"], "S": ["S939F"]}, "labels": {"aa": "S: S939F"}}}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000698", "node_attrs": {"div": 34, "num_date": {"value": 2021.1363868575074, "confidence": [2021.003541517232, 2021.2920893465935]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000235", "node_attrs": {"div": 35, "num_date": {"value": 2021.2058990542632, "confidence": [2021.0562754640184, 2021.3675063985784]}}, "branch_attrs": {"mutations": {"nuc": ["C10977T"]}}, "children": [{"name": "NZL/21MV0511/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_x": {"value": 19.796642906260963}, "umap_x": {"value": 1.4825959}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.110132}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29206073970172}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.1781479728296}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -27.90447635787121}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.3767015567546532}, "mds3": {"value": 22.40732582227274}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.515427245273668}}, "branch_attrs": {"mutations": {"nuc": ["A3765G", "G4657A", "A11052G", "A21194G", "C29353T", "G29825T"]}}}, {"name": "NODE_0000684", "node_attrs": {"div": 35, "num_date": {"value": 2021.243400704447, "confidence": [2021.0568237899133, 2021.3710506993566]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UGA/MUWRP-KIR210131S/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4150684931508, "confidence": [2021.4150684931508, 2021.4150684931508]}, "tsne_x": {"value": 19.163803501066184}, "umap_x": {"value": 1.1978102}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.311892}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.618519410377028}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.356470105764716}, "country": {"value": "Uganda"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.70728660157957}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Uganda"}, "mds2": {"value": -0.7945006340021467}, "mds3": {"value": 30.65516075975837}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.554371598756668}}, "branch_attrs": {"mutations": {"nuc": ["C12473T", "A15283G", "C19884T", "G26144T", "A27020G", "G29315T"]}}}, {"name": "NODE_0000685", "node_attrs": {"div": 35, "num_date": {"value": 2021.2698188472507, "confidence": [2021.0692058706898, 2021.3744097040023]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UGA/MUWRP-KIR210128S/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_x": {"value": 19.523740764825256}, "umap_x": {"value": 1.6937805}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.165157}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.612186593086381}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46.5"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.357565732772498}, "country": {"value": "Uganda"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.411204197682416}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Uganda"}, "mds2": {"value": 2.240084963657614}, "mds3": {"value": 24.3855342346213}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5537117541480553}}, "branch_attrs": {"mutations": {"nuc": ["C15569T", "A20374G", "C24378T", "A28901G"], "S": ["S939F"]}, "labels": {"aa": "S: S939F"}}}, {"name": "NODE_0000686", "node_attrs": {"div": 35, "num_date": {"value": 2021.375937049556, "confidence": [2021.314259713866, 2021.376712328767]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UGA/MUWRP-KIR210109S/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.376712328767, "confidence": [2021.376712328767, 2021.376712328767]}, "tsne_x": {"value": 19.69120178478805}, "umap_x": {"value": 2.6417744}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.122492}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.61855459177727}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.62502654941916}, "country": {"value": "Uganda"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.54193252865305}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Uganda"}, "mds2": {"value": -0.3544099699880815}, "mds3": {"value": 22.50460753973077}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5514446942645195}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000691", "node_attrs": {"div": 35, "num_date": {"value": 2021.414842857919, "confidence": [2021.3602954535006, 2021.4232876712329]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UGA/MUWRP-KIR210143S/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_x": {"value": 19.68320397529072}, "umap_x": {"value": 2.6434307}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.081402}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.61855459177727}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.629873460861866}, "country": {"value": "Uganda"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.114311371977102}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Uganda"}, "mds2": {"value": -0.4580825586783641}, "mds3": {"value": 22.503751497317733}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5514446942645195}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000692", "node_attrs": {"div": 35, "num_date": {"value": 2021.4227586725042, "confidence": [2021.3795465020935, 2021.5383561643835]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0607/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5383561643835, "confidence": [2021.5383561643835, 2021.5383561643835]}, "tsne_x": {"value": 19.72817035398533}, "umap_x": {"value": 2.6627066}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.1022}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 56.499915030495615}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.939192072729988}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": -19.4292714979806}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.70397402005965}, "mds3": {"value": 21.12413881517555}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 6.906744107291667}}, "branch_attrs": {"mutations": {"nuc": ["G23545T", "C25553T"], "S": ["E661D"]}, "labels": {"aa": "S: E661D"}}}, {"name": "NODE_0000693", "node_attrs": {"div": 35, "num_date": {"value": 2021.456885185981, "confidence": [2021.3908081465643, 2021.5692847984337]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS8077/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6534246575343, "confidence": [2021.6534246575343, 2021.6534246575343]}, "tsne_x": {"value": 18.96773710205857}, "umap_x": {"value": 1.2490569}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.323023}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.888303400629134}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.303604334207716}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.024197867762005}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kenya"}, "mds2": {"value": -6.662414893644888}, "mds3": {"value": 23.64098855069717}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5918277939233554}}, "branch_attrs": {"mutations": {"nuc": ["C4940T", "C6706T", "A13915G", "C21575T", "T22555C", "A28594G"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "KEN/SS4140/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8616438356164, "confidence": [2021.8616438356164, 2021.8616438356164]}, "tsne_x": {"value": 18.26269645548276}, "umap_x": {"value": -0.03366241}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.24094}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.0986451130628323}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.6224375416202}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.06174849401761}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kenya"}, "mds2": {"value": 8.941557409698367}, "mds3": {"value": 21.751193288474184}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.167399026221445}}, "branch_attrs": {"mutations": {"nuc": ["C173T", "C7420T", "T8986C", "C10714T", "G13205T", "C15216T", "A19403G", "T26076C", "C27575T", "C28677T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000707", "node_attrs": {"div": 34, "num_date": {"value": 2021.1511324115422, "confidence": [2020.976763092208, 2021.3108547094648]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000694", "node_attrs": {"div": 34, "num_date": {"value": 2021.1844210913, "confidence": [2020.9740208146825, 2021.3335149342395]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000223", "node_attrs": {"div": 35, "num_date": {"value": 2021.2460218235922, "confidence": [2021.043964645067, 2021.3486035904457]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NODE_0000697", "node_attrs": {"div": 35, "num_date": {"value": 2021.3229932698366, "confidence": [2021.0229506951453, 2021.385901097454]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/Laila_188/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5246575342467, "confidence": [2021.5246575342467, 2021.5246575342467]}, "tsne_x": {"value": 19.00956196826702}, "umap_x": {"value": 1.8493028}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.371445}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.348764398218133}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.53540278552378}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.709641135384096}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 3.666638758487512}, "mds3": {"value": 25.4279311795508}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.0592965558894}}, "branch_attrs": {"mutations": {"nuc": ["C11199T", "G15006A", "T18696C", "C19512T", "G24348C", "G28077A"], "S": ["S929T"]}, "labels": {"aa": "S: S929T"}}}, {"name": "NODE_0000225", "node_attrs": {"div": 36, "num_date": {"value": 2021.4562083486228, "confidence": [2021.3471049816183, 2021.5301369863014]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "BHR/21342716004_S86_L001/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.817808219178, "confidence": [2021.817808219178, 2021.817808219178]}, "tsne_x": {"value": 19.38725592858964}, "umap_x": {"value": 2.361678}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.19087}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 30.389090237730727}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.175764291042835}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -21.54867896527144}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": 1.2413362781175212}, "mds3": {"value": 23.791685080108795}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -3.4148608913656524}}, "branch_attrs": {"mutations": {"nuc": ["C11074T", "A21647G", "C22311T"], "S": ["T29A", "T250I"]}, "labels": {"aa": "S: T29A, T250I"}}}, {"name": "OU445241", "node_attrs": {"div": 38, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5301369863014, 2021.5301369863014]}, "tsne_x": {"value": 20.37629000731076}, "umap_x": {"value": 2.5747848}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.951393}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.041384403156584}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.636900885348595}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.776451563171257}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.252688896436781}, "mds3": {"value": 22.16316627376908}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.329670190312878}}, "branch_attrs": {"mutations": {"nuc": ["C5392T", "C7851T"]}}}]}]}, {"name": "NODE_0000226", "node_attrs": {"div": 36, "num_date": {"value": 2021.3217324351715, "confidence": [2021.089341585167, 2021.3520547945207]}}, "branch_attrs": {"mutations": {"nuc": ["G1048T"]}}, "children": [{"name": "USA/MA-CDC-QDX24941127/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3520547945207, "confidence": [2021.3520547945207, 2021.3520547945207]}, "tsne_x": {"value": 19.75720702212405}, "umap_x": {"value": 2.618402}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.106773}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.453815764933329}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 12.69915214285846}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.446479714791995}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Massachusetts"}, "mds2": {"value": -0.4360963622233417}, "mds3": {"value": 22.206664641580595}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.134446280015137}}, "branch_attrs": {"mutations": {"nuc": ["A2139T", "G28280T"]}}}, {"name": "NODE_0000702", "node_attrs": {"div": 36, "num_date": {"value": 2021.3225027424508, "confidence": [2021.091855225933, 2021.3934500061146]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10004-CVDP-32351173-3BBC-4C36-975A-C6089173C61A", "node_attrs": {"div": 44, "num_date": {"value": 2021.7, "confidence": [2021.7, 2021.7]}, "tsne_x": {"value": 18.38273681081422}, "umap_x": {"value": 0.17630313}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.251757}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.9869330853478784}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 13.441061595330655}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.985544080461818}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 4.447719384516305}, "mds3": {"value": 30.558874663462767}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.095555810249536}}, "branch_attrs": {"mutations": {"nuc": ["C2061T", "G4504T", "C6196T", "C18395T", "C20016T", "G27459T", "C27657T", "C28344A"]}}}, {"name": "NODE_0000703", "node_attrs": {"div": 36, "num_date": {"value": 2021.346010792135, "confidence": [2021.0919737241456, 2021.432151132868]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SYC/SS3524/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_x": {"value": 19.19024703682309}, "umap_x": {"value": -0.09272606}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.16818}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 55.86725484168627}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 15.398844809680565}, "country": {"value": "Seychelles"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": -16.186237117637244}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Seychelles"}, "mds2": {"value": -9.825349934904294}, "mds3": {"value": 35.925830053721405}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 9.934513052282488}}, "branch_attrs": {"mutations": {"nuc": ["A1313G", "C2334T", "G5612T", "G11287A", "T13885C", "C17285T", "G19827T", "G22927T", "G25440T", "G26416T", "C26936T"], "S": ["L455F"]}, "labels": {"aa": "S: L455F"}}}, {"name": "SYC/SS3535/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6972602739727, "confidence": [2021.6972602739727, 2021.6972602739727]}, "tsne_x": {"value": 22.32558918246055}, "umap_x": {"value": 1.1817359}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.398794}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 16.71337940675052}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "tsne_y": {"value": 15.108797078749635}, "country": {"value": "Seychelles"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.561744969457063}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Seychelles"}, "mds2": {"value": -7.904072514723742}, "mds3": {"value": 30.663058616325905}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 8.342324778633222}}, "branch_attrs": {"mutations": {"nuc": ["C1909T", "G7223A", "T14103C", "G18583A", "T24379C", "A25448G", "A29040G", "G29764A"]}}}]}]}]}]}, {"name": "NODE_0000704", "node_attrs": {"div": 34, "num_date": {"value": 2021.2472831579198, "confidence": [2020.9669717725303, 2021.4684240264012]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000194", "node_attrs": {"div": 35, "num_date": {"value": 2021.3213451282365, "confidence": [2021.0116162363197, 2021.482628882811]}}, "branch_attrs": {"mutations": {"nuc": ["C29509T"]}}, "children": [{"name": "IND/GBRC1292/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_x": {"value": 20.141836413591005}, "umap_x": {"value": 1.7911438}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.183264}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.124820260384079}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.328761166836884}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.832994677164955}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "India"}, "mds2": {"value": -1.8264137913547025}, "mds3": {"value": 26.881335218573795}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -2.9179012304044014}}, "branch_attrs": {"mutations": {"nuc": ["C6883T", "G8368T", "C9515T", "C15738T", "C21846T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}}, {"name": "NODE_0000195", "node_attrs": {"div": 37, "num_date": {"value": 2021.415598723641, "confidence": [2021.1097835345236, 2021.5391995901045]}}, "branch_attrs": {"mutations": {"nuc": ["A11456G", "G29050A"]}}, "children": [{"name": "USA/RI-CDCBI-RIDOH_5JOJY6TPJUW5XCXG/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6068493150685, "confidence": [2021.6068493150685, 2021.6068493150685]}, "tsne_x": {"value": 18.071763202606352}, "umap_x": {"value": 0.45914733}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.275187}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 45.99931555688119}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.64156332137495}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -18.520369255233284}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Rhode Island"}, "mds2": {"value": -3.199762866239111}, "mds3": {"value": 34.00955118704318}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.0452582118074905}}, "branch_attrs": {"mutations": {"nuc": ["C5628T", "G8834A", "C10969T", "T15597C", "C20178T", "C25463T", "C29750T"]}}}, {"name": "NODE_0000196", "node_attrs": {"div": 39, "num_date": {"value": 2021.4974420606663, "confidence": [2021.2151531214508, 2021.6192479715933]}}, "branch_attrs": {"mutations": {"nuc": ["T23284C", "C25339T"]}}, "children": [{"name": "NODE_0000708", "node_attrs": {"div": 39, "num_date": {"value": 2021.5125920390308, "confidence": [2021.218874869689, 2021.6333032798318]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21342808240_S54_L001/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.9356164383562, "confidence": [2021.9356164383562, 2021.9356164383562]}, "tsne_x": {"value": 17.39047720516062}, "umap_x": {"value": -1.0200216}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.837631}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 31.41077225134011}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.36167601139}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -31.011099046156925}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": 14.877608573111797}, "mds3": {"value": 27.06377305929502}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 19.38367631799698}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "T1871G", "A2903G", "T6760G", "G19870T", "G19947T", "A21625G", "A21987G", "G25606A", "A27721-", "T27722-", "T28078C", "C28146T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "USA/NY-CDC-ASC210426900/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.8753424657534, "confidence": [2021.8753424657534, 2021.8753424657534]}, "tsne_x": {"value": 17.430129116382123}, "umap_x": {"value": -1.4624848}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.634527}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.993668986632597}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.3.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.586553421387505}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.703229567674256}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New York"}, "mds2": {"value": 15.442262543105157}, "mds3": {"value": 29.117945550336746}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.001671731728231}}, "branch_attrs": {"mutations": {"nuc": ["T2083C", "G5903T", "A6229G", "C6990T", "C9924T", "T12538C", "G15007A", "C20611T", "G21770A", "A22803G", "A26021C", "T29742G"], "S": ["V70I", "Q414R"]}, "labels": {"aa": "S: V70I, Q414R"}}}]}, {"name": "NODE_0000197", "node_attrs": {"div": 42, "num_date": {"value": 2021.6063205815228, "confidence": [2021.4629157537781, 2021.7]}}, "branch_attrs": {"mutations": {"nuc": ["G3644T", "C18115T", "C20199T"]}}, "children": [{"name": "USA/CA-CCPHL-701/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.7438356164384, "confidence": [2021.7438356164384, 2021.7438356164384]}, "tsne_x": {"value": 17.403326159234947}, "umap_x": {"value": 1.0858604}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.476545}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 44.84245063089077}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.3.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.69369202081766}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -19.69994184555903}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "USA"}, "mds2": {"value": -13.979868997310982}, "mds3": {"value": 27.294714779916024}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 25.034314431764425}}, "branch_attrs": {"mutations": {"nuc": ["A7444G", "A10486G", "G13124A", "T26532G", "A28225G"]}}}, {"name": "USA/NC-CDC-LC0277831/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7, "confidence": [2021.7, 2021.7]}, "tsne_x": {"value": 17.444905228923275}, "umap_x": {"value": 0.30287772}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.26785}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.768183193675536}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.3.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.601748507108049}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.80810412291019}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "North Carolina"}, "mds2": {"value": 2.88401295347108}, "mds3": {"value": 33.345764308946805}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 14.927314915575284}}, "branch_attrs": {"mutations": {"nuc": ["A10303T"]}}}]}]}]}]}, {"name": "NODE_0000203", "node_attrs": {"div": 36, "num_date": {"value": 2021.4123549957794, "confidence": [2021.0847445630127, 2021.5819641053906]}}, "branch_attrs": {"mutations": {"nuc": ["G26107C", "A27507C"]}}, "children": [{"name": "NODE_0000712", "node_attrs": {"div": 36, "num_date": {"value": 2021.415961070215, "confidence": [2021.121357938727, 2021.6083751765534]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-FG-146664/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_x": {"value": 17.77911200394962}, "umap_x": {"value": 0.84037936}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.370407}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.293931473596051}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.416080159470615}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.998590721573976}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "California"}, "mds2": {"value": 7.636497451412899}, "mds3": {"value": 23.49182062324551}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.4762341149793885}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "A5320G", "T8986C", "T12496C", "G16330A", "C21897T", "T26677C"], "S": ["S112L"]}, "labels": {"aa": "S: S112L"}}}, {"name": "NODE_0000204", "node_attrs": {"div": 38, "num_date": {"value": 2021.5626122454623, "confidence": [2021.323747510379, 2021.6826865959677]}}, "branch_attrs": {"mutations": {"nuc": ["G12801A", "G22801T"]}}, "children": [{"name": "USA/MP-CDC-2-5722422/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.9876712328767, "confidence": [2021.9876712328767, 2021.9876712328767]}, "tsne_x": {"value": 17.6299779227926}, "umap_x": {"value": 1.8386446}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.427626}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -1.906324797315724}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.630122276238708}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -27.158366113047336}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Northern Mariana Islands"}, "mds2": {"value": 5.967595154954903}, "mds3": {"value": 16.187909880706133}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 40.78006686306169}}, "branch_attrs": {"mutations": {"nuc": ["A1194C", "A1992G", "C3040T", "T4054C", "C14583T", "C15857T", "C17550T"]}}}, {"name": "USA/TX-CDC-ASC210323781/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7465753424658, "confidence": [2021.7465753424658, 2021.7465753424658]}, "tsne_x": {"value": 17.60325698106274}, "umap_x": {"value": 0.16706508}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.325367}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.862676870709595}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.33879541318571}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.02759340282808}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Texas"}, "mds2": {"value": 7.136408326131748}, "mds3": {"value": 22.9445461946366}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.862039848558912}}, "branch_attrs": {"mutations": {"nuc": ["A11917C", "G12223T", "C16338T", "A21987G", "C25350T", "A25934T"], "S": ["D142G", "P1263L"]}, "labels": {"aa": "S: D142G, P1263L"}}}]}]}, {"name": "NODE_0000206", "node_attrs": {"div": 38, "num_date": {"value": 2021.4986270660668, "confidence": [2021.1856735083982, 2021.5934686374674]}}, "branch_attrs": {"mutations": {"nuc": ["A3948G", "G11562T"]}}, "children": [{"name": "NODE_0000716", "node_attrs": {"div": 38, "num_date": {"value": 2021.5099851234759, "confidence": [2021.1942342698776, 2021.609264379733]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-CDC-ASC210451600/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_x": {"value": 16.646193907661957}, "umap_x": {"value": -1.179729}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.768835}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.788478500965465}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.478634621163778}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.266641147914974}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Minnesota"}, "mds2": {"value": 10.15998529230022}, "mds3": {"value": 29.89009423528493}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.982222560665616}}, "branch_attrs": {"mutations": {"nuc": ["C3768T", "A5871G", "G14443T", "C25693A", "C25810T", "A27345T", "G27556T", "C29095T", "C29708T"]}}}, {"name": "USA/IN-CDC-QDX30901165/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.8479452054794, "confidence": [2021.8479452054794, 2021.8479452054794]}, "tsne_x": {"value": 16.627302541878237}, "umap_x": {"value": -1.4649974}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.62368}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.603255695837076}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.391131312457828}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -36.298334440918296}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Indiana"}, "mds2": {"value": 9.516211795552223}, "mds3": {"value": 27.640531966464906}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5457005877441524}}, "branch_attrs": {"mutations": {"nuc": ["T2537G", "G2564A", "C13011T", "G15285T", "A24730G", "C27575T", "T28382C", "A29079C", "C29304A", "C29666A"]}}}]}, {"name": "NODE_0000718", "node_attrs": {"div": 38, "num_date": {"value": 2021.509607709641, "confidence": [2021.189913307526, 2021.5977498713469]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NE-000415/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6479452054793, 2021.6479452054793]}, "tsne_x": {"value": 16.8054220416998}, "umap_x": {"value": -0.3703492}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.007944}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.656708189277571}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.365734474285166}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.775389848659}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nebraska"}, "mds2": {"value": -5.952615298258838}, "mds3": {"value": 36.217241029362}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 28.67965867793152}}, "branch_attrs": {"mutations": {"nuc": ["G2648A", "G3638T", "T8764C", "G11083T", "G11401C", "C12473T", "G23611T"]}}}, {"name": "NODE_0000209", "node_attrs": {"div": 39, "num_date": {"value": 2021.5613879265482, "confidence": [2021.3128463843298, 2021.6592522202966]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "CHL/AR-UFRO-0098/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7465753424658, "confidence": [2021.7465753424658, 2021.7465753424658]}, "tsne_x": {"value": 16.97322340122117}, "umap_x": {"value": 0.7180025}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.336512}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 29.79626151116579}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.292533492978464}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -29.46112850341521}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Chile"}, "mds2": {"value": 6.415120785007918}, "mds3": {"value": 23.22149809935225}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.852538555141697}}, "branch_attrs": {"mutations": {"nuc": ["C32A", "G3065A", "C6363T", "A8026T", "A15008G"]}}}, {"name": "NODE_0000210", "node_attrs": {"div": 41, "num_date": {"value": 2021.6804614785199, "confidence": [2021.5981403368762, 2021.7305131819364]}}, "branch_attrs": {"mutations": {"nuc": ["G2564A", "T9421C"]}}, "children": [{"name": "CHL/AR-UFRO-0052/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7465753424658, "confidence": [2021.7465753424658, 2021.7465753424658]}, "tsne_x": {"value": 16.939094496012224}, "umap_x": {"value": 1.4531487}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.38239}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 32.63193016095546}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.30979589400852}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -27.609302746166463}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Chile"}, "mds2": {"value": 5.303601947657247}, "mds3": {"value": 20.599802868003263}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.7487317523601416}}, "branch_attrs": {"mutations": {"nuc": ["C16726T", "A24410G"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "CHL/AR-UFRO-0175/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7849315068493, "confidence": [2021.7849315068493, 2021.7849315068493]}, "tsne_x": {"value": 16.97039567736573}, "umap_x": {"value": 1.3095665}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.20405}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 14.640128197033569}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.25.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.30408284841766}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.666667510900407}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Chile"}, "mds2": {"value": -2.8696087685641287}, "mds3": {"value": 19.063852695999923}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -10.79900758454222}}, "branch_attrs": {"mutations": {"nuc": ["C13862T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000842", "node_attrs": {"div": 34, "num_date": {"value": 2021.1666153273256, "confidence": [2020.9769714575016, 2021.324429723279]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000214", "node_attrs": {"div": 36, "num_date": {"value": 2021.2590659729087, "confidence": [2021.0923335828386, 2021.473540272348]}}, "branch_attrs": {"mutations": {"nuc": ["G526T", "C19524T"]}}, "children": [{"name": "NODE_0000215", "node_attrs": {"div": 41, "num_date": {"value": 2021.5870700447772, "confidence": [2021.4276275297213, 2021.6549236370388]}}, "branch_attrs": {"mutations": {"nuc": ["C3811T", "A4333G", "G11417T", "G25049T", "G29736C"], "S": ["D1163Y"]}, "labels": {"aa": "S: D1163Y"}}, "children": [{"name": "OX992717", "node_attrs": {"div": 45, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_x": {"value": 20.55097948735763}, "umap_x": {"value": -0.2248571}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.212475}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.893237863690997}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.98"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.372557384662477}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.63085444301865}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -8.198488403320876}, "mds3": {"value": 23.47446920248084}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.094873385907869}}, "branch_attrs": {"mutations": {"nuc": ["G4218A", "A18971T", "A21987G", "C24198T"], "S": ["D142G", "A879V"]}, "labels": {"aa": "S: D142G, A879V"}}}, {"name": "OU736650", "node_attrs": {"div": 44, "num_date": {"value": 2021.6972602739727, "confidence": [2021.6972602739727, 2021.6972602739727]}, "tsne_x": {"value": 20.55507748472201}, "umap_x": {"value": -0.47872403}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.126648}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.57812616184844}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.98"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.400421200123532}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.96443346219664}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": 1.400548481341234}, "mds3": {"value": 33.184318481401505}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5742449639177722}}, "branch_attrs": {"mutations": {"nuc": ["G2600T", "T9557C", "G24095T"], "S": ["A845S"]}, "labels": {"aa": "S: A845S"}}}]}, {"name": "NODE_0000845", "node_attrs": {"div": 36, "num_date": {"value": 2021.3256449101966, "confidence": [2021.0839342381782, 2021.4810764458782]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU377991", "node_attrs": {"div": 44, "num_date": {"value": 2021.4835616438356, "confidence": [2021.4835616438356, 2021.4835616438356]}, "tsne_x": {"value": 20.291013506495368}, "umap_x": {"value": -0.4750286}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.187088}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.563601475928709}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.98"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.215806059283274}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.43934955299627}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": 6.048507654380828}, "mds3": {"value": 25.36634348436109}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5648405055419911}}, "branch_attrs": {"mutations": {"nuc": ["A5896G", "C7732T", "G18781T", "A20382G", "G22899T", "G24933T", "C25452G", "A25841T"], "S": ["G446V", "G1124V"]}, "labels": {"aa": "S: G446V, G1124V"}}}, {"name": "NODE_0000847", "node_attrs": {"div": 36, "num_date": {"value": 2021.3522592013933, "confidence": [2021.0885626528993, 2021.5475169970937]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV044013", "node_attrs": {"div": 49, "num_date": {"value": 2021.8397260273973, "confidence": [2021.8397260273973, 2021.8397260273973]}, "tsne_x": {"value": 20.37590439321174}, "umap_x": {"value": -1.455558}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.656645}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.845913419087866}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.98.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.262115617410622}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -37.53517700892547}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": 9.603190049051353}, "mds3": {"value": 27.58626784263471}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5904506121006174}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "G2518T", "C3686A", "G5437T", "C7768T", "A7854G", "T8835C", "T10141C", "G11083T", "T15521A", "C22314T", "T27484C", "G28086T"], "S": ["P251L"]}, "labels": {"aa": "S: P251L"}}}, {"name": "OV127270", "node_attrs": {"div": 40, "num_date": {"value": 2021.8506849315067, "confidence": [2021.8506849315067, 2021.8506849315067]}, "tsne_x": {"value": 19.98289328709792}, "umap_x": {"value": 1.27701}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.071495}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.846364904936921}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.98"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.860664956714794}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.3251333725558}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": 3.0156793318191184}, "mds3": {"value": 24.09307131518032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5665194004770446}}, "branch_attrs": {"mutations": {"nuc": ["A11246G", "C20451T", "G25489T", "C28289A"]}}}]}]}]}, {"name": "NODE_0000850", "node_attrs": {"div": 34, "num_date": {"value": 2021.184254470032, "confidence": [2020.9762892341469, 2021.330814308935]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000853", "node_attrs": {"div": 34, "num_date": {"value": 2021.1999042527368, "confidence": [2020.976405516412, 2021.3371543768833]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000187", "node_attrs": {"div": 36, "num_date": {"value": 2021.3287940808616, "confidence": [2021.1469298232273, 2021.4562147490233]}}, "branch_attrs": {"mutations": {"nuc": ["G13812T", "C25413T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-D041/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5109589041097, "confidence": [2021.5109589041097, 2021.5109589041097]}, "tsne_x": {"value": 19.067151139029978}, "umap_x": {"value": 2.0215747}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.349062}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.6744695185738627}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.74543340911543}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.852204876043512}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.4657897026619551}, "mds3": {"value": 27.088174971365863}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 3.2590171513253687}}, "branch_attrs": {"mutations": {"nuc": ["A22320G", "T26099C", "T27502G"], "S": ["D253G"]}, "labels": {"aa": "S: D253G"}}}, {"name": "NODE_0000188", "node_attrs": {"div": 37, "num_date": {"value": 2021.4141242990834, "confidence": [2021.2322165406226, 2021.48445032108]}}, "branch_attrs": {"mutations": {"nuc": ["G8863T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-D040/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": 18.71409185147873}, "umap_x": {"value": 2.169534}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.291569}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.865959569758287}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.170087899423894}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.626767740945983}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -4.4676007869847645}, "mds3": {"value": 27.07336971561314}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 6.355960487413093}}, "branch_attrs": {"mutations": {"nuc": ["T18435C", "C23757T", "G29810T"], "S": ["T732I"]}, "labels": {"aa": "S: T732I"}}}, {"name": "NODE_0000857", "node_attrs": {"div": 37, "num_date": {"value": 2021.4536832788451, "confidence": [2021.2098964902134, 2021.5343115410294]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000192", "node_attrs": {"div": 38, "num_date": {"value": 2021.5136164882692, "confidence": [2021.3257708401013, 2021.624696107561]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-AD55/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7602739726028, "confidence": [2021.7602739726028, 2021.7602739726028]}, "tsne_x": {"value": 18.487141081546472}, "umap_x": {"value": 1.5184386}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.463774}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.917230071602824}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.120414342489228}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.18384145126769}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -4.609049418897467}, "mds3": {"value": 31.19683398449215}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -13.270026117495528}}, "branch_attrs": {"mutations": {"nuc": ["C5672T", "G22708C", "G29260T", "G29511T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AD85/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7602739726028, "confidence": [2021.7602739726028, 2021.7602739726028]}, "tsne_x": {"value": 23.2000498145723}, "umap_x": {"value": 1.3393319}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.527617}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.9883589740026488}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.286129479012295}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.904288700844702}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -12.877917967683905}, "mds3": {"value": 26.748890601985803}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -11.29452607257656}}, "branch_attrs": {"mutations": {"nuc": ["C5784T", "T5977C", "A7507G", "A19397C", "-22029A", "-22030G", "G22917T", "T27257C", "C27942T"], "S": ["X156E", "R452L"]}, "labels": {"aa": "S: X156E, R452L"}}}]}, {"name": "NODE_0000860", "node_attrs": {"div": 37, "num_date": {"value": 2021.4956871473162, "confidence": [2021.2080487493668, 2021.5309124247833]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z568/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5630136986301, "confidence": [2021.5630136986301, 2021.5630136986301]}, "tsne_x": {"value": 18.969532242603364}, "umap_x": {"value": 1.7149557}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.072231}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 42.81356340988137}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.095471513395244}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -25.57650379629681}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.5784926576191132}, "mds3": {"value": 23.639166248257222}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 7.066838541945889}}, "branch_attrs": {"mutations": {"nuc": ["A8684G", "C12786T", "T26300G"]}}}, {"name": "NODE_0000861", "node_attrs": {"div": 37, "num_date": {"value": 2021.5081144604046, "confidence": [2021.211690043161, 2021.5612121723052]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-I458/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_x": {"value": 18.91660005349357}, "umap_x": {"value": 2.0540216}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.311497}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.950743003352353}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.889079875306004}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.69774269078318}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": 0.6066888911631722}, "mds3": {"value": 27.13726360526018}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.994269020797358}}, "branch_attrs": {"mutations": {"nuc": ["T20592C", "A25360G"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-H348/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.650684931507, "confidence": [2021.650684931507, 2021.650684931507]}, "tsne_x": {"value": 18.32257225688342}, "umap_x": {"value": 1.0835714}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.448368}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.100884684454282}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.154845070749763}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.69021308506054}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -6.456937725708026}, "mds3": {"value": 33.00322281548178}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.651163575407556}}, "branch_attrs": {"mutations": {"nuc": ["C300T", "C1909T", "G3728T", "T13243C", "-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "C24358A", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A", "C29642T"], "S": ["X156E", "-157F", "X158R", "X1274*"]}, "labels": {"aa": "S: X156E, -157F, X158R, X1274*"}}}]}]}]}]}]}, {"name": "NODE_0000862", "node_attrs": {"div": 34, "num_date": {"value": 2021.2102999847993, "confidence": [2020.9770876599375, 2021.3471555105648]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0439/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_x": {"value": 19.823220383446085}, "umap_x": {"value": 1.4179533}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.186394}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.30546203681556}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.765605713200848}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -27.70923705477876}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": 1.497923988702509}, "mds3": {"value": 22.86423385612521}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.377697157095907}}, "branch_attrs": {"mutations": {"nuc": ["C8655T", "G18498T", "T19215C", "G20433T", "G28079T", "C29197T", "C29514A"]}}}, {"name": "NODE_0000864", "node_attrs": {"div": 34, "num_date": {"value": 2021.2413251253474, "confidence": [2020.9733984073891, 2021.3596862895533]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000243", "node_attrs": {"div": 38, "num_date": {"value": 2021.3769763231141, "confidence": [2021.159869760402, 2021.468776209641]}}, "branch_attrs": {"mutations": {"nuc": ["C9144T", "C10279T", "C22783T", "C27128T"]}}, "children": [{"name": "NZL/21MV0708/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.6178082191782, "confidence": [2021.6178082191782, 2021.6178082191782]}, "tsne_x": {"value": 20.67084697141149}, "umap_x": {"value": -0.9426466}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.837397}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 55.56815494756127}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 10.673212048540345}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -19.982607789287734}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -12.85924244849453}, "mds3": {"value": 36.05546849373056}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -0.7469293423846457}}, "branch_attrs": {"mutations": {"nuc": ["C6031T", "C6543T", "G11083T", "T11542C", "C12781T", "C13026T", "G22225T", "C23127T", "G27074T", "C29640T"], "S": ["A522V"]}, "labels": {"aa": "S: A522V"}}}, {"name": "NODE_0000244", "node_attrs": {"div": 40, "num_date": {"value": 2021.5223387479873, "confidence": [2021.466540356843, 2021.5433254665074]}}, "branch_attrs": {"mutations": {"nuc": ["G3638A", "G27987T"]}}, "children": [{"name": "NZL/21MV0614/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5438356164384, "confidence": [2021.5438356164384, 2021.5438356164384]}, "tsne_x": {"value": 18.9331627741072}, "umap_x": {"value": 1.2880423}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.318039}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.636243755075185}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.377715895451772}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -20.4850369076238}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.0300571805962064}, "mds3": {"value": 30.46992020209172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5944156161406116}}, "branch_attrs": {"mutations": {"nuc": ["C11884T"]}}}, {"name": "NZL/21MV0639/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5767123287671, "confidence": [2021.5767123287671, 2021.5767123287671]}, "tsne_x": {"value": 19.114296822201904}, "umap_x": {"value": 1.92336}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.140867}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29382589949787}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.361999061667282}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -23.1397752796555}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -0.5194497054036763}, "mds3": {"value": 25.382073551383723}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.378279266168741}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000868", "node_attrs": {"div": 34, "num_date": {"value": 2021.2472807644306, "confidence": [2020.9951986360913, 2021.3710860067242]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000268", "node_attrs": {"div": 37, "num_date": {"value": 2021.378349799359, "confidence": [2021.1490056356017, 2021.4489037801168]}}, "branch_attrs": {"mutations": {"nuc": ["C6040T", "T14014G", "A29700G"]}}, "children": [{"name": "NODE_0000269", "node_attrs": {"div": 39, "num_date": {"value": 2021.4954821401734, "confidence": [2021.3323639813707, 2021.595661636303]}}, "branch_attrs": {"mutations": {"nuc": ["G20131T", "G29554T"]}}, "children": [{"name": "USA/OK-CDC-LC0273551/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_x": {"value": 18.267475711008288}, "umap_x": {"value": 1.749826}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.153227}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.28268106454648}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.549302443526644}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.45898497437295}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Oklahoma"}, "mds2": {"value": 3.3556630052373806}, "mds3": {"value": 23.749992928552928}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 29.436882338029594}}, "branch_attrs": {"mutations": {"nuc": ["T6040C", "T8662C", "C12005T", "C19113T", "C29445T"]}}}, {"name": "NODE_0000872", "node_attrs": {"div": 39, "num_date": {"value": 2021.5264980989725, "confidence": [2021.3412556076596, 2021.6153313549817]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AK-PHL13353/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.686301369863, "confidence": [2021.686301369863, 2021.686301369863]}, "tsne_x": {"value": 17.73237667773244}, "umap_x": {"value": 0.9101589}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.268171}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 37.46926519435478}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.301085824001426}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -28.105154895198137}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Alaska"}, "mds2": {"value": 3.818735705197904}, "mds3": {"value": 24.830709495897008}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.319928116624087}}, "branch_attrs": {"mutations": {"nuc": ["G8264A", "C20429T", "A21987G", "G26439T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "USA/MI-CDC-ATM-T4Y3HY3NZ/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.817808219178, "confidence": [2021.817808219178, 2021.817808219178]}, "tsne_x": {"value": 17.68589290726007}, "umap_x": {"value": -0.5196237}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.023344}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.844902059070804}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.17879145918192}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.81116274333228}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Michigan"}, "mds2": {"value": 8.069704607738048}, "mds3": {"value": 27.50568509593113}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.91883471903918}}, "branch_attrs": {"mutations": {"nuc": ["G185T", "A11595G", "G11596T", "C15180T", "A19831G", "C24378T"], "S": ["S939F"]}, "labels": {"aa": "S: S939F"}}}]}]}, {"name": "NODE_0000271", "node_attrs": {"div": 38, "num_date": {"value": 2021.4119431345443, "confidence": [2021.248143586179, 2021.458904109589]}}, "branch_attrs": {"mutations": {"nuc": ["C7926T"]}}, "children": [{"name": "USA/CO-CDC-MMB09185153/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_x": {"value": 17.656908287131863}, "umap_x": {"value": 2.0219793}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.267515}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.881963494775581}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.326134601211274}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.04047521086949}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Colorado"}, "mds2": {"value": 1.6363342285118645}, "mds3": {"value": 26.46174277185818}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -1.844933650159548}}, "branch_attrs": {"mutations": {"nuc": ["G3328T"]}}}, {"name": "NODE_0000272", "node_attrs": {"div": 40, "num_date": {"value": 2021.4692079895574, "confidence": [2021.4061761437467, 2021.5103239516598]}}, "branch_attrs": {"mutations": {"nuc": ["C16726T", "G28073T"]}}, "children": [{"name": "USA/AZ-CDC-LC0346337/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.804109589041, "confidence": [2021.804109589041, 2021.804109589041]}, "tsne_x": {"value": 17.17168269138895}, "umap_x": {"value": -0.15604964}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.126713}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.908577095027596}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.0135214189704}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.96074558726484}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Arizona"}, "mds2": {"value": 4.189131847359042}, "mds3": {"value": 33.179110240600714}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 7.962778810979223}}, "branch_attrs": {"mutations": {"nuc": ["A11746C", "C17502T", "C23029T", "C28567T"]}}}, {"name": "NODE_0000273", "node_attrs": {"div": 41, "num_date": {"value": 2021.4959940622193, "confidence": [2021.462123114066, 2021.5246579782147]}}, "branch_attrs": {"mutations": {"nuc": ["C6638T"]}}, "children": [{"name": "NODE_0000753", "node_attrs": {"div": 41, "num_date": {"value": 2021.519260592109, "confidence": [2021.474343922321, 2021.567547719282]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-FG-097776/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.63698630137, "confidence": [2021.63698630137, 2021.63698630137]}, "tsne_x": {"value": 17.181192189430394}, "umap_x": {"value": 0.009203369}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.225342}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.182731876497504}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.019679912154697}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -28.92244142540383}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "California"}, "mds2": {"value": 5.765718490519045}, "mds3": {"value": 27.09956597453986}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.878733683834684}}, "branch_attrs": {"mutations": {"nuc": ["G515-", "T516-", "T517-", "G7328T"]}}}, {"name": "USA/FL-CDC-STM-000716782/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5876712328768, "confidence": [2021.5876712328768, 2021.5876712328768]}, "tsne_x": {"value": 17.167521011239945}, "umap_x": {"value": 0.17580517}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.255747}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.502233507696886}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.016046853070952}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -28.509184604049405}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Florida"}, "mds2": {"value": 6.393822965392191}, "mds3": {"value": 27.300220367022256}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -19.074814502384065}}, "branch_attrs": {"mutations": {"nuc": ["C27149A", "C27849T"]}}}]}, {"name": "NODE_0000275", "node_attrs": {"div": 43, "num_date": {"value": 2021.5328767123287, "confidence": [2021.512094142972, 2021.5328767123287]}}, "branch_attrs": {"mutations": {"nuc": ["G28460A", "G29593T"]}}, "children": [{"name": "USA/CA-CDC-FG-042624/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_x": {"value": 17.165355928363677}, "umap_x": {"value": 0.1563098}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.280209}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.385152760530764}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.01186182392172}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.74440370909549}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "California"}, "mds2": {"value": 6.152568892855723}, "mds3": {"value": 28.958022743080807}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.193318624248535}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/KS-CDC-LC0364252/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.8123287671233, "confidence": [2021.8123287671233, 2021.8123287671233]}, "tsne_x": {"value": 17.072756009858548}, "umap_x": {"value": -0.6336957}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.915419}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.374214315974193}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 10.933922231629795}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.24711362124507}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kansas"}, "mds2": {"value": 10.471320842897768}, "mds3": {"value": 26.691750220570672}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.327740625070313}}, "branch_attrs": {"mutations": {"nuc": ["C335T", "G11332T", "T23227C"]}}}]}]}]}, {"name": "NODE_0000877", "node_attrs": {"div": 38, "num_date": {"value": 2021.4301973190595, "confidence": [2021.2498435509622, 2021.4915007833692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-CDC-4305203-001/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_x": {"value": 17.443136083305326}, "umap_x": {"value": 0.5721049}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.29861}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.310820782700733}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.200172097971588}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.446793846333662}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Texas"}, "mds2": {"value": 2.466736816632561}, "mds3": {"value": 30.78171330166888}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -1.25449724221712}}, "branch_attrs": {"mutations": {"nuc": ["G10523T", "T22042C", "C23997T", "T29760A"], "S": ["P812L"]}, "labels": {"aa": "S: P812L"}}}, {"name": "NODE_0000878", "node_attrs": {"div": 38, "num_date": {"value": 2021.4952255743895, "confidence": [2021.1945125444659, 2021.606078449155]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000278", "node_attrs": {"div": 43, "num_date": {"value": 2021.680795930353, "confidence": [2021.5085568361158, 2021.7716294053398]}}, "branch_attrs": {"mutations": {"nuc": ["C449T", "C2570T", "C5312A", "C14821T", "C18483T"]}}, "children": [{"name": "USA/MN-CDC-IBX184035711800/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.831506849315, "confidence": [2021.831506849315, 2021.831506849315]}, "tsne_x": {"value": 16.80618620009103}, "umap_x": {"value": -0.6090228}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.915995}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.456732523758084}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.13700079529242}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -17.9614660900337}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Minnesota"}, "mds2": {"value": -1.7508785349852096}, "mds3": {"value": 38.55994507853458}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.845624366804274}}, "branch_attrs": {"mutations": {"nuc": ["C15540T", "C19011T", "C19164T", "A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "USA/MA-CDCBI-CRSP_QHP3JQUQEP2JDFAY/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8287671232877, "confidence": [2021.8287671232877, 2021.8287671232877]}, "tsne_x": {"value": 16.7820175370555}, "umap_x": {"value": -1.1700921}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.733086}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.799179290569557}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.128054478993484}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.517024269867445}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 2.0544646400408366}, "mds3": {"value": 39.34249433436797}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -12.076299259022894}}, "branch_attrs": {"mutations": {"nuc": ["C340T", "A4231C", "T27587A", "C29367T"]}}}]}, {"name": "NODE_0000881", "node_attrs": {"div": 38, "num_date": {"value": 2021.5256237117674, "confidence": [2021.3310400975897, 2021.609589041096]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/OR-CDC-LC0182254/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.609589041096, "confidence": [2021.609589041096, 2021.609589041096]}, "tsne_x": {"value": 17.941608374101374}, "umap_x": {"value": 2.4804304}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.125612}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.126951268634285}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.488039169887388}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.194397677798385}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Oregon"}, "mds2": {"value": 0.1543766157687322}, "mds3": {"value": 24.265519124193247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 28.46830133486665}}, "branch_attrs": {"mutations": {"nuc": ["C28236T"]}}}, {"name": "NODE_0000882", "node_attrs": {"div": 38, "num_date": {"value": 2021.5629689978573, "confidence": [2021.3327328446348, 2021.6464982585262]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/SC-COVID21-5384/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_x": {"value": 17.422075627042936}, "umap_x": {"value": 0.7875942}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.309599}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.3761949448663655}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.211447259918888}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.668154905770265}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Carolina"}, "mds2": {"value": 3.8909289555907054}, "mds3": {"value": 30.24205087876208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.7621508822228575}}, "branch_attrs": {"mutations": {"nuc": ["T1867C", "C8917T", "G12191T", "C17163T", "A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "USA/WA-CDC-LC0328626/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7438356164384, "confidence": [2021.7438356164384, 2021.7438356164384]}, "tsne_x": {"value": 17.441322130774108}, "umap_x": {"value": 0.3283168}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.30038}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.1460006850000095}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.44"}, "tsne_y": {"value": 11.196591244000224}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.508142608422293}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Washington"}, "mds2": {"value": 2.0217162825390607}, "mds3": {"value": 33.456058089464406}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 17.874037145733197}}, "branch_attrs": {"mutations": {"nuc": ["A372T", "C11173T", "C11575T", "G29702A", "G29757T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000883", "node_attrs": {"div": 34, "num_date": {"value": 2021.2661303697942, "confidence": [2021.0210313276727, 2021.3792547704306]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000891", "node_attrs": {"div": 34, "num_date": {"value": 2021.2807874089353, "confidence": [2021.0250057165406, 2021.3873554076135]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000896", "node_attrs": {"div": 34, "num_date": {"value": 2021.322175725088, "confidence": [2021.0296686263018, 2021.431257553694]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000898", "node_attrs": {"div": 34, "num_date": {"value": 2021.3463327527813, "confidence": [2021.0303547062324, 2021.433089964602]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-M868/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.472602739726, "confidence": [2021.472602739726, 2021.472602739726]}, "tsne_x": {"value": 19.868686086970985}, "umap_x": {"value": 2.5634851}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.993513}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 16.346146158148954}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.70855439372064}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.1984840209493}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -0.96443844047907}, "mds3": {"value": 22.422837025229967}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.521889584202278}}, "branch_attrs": {"mutations": {"nuc": ["G2336A", "G17331T", "C22971T"], "S": ["T470I"]}, "labels": {"aa": "S: T470I"}}}, {"name": "NZL/21MV0488/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4369863013699, "confidence": [2021.4369863013699, 2021.4369863013699]}, "tsne_x": {"value": 19.846608946976243}, "umap_x": {"value": 2.444119}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.98146}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29411084383874}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.88225981942559}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -23.23664684037604}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -0.5843323505914141}, "mds3": {"value": 22.96827277517886}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.356558277073892}}, "branch_attrs": {"mutations": {"nuc": ["A652G", "C815T", "C2388T", "T27796C"]}}}]}, {"name": "NODE_0000232", "node_attrs": {"div": 35, "num_date": {"value": 2021.5255179131257, "confidence": [2021.1731891517816, 2021.8001397655944]}}, "branch_attrs": {"mutations": {"nuc": ["T2125C"]}}, "children": [{"name": "VNM/OUCRU-NHTD326/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_x": {"value": 19.68231673452341}, "umap_x": {"value": 2.0901308}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.278088}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.485041377500084}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.79"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.254480925172114}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.044104699538124}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Vietnam"}, "mds2": {"value": -0.0422531680910244}, "mds3": {"value": 27.34147336971408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.349550739608116}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C5946A", "A9153G", "C26873T", "C28291T"]}}}, {"name": "MYS/M_C15886/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.9739726027397, "confidence": [2021.9739726027397, 2021.9739726027397]}, "tsne_x": {"value": 20.20961119246481}, "umap_x": {"value": 0.20939617}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.277412}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.234910744368868}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.79"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.474579806102833}, "country": {"value": "Malaysia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.382413969257723}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Malaysia"}, "mds2": {"value": -4.1145687393456205}, "mds3": {"value": 34.94661852471483}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 18.45305517772849}}, "branch_attrs": {"mutations": {"nuc": ["G376T", "C4039T", "C7162T", "C14877T", "G21718T", "G22793T", "G22917A", "T26848C", "G29711T"], "S": ["Q52H", "A411S", "R452Q"]}, "labels": {"aa": "S: Q52H, A411S, R452Q"}}}]}]}, {"name": "NODE_0000900", "node_attrs": {"div": 34, "num_date": {"value": 2021.3207654470502, "confidence": [2021.0210013041033, 2021.398607540175]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000230", "node_attrs": {"div": 41, "num_date": {"value": 2021.4939920771349, "confidence": [2021.3449138007898, 2021.5590321981608]}}, "branch_attrs": {"mutations": {"nuc": ["G2944A", "G11365T", "G12718T", "T15882G", "A18675G", "G27566T", "C27629A"]}}, "children": [{"name": "Denmark/DCGC-156000/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6178082191782, "confidence": [2021.6178082191782, 2021.6178082191782]}, "tsne_x": {"value": 16.488024998433396}, "umap_x": {"value": -0.27808395}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.032131}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.950782713034325}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.7.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.403876159085486}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.86717147541357}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nordjylland"}, "mds2": {"value": 3.73447298190224}, "mds3": {"value": 35.42481607160395}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 17.78723360219107}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "C4320T", "C14802T", "C23625T"], "S": ["A688V"]}, "labels": {"aa": "S: A688V"}}}, {"name": "OU569639", "node_attrs": {"div": 44, "num_date": {"value": 2021.5876712328768, "confidence": [2021.5876712328768, 2021.5876712328768]}, "tsne_x": {"value": 16.634406980355294}, "umap_x": {"value": 0.83403796}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.334871}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.235481506373073}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.41007293443976}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.967838021217005}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": -8.561351391558787}, "mds3": {"value": 28.40610176296192}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.196752310754485}}, "branch_attrs": {"mutations": {"nuc": ["G3403T", "G22927T", "C27393T"], "S": ["L455F"]}, "labels": {"aa": "S: L455F"}}}]}, {"name": "NODE_0000902", "node_attrs": {"div": 34, "num_date": {"value": 2021.324430308006, "confidence": [2021.0238916225612, 2021.409092147837]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU414820", "node_attrs": {"div": 40, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": 19.878440808260684}, "umap_x": {"value": 1.273178}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.172806}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.618354096320867}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.5"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.981548921191632}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.7239985543434}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": 2.744328528824322}, "mds3": {"value": 23.89370616556081}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5516547158710425}}, "branch_attrs": {"mutations": {"nuc": ["A1220G", "C5628T", "C23625T", "G24821T", "G24928T", "C29253T"], "S": ["A688V", "A1087S"]}, "labels": {"aa": "S: A688V, A1087S"}}}, {"name": "NODE_0000903", "node_attrs": {"div": 34, "num_date": {"value": 2021.3463005073331, "confidence": [2021.1912578356867, 2021.4157417826846]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000907", "node_attrs": {"div": 34, "num_date": {"value": 2021.3571917094896, "confidence": [2021.1928756561858, 2021.4260273972602]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0059/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5465753424658, "confidence": [2021.5465753424658, 2021.5465753424658]}, "tsne_x": {"value": 19.81628699424723}, "umap_x": {"value": 2.2497427}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.089052}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29320134366407}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.23"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.719660721359984}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -22.265657015528863}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.0533343322844873}, "mds3": {"value": 24.545404745351696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.368197443199566}}, "branch_attrs": {"mutations": {"nuc": ["C1404T", "C4752T", "G8131T", "G25352T", "A28386G"], "S": ["V1264L"]}, "labels": {"aa": "S: V1264L"}}}, {"name": "OU357234", "node_attrs": {"div": 37, "num_date": {"value": 2021.4260273972602, "confidence": [2021.4260273972602, 2021.4260273972602]}, "tsne_x": {"value": 19.93144805120852}, "umap_x": {"value": 2.7017064}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.056746}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 61.75733603978139}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.99255207617965}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -19.61972098538632}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.7289843947117784}, "mds3": {"value": 20.739352178580617}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 10.20572515509094}}, "branch_attrs": {"mutations": {"nuc": ["A21447G", "A25076G", "A26096C"], "S": ["I1172V"]}, "labels": {"aa": "S: I1172V"}}}]}, {"name": "NODE_0000909", "node_attrs": {"div": 34, "num_date": {"value": 2021.3810900933847, "confidence": [2021.2557279445205, 2021.4778182083805]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NJ-CDC-LC0124861/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.5630136986301, "confidence": [2021.5630136986301, 2021.5630136986301]}, "tsne_x": {"value": 19.57483042211346}, "umap_x": {"value": 2.6830564}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.08965}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.355450452303966}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.558626398757294}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.379549942526484}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Jersey"}, "mds2": {"value": -0.6640618079363262}, "mds3": {"value": 21.597037084939164}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 30.538809477467453}}, "branch_attrs": {"mutations": {"nuc": ["C6196T", "T14014G"]}}}, {"name": "NODE_0000910", "node_attrs": {"div": 34, "num_date": {"value": 2021.414929323769, "confidence": [2021.2583596103498, 2021.4831003661736]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0626/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5493150684931, "confidence": [2021.5493150684931, 2021.5493150684931]}, "tsne_x": {"value": 19.81513974629138}, "umap_x": {"value": 2.2040713}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.983885}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.30074457487815}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.88"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.828463542980389}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -24.372307130629444}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.0389888105524303}, "mds3": {"value": 23.308284120163403}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.362260825099737}}, "branch_attrs": {"mutations": {"nuc": ["C2416T", "C9430T", "G20709T", "G26458T", "C28724T"]}}}, {"name": "NODE_0000913", "node_attrs": {"div": 34, "num_date": {"value": 2021.450564186844, "confidence": [2021.2631436311965, 2021.486301369863]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2102025745/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.7849315068493, "confidence": [2021.7849315068493, 2021.7849315068493]}, "tsne_x": {"value": 19.97770151727129}, "umap_x": {"value": 2.5138166}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.07296}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 39.11597835695361}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.884056501361092}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -18.93534994432678}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "USA"}, "mds2": {"value": -2.5719840845292623}, "mds3": {"value": 18.53154892688657}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 19.785660227926083}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0556/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.486301369863, "confidence": [2021.486301369863, 2021.486301369863]}, "tsne_x": {"value": 19.827126756542025}, "umap_x": {"value": 2.6425495}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.094646}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29350520753398}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.8053197106884}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -19.471129803419867}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.1700673442072518}, "mds3": {"value": 22.28449152953087}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.356699891884176}}, "branch_attrs": {"mutations": {"nuc": ["G13759A", "C17746T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000247", "node_attrs": {"div": 35, "num_date": {"value": 2021.3459652379684, "confidence": [2021.1267141708092, 2021.5122659215835]}}, "branch_attrs": {"mutations": {"nuc": ["C24208T"]}}, "children": [{"name": "USA/CA-CDPH-2000055530/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.8479452054794, "confidence": [2021.8479452054794, 2021.8479452054794]}, "tsne_x": {"value": 19.66184104078156}, "umap_x": {"value": 2.689637}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.131365}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.674758023219207}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 12.442648064983192}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.869740296236067}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "USA"}, "mds2": {"value": -0.2953719527084709}, "mds3": {"value": 22.625078180382644}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -9.41287904035286}}, "branch_attrs": {"mutations": {"nuc": ["C15T"]}}}, {"name": "NODE_0000248", "node_attrs": {"div": 36, "num_date": {"value": 2021.412258533053, "confidence": [2021.2099583932516, 2021.527193382076]}}, "branch_attrs": {"mutations": {"nuc": ["A17236G"]}}, "children": [{"name": "NODE_0000250", "node_attrs": {"div": 37, "num_date": {"value": 2021.454427822674, "confidence": [2021.2510719491283, 2021.5510354505243]}}, "branch_attrs": {"mutations": {"nuc": ["C18657T"]}}, "children": [{"name": "USA/MN-CDC-LC0147853/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5630136986301, "confidence": [2021.5630136986301, 2021.5630136986301]}, "tsne_x": {"value": 19.25652810376369}, "umap_x": {"value": 1.4560843}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.35546}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.012727640472767}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.677284858608276}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.13368471674952}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Minnesota"}, "mds2": {"value": -0.010960404806057}, "mds3": {"value": 30.70562118236757}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -2.8630018661366976}}, "branch_attrs": {"mutations": {"nuc": ["C5812T", "G9130T", "C21648T", "G29744A"], "S": ["T29I"]}, "labels": {"aa": "S: T29I"}}}, {"name": "USA/UT-UPHL-210928929150/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.650684931507, "confidence": [2021.650684931507, 2021.650684931507]}, "tsne_x": {"value": 19.46633425346895}, "umap_x": {"value": -0.44233882}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.142244}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.4038819515385404}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.446761566854851}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.11860938095994}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Utah"}, "mds2": {"value": 6.461813575797993}, "mds3": {"value": 29.315817416882904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -2.2213029422187263}}, "branch_attrs": {"mutations": {"nuc": ["G571T", "G8711A", "C8956T", "A10323G", "C20844T", "C27005T", "C27999T"]}}}]}, {"name": "NODE_0000919", "node_attrs": {"div": 36, "num_date": {"value": 2021.4240039888793, "confidence": [2021.2083592022057, 2021.5338724379478]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000260", "node_attrs": {"div": 37, "num_date": {"value": 2021.5092554176476, "confidence": [2021.316219842365, 2021.591100745298]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "USA/MA-CDC-ASC210386884/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.83698630137, "confidence": [2021.83698630137, 2021.83698630137]}, "tsne_x": {"value": 19.292207110654328}, "umap_x": {"value": 2.0893798}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.299658}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.9359616638064}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.989869134255562}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.340017048949047}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 2.004431788059053}, "mds3": {"value": 25.29005689667754}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.271145888290429}}, "branch_attrs": {"mutations": {"nuc": ["C6408T", "C7834T", "G21800T"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}}, {"name": "USA/KY-CDC-ASC210080793/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_x": {"value": 18.81062664995406}, "umap_x": {"value": -0.11658712}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.129164}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.076405962279831}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.629284265614729}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.338575000409744}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kentucky"}, "mds2": {"value": 9.264932200835675}, "mds3": {"value": 24.81461441355884}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.7643295173528}}, "branch_attrs": {"mutations": {"nuc": ["C874T", "C2918T", "C4084T", "C4777T", "A12466G", "C18486T", "C27538T", "G29090T"]}}}]}, {"name": "NODE_0000921", "node_attrs": {"div": 36, "num_date": {"value": 2021.4538341352786, "confidence": [2021.2204500334183, 2021.5355504728316]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000255", "node_attrs": {"div": 37, "num_date": {"value": 2021.5438356164384, "confidence": [2021.4898443808556, 2021.5438356164384]}}, "branch_attrs": {"mutations": {"nuc": ["T27291C"]}}, "children": [{"name": "NZL/21MV0628/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5438356164384, "confidence": [2021.5438356164384, 2021.5438356164384]}, "tsne_x": {"value": 19.461562366474976}, "umap_x": {"value": 2.433044}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.986473}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.634587393843944}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 12.042951927110124}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -22.526476388535844}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.3640438530063012}, "mds3": {"value": 23.85413237329835}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5734116443132309}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000925", "node_attrs": {"div": 37, "num_date": {"value": 2021.5427224312152, "confidence": [2021.475262065523, 2021.5935822115307]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/OH-CDC-ASC210334234/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.727397260274, "confidence": [2021.727397260274, 2021.727397260274]}, "tsne_x": {"value": 18.9776950513512}, "umap_x": {"value": 0.33476186}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.340567}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.927033742246569}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.611899996007244}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -28.58746249929549}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Ohio"}, "mds2": {"value": 8.178888425163203}, "mds3": {"value": 24.96704727111077}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.112934251300301}}, "branch_attrs": {"mutations": {"nuc": ["C2065T", "C6701T", "C8733T", "C11653T", "A15596G", "G18803T", "A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "NODE_0000926", "node_attrs": {"div": 37, "num_date": {"value": 2021.5866161447036, "confidence": [2021.4706156235818, 2021.6640199015937]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NC-CDC-ASC210523649/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.845205479452, "confidence": [2021.845205479452, 2021.845205479452]}, "tsne_x": {"value": 19.29160247461297}, "umap_x": {"value": 0.97485733}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.316324}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.770201062152105}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.686487262602004}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.509256964783216}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "North Carolina"}, "mds2": {"value": 3.6483522119584153}, "mds3": {"value": 27.460254464920368}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.9571030519935615}}, "branch_attrs": {"mutations": {"nuc": ["A2431G", "C8208T", "T11642C", "A26319G"]}}}, {"name": "USA/AZ-CDC-LC0358059/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.823287671233, "confidence": [2021.823287671233, 2021.823287671233]}, "tsne_x": {"value": 19.641276104701703}, "umap_x": {"value": 1.3842229}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.304884}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.96324652703299}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.683404806024695}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.856422524639715}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Arizona"}, "mds2": {"value": 1.649695177666963}, "mds3": {"value": 22.27321919659368}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 28.637329175149542}}, "branch_attrs": {"mutations": {"nuc": ["C3784T", "A10323G", "C12473T", "G17058T", "C21846T", "G25538T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}}]}]}]}, {"name": "NODE_0000928", "node_attrs": {"div": 36, "num_date": {"value": 2021.4789743477806, "confidence": [2021.2193521327576, 2021.5354459108644]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000252", "node_attrs": {"div": 39, "num_date": {"value": 2021.5618085934068, "confidence": [2021.4616089927404, 2021.6192032476304]}}, "branch_attrs": {"mutations": {"nuc": ["A18360G", "C25702T", "G28895T"]}}, "children": [{"name": "USA/AR-UMGC-30846/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.9575342465753, "confidence": [2021.9575342465753, 2021.9575342465753]}, "tsne_x": {"value": 18.85304367407224}, "umap_x": {"value": -0.54698664}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.9248}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.612554692342711}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.3414095239063}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.59361671281987}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Arkansas"}, "mds2": {"value": 3.5731646783628306}, "mds3": {"value": 35.940665678144946}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5538660919862167}}, "branch_attrs": {"mutations": {"nuc": ["G587T", "A1769C", "C5493T", "A14612C", "C15368T", "C20629T"]}}}, {"name": "USA/WV-CDC-LC0209477/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6260273972603, "confidence": [2021.6260273972603, 2021.6260273972603]}, "tsne_x": {"value": 19.005785297590062}, "umap_x": {"value": 0.61630046}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.301}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.170345376086051}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.489956811871728}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.609204698256377}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "West Virginia"}, "mds2": {"value": 3.774146711225506}, "mds3": {"value": 30.313033064293272}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5294005779561206}}, "branch_attrs": {"mutations": {"nuc": ["A11111G", "A12622G", "A24898G"]}}}]}, {"name": "NODE_0000930", "node_attrs": {"div": 36, "num_date": {"value": 2021.4982755113228, "confidence": [2021.220130425309, 2021.5448223724643]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MO-UMGC-11619/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6178082191782, "confidence": [2021.6178082191782, 2021.6178082191782]}, "tsne_x": {"value": 19.44269725357816}, "umap_x": {"value": 1.1720967}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.276232}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.125341411560808}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.777240863568007}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.187723549556207}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Missouri"}, "mds2": {"value": -6.777336990501542}, "mds3": {"value": 28.875261650781443}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.344705503316914}}, "branch_attrs": {"mutations": {"nuc": ["C5544T", "G14712T", "T18471C", "G19292T", "T23548C", "C23893T"]}}}, {"name": "NODE_0000931", "node_attrs": {"div": 36, "num_date": {"value": 2021.5244531880617, "confidence": [2021.2132994891585, 2021.6571437876437]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AR-UMGC-22447/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7767123287672, "confidence": [2021.7767123287672, 2021.7767123287672]}, "tsne_x": {"value": 19.18774221328958}, "umap_x": {"value": 1.3505054}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.354626}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.66832035448824}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.761154257247323}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -19.212182177147334}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Arkansas"}, "mds2": {"value": -4.535426839096584}, "mds3": {"value": 30.37815327101536}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 17.671892133716742}}, "branch_attrs": {"mutations": {"nuc": ["T493C", "C12970T", "T16990C", "A21127G", "G25855T", "C26340T"]}}}, {"name": "NODE_0000934", "node_attrs": {"div": 36, "num_date": {"value": 2021.5617904475098, "confidence": [2021.2113458335898, 2021.6738068807213]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-UMGC-23252/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_x": {"value": 19.374867244495235}, "umap_x": {"value": 1.5130031}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.292814}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.042913337450587}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.832485296336596}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.33651143931465}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Minnesota"}, "mds2": {"value": 2.06411391578483}, "mds3": {"value": 25.27798724261961}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.335179923020547}}, "branch_attrs": {"mutations": {"nuc": ["G3152T", "A7881G", "C24967T", "C26858T", "T28257C"]}}}, {"name": "USA/AZ-CDC-LC0441370/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.9520547945206, "confidence": [2021.9520547945206, 2021.9520547945206]}, "tsne_x": {"value": 18.8373092795924}, "umap_x": {"value": -1.3933564}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.66351}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.351618975859608}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "tsne_y": {"value": 11.358954974476829}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -34.63355543910541}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Arizona"}, "mds2": {"value": 10.704838156558036}, "mds3": {"value": 28.456853033312044}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.312985799388084}}, "branch_attrs": {"mutations": {"nuc": ["A949G", "G3004A", "A9930G", "G14575T", "C15026T", "C18508T", "C19572T", "C21034T", "C25844T", "A27617G", "G28028T", "C28744T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000282", "node_attrs": {"div": 35, "num_date": {"value": 2021.2416925437701, "confidence": [2021.0219200185954, 2021.3591216208786]}}, "branch_attrs": {"mutations": {"nuc": ["C21846T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}, "children": [{"name": "NODE_0000372", "node_attrs": {"div": 36, "num_date": {"value": 2021.32256364742, "confidence": [2021.153367870937, 2021.4369863013699]}}, "branch_attrs": {"mutations": {"nuc": ["A7909G"]}}, "children": [{"name": "NZL/21MV0489/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4369863013699, "confidence": [2021.4369863013699, 2021.4369863013699]}, "tsne_x": {"value": 20.109687831022324}, "umap_x": {"value": 2.5871232}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.092596}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.606551903603471}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 12.990851439780538}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.672461073205817}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.9248607731235376}, "mds3": {"value": 23.355233548710142}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.563213392221919}}, "branch_attrs": {"mutations": {"nuc": ["G27390T"]}}}, {"name": "NZL/21MV0515/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4616438356165, "confidence": [2021.4616438356165, 2021.4616438356165]}, "tsne_x": {"value": 20.32793395568288}, "umap_x": {"value": 2.0122056}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.134605}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.186765031961423}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.696182281300596}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.41017349849319}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.661812441364198}, "mds3": {"value": 22.31837076569169}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.452064974827909}}, "branch_attrs": {"mutations": {"nuc": ["C4940T", "C5407T", "G11083T", "T17736C", "C17977T"]}}}]}, {"name": "NODE_0000376", "node_attrs": {"div": 36, "num_date": {"value": 2021.2829680358468, "confidence": [2021.0741506403715, 2021.4736719014204]}}, "branch_attrs": {"mutations": {"nuc": ["C28708T"]}}, "children": [{"name": "IND/19/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.9767123287672, "confidence": [2021.9767123287672, 2021.9767123287672]}, "tsne_x": {"value": 18.71560039977016}, "umap_x": {"value": -1.4360012}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.658476}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.011380280444626}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.19677337295985}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.03068717679453}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "India"}, "mds2": {"value": -17.27755877265967}, "mds3": {"value": 36.431101306940654}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 6.168655793405818}}, "branch_attrs": {"mutations": {"nuc": ["A1395C", "C3218A", "T3655G", "C3990T", "G12514T", "C12676T", "C13965T", "G15093A", "G16236A", "G19656T", "-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "A24913G", "C25096T", "C26151T", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253A", "-28271A"], "S": ["X156E", "-157F", "X158R", "X1274*"]}, "labels": {"aa": "S: X156E, -157F, X158R, X1274*"}}}, {"name": "USA/CO-CDPHE-21466065/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5493150684931, "confidence": [2021.5493150684931, 2021.5493150684931]}, "tsne_x": {"value": 19.138736366299334}, "umap_x": {"value": 0.754039}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.242172}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 45.20528739807519}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.117"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.652553907939442}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -31.12163504231188}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "USA"}, "mds2": {"value": 1.532872966232094}, "mds3": {"value": 21.91863657413757}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.496959539593279}}, "branch_attrs": {"mutations": {"nuc": ["C106T", "G2202T", "A3523C", "G6419A", "G14186T", "C15810T", "G27632C", "G29773T"]}}}]}, {"name": "NODE_0000368", "node_attrs": {"div": 36, "num_date": {"value": 2021.321783050647, "confidence": [2021.0518125489352, 2021.5269252503485]}}, "branch_attrs": {"mutations": {"nuc": ["A10691G"]}}, "children": [{"name": "KEN/SS3864/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.795890410959, "confidence": [2021.795890410959, 2021.795890410959]}, "tsne_x": {"value": 18.944397440187107}, "umap_x": {"value": -0.26351202}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.21577}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.5393443618333913}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 15.180213503365293}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.81647858294806}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kenya"}, "mds2": {"value": 1.5196675506951671}, "mds3": {"value": 17.99910657886026}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.69304789417289}}, "branch_attrs": {"mutations": {"nuc": ["G204A", "C2062T", "C12084T", "C14184T", "A20541G", "T24331C", "G25049T", "G26918T", "T27752C", "C29670T", "C29743T"], "S": ["D1163Y"]}, "labels": {"aa": "S: D1163Y"}}}, {"name": "NODE_0000369", "node_attrs": {"div": 37, "num_date": {"value": 2021.416586586127, "confidence": [2021.1445761054565, 2021.5739726027398]}}, "branch_attrs": {"mutations": {"nuc": ["G28378T"]}}, "children": [{"name": "KEN/SS2065/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5739726027398, "confidence": [2021.5739726027398, 2021.5739726027398]}, "tsne_x": {"value": 19.74166270181451}, "umap_x": {"value": 2.434736}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.137218}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 56.91054263136512}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.630062488110234}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": -18.76304550126173}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Kenya"}, "mds2": {"value": -2.109525712338398}, "mds3": {"value": 25.10619135962853}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 10.722618000874371}}, "branch_attrs": {"mutations": {"nuc": ["C6395T", "T26445C", "C27450T"]}}}, {"name": "USA/CA-CDC-FG-175622/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.8808219178081, "confidence": [2021.8808219178081, 2021.8808219178081]}, "tsne_x": {"value": 23.02781783556008}, "umap_x": {"value": -1.469876}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.639093}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.5049263750617112}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.116.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.81542838993398}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -37.68749312053604}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "California"}, "mds2": {"value": -5.563566502979326}, "mds3": {"value": 27.85970133004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.232790625724481}}, "branch_attrs": {"mutations": {"nuc": ["C4084T", "C4155T", "G12071A", "C14937T", "C19160T", "T19929C", "C19983T", "G20968A", "C21234A", "C21597T", "G21793A", "C27131T"], "S": ["S12F"]}, "labels": {"aa": "S: S12F"}}}]}]}, {"name": "NODE_0000940", "node_attrs": {"div": 35, "num_date": {"value": 2021.2548050088992, "confidence": [2021.022937996195, 2021.3680396510442]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000943", "node_attrs": {"div": 35, "num_date": {"value": 2021.2651923042201, "confidence": [2021.024813798924, 2021.3789275111442]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000351", "node_attrs": {"div": 40, "num_date": {"value": 2021.422229259294, "confidence": [2021.206385891121, 2021.5308271990218]}}, "branch_attrs": {"mutations": {"nuc": ["T15628C", "G18079T", "A20532G", "G24872T", "C29738T"], "S": ["V1104L"]}, "labels": {"aa": "S: V1104L"}}, "children": [{"name": "NODE_0000355", "node_attrs": {"div": 42, "num_date": {"value": 2021.4948500985315, "confidence": [2021.3265553477036, 2021.5874716948479]}}, "branch_attrs": {"mutations": {"nuc": ["G23012C", "A25934G"], "S": ["E484Q"]}, "labels": {"aa": "S: E484Q"}}, "children": [{"name": "NGA/CV2546/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6068493150685, "confidence": [2021.6068493150685, 2021.6068493150685]}, "tsne_x": {"value": 18.613028842034936}, "umap_x": {"value": 0.982982}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.454075}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.016244649269657}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.63944371033073}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.52207570793417}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 6.212996203040816}, "mds3": {"value": 27.909353695000608}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -0.0446388085858515}}, "branch_attrs": {"mutations": {"nuc": ["T21846C", "A21987G", "C28896T"], "S": ["I95T", "D142G"]}, "labels": {"aa": "S: I95T, D142G"}}}, {"name": "NGA/CV3852/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.7191780821918, "confidence": [2021.7191780821918, 2021.7191780821918]}, "tsne_x": {"value": 18.68815192551799}, "umap_x": {"value": -1.4678891}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.630104}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.184530816290964}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.810762924033916}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.94580873598555}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": -10.970623903051852}, "mds3": {"value": 38.23882918618729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -10.599073649142634}}, "branch_attrs": {"mutations": {"nuc": ["C1973T", "C2263A", "G12031T", "C15763T", "G20433T", "G23587C", "C29721T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}]}, {"name": "NODE_0000947", "node_attrs": {"div": 40, "num_date": {"value": 2021.4314793821761, "confidence": [2021.2120220739896, 2021.5398378053299]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000352", "node_attrs": {"div": 41, "num_date": {"value": 2021.4956528270848, "confidence": [2021.3389870782164, 2021.5557159811412]}}, "branch_attrs": {"mutations": {"nuc": ["C21077T"]}}, "children": [{"name": "NGA/CV3334/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_x": {"value": 18.67091140716623}, "umap_x": {"value": 0.046613704}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.175026}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.111001510749105}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.667218644989415}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.82242942572701}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 2.2072987786698968}, "mds3": {"value": 28.928724949763545}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.615324908389337}}, "branch_attrs": {"mutations": {"nuc": ["C1170T", "G9251A", "C22591T"]}}}, {"name": "NGA/CV2533/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5958904109589, "confidence": [2021.5958904109589, 2021.5958904109589]}, "tsne_x": {"value": 18.646597401672327}, "umap_x": {"value": -0.44806394}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.045818}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.818970267308588}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.705175428194377}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -34.75334147648544}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 3.26980758579064}, "mds3": {"value": 21.85912539675851}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -10.32056877295676}}, "branch_attrs": {"mutations": {"nuc": ["T224C", "A4759G", "A15471G", "C19862T", "G21941T"], "S": ["V127F"]}, "labels": {"aa": "S: V127F"}}}]}, {"name": "NODE_0000949", "node_attrs": {"div": 40, "num_date": {"value": 2021.4578809921463, "confidence": [2021.2125433997542, 2021.5451700098997]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV3392/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.7109589041097, "confidence": [2021.7109589041097, 2021.7109589041097]}, "tsne_x": {"value": 18.616746298600304}, "umap_x": {"value": -0.6934165}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.996918}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.44694484727748}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.718851830420007}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.36223513347679}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 4.445725687015618}, "mds3": {"value": 22.93107556735493}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.347057637573721}}, "branch_attrs": {"mutations": {"nuc": ["T5014C", "G13201A", "A21987G", "C26912T", "A29408C", "A29412T", "G29414T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "NODE_0000356", "node_attrs": {"div": 41, "num_date": {"value": 2021.516284355571, "confidence": [2021.3275468751783, 2021.620883229452]}}, "branch_attrs": {"mutations": {"nuc": ["C26060T"]}}, "children": [{"name": "NODE_0000954", "node_attrs": {"div": 41, "num_date": {"value": 2021.56156830605, "confidence": [2021.3271160993231, 2021.6334951710985]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV202527", "node_attrs": {"div": 46, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_x": {"value": 18.65959282234498}, "umap_x": {"value": -0.9346316}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.007874}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.475427772322044}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.737165800103778}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.946518344496724}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Niedersachsen"}, "mds2": {"value": 1.608923275992108}, "mds3": {"value": 24.82203559120752}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.795349027369671}}, "branch_attrs": {"mutations": {"nuc": ["C2395T", "C3096T", "G10384C", "G25494T", "C28290T"]}}}, {"name": "NODE_0000358", "node_attrs": {"div": 43, "num_date": {"value": 2021.6477749906146, "confidence": [2021.5343549770687, 2021.6930920344494]}}, "branch_attrs": {"mutations": {"nuc": ["G3243A", "C26885T"]}}, "children": [{"name": "NGA/CV4259/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7027397260274, "confidence": [2021.7027397260274, 2021.7027397260274]}, "tsne_x": {"value": 18.64498124447252}, "umap_x": {"value": 0.6842938}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.31345}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 68.16097906626271}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.71136024195026}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -25.3729613177891}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 7.558526585621199}, "mds3": {"value": 27.69746610630418}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -0.7590738836330989}}, "branch_attrs": {"mutations": {"nuc": ["C13694T", "T20799C"]}}}, {"name": "NGA/CV4787/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.823287671233, "confidence": [2021.823287671233, 2021.823287671233]}, "tsne_x": {"value": 18.65285981809959}, "umap_x": {"value": -1.0130751}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.881365}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.5813026329479545}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.75376952536328}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -36.00225217611396}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 2.4311880231497898}, "mds3": {"value": 25.22189327245268}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.557350851244674}}, "branch_attrs": {"mutations": {"nuc": ["T3913C", "G22343A", "T23071C", "A27551-", "A27552-", "T27553-", "T27554-"], "S": ["G261S"]}, "labels": {"aa": "S: G261S"}}}]}]}, {"name": "NODE_0000359", "node_attrs": {"div": 42, "num_date": {"value": 2021.5605600956676, "confidence": [2021.4319001793847, 2021.6324625326172]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NGA/CV3425/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_x": {"value": 18.633015686607383}, "umap_x": {"value": 0.10951609}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.266132}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.474189352910269}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.654069648278444}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.91676003822665}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 1.6283074553486216}, "mds3": {"value": 19.73555798086804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.69062476670582}}, "branch_attrs": {"mutations": {"nuc": ["A1198G", "C9803T", "T21992-", "A21993-", "T21994-", "C26110T", "G29628T", "T29738C"], "S": ["Y144-"]}, "labels": {"aa": "S: Y144-"}}}, {"name": "NODE_0000958", "node_attrs": {"div": 42, "num_date": {"value": 2021.5901988710111, "confidence": [2021.4400821353424, 2021.6385299838196]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV3029/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_x": {"value": 18.64587033818186}, "umap_x": {"value": 1.0686624}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.358686}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 42.19840477559693}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.645348324765976}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -28.73251231676106}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 2.4246286067499963}, "mds3": {"value": 22.78132330772667}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.772294064942759}}, "branch_attrs": {"mutations": {"nuc": ["G872T"]}}}, {"name": "NGA/CV3054/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_x": {"value": 18.62077657275182}, "umap_x": {"value": 1.2206948}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.355421}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 45.17478628293936}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "tsne_y": {"value": 16.682491271225548}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -30.409665441414965}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nigeria"}, "mds2": {"value": 2.2926610002293004}, "mds3": {"value": 19.1117355324606}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 8.43787905661481}}, "branch_attrs": {"mutations": {"nuc": ["G5008T", "C10279T", "A24410G"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}]}]}]}]}]}]}, {"name": "NODE_0000283", "node_attrs": {"div": 36, "num_date": {"value": 2021.321134782936, "confidence": [2021.192708792997, 2021.3811788782734]}}, "branch_attrs": {"mutations": {"nuc": ["C7851T"]}}, "children": [{"name": "OU408432", "node_attrs": {"div": 40, "num_date": {"value": 2021.4945205479453, "confidence": [2021.4945205479453, 2021.4945205479453]}, "tsne_x": {"value": 20.930150160972847}, "umap_x": {"value": 1.4666888}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.979542}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.599603642409657}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.91725490659804}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.84802732319999}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.709161811990441}, "mds3": {"value": 23.24320959696321}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5636440281085381}}, "branch_attrs": {"mutations": {"nuc": ["C21161T", "G25500T", "T27484C", "A27489C"]}}}, {"name": "NODE_0000314", "node_attrs": {"div": 37, "num_date": {"value": 2021.41230410255, "confidence": [2021.2441909530955, 2021.5886483852935]}}, "branch_attrs": {"mutations": {"nuc": ["C835T"]}}, "children": [{"name": "Denmark/DCGC-220607/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_x": {"value": 22.10244924252888}, "umap_x": {"value": -1.1452003}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.784357}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.916458102476374}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 11.753937410746316}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.11935822964489}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Nordjylland"}, "mds2": {"value": -8.00044931046062}, "mds3": {"value": 39.294318218861456}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -11.917817679219487}}, "branch_attrs": {"mutations": {"nuc": ["G2755T", "C4423T", "T8701A", "C10369T", "C16616T", "G22346T", "C23638T", "A25817G", "C29272T", "A29355G", "C29696T"], "S": ["A262S"]}, "labels": {"aa": "S: A262S"}}}, {"name": "OU984152", "node_attrs": {"div": 44, "num_date": {"value": 2021.8068493150686, "confidence": [2021.8068493150686, 2021.8068493150686]}, "tsne_x": {"value": 21.812798057502512}, "umap_x": {"value": -0.34454173}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.323763}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.86149818006741}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.456157975735094}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -34.26661539309812}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -0.2868109170585061}, "mds3": {"value": 21.60995978459185}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.52974731869033}}, "branch_attrs": {"mutations": {"nuc": ["C8982T", "C13818T", "T15521A", "T15573C", "G25019T", "G28048T", "G29825A"], "S": ["D1153Y"]}, "labels": {"aa": "S: D1153Y"}}}]}, {"name": "NODE_0000293", "node_attrs": {"div": 37, "num_date": {"value": 2021.414857782303, "confidence": [2021.306962196793, 2021.4945205479453]}}, "branch_attrs": {"mutations": {"nuc": ["A1741G"]}}, "children": [{"name": "OU406964", "node_attrs": {"div": 39, "num_date": {"value": 2021.4945205479453, "confidence": [2021.4945205479453, 2021.4945205479453]}, "tsne_x": {"value": 20.73840064003296}, "umap_x": {"value": 1.8344631}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.92616}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.606793233215285}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.841289324283844}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.20330931261238}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.194822778858966}, "mds3": {"value": 23.457113384753345}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.560558915658439}}, "branch_attrs": {"mutations": {"nuc": ["C449T", "A11595G"]}}}, {"name": "OU719824", "node_attrs": {"div": 40, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_x": {"value": 20.88998446558872}, "umap_x": {"value": 1.736488}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.92957}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.917560746186134}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.062629592791245}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.94761078791584}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": -2.837474465062846}, "mds3": {"value": 22.348793660667305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.6945357278978042}}, "branch_attrs": {"mutations": {"nuc": ["C17541T", "G24985T", "T25435C"], "S": ["L1141F"]}, "labels": {"aa": "S: L1141F"}}}]}, {"name": "NODE_0000807", "node_attrs": {"div": 36, "num_date": {"value": 2021.3293528216186, "confidence": [2021.194281049196, 2021.4184060079906]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX570280", "node_attrs": {"div": 38, "num_date": {"value": 2021.4369863013699, "confidence": [2021.4369863013699, 2021.4369863013699]}, "tsne_x": {"value": 20.518264885107083}, "umap_x": {"value": 2.6044714}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.158432}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.985209039169443}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.772886836873743}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.53489502309221}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.669187011063232}, "mds3": {"value": 21.93453803461752}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -14.199223806116189}}, "branch_attrs": {"mutations": {"nuc": ["G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "A19323G", "T25666C"]}}}, {"name": "NODE_0000819", "node_attrs": {"div": 36, "num_date": {"value": 2021.3553964675286, "confidence": [2021.1924200753372, 2021.4596242778491]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000308", "node_attrs": {"div": 37, "num_date": {"value": 2021.4172343549762, "confidence": [2021.2568815980999, 2021.5118390010189]}}, "branch_attrs": {"mutations": {"nuc": ["G677A"]}}, "children": [{"name": "OU593694", "node_attrs": {"div": 43, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_x": {"value": 21.34190648484728}, "umap_x": {"value": 0.6913898}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.199457}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.496617307612853}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.13804974989436}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.115079927525795}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -3.38480143668934}, "mds3": {"value": 23.927462483131187}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -12.959121644806013}}, "branch_attrs": {"mutations": {"nuc": ["G14829T", "G17193T", "G19730A", "C28291T", "C29774T", "C29870A"]}}}, {"name": "OV473519", "node_attrs": {"div": 47, "num_date": {"value": 2021.9301369863015, "confidence": [2021.9301369863015, 2021.9301369863015]}, "tsne_x": {"value": 22.412560408870927}, "umap_x": {"value": -1.2033426}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.80995}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.860286279604946}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.87664893359668}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.32743594093617}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -7.584492954440922}, "mds3": {"value": 26.784531624877605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5920474317356623}}, "branch_attrs": {"mutations": {"nuc": ["A6391C", "T15843C", "C16887T", "T17040C", "A18702C", "G23222C", "T25345A", "A25668C", "G26951T", "C27536T"], "S": ["E554Q"]}, "labels": {"aa": "S: E554Q"}}}]}, {"name": "NODE_0000826", "node_attrs": {"div": 36, "num_date": {"value": 2021.377252547981, "confidence": [2021.191302265156, 2021.462583092879]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU362682", "node_attrs": {"div": 39, "num_date": {"value": 2021.4698630136986, "confidence": [2021.4698630136986, 2021.4698630136986]}, "tsne_x": {"value": 20.46607547202256}, "umap_x": {"value": 2.3715672}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.936409}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.0417051354537}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.594815100758352}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.363402748782065}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.028064017120924}, "mds3": {"value": 22.12816166413895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.328271486985456}}, "branch_attrs": {"mutations": {"nuc": ["T1871C", "C2113T", "G28376A"]}}}, {"name": "NODE_0000835", "node_attrs": {"div": 36, "num_date": {"value": 2021.4121802058469, "confidence": [2021.1875419888888, 2021.4624683133488]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-126673/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_x": {"value": 21.23043436622783}, "umap_x": {"value": 1.2860283}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.232008}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.048365897062285}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.175245866499427}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -28.35688325693957}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Midtjylland"}, "mds2": {"value": -3.3756178618140624}, "mds3": {"value": 21.99183457898487}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 17.773389046227457}}, "branch_attrs": {"mutations": {"nuc": ["C912T", "A6355T", "A17674G", "C19596T", "G23666A", "C27247T"], "S": ["E702K"]}, "labels": {"aa": "S: E702K"}}}, {"name": "NODE_0000311", "node_attrs": {"div": 37, "num_date": {"value": 2021.5107628426128, "confidence": [2021.197659497582, 2021.5897035462697]}}, "branch_attrs": {"mutations": {"nuc": ["C5672T"]}}, "children": [{"name": "USA/VT-CDCBI-CRSP_FDZXZ2GT3IYATQHM/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.7904109589042, "confidence": [2021.7904109589042, 2021.7904109589042]}, "tsne_x": {"value": 20.896699228303447}, "umap_x": {"value": 1.6823506}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.030287}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.064858637925287}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.768270253555045}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.92046285684832}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Vermont"}, "mds2": {"value": -2.047355395109812}, "mds3": {"value": 24.46998560879444}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -16.379314049898085}}, "branch_attrs": {"mutations": {"nuc": ["C4158T", "C6361T", "A27095T"]}}}, {"name": "OU843775", "node_attrs": {"div": 45, "num_date": {"value": 2021.7575342465752, "confidence": [2021.7575342465752, 2021.7575342465752]}, "tsne_x": {"value": 22.196925052368588}, "umap_x": {"value": -0.6316012}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.248957}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.601711048565341}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.171971468467424}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.10914041172816}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -4.149694737877625}, "mds3": {"value": 23.44121198810006}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5999842546230055}}, "branch_attrs": {"mutations": {"nuc": ["G2155T", "G20208A", "C21178T", "A23368T", "C23655T", "G28300T", "G28690T", "G29254T"], "S": ["S698L"]}, "labels": {"aa": "S: S698L"}}}]}]}]}]}]}, {"name": "NODE_0000965", "node_attrs": {"div": 36, "num_date": {"value": 2021.330027428511, "confidence": [2021.1945204720848, 2021.4150684931508]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU797277", "node_attrs": {"div": 38, "num_date": {"value": 2021.4150684931508, "confidence": [2021.4150684931508, 2021.4150684931508]}, "tsne_x": {"value": 20.64409456126708}, "umap_x": {"value": 2.5470393}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.972689}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 35.93725314168321}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.86337217568888}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -23.54588338795313}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -3.709790209600629}, "mds3": {"value": 21.18850780262805}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.8108110529889184}}, "branch_attrs": {"mutations": {"nuc": ["C1427A", "T15591C"]}}}, {"name": "NODE_0000966", "node_attrs": {"div": 36, "num_date": {"value": 2021.3537992007539, "confidence": [2021.1533792473072, 2021.4699980111461]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000303", "node_attrs": {"div": 37, "num_date": {"value": 2021.417255778906, "confidence": [2021.236481023725, 2021.5522674953654]}}, "branch_attrs": {"mutations": {"nuc": ["A5991C"]}}, "children": [{"name": "OU754292", "node_attrs": {"div": 41, "num_date": {"value": 2021.7109589041097, "confidence": [2021.7109589041097, 2021.7109589041097]}, "tsne_x": {"value": 20.6791109738528}, "umap_x": {"value": 1.6947236}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.004116}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29933545455673}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.298826284000953}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -27.065864173107844}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -0.8230636763224484}, "mds3": {"value": 22.26959902252784}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.359079698867862}}, "branch_attrs": {"mutations": {"nuc": ["A427G", "G4649T", "G7360T", "T11638C"]}}}, {"name": "NODE_0000304", "node_attrs": {"div": 38, "num_date": {"value": 2021.4958616033157, "confidence": [2021.3483760784075, 2021.5592261007077]}}, "branch_attrs": {"mutations": {"nuc": ["C21516T"]}}, "children": [{"name": "OU483272", "node_attrs": {"div": 41, "num_date": {"value": 2021.5630136986301, "confidence": [2021.5630136986301, 2021.5630136986301]}, "tsne_x": {"value": 20.67867858326709}, "umap_x": {"value": 1.7122687}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.983322}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.879370324526584}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.26159164210815}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.79079729178408}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": 0.6635399133041886}, "mds3": {"value": 22.84453706173166}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 3.301018816554882}}, "branch_attrs": {"mutations": {"nuc": ["G3896T", "A4050C", "T8707C"]}}}, {"name": "OU626298", "node_attrs": {"div": 41, "num_date": {"value": 2021.6397260273973, "confidence": [2021.6397260273973, 2021.6397260273973]}, "tsne_x": {"value": 20.82546505590672}, "umap_x": {"value": 1.1480467}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.020893}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.458928915644327}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.426896937379007}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.34433209649366}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": -1.9405514993330504}, "mds3": {"value": 23.28549460106932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5737866078728289}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "A6424C", "A19387C"]}}}]}]}, {"name": "NODE_0000969", "node_attrs": {"div": 36, "num_date": {"value": 2021.389864147125, "confidence": [2021.1510808008827, 2021.481648397344]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000971", "node_attrs": {"div": 36, "num_date": {"value": 2021.4118777710253, "confidence": [2021.150431026319, 2021.5348330193417]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU710059", "node_attrs": {"div": 45, "num_date": {"value": 2021.686301369863, "confidence": [2021.686301369863, 2021.686301369863]}, "tsne_x": {"value": 21.183951734967486}, "umap_x": {"value": -0.19004367}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.298168}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.088229557243701}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 11.70449743491408}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.798001340178736}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": 2.0572000359990867}, "mds3": {"value": 22.714760430409115}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.314856127102855}}, "branch_attrs": {"mutations": {"nuc": ["C478T", "A4576T", "T4579A", "G11727A", "C12880T", "T21679C", "G22471T", "T25938C", "G27014T"], "S": ["L303F"]}, "labels": {"aa": "S: L303F"}}}, {"name": "NODE_0000973", "node_attrs": {"div": 36, "num_date": {"value": 2021.4203188020888, "confidence": [2021.1512726314093, 2021.5424039695406]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000299", "node_attrs": {"div": 38, "num_date": {"value": 2021.4943657519595, "confidence": [2021.2176319160308, 2021.5840246929843]}}, "branch_attrs": {"mutations": {"nuc": ["C23481T", "G29440T"], "S": ["S640F"]}, "labels": {"aa": "S: S640F"}}, "children": [{"name": "OV056585", "node_attrs": {"div": 46, "num_date": {"value": 2021.8397260273973, "confidence": [2021.8397260273973, 2021.8397260273973]}, "tsne_x": {"value": 22.29516448242698}, "umap_x": {"value": -0.90660095}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.994719}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.8509897621834766}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 14.704801871722449}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -35.16037387209138}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.8551000989495328}, "mds3": {"value": 26.02412795813823}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.6059802117437016}}, "branch_attrs": {"mutations": {"nuc": ["C11572T", "T14646G", "G16957T", "C20719T", "G21372T", "C24802T", "C26645T", "C29580T"]}}}, {"name": "OU770429", "node_attrs": {"div": 48, "num_date": {"value": 2021.727397260274, "confidence": [2021.727397260274, 2021.727397260274]}, "tsne_x": {"value": 22.76946732767703}, "umap_x": {"value": -1.4808526}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.6287}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.604358889117562}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.160260981497098}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -37.73264191467937}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -6.295345490535428}, "mds3": {"value": 25.980773875090065}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5726011986086246}}, "branch_attrs": {"mutations": {"nuc": ["A594G", "T4057C", "C4582T", "C4832T", "A6790G", "T13096C", "G18292T", "C24023T", "C25587A", "C28093T"]}}}]}, {"name": "NODE_0000306", "node_attrs": {"div": 38, "num_date": {"value": 2021.513624028447, "confidence": [2021.3478941204942, 2021.5688788450689]}}, "branch_attrs": {"mutations": {"nuc": ["C14724T", "C25046T"], "S": ["P1162S"]}, "labels": {"aa": "S: P1162S"}}, "children": [{"name": "OU532068", "node_attrs": {"div": 40, "num_date": {"value": 2021.5767123287671, "confidence": [2021.5767123287671, 2021.5767123287671]}, "tsne_x": {"value": 20.911512673737995}, "umap_x": {"value": 2.2496092}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.900614}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.3933946054777726}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.736828578775008}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.030791573556154}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -4.135864474001579}, "mds3": {"value": 21.444390674303765}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 18.639012127152807}}, "branch_attrs": {"mutations": {"nuc": ["G8184A", "C28132T"]}}}, {"name": "OU854270", "node_attrs": {"div": 43, "num_date": {"value": 2021.7602739726028, "confidence": [2021.7602739726028, 2021.7602739726028]}, "tsne_x": {"value": 21.549612818272333}, "umap_x": {"value": -0.2633565}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.368774}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.602343347300623}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.110023942167553}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.354604894373466}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.9582710569675443}, "mds3": {"value": 23.212304707040907}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5615620181670237}}, "branch_attrs": {"mutations": {"nuc": ["C1060T", "T16456C", "C23059T", "A24646G", "T28226C"]}}}]}]}]}, {"name": "NODE_0000977", "node_attrs": {"div": 36, "num_date": {"value": 2021.4139599623704, "confidence": [2021.3760964909152, 2021.4853188393934]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU414514", "node_attrs": {"div": 38, "num_date": {"value": 2021.5, "confidence": [2021.5, 2021.5]}, "tsne_x": {"value": 20.584938496972693}, "umap_x": {"value": 2.4315717}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.935411}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.820137823827631}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.772766548462652}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.09218201611728}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.098221274416832}, "mds3": {"value": 22.278022159554386}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 3.888921018791749}}, "branch_attrs": {"mutations": {"nuc": ["C13452T", "C18395T"]}}}, {"name": "NODE_0000980", "node_attrs": {"div": 36, "num_date": {"value": 2021.4496394008818, "confidence": [2021.3547459478696, 2021.488589140875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU543024", "node_attrs": {"div": 38, "num_date": {"value": 2021.5958904109589, "confidence": [2021.5958904109589, 2021.5958904109589]}, "tsne_x": {"value": 20.665772470446303}, "umap_x": {"value": 2.2803137}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.905952}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.605628710502167}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.804084981585794}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.075689292667835}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": -1.9933905291473324}, "mds3": {"value": 23.05772345727953}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5620044353027503}}, "branch_attrs": {"mutations": {"nuc": ["C19983T", "C24919T"]}}}, {"name": "NODE_0000981", "node_attrs": {"div": 36, "num_date": {"value": 2021.458491312449, "confidence": [2021.360678354943, 2021.488831721288]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000982", "node_attrs": {"div": 36, "num_date": {"value": 2021.487136446853, "confidence": [2021.3609138982115, 2021.4945205479453]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU457836", "node_attrs": {"div": 40, "num_date": {"value": 2021.5465753424658, "confidence": [2021.5465753424658, 2021.5465753424658]}, "tsne_x": {"value": 20.902227629026346}, "umap_x": {"value": 1.507601}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.981956}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.60558031875994}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.853541559857003}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.87699711254565}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -3.0806957610683288}, "mds3": {"value": 23.15757639197786}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5654143521910454}}, "branch_attrs": {"mutations": {"nuc": ["C21440T", "C23530T", "C27005T", "C27847T"]}}}, {"name": "NZL/21MV0560/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4945205479453, "confidence": [2021.4945205479453, 2021.4945205479453]}, "tsne_x": {"value": 20.223820044758742}, "umap_x": {"value": 2.6951015}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.07551}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.29449866603968}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.754968530414653}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -19.557629978704256}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.106361063399988}, "mds3": {"value": 21.562349016331808}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 5.357216985227175}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000984", "node_attrs": {"div": 36, "num_date": {"value": 2021.4941457872344, "confidence": [2021.3445055474492, 2021.5292337280716]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU463777", "node_attrs": {"div": 37, "num_date": {"value": 2021.5438356164384, "confidence": [2021.5438356164384, 2021.5438356164384]}, "tsne_x": {"value": 20.579966318021487}, "umap_x": {"value": 2.4173653}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.924757}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.607928625308391}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.802414111030467}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.009911263669785}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.8498239035603257}, "mds3": {"value": 22.74407981316992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5622675758155861}}, "branch_attrs": {"mutations": {"nuc": ["C28706T"]}}}, {"name": "NODE_0000988", "node_attrs": {"div": 36, "num_date": {"value": 2021.5075650643134, "confidence": [2021.34608572738, 2021.5878717400833]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU881733", "node_attrs": {"div": 44, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_x": {"value": 21.837278998582057}, "umap_x": {"value": -0.4435174}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.31264}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.606039748310508}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.232482270574828}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.713286686947846}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -5.72375139613231}, "mds3": {"value": 24.569861119881285}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5631528578955719}}, "branch_attrs": {"mutations": {"nuc": ["C6582T", "T12454C", "C13326T", "C14670T", "G14866C", "C17894T", "C26907T", "T27346C"]}}}, {"name": "NODE_0000989", "node_attrs": {"div": 36, "num_date": {"value": 2021.5182286155632, "confidence": [2021.348567017284, 2021.6039968876476]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU881909", "node_attrs": {"div": 45, "num_date": {"value": 2021.7739726027398, "confidence": [2021.7739726027398, 2021.7739726027398]}, "tsne_x": {"value": 22.297780525394185}, "umap_x": {"value": -0.48594305}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.271542}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.939677681198054}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.46918200579914}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.22130994583212}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -6.7950203067077855}, "mds3": {"value": 23.35697828064181}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.721032734527838}}, "branch_attrs": {"mutations": {"nuc": ["C657T", "G1042T", "C3987T", "G15629T", "C16887T", "A23450T", "G25218T", "G25720T", "A29359T"], "S": ["T630S", "G1219V"]}, "labels": {"aa": "S: T630S, G1219V"}}}, {"name": "NODE_0000990", "node_attrs": {"div": 36, "num_date": {"value": 2021.5532779838882, "confidence": [2021.3485722204166, 2021.6570572818794]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-CDC-FG-189017/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9301369863015, "confidence": [2021.9301369863015, 2021.9301369863015]}, "tsne_x": {"value": 21.195426550083155}, "umap_x": {"value": -0.5983652}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.946125}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.254242473371882}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 11.724542723777343}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.352007987593304}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Michigan"}, "mds2": {"value": -5.9082024061877325}, "mds3": {"value": 34.28430552323383}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.458457144479082}}, "branch_attrs": {"mutations": {"nuc": ["C664T", "C3695T", "C5907T", "A6063G", "T11573G", "C14322T", "A21875G", "G21974C", "A23598-", "T23599-", "T23600-", "C28603T", "C29580T"], "S": ["I105V", "D138H", "N679X", "S680X"]}, "labels": {"aa": "S: I105V, D138H, N679X, S680X"}}}, {"name": "NODE_0000991", "node_attrs": {"div": 36, "num_date": {"value": 2021.5879681967824, "confidence": [2021.3453473034924, 2021.6654975148895]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV579857", "node_attrs": {"div": 41, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_x": {"value": 21.33763708751893}, "umap_x": {"value": 0.66498286}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.115059}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 25.107039396376475}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 13.04004168964399}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -30.16710681563522}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -4.925525438789919}, "mds3": {"value": 23.230224449430143}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.654910220642064}}, "branch_attrs": {"mutations": {"nuc": ["G278A", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "C5746T", "C12400T", "G14371T", "C22338T"], "S": ["T259I"]}, "labels": {"aa": "S: T259I"}}}, {"name": "NODE_0000993", "node_attrs": {"div": 36, "num_date": {"value": 2021.5956108256112, "confidence": [2021.3482379447253, 2021.6811726305632]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV292414", "node_attrs": {"div": 45, "num_date": {"value": 2021.9082191780822, "confidence": [2021.9082191780822, 2021.9082191780822]}, "tsne_x": {"value": 22.07105127911478}, "umap_x": {"value": -0.63052994}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.252375}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.888885582072754}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 14.306712997671127}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.430911540909115}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -4.991825359092089}, "mds3": {"value": 25.785274837689904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.6052612989215622}}, "branch_attrs": {"mutations": {"nuc": ["C9073T", "C9521T", "C10408T", "T18083C", "G22081T", "C25549T", "G27604A", "T27863C", "C29722T"], "S": ["Q173H"]}, "labels": {"aa": "S: Q173H"}}}, {"name": "OV550656", "node_attrs": {"div": 50, "num_date": {"value": 2021.9465753424658, "confidence": [2021.9465753424658, 2021.9465753424658]}, "tsne_x": {"value": 21.91269060717844}, "umap_x": {"value": -1.5087838}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.613285}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.655836413103222}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4.10"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 11.68670664264218}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -41.23446600902064}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": 3.307394058944749}, "mds3": {"value": 22.020221311969493}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 6.298118203478369}}, "branch_attrs": {"mutations": {"nuc": ["A3344-", "G3345-", "T3346-", "T3347-", "T3348-", "T3349-", "C4320T", "C5512T", "T8604C", "C9907T", "C10714T", "C12513T", "A16602G", "G20663A", "G22487C", "C23996T", "G25757T", "T27900C", "C28849T", "C29171T"], "S": ["E309Q", "P812S"]}, "labels": {"aa": "S: E309Q, P812S"}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000996", "node_attrs": {"div": 36, "num_date": {"value": 2021.330100087742, "confidence": [2021.194180975217, 2021.3876712328768]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU288353", "node_attrs": {"div": 37, "num_date": {"value": 2021.3876712328768, "confidence": [2021.3876712328768, 2021.3876712328768]}, "tsne_x": {"value": 20.58888630072823}, "umap_x": {"value": 2.3970115}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.913536}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.60647548895242}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.805304224340508}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.104590506184586}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.907448680933038}, "mds3": {"value": 22.681928510500025}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.562173971863007}}, "branch_attrs": {"mutations": {"nuc": ["C18511T"]}}}, {"name": "NODE_0000316", "node_attrs": {"div": 37, "num_date": {"value": 2021.3557900938085, "confidence": [2021.2790906999492, 2021.4232876712329]}}, "branch_attrs": {"mutations": {"nuc": ["T17040C"]}}, "children": [{"name": "OU343873", "node_attrs": {"div": 40, "num_date": {"value": 2021.4369863013699, "confidence": [2021.4369863013699, 2021.4369863013699]}, "tsne_x": {"value": 21.12602584587507}, "umap_x": {"value": 1.4653965}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.960897}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.606036086965804}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.653093743370276}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.950995319080768}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.407833449836232}, "mds3": {"value": 23.207928740705874}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5620924226928313}}, "branch_attrs": {"mutations": {"nuc": ["C1710T", "C10626T", "C17747T"]}}}, {"name": "OU317736", "node_attrs": {"div": 38, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_x": {"value": 20.6524449802662}, "umap_x": {"value": 2.5734122}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.912031}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 41.24929143522}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.647024105104371}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -22.92277452358777}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -0.9410275965238328}, "mds3": {"value": 22.418404265058207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.363701185241396}}, "branch_attrs": {"mutations": {"nuc": ["C17339T"]}}}, {"name": "NODE_0000317", "node_attrs": {"div": 40, "num_date": {"value": 2021.5107116619445, "confidence": [2021.4295108022227, 2021.611050322901]}}, "branch_attrs": {"mutations": {"nuc": ["T21995C", "C22227T", "C25614T"], "S": ["Y145H", "A222V"]}, "labels": {"aa": "S: Y145H, A222V"}}, "children": [{"name": "IMS-10375-CVDP-AB100E46-F4B1-4D21-B108-FC780AC365CA", "node_attrs": {"div": 48, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_x": {"value": 22.4346902574801}, "umap_x": {"value": -1.4710412}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.641827}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.743656248982773}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4.2.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.33158865635304}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -38.502784422453935}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -1.7057329208109588}, "mds3": {"value": 26.747168444997765}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -9.377136789909962}}, "branch_attrs": {"mutations": {"nuc": ["G3563A", "C6968T", "A10323G", "G18523T", "C20603T", "C23997T", "C26110T", "T26159-", "T26160-", "A26161-", "A26162-", "T26163-", "C26164-", "C26165-", "A26166-", "G26167-", "T26168-", "G26526T"], "S": ["P812L"]}, "labels": {"aa": "S: P812L"}}}, {"name": "NODE_0000318", "node_attrs": {"div": 42, "num_date": {"value": 2021.6064923190681, "confidence": [2021.5369468212223, 2021.650684931507]}}, "branch_attrs": {"mutations": {"nuc": ["C27143T", "C29670T"]}}, "children": [{"name": "OX738141", "node_attrs": {"div": 51, "num_date": {"value": 2021.9027397260274, "confidence": [2021.9027397260274, 2021.9027397260274]}, "tsne_x": {"value": 22.66306057685353}, "umap_x": {"value": -1.5592487}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.553907}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 34.33388078638603}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.517933091663004}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -41.39974941317039}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.2937591442110157}, "mds3": {"value": 24.660942383156275}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.0682090191988585}}, "branch_attrs": {"mutations": {"nuc": ["G2632T", "T3682C", "A5484G", "G10870T", "C11454T", "C15251T", "T20520C", "C26882T", "G28195T"]}}}, {"name": "OU636974", "node_attrs": {"div": 43, "num_date": {"value": 2021.650684931507, "confidence": [2021.650684931507, 2021.650684931507]}, "tsne_x": {"value": 22.071357261320426}, "umap_x": {"value": 0.5393907}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.125404}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.6386077703835117}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.481012878007643}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.32592432763576}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.058708424040519}, "mds3": {"value": 22.39560080888664}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.090922637055784}}, "branch_attrs": {"mutations": {"nuc": ["T7767G"]}}}]}]}, {"name": "NODE_0001000", "node_attrs": {"div": 37, "num_date": {"value": 2021.3810305207512, "confidence": [2021.2565214192282, 2021.4231704271992]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000320", "node_attrs": {"div": 38, "num_date": {"value": 2021.4953455419306, "confidence": [2021.3356345204954, 2021.5383105739447]}}, "branch_attrs": {"mutations": {"nuc": ["T4237C"]}}, "children": [{"name": "OX586437", "node_attrs": {"div": 39, "num_date": {"value": 2021.5520547945205, "confidence": [2021.5520547945205, 2021.5520547945205]}, "tsne_x": {"value": 20.934231782520754}, "umap_x": {"value": 2.3238633}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.00021}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 17.040920676446465}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.717563238911987}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.982305064167186}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Wales"}, "mds2": {"value": -2.157622203914729}, "mds3": {"value": 23.447791702354543}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -13.552266142555322}}, "branch_attrs": {"mutations": {"nuc": ["C4276T"]}}}, {"name": "OU725538", "node_attrs": {"div": 44, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_x": {"value": 21.63000138819716}, "umap_x": {"value": -0.30243367}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.33797}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.59956891098641}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.286669099727469}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.354149690847734}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -3.150869812344056}, "mds3": {"value": 21.59325990761153}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5741757429031182}}, "branch_attrs": {"mutations": {"nuc": ["C2574T", "G11332T", "C22858T", "C26131T", "C28308T", "C28807T"]}}}]}, {"name": "NODE_0001003", "node_attrs": {"div": 37, "num_date": {"value": 2021.3892870668078, "confidence": [2021.2586889365698, 2021.4269949257316]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001006", "node_attrs": {"div": 37, "num_date": {"value": 2021.4132102850476, "confidence": [2021.2589039400248, 2021.4365590304192]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX718527", "node_attrs": {"div": 39, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_x": {"value": 20.93188058078725}, "umap_x": {"value": 1.7910287}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.980934}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 15.832311156847622}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.671193200576877}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.215748511454983}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -1.927012583468196}, "mds3": {"value": 23.344982469677195}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -11.392640700770375}}, "branch_attrs": {"mutations": {"nuc": ["C18744T", "G29140T"]}}}, {"name": "NODE_0000331", "node_attrs": {"div": 39, "num_date": {"value": 2021.495511322045, "confidence": [2021.3449835510096, 2021.548248950557]}}, "branch_attrs": {"mutations": {"nuc": ["C1281T", "T4183C"]}}, "children": [{"name": "OU750579", "node_attrs": {"div": 44, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_x": {"value": 21.887912624512584}, "umap_x": {"value": -0.5174026}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.328154}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.605399308219941}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.426194936692738}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.41496838016133}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -4.206011911971831}, "mds3": {"value": 23.87365242723208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5700643861037313}}, "branch_attrs": {"mutations": {"nuc": ["A1904G", "A4547G", "G10870T", "C20936T", "C28657T"]}}}, {"name": "NODE_0000332", "node_attrs": {"div": 41, "num_date": {"value": 2021.5619585281065, "confidence": [2021.4730888412203, 2021.6042768747627]}}, "branch_attrs": {"mutations": {"nuc": ["T15849C", "C22639T"]}}, "children": [{"name": "Switzerland/BS-UHB-42993665/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.6123287671232, "confidence": [2021.6123287671232, 2021.6123287671232]}, "tsne_x": {"value": 21.95204319603192}, "umap_x": {"value": 1.8308578}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.200552}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 9.99012754197219}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.364209198712045}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -20.284562737807093}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Basel-Stadt"}, "mds2": {"value": -8.007730260410208}, "mds3": {"value": 26.25121180268931}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 27.23970398111908}}, "branch_attrs": {"mutations": {"nuc": ["C4246T", "C5407T"]}}}, {"name": "OU834925", "node_attrs": {"div": 44, "num_date": {"value": 2021.7438356164384, "confidence": [2021.7438356164384, 2021.7438356164384]}, "tsne_x": {"value": 22.007540826169368}, "umap_x": {"value": -0.465573}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.266382}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.606600140514069}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.378359137924887}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.40800555387134}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": -3.285190064588061}, "mds3": {"value": 24.05005841603023}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5641639953907012}}, "branch_attrs": {"mutations": {"nuc": ["T11134C", "C14216T", "G22577T"], "S": ["G339C"]}, "labels": {"aa": "S: G339C"}}}]}]}]}, {"name": "NODE_0001009", "node_attrs": {"div": 37, "num_date": {"value": 2021.4132863095872, "confidence": [2021.2582053983376, 2021.4284686319293]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000324", "node_attrs": {"div": 38, "num_date": {"value": 2021.4691782336597, "confidence": [2021.4169689947573, 2021.4698630136986]}}, "branch_attrs": {"mutations": {"nuc": ["T16056C"]}}, "children": [{"name": "OU998774", "node_attrs": {"div": 45, "num_date": {"value": 2021.7794520547945, "confidence": [2021.7794520547945, 2021.7794520547945]}, "tsne_x": {"value": 21.338420316347708}, "umap_x": {"value": 1.3713717}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.37357}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 40.187322017851}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 11.883004532021744}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -18.97790857004269}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Baden-Wuerttemberg"}, "mds2": {"value": -9.75323981694218}, "mds3": {"value": 28.988433958560822}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.55973084165782}}, "branch_attrs": {"mutations": {"nuc": ["G7331A", "C9286T", "C16338T", "A21987G", "G29628T", "C29679T", "G29734T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "OU380883", "node_attrs": {"div": 38, "num_date": {"value": 2021.4698630136986, "confidence": [2021.4698630136986, 2021.4698630136986]}, "tsne_x": {"value": 20.65832750409504}, "umap_x": {"value": 2.5444937}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.976439}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.041278522730246}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.603499751086808}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.093571453110226}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": -1.129708912327506}, "mds3": {"value": 22.074847812063403}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.3356606616020485}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001011", "node_attrs": {"div": 37, "num_date": {"value": 2021.4146178896538, "confidence": [2021.260976862657, 2021.4407432332493]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0564/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5, "confidence": [2021.5, 2021.5]}, "tsne_x": {"value": 20.963737865666868}, "umap_x": {"value": 2.390353}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.26208}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 47.2243434876068}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.44453128233114}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -19.880892291922105}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -2.704964416715755}, "mds3": {"value": 25.04745081004844}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 8.244376045774308}}, "branch_attrs": {"mutations": {"nuc": ["G2731C", "G2813A", "A13712G"]}}}, {"name": "NODE_0001012", "node_attrs": {"div": 37, "num_date": {"value": 2021.4212703665644, "confidence": [2021.2624614893039, 2021.4568141936165]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU534667", "node_attrs": {"div": 42, "num_date": {"value": 2021.5520547945205, "confidence": [2021.5520547945205, 2021.5520547945205]}, "tsne_x": {"value": 21.3840536089204}, "umap_x": {"value": 1.0598038}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.17156}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.457537277905236}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.473463017403466}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.08462678986714}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -6.213297133034247}, "mds3": {"value": 22.49782925340464}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -0.3091055173080484}}, "branch_attrs": {"mutations": {"nuc": ["G1444A", "G5437T", "C5850T", "C20844T", "T28921A"]}}}, {"name": "NODE_0001013", "node_attrs": {"div": 37, "num_date": {"value": 2021.4494602902723, "confidence": [2021.2619255472441, 2021.486497108785]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU426505", "node_attrs": {"div": 40, "num_date": {"value": 2021.5, "confidence": [2021.5, 2021.5]}, "tsne_x": {"value": 21.129191666543623}, "umap_x": {"value": 1.4657909}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.946955}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.60633020193189}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.638854029981704}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.751577667217003}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": -2.431463453705627}, "mds3": {"value": 23.39525362400937}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5617594583776365}}, "branch_attrs": {"mutations": {"nuc": ["G675T", "C8772T", "C24374A"], "S": ["L938I"]}, "labels": {"aa": "S: L938I"}}}, {"name": "NODE_0001014", "node_attrs": {"div": 37, "num_date": {"value": 2021.480036386662, "confidence": [2021.21050913924, 2021.5140295244728]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU458771", "node_attrs": {"div": 39, "num_date": {"value": 2021.5493150684931, "confidence": [2021.5493150684931, 2021.5493150684931]}, "tsne_x": {"value": 20.986521115093066}, "umap_x": {"value": 1.7294693}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.925722}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.60639273253629}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.68054725781501}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.5709138554009}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.416978986668567}, "mds3": {"value": 23.08286180261519}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5613519758425449}}, "branch_attrs": {"mutations": {"nuc": ["G2246A", "C6924T"]}}}, {"name": "NODE_0001015", "node_attrs": {"div": 37, "num_date": {"value": 2021.4972657871674, "confidence": [2021.2103837428926, 2021.557844318533]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000328", "node_attrs": {"div": 39, "num_date": {"value": 2021.6470076000544, "confidence": [2021.4302830820816, 2021.7331564922636]}}, "branch_attrs": {"mutations": {"nuc": ["C21364T", "C25844T"]}}, "children": [{"name": "OU955997", "node_attrs": {"div": 44, "num_date": {"value": 2021.8068493150686, "confidence": [2021.8068493150686, 2021.8068493150686]}, "tsne_x": {"value": 21.67855155734449}, "umap_x": {"value": -0.41865078}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.263071}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.837254532896441}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.408448738184774}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -32.93507191356421}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -4.622047351468194}, "mds3": {"value": 23.95970343565209}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5579514631989728}}, "branch_attrs": {"mutations": {"nuc": ["C1420T", "C5730T", "T15521A", "A23083T", "G29744A"]}}}, {"name": "OV100304", "node_attrs": {"div": 41, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_x": {"value": 21.318558242528088}, "umap_x": {"value": 1.162928}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.022028}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.868065934869624}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.563679706564908}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.22656942157544}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Scotland"}, "mds2": {"value": -2.813753234509991}, "mds3": {"value": 23.313632725453854}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.588098517635735}}, "branch_attrs": {"mutations": {"nuc": ["G20062A", "C24374T"], "S": ["L938F"]}, "labels": {"aa": "S: L938F"}}}]}, {"name": "NODE_0001017", "node_attrs": {"div": 37, "num_date": {"value": 2021.5124764572429, "confidence": [2021.212697164489, 2021.5710544236902]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU963382", "node_attrs": {"div": 43, "num_date": {"value": 2021.7164383561644, "confidence": [2021.7164383561644, 2021.7164383561644]}, "tsne_x": {"value": 21.66646073758009}, "umap_x": {"value": 0.5670156}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.10422}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.050162429302891}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.757423300000216}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.39623298021986}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -4.148182584411901}, "mds3": {"value": 22.098799671549003}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.6359428632021622}}, "branch_attrs": {"mutations": {"nuc": ["C3177T", "C13458T", "C17474T", "G26506T", "C27920T", "C29253T"]}}}, {"name": "NODE_0001018", "node_attrs": {"div": 37, "num_date": {"value": 2021.5322296145298, "confidence": [2021.2160105435544, 2021.5886071707791]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-181748/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.768493150685, "confidence": [2021.768493150685, 2021.768493150685]}, "tsne_x": {"value": 22.476258310855208}, "umap_x": {"value": -1.4760574}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.63665}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.56604226470204}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.083990250683645}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.28906147229349}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Hovedstaden"}, "mds2": {"value": -8.127200633415171}, "mds3": {"value": 39.51281680797726}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5864185709782164}}, "branch_attrs": {"mutations": {"nuc": ["C140T", "T209C", "A2276G", "T2308C", "A9685G", "T10084A", "A10323G", "G10688T", "A11506G", "C16293T", "C19524T", "C20404T", "A28967G"]}}}, {"name": "OU722453", "node_attrs": {"div": 39, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_x": {"value": 20.93553021782894}, "umap_x": {"value": 2.315846}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.902094}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.275503021834934}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "tsne_y": {"value": 12.62455814428457}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.839551810287347}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "England"}, "mds2": {"value": -2.3794410882552635}, "mds3": {"value": 22.64359502883349}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 6.411841590608568}}, "branch_attrs": {"mutations": {"nuc": ["G8131T", "C8247T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001019", "node_attrs": {"div": 35, "num_date": {"value": 2021.2669562829858, "confidence": [2021.0248131231845, 2021.3754765238582]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001020", "node_attrs": {"div": 35, "num_date": {"value": 2021.2828347423426, "confidence": [2021.0360645369467, 2021.386339545253]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000346", "node_attrs": {"div": 37, "num_date": {"value": 2021.3567154465684, "confidence": [2021.2797165643442, 2021.3942099304977]}}, "branch_attrs": {"mutations": {"nuc": ["A15012G", "C24863T"], "S": ["H1101Y"]}, "labels": {"aa": "S: H1101Y"}}, "children": [{"name": "BHR/21922052755_S26_L001/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_x": {"value": 20.884569818529304}, "umap_x": {"value": 0.93653154}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.288176}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 36.62414900637138}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.107"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.826202855180671}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -28.558364741649225}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Bahrain"}, "mds2": {"value": -11.822073489716663}, "mds3": {"value": 20.85364988241212}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 15.63414146945596}}, "branch_attrs": {"mutations": {"nuc": ["T1871G", "C2773T", "A2903G", "C4113T", "C5239T", "C6428T", "C15952T", "A21987G", "C29284T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "NODE_0000347", "node_attrs": {"div": 38, "num_date": {"value": 2021.4041095890411, "confidence": [2021.3747095026163, 2021.4041095890411]}}, "branch_attrs": {"mutations": {"nuc": ["C29358T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-L107/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_x": {"value": 20.486215325982013}, "umap_x": {"value": 1.5066129}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.000732}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.946065929128802}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.107"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.522250397530582}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.35010175299028}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "South Africa"}, "mds2": {"value": -4.580496998755601}, "mds3": {"value": 22.800948852730222}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 2.014517883848411}}, "branch_attrs": {"mutations": {"nuc": ["A10055C", "C28311T"]}}}, {"name": "NZL/21MV0485/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4041095890411, "confidence": [2021.4041095890411, 2021.4041095890411]}, "tsne_x": {"value": 20.26864695976624}, "umap_x": {"value": 2.4672213}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.96597}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.931402723550585}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.107"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.232825218665598}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.72475312999217}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.2211326171767916}, "mds3": {"value": 22.7623368071051}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.9277582026834578}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001023", "node_attrs": {"div": 38, "num_date": {"value": 2021.411823863273, "confidence": [2021.392546876407, 2021.5657534246575]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NJ-CDC-FG-145106/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7493150684932, "confidence": [2021.7493150684932, 2021.7493150684932]}, "tsne_x": {"value": 20.73527196391653}, "umap_x": {"value": -0.1033672}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.161526}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.592622271397418}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.107"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.77857686285055}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.240875739702066}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Jersey"}, "mds2": {"value": 1.0409666616183255}, "mds3": {"value": 26.86364441275592}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -6.009326934800779}}, "branch_attrs": {"mutations": {"nuc": ["G1085T", "A2655C", "G9220A", "C10871A", "C11050T", "G27758T"]}}}, {"name": "MNG/202107065/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_x": {"value": 20.479772205973923}, "umap_x": {"value": 1.4531827}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.998062}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.127249750508054}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.107"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.522818070478031}, "country": {"value": "Mongolia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.39143397816463}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Mongolia"}, "mds2": {"value": -1.1483103153848822}, "mds3": {"value": 23.90027910250355}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -11.320627390805951}}, "branch_attrs": {"mutations": {"nuc": ["G18851A", "C29708T"]}}}]}]}]}, {"name": "NODE_0001025", "node_attrs": {"div": 35, "num_date": {"value": 2021.3296564710188, "confidence": [2021.03131332614, 2021.465022129519]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001027", "node_attrs": {"div": 35, "num_date": {"value": 2021.3387639346333, "confidence": [2021.0338755663292, 2021.4847477159658]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0618/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5301369863014, 2021.5301369863014]}, "tsne_x": {"value": 20.26208933098912}, "umap_x": {"value": 1.2926306}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.24729}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.598806785147991}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.4789872232427}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.645529243635448}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.436844798422376}, "mds3": {"value": 29.04644797029912}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.5708615664413558}}, "branch_attrs": {"mutations": {"nuc": ["G410T", "T4149C", "G7273A", "A16775G", "A22005C", "G25855T"], "S": ["N148T"]}, "labels": {"aa": "S: N148T"}}}, {"name": "NODE_0001028", "node_attrs": {"div": 35, "num_date": {"value": 2021.3553807476615, "confidence": [2021.0351842113605, 2021.495574660406]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Switzerland/BS-UHB-42982424/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_x": {"value": 20.885768787077133}, "umap_x": {"value": -0.39654788}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.248234}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.2510359430128295}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.42"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.557841929578473}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -33.520948286141966}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Basel-Stadt"}, "mds2": {"value": 0.6895534705329324}, "mds3": {"value": 23.75796537203744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -2.665677538992965}}, "branch_attrs": {"mutations": {"nuc": ["A1230G", "G2258A", "C11747T", "C12073T", "C14120T", "C15237T", "G15910T", "C23718T", "C25872T"], "S": ["T719I"]}, "labels": {"aa": "S: T719I"}}}, {"name": "NODE_0001029", "node_attrs": {"div": 35, "num_date": {"value": 2021.4149604024965, "confidence": [2021.0293595373466, 2021.5193543826863]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DJI/NAMRU3_IT003/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_x": {"value": 20.85450165426301}, "umap_x": {"value": -0.43948227}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.185751}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.88044513117758}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.120"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 11.545760171931835}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.33388314728674}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Djibouti"}, "mds2": {"value": -8.676830180102023}, "mds3": {"value": 26.49654551038609}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5854877016090858}}, "branch_attrs": {"mutations": {"nuc": ["G347A", "C6408T", "C8139T", "G11540T", "C13384T", "C17825T", "G20383A", "A25003G", "C26177T"]}}}, {"name": "USA/MA-CDC-LC0393279/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8643835616438, "confidence": [2021.8643835616438, 2021.8643835616438]}, "tsne_x": {"value": 22.649870007103573}, "umap_x": {"value": -0.3716568}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.01343}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.302826253650312}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.114"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.97922317272855}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.459522935216896}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Massachusetts"}, "mds2": {"value": -8.504912793040628}, "mds3": {"value": 33.97775407432163}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 4.888214578813708}}, "branch_attrs": {"mutations": {"nuc": ["C884T", "C2706T", "C6848A", "G8117T", "G16914T", "G17658T", "A19020T", "G19677T", "C27513T", "C29545T"]}}}]}]}]}, {"name": "NODE_0000338", "node_attrs": {"div": 37, "num_date": {"value": 2021.4505865022138, "confidence": [2021.3676862662417, 2021.4753424657533]}}, "branch_attrs": {"mutations": {"nuc": ["C5239T", "T5514C"]}}, "children": [{"name": "Hu/Kng/211391", "node_attrs": {"div": 37, "num_date": {"value": 2021.4753424657533, "confidence": [2021.4753424657533, 2021.4753424657533]}, "tsne_x": {"value": 20.241804514975147}, "umap_x": {"value": 2.4875815}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.063894}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.627441050494151}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.053550455594552}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -20.84149451986903}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Japan"}, "mds2": {"value": -2.023189202363589}, "mds3": {"value": 23.46021766172068}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 0.670766274858626}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001031", "node_attrs": {"div": 37, "num_date": {"value": 2021.4951006876481, "confidence": [2021.359917373359, 2021.5246575342467]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LC654316", "node_attrs": {"div": 37, "num_date": {"value": 2021.5246575342467, "confidence": [2021.5246575342467, 2021.5246575342467]}, "tsne_x": {"value": 20.31182034565477}, "umap_x": {"value": 2.4554641}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.938528}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.288485492325711}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.070142309117164}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.596356857599226}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Tokyo"}, "mds2": {"value": -1.874000439681735}, "mds3": {"value": 23.01145037383256}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -12.021243086544308}}, "branch_attrs": {"mutations": {}}}, {"name": "JPN/JP_HiroFH212c/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7438356164384, "confidence": [2021.7438356164384, 2021.7438356164384]}, "tsne_x": {"value": 21.73317337017616}, "umap_x": {"value": -0.31239477}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.155039}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.086691198549593}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.939004706909408}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.22944412746161}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Hiroshima"}, "mds2": {"value": -10.02932866500227}, "mds3": {"value": 25.143249425564363}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.125109859917961}}, "branch_attrs": {"mutations": {"nuc": ["G219T", "G18972T", "A19445G", "C19881T", "C22353T", "C25844T", "C27503T", "C27535T"], "S": ["A264V"]}, "labels": {"aa": "S: A264V"}}}]}, {"name": "NODE_0000341", "node_attrs": {"div": 39, "num_date": {"value": 2021.495054533022, "confidence": [2021.431261289455, 2021.5265736486226]}}, "branch_attrs": {"mutations": {"nuc": ["C5365T", "C28170T"]}}, "children": [{"name": "Japan/SZ-NIG-Y211173/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5904109589042, "confidence": [2021.5904109589042, 2021.5904109589042]}, "tsne_x": {"value": 21.898496433392552}, "umap_x": {"value": -0.85003823}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.92028}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.969027950863163}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.04357963726589}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.049719111091623}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Shizuoka"}, "mds2": {"value": -10.25965833293624}, "mds3": {"value": 33.022036443544174}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.268274160170723}}, "branch_attrs": {"mutations": {"nuc": ["A4548G", "T4729C", "C13994T", "G15313A", "C17439T", "T17442C", "G20632A"]}}}, {"name": "NODE_0001033", "node_attrs": {"div": 39, "num_date": {"value": 2021.509315879658, "confidence": [2021.4666322945088, 2021.5565832200416]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y212056/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_x": {"value": 21.446681921541625}, "umap_x": {"value": 1.1927091}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.165257}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.337006672882441}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.823547644962405}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.384870387394617}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Shizuoka"}, "mds2": {"value": -3.677659608326784}, "mds3": {"value": 24.528254840565143}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -4.875625711605977}}, "branch_attrs": {"mutations": {"nuc": ["A8843G", "A22110G"], "S": ["Q183R"]}, "labels": {"aa": "S: Q183R"}}}, {"name": "NODE_0001034", "node_attrs": {"div": 39, "num_date": {"value": 2021.5293232572483, "confidence": [2021.4741145080418, 2021.5603195915135]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "JPN/HiroFH92c/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5739726027398, "confidence": [2021.5739726027398, 2021.5739726027398]}, "tsne_x": {"value": 21.480202938148288}, "umap_x": {"value": 1.2891008}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.20995}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.111330818189591}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.895484434929628}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.1279271074354}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Japan"}, "mds2": {"value": -7.7935179081523955}, "mds3": {"value": 24.89238482064896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -7.620732988167872}}, "branch_attrs": {"mutations": {"nuc": ["C1627T", "C3593T"]}}}, {"name": "NODE_0001035", "node_attrs": {"div": 39, "num_date": {"value": 2021.5513365290963, "confidence": [2021.4750141896895, 2021.606279454548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-4-C3/2022", "node_attrs": {"div": 47, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": 21.99122811695081}, "umap_x": {"value": -1.0941256}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.821627}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.824851758020071}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.089583949701138}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.33823531732692}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Shizuoka"}, "mds2": {"value": -11.590755210403804}, "mds3": {"value": 30.670786769415056}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.905330173946803}}, "branch_attrs": {"mutations": {"nuc": ["C2509T", "T6634C", "C11986A", "A22803G", "G25552T", "C25701T", "G28541T", "C29144T"], "S": ["Q414R"]}, "labels": {"aa": "S: Q414R"}}}, {"name": "Japan/SZ-NIG-Y211977/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_x": {"value": 21.55447080964537}, "umap_x": {"value": 0.8278059}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.240013}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.318691651387299}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.879643387217245}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.584954013326616}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Shizuoka"}, "mds2": {"value": -8.034435416708334}, "mds3": {"value": 26.76418041217012}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.430403028038263}}, "branch_attrs": {"mutations": {"nuc": ["C10726T", "C15857T", "C29445T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0001036", "node_attrs": {"div": 35, "num_date": {"value": 2021.3235510791444, "confidence": [2021.0234550844273, 2021.4766384582588]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001038", "node_attrs": {"div": 35, "num_date": {"value": 2021.3481363820172, "confidence": [2021.0257539266213, 2021.509026752447]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000375", "node_attrs": {"div": 37, "num_date": {"value": 2021.4971663157787, "confidence": [2021.1813830827848, 2021.5951598563577]}}, "branch_attrs": {"mutations": {"nuc": ["G22335T", "G22813T"], "S": ["W258L", "K417N"]}, "labels": {"aa": "S: W258L, K417N"}}, "children": [{"name": "IND/barcode_22_MN908947.3/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_x": {"value": 18.9510829112914}, "umap_x": {"value": 1.862489}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.349657}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.6783789867006975}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.701249644611355}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -18.49476233725144}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "India"}, "mds2": {"value": -8.476914740730377}, "mds3": {"value": 27.4360237814546}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -17.214585912864155}}, "branch_attrs": {"mutations": {"nuc": ["C12473T", "G12569T", "A21987G", "-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253A", "-28271A", "C29769T"], "S": ["D142G", "X156E", "-157F", "X158R", "X1274*"]}, "labels": {"aa": "S: D142G, X156E, -157F, X158R, X1274*"}}}, {"name": "LAO/LOMWRU-0762/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7219178082191, "confidence": [2021.7219178082191, 2021.7219178082191]}, "tsne_x": {"value": 22.52244430759052}, "umap_x": {"value": -0.5206342}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.240042}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.562035792969086}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 14.45680609588953}, "country": {"value": "Laos"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.957146275326625}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Vientiane"}, "mds2": {"value": -11.454544594389064}, "mds3": {"value": 26.979609107930013}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 20.741735255279075}}, "branch_attrs": {"mutations": {"nuc": ["A861G", "T967C", "G5326A", "G6446T", "A8182G", "T18369G", "C27735A", "G28966A"]}}}]}, {"name": "NODE_0000363", "node_attrs": {"div": 36, "num_date": {"value": 2021.4941964850664, "confidence": [2021.1382905088444, 2021.5881745685494]}}, "branch_attrs": {"mutations": {"nuc": ["A27338T"]}}, "children": [{"name": "USA/CA-CDC-FG-108316/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_x": {"value": 20.656391316354267}, "umap_x": {"value": 1.0319515}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.27374}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.137073355605081}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.118"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.677944933820198}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.8599743002122}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "California"}, "mds2": {"value": -2.4159537746573214}, "mds3": {"value": 30.146192147899704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -5.898472928978247}}, "branch_attrs": {"mutations": {"nuc": ["G487T", "G515-", "T516-", "T517-", "T826C", "C4321T", "C6113T", "G7328T", "G10271A"]}}}, {"name": "COM/SS3792/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7904109589042, "confidence": [2021.7904109589042, 2021.7904109589042]}, "tsne_x": {"value": 20.17843676474984}, "umap_x": {"value": 1.3127635}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.182125}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.875792189235253}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.118"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.788312460115852}, "country": {"value": "Union of the Comoros"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.62285547002623}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Union of the Comoros"}, "mds2": {"value": -7.205738704273783}, "mds3": {"value": 28.55782691358045}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 1.5894859647881383}}, "branch_attrs": {"mutations": {"nuc": ["C17012T", "C17676T", "A20963G", "C24358A", "A25449T"]}}}]}]}, {"name": "NODE_0001041", "node_attrs": {"div": 35, "num_date": {"value": 2021.3373985142455, "confidence": [2021.026104712529, 2021.4835616438356]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0519/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4835616438356, "confidence": [2021.4835616438356, 2021.4835616438356]}, "tsne_x": {"value": 20.221614239710604}, "umap_x": {"value": 1.8725479}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.011877}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.244457874547747}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 13.122672764512137}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.860429602562142}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -1.6718989785800378}, "mds3": {"value": 24.28589733228289}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.01994946882986}}, "branch_attrs": {"mutations": {"nuc": ["C1326T", "C6031T", "T13188C", "C22264T"]}}}, {"name": "NODE_0000377", "node_attrs": {"div": 37, "num_date": {"value": 2021.416000339276, "confidence": [2021.1097476739903, 2021.5599549144363]}}, "branch_attrs": {"mutations": {"nuc": ["G21372T", "G27604A"]}}, "children": [{"name": "USA/SRL_331609085/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.9712328767123, "confidence": [2021.9712328767123, 2021.9712328767123]}, "tsne_x": {"value": 21.875818404743985}, "umap_x": {"value": -1.1559315}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.756767}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.8571425371302308}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 16.35193490569127}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.349543492279345}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Mississippi"}, "mds2": {"value": -10.487855186594556}, "mds3": {"value": 37.25838101266188}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 9.640754303339646}}, "branch_attrs": {"mutations": {"nuc": ["A808G", "C5157T", "T12739C", "A15914C", "T17685C", "C18747T", "C22082T", "G22103A", "T25676C", "G26049T", "G26828T", "C29311T"], "S": ["P174S", "G181R"]}, "labels": {"aa": "S: P174S, G181R"}}}, {"name": "NODE_0000378", "node_attrs": {"div": 38, "num_date": {"value": 2021.510027562228, "confidence": [2021.202450900943, 2021.563647751216]}}, "branch_attrs": {"mutations": {"nuc": ["A13482G"]}}, "children": [{"name": "USA/NY-CDC-ASC210105302/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_x": {"value": 20.595985664348262}, "umap_x": {"value": -0.44019446}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.037897}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.1670447579783145}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "tsne_y": {"value": 16.477734035668266}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -34.4466308425669}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New York"}, "mds2": {"value": -1.649372091658048}, "mds3": {"value": 23.695949620053483}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": -8.13649768264701}}, "branch_attrs": {"mutations": {"nuc": ["C1420T", "C4071T", "C4586T", "A14213C", "A21987G", "A25286G", "T26515C", "C27603T", "C29358T"], "S": ["D142G", "S1242G"]}, "labels": {"aa": "S: D142G, S1242G"}}}, {"name": "NODE_0000379", "node_attrs": {"div": 39, "num_date": {"value": 2021.588322968968, "confidence": [2021.552536160594, 2021.6299553264728]}}, "branch_attrs": {"mutations": {"nuc": ["G19563T"]}}, "children": [{"name": "NZL/21MV1350/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.672602739726, "confidence": [2021.672602739726, 2021.672602739726]}, "tsne_x": {"value": 20.60789291168009}, "umap_x": {"value": 1.836479}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.76696}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.244106692154527}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.927690917502597}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.50510692072622}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.141222066226861}, "mds3": {"value": 26.122283682906986}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.425280549885423}}, "branch_attrs": {"mutations": {"nuc": ["T18672C"]}}}, {"name": "NZL/21MV1119/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6561643835616, "confidence": [2021.6561643835616, 2021.6561643835616]}, "tsne_x": {"value": 20.605431190088968}, "umap_x": {"value": 1.8145983}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.67224}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.276835577124031}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.92317914920202}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.46464741864307}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.137980093672214}, "mds3": {"value": 26.15304749100029}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.622612094701328}}, "branch_attrs": {"mutations": {"nuc": ["T7605C"]}}}, {"name": "NODE_0001046", "node_attrs": {"div": 39, "num_date": {"value": 2021.6479440545745, "confidence": [2021.5648771583255, 2021.6889996989396]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1538/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_x": {"value": 20.5600530380368}, "umap_x": {"value": 1.8973025}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.67863}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.27679431203129}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.72134210760737}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.112170663790053}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -3.5117763245569646}, "mds3": {"value": 25.0508546291753}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.62252238632649}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV1499/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_x": {"value": 20.608318261534727}, "umap_x": {"value": 1.8726534}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.6166}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.276778407934006}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.935521118657627}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.857037082735506}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.082354405174839}, "mds3": {"value": 26.13924512931972}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.622460609307955}}, "branch_attrs": {"mutations": {"nuc": ["G25540A"]}}}]}, {"name": "NODE_0000388", "node_attrs": {"div": 40, "num_date": {"value": 2021.6316437044884, "confidence": [2021.606650060542, 2021.6397260273973]}}, "branch_attrs": {"mutations": {"nuc": ["C11902T"]}}, "children": [{"name": "NZL/21CV0489/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7027397260274, "confidence": [2021.7027397260274, 2021.7027397260274]}, "tsne_x": {"value": 20.69274444324544}, "umap_x": {"value": 0.88779855}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.89519}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.278384726169328}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.275650050924568}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.53705894929868}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -5.058480362331636}, "mds3": {"value": 27.355177801369685}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.641270630215589}}, "branch_attrs": {"mutations": {"nuc": ["A18671C", "G28195T"]}}}, {"name": "NZL/21CV0338/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6561643835616, "confidence": [2021.6561643835616, 2021.6561643835616]}, "tsne_x": {"value": 20.65172478203895}, "umap_x": {"value": 1.675302}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.688116}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.2764024928631565}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.004365092144583}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.76517939472097}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.061442022109113}, "mds3": {"value": 25.72808406049469}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.624616522363253}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0274/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6479452054793, 2021.6479452054793]}, "tsne_x": {"value": 20.602741737884}, "umap_x": {"value": 1.8090466}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.712027}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.348273862636151}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.934235465203503}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.297995928481864}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.13254731909142}, "mds3": {"value": 26.12211090051494}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.092727081511375}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0928/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6424657534246, "confidence": [2021.6424657534246, 2021.6424657534246]}, "tsne_x": {"value": 20.63791816121306}, "umap_x": {"value": 1.6790819}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.609089}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.351613136071841}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.105131596072336}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.72739671385702}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -5.47375250862068}, "mds3": {"value": 26.52221011789836}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.006743222336496}}, "branch_attrs": {"mutations": {"nuc": ["C7869T"]}}}, {"name": "NZL/21CH0118/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6424657534246, "confidence": [2021.6424657534246, 2021.6424657534246]}, "tsne_x": {"value": 20.610299726454368}, "umap_x": {"value": 1.8164134}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.610085}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.274121015256341}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.955253013268395}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.44025281322945}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.114466380999308}, "mds3": {"value": 25.92847251478656}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.62626773984602}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0836/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6397260273973, "confidence": [2021.6397260273973, 2021.6397260273973]}, "tsne_x": {"value": 20.610268144908016}, "umap_x": {"value": 1.8134925}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.671364}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.276512872526991}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.95459091156542}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.32111226011535}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.139819798570596}, "mds3": {"value": 25.93101856447366}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.6244243835868}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001049", "node_attrs": {"div": 40, "num_date": {"value": 2021.6506065693018, "confidence": [2021.62294538527, 2021.6534246575343]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1501/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_x": {"value": 20.678946040825057}, "umap_x": {"value": 1.2462275}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.73282}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.276585922416865}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.155068597689302}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.5330392704832}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.467717652550238}, "mds3": {"value": 26.57399544852116}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.624625400408316}}, "branch_attrs": {"mutations": {"nuc": ["G3320T"]}}}, {"name": "NZL/21MV1094/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6534246575343, "confidence": [2021.6534246575343, 2021.6534246575343]}, "tsne_x": {"value": 20.63365506710831}, "umap_x": {"value": 1.7642728}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.66818}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.324677868582979}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.974727741391684}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.035106994918777}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.084267082338689}, "mds3": {"value": 25.830281744688023}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.931412186544174}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001051", "node_attrs": {"div": 40, "num_date": {"value": 2021.644528573757, "confidence": [2021.6245212098834, 2021.6698630136987]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1313/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_x": {"value": 20.63365380878}, "umap_x": {"value": 1.7161044}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.624779}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.276512872526991}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.974730110594551}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.038233588830625}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.083798712976515}, "mds3": {"value": 25.82835031476372}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.6244243835868}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001052", "node_attrs": {"div": 40, "num_date": {"value": 2021.6715146274357, "confidence": [2021.6410114535684, 2021.6808219178083]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1429/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_x": {"value": 20.48716337482233}, "umap_x": {"value": 2.5176363}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.013582}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.490140618157421}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.59705427765855}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.29669280334664}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -3.9694079031971854}, "mds3": {"value": 22.53481300299304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 14.777111064607256}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0772/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7739726027398, "confidence": [2021.7739726027398, 2021.7739726027398]}, "tsne_x": {"value": 20.61569427932607}, "umap_x": {"value": 0.39966553}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.954237}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.352786184299945}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.402556727370383}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.15483709574941}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.981383585385172}, "mds3": {"value": 28.152880446521102}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.11811408783886}}, "branch_attrs": {"mutations": {"nuc": ["C3096T", "G19872T", "G28628T"]}}}]}]}, {"name": "NODE_0000914", "node_attrs": {"div": 40, "num_date": {"value": 2021.632696380827, "confidence": [2021.6164781724067, 2021.6448630327957]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1582/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6972602739727, "confidence": [2021.6972602739727, 2021.6972602739727]}, "tsne_x": {"value": 20.656407622917943}, "umap_x": {"value": 1.68894}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.688925}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.324677868582979}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.01394528449122}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.87880591685408}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.024480449963963}, "mds3": {"value": 25.787949532246486}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.931412186544174}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000915", "node_attrs": {"div": 40, "num_date": {"value": 2021.6427375332964, "confidence": [2021.6276849769552, 2021.6458621366062]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1083/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.650684931507, "confidence": [2021.650684931507, 2021.650684931507]}, "tsne_x": {"value": 20.611195158320864}, "umap_x": {"value": 1.8104637}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.635065}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.276604575547295}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.954557114386342}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.21846169133017}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.154344972900901}, "mds3": {"value": 25.939742392761328}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.625906989194776}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001048", "node_attrs": {"div": 40, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6369015908813, 2021.6479452054793]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1002/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6479452054793, 2021.6479452054793]}, "tsne_x": {"value": 20.61130690390923}, "umap_x": {"value": 1.836104}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.617226}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.243806183405316}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.955647037300524}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.344386945074728}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.1476921605482335}, "mds3": {"value": 25.91858057973932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.427174805334882}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0311/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6534246575343, "confidence": [2021.6534246575343, 2021.6534246575343]}, "tsne_x": {"value": 20.6101861220654}, "umap_x": {"value": 1.827789}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.607872}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.2764024928631565}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.954536960848332}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.331511147136705}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -4.138473818798946}, "mds3": {"value": 25.92471173764985}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.624616522363253}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001053", "node_attrs": {"div": 39, "num_date": {"value": 2021.606515870363, "confidence": [2021.5268233696831, 2021.6851257814062]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0455/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.7, "confidence": [2021.7, 2021.7]}, "tsne_x": {"value": 20.601931936875395}, "umap_x": {"value": 1.8182026}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.619638}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.27679431203129}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.77657315408211}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.29291970701464}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -3.519463493407791}, "mds3": {"value": 24.91609368719085}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.62252238632649}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001055", "node_attrs": {"div": 39, "num_date": {"value": 2021.6248518183993, "confidence": [2021.5263462843848, 2021.6879259536959]}}, "branch_attrs": {"mutations": {"nuc": ["T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-"]}}, "children": [{"name": "NODE_0001056", "node_attrs": {"div": 39, "num_date": {"value": 2021.641727903263, "confidence": [2021.5264347932273, 2021.694200910341]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000406", "node_attrs": {"div": 41, "num_date": {"value": 2021.6960339213458, "confidence": [2021.6114207629118, 2021.7602739726028]}}, "branch_attrs": {"mutations": {"nuc": ["C19454T", "C29281T"]}}, "children": [{"name": "NZL/21MV1905/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7602739726028, "confidence": [2021.7602739726028, 2021.7602739726028]}, "tsne_x": {"value": 20.58993762224277}, "umap_x": {"value": 0.85655487}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.861097}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.014170415940462}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.508878550044724}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.433837420660552}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.313601640652811}, "mds3": {"value": 27.464631199499006}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.678805327836352}}, "branch_attrs": {"mutations": {"nuc": ["C10755T"]}}}, {"name": "NODE_0000407", "node_attrs": {"div": 42, "num_date": {"value": 2021.744915226521, "confidence": [2021.63347541042, 2021.8174480492287]}}, "branch_attrs": {"mutations": {"nuc": ["G22218A"], "S": ["G219D"]}, "labels": {"aa": "S: G219D"}}, "children": [{"name": "NZL/21MV2889/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8424657534247, "confidence": [2021.8424657534247, 2021.8424657534247]}, "tsne_x": {"value": 20.47835155272674}, "umap_x": {"value": 0.31200948}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.97562}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.986439256207258}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.780752429022913}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.99148286943338}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.508935898669591}, "mds3": {"value": 30.693521107482795}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.477790160631285}}, "branch_attrs": {"mutations": {"nuc": ["C12100T", "C23530T"]}}}, {"name": "NODE_0001059", "node_attrs": {"div": 42, "num_date": {"value": 2021.7683968769593, "confidence": [2021.63511459726, 2021.8322836657192]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3273/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8808219178081, "confidence": [2021.8808219178081, 2021.8808219178081]}, "tsne_x": {"value": 20.22972433685352}, "umap_x": {"value": 1.7488747}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.748522}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.742792471837618}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.51814122959522}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -22.02687434938048}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -8.422031335326263}, "mds3": {"value": 25.863953856342825}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 15.356563139174096}}, "branch_attrs": {"mutations": {"nuc": ["G19666A", "C28312T"]}}}, {"name": "NZL/21CV3283/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9136986301369, "confidence": [2021.9136986301369, 2021.9136986301369]}, "tsne_x": {"value": 20.541705826628128}, "umap_x": {"value": -0.8601229}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.960161}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.009603680997165}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 16.111044728704467}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -31.69564304704029}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.128958981360646}, "mds3": {"value": 30.342745309112168}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.67922240490097}}, "branch_attrs": {"mutations": {"nuc": ["C9180T", "C18483T", "C21156T", "G29440T"]}}}]}]}]}, {"name": "NODE_0001061", "node_attrs": {"div": 39, "num_date": {"value": 2021.6506557801397, "confidence": [2021.531341532107, 2021.6963810511832]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1822/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7493150684932, "confidence": [2021.7493150684932, 2021.7493150684932]}, "tsne_x": {"value": 20.60458491242974}, "umap_x": {"value": 0.9554815}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.854948}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.34629163747208}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.292522527988664}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.563250448019616}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.17435805717336}, "mds3": {"value": 28.17861764729017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.091765855300402}}, "branch_attrs": {"mutations": {"nuc": ["C6807A", "C21575T", "A23416T", "-27694T", "-27695T", "-27696T", "-27697C", "-27698T", "-27699T", "-27700A", "-27701T", "-27702T", "-27703G"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0001062", "node_attrs": {"div": 39, "num_date": {"value": 2021.6708803939039, "confidence": [2021.6119143926628, 2021.7023174450853]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001064", "node_attrs": {"div": 39, "num_date": {"value": 2021.688849352169, "confidence": [2021.6117192483441, 2021.7273760214775]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0858/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_x": {"value": 20.722079573259776}, "umap_x": {"value": 1.7783564}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.644033}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.566834506175727}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.108605786637856}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.80577250781614}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.7939694180209855}, "mds3": {"value": 24.66988003136678}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 13.334090436641366}}, "branch_attrs": {"mutations": {"nuc": ["C1426T", "-27694T", "-27695T", "-27696T", "T27704-", "T27705-", "G29554T"]}}}, {"name": "NZL/21MV1965/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7657534246575, "confidence": [2021.7657534246575, 2021.7657534246575]}, "tsne_x": {"value": 20.78170574819895}, "umap_x": {"value": 1.0899619}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.821098}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.051159629742848}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.243273285067064}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.64988580848556}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.902691190988008}, "mds3": {"value": 26.582881531758705}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.678164696565217}}, "branch_attrs": {"mutations": {"nuc": ["G3433T", "C8247T"]}}}]}, {"name": "NODE_0001066", "node_attrs": {"div": 39, "num_date": {"value": 2021.702650856095, "confidence": [2021.6203868916145, 2021.7054794520548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1609/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_x": {"value": 20.54823363419634}, "umap_x": {"value": 1.9340363}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.710993}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.736550157185301}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 14.70940710145766}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -22.65477989137314}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "Auckland"}, "mds2": {"value": -3.935307290131847}, "mds3": {"value": 24.78747575946901}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.25036672148341}}, "branch_attrs": {"mutations": {"nuc": ["-27694T", "-27695T", "-27696T", "-27697C", "-27698T", "-27699T", "-27700A", "-27701T", "-27702T", "-27703G"]}}}, {"name": "NZL/21CV1275/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8013698630136, "confidence": [2021.8013698630136, 2021.8013698630136]}, "tsne_x": {"value": 20.781126903619995}, "umap_x": {"value": 1.0822611}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.836624}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.14321758669692}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.263967388918942}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -25.83457578081846}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.93389042011242}, "mds3": {"value": 26.508743382747905}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.295351425209226}}, "branch_attrs": {"mutations": {"nuc": ["G15906T", "A16668G"]}}}]}]}]}]}, {"name": "NODE_0001067", "node_attrs": {"div": 39, "num_date": {"value": 2021.6493845261261, "confidence": [2021.5257474768057, 2021.7043954039266]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV2080/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.7767123287672, "confidence": [2021.7767123287672, 2021.7767123287672]}, "tsne_x": {"value": 20.685120025766054}, "umap_x": {"value": 1.7781851}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.618101}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.051163672802471}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.045417022008456}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.97976363637744}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.303525288483922}, "mds3": {"value": 25.860507092323186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.678926551656822}}, "branch_attrs": {"mutations": {"nuc": ["C28744T"]}}}, {"name": "NODE_0000409", "node_attrs": {"div": 41, "num_date": {"value": 2021.6965284051685, "confidence": [2021.6377995986124, 2021.7410958904109]}}, "branch_attrs": {"mutations": {"nuc": ["C9165T", "T18231C"]}}, "children": [{"name": "NZL/21MV3210/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8753424657534, "confidence": [2021.8753424657534, 2021.8753424657534]}, "tsne_x": {"value": 21.0750644105363}, "umap_x": {"value": -0.15638198}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.98999}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.050237712040985}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.784686630371572}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.12275177113932}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.610026708273838}, "mds3": {"value": 28.89943336821403}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.68107213822675}}, "branch_attrs": {"mutations": {"nuc": ["G675T", "C8802T", "A10895G"]}}}, {"name": "NZL/21MV1746/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7410958904109, "confidence": [2021.7410958904109, 2021.7410958904109]}, "tsne_x": {"value": 20.857580112399887}, "umap_x": {"value": 1.4642191}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.701536}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.099469547592519}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.378074379732151}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.37319817745368}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.04681856706503}, "mds3": {"value": 26.85933761681849}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.98661462660514}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001070", "node_attrs": {"div": 41, "num_date": {"value": 2021.727111370912, "confidence": [2021.6307023672784, 2021.76659502773]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV2766/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_x": {"value": 20.91098045307209}, "umap_x": {"value": 1.0612056}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.896368}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.049215660999934}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.50214320143907}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.81484357065522}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.548755612993231}, "mds3": {"value": 28.24080824827304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.679257735905368}}, "branch_attrs": {"mutations": {"nuc": ["G19684T"]}}}, {"name": "NODE_0001072", "node_attrs": {"div": 41, "num_date": {"value": 2021.7381036892723, "confidence": [2021.632070043832, 2021.7729070291866]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001073", "node_attrs": {"div": 41, "num_date": {"value": 2021.795890410959, "confidence": [2021.741634150957, 2021.795890410959]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0273/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8013698630136, "confidence": [2021.8013698630136, 2021.8013698630136]}, "tsne_x": {"value": 20.85009997166153}, "umap_x": {"value": 1.771367}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.673124}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.4388283182977017}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.365390100309387}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.637733321419297}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.614144731310521}, "mds3": {"value": 24.23391332504903}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 13.319677106394549}}, "branch_attrs": {"mutations": {"nuc": ["A21987-", "T21988-", "G21989-", "T21990-", "T21991-", "T21992-"], "S": ["D142X", "V143-", "Y144X"]}, "labels": {"aa": "S: D142X, V143-, Y144X"}}}, {"name": "NZL/21CH0236/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.795890410959, "confidence": [2021.795890410959, 2021.795890410959]}, "tsne_x": {"value": 20.907884181968008}, "umap_x": {"value": 0.88837105}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.850798}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.018597862414852}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.46013116013093}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.91879000771632}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.955475653670242}, "mds3": {"value": 26.55406864726519}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.482377245395863}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001074", "node_attrs": {"div": 41, "num_date": {"value": 2021.7444272821838, "confidence": [2021.6347394079887, 2021.7773921198454]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001075", "node_attrs": {"div": 41, "num_date": {"value": 2021.7540485181814, "confidence": [2021.6355416117176, 2021.8156711059783]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3117/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.8616438356164, "confidence": [2021.8616438356164, 2021.8616438356164]}, "tsne_x": {"value": 21.17190489260273}, "umap_x": {"value": -0.7489336}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.002264}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.050924558565994}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.978682030538735}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -30.54525695655393}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -7.3605319896720225}, "mds3": {"value": 30.626173422921102}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.689734658477288}}, "branch_attrs": {"mutations": {"nuc": ["G204C", "G8939T", "A10829G", "G15372T", "G28936T"]}}}, {"name": "NODE_0001076", "node_attrs": {"div": 41, "num_date": {"value": 2021.7684259665677, "confidence": [2021.636311874721, 2021.8243120967186]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV3142/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8780821917808, "confidence": [2021.8780821917808, 2021.8780821917808]}, "tsne_x": {"value": 21.03405096725416}, "umap_x": {"value": 0.4344149}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.98076}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.048368793593094}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.728444173116705}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.650640034017115}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -7.036408914230475}, "mds3": {"value": 30.940088309452847}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.68046543336602}}, "branch_attrs": {"mutations": {"nuc": ["G3514T", "C15933T", "T27832C"]}}}, {"name": "NODE_0000412", "node_attrs": {"div": 43, "num_date": {"value": 2021.8534093907365, "confidence": [2021.81213307513, 2021.8698630136987]}}, "branch_attrs": {"mutations": {"nuc": ["G23856A", "A28692G"], "S": ["R765H"]}, "labels": {"aa": "S: R765H"}}, "children": [{"name": "NZL/21CH0759/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_x": {"value": 21.06935047571113}, "umap_x": {"value": 0.061456237}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.006638}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.018708622600225}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.778184289784624}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -28.05935864236425}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -7.180120441393379}, "mds3": {"value": 28.96407662167072}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.494091911361863}}, "branch_attrs": {"mutations": {"nuc": ["G10870T"]}}}, {"name": "NZL/21KV0514/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8698630136987, "confidence": [2021.8698630136987, 2021.8698630136987]}, "tsne_x": {"value": 21.03325477712545}, "umap_x": {"value": 0.016725508}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 20.115295}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.100438994403918}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.72301629801704}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -29.36312779095566}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.387257324185307}, "mds3": {"value": 27.7057182578234}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.9971416867007}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001078", "node_attrs": {"div": 41, "num_date": {"value": 2021.760237155569, "confidence": [2021.719794179776, 2021.7823332499502]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV2701/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.831506849315, "confidence": [2021.831506849315, 2021.831506849315]}, "tsne_x": {"value": 20.93361198412904}, "umap_x": {"value": 0.865645}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.870207}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.099146707796416}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.547925654926054}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.264272424632622}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.773517284548281}, "mds3": {"value": 27.4895225851902}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.986829739346517}}, "branch_attrs": {"mutations": {"nuc": ["C27411T"]}}}, {"name": "NODE_0001079", "node_attrs": {"div": 41, "num_date": {"value": 2021.7735213322765, "confidence": [2021.7096400684452, 2021.7904109589042]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV2270/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7904109589042, "confidence": [2021.7904109589042, 2021.7904109589042]}, "tsne_x": {"value": 20.91366451294669}, "umap_x": {"value": 0.9082369}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.870598}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.1230655416456905}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.468607376855998}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.05150527775292}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.958191134519518}, "mds3": {"value": 26.57677948363241}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.147929521572346}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001081", "node_attrs": {"div": 41, "num_date": {"value": 2021.7907940973437, "confidence": [2021.7114191396697, 2021.8013698630136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0276/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8013698630136, "confidence": [2021.8013698630136, 2021.8013698630136]}, "tsne_x": {"value": 20.71903947648758}, "umap_x": {"value": 2.1319113}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.847235}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 16.96050856482838}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.096857814356431}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.6983982097636}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -4.758601014595377}, "mds3": {"value": 23.305168992023745}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 9.087397777144815}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001084", "node_attrs": {"div": 41, "num_date": {"value": 2021.8007623806677, "confidence": [2021.711753876773, 2021.858904109589]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3053/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.858904109589, "confidence": [2021.858904109589, 2021.858904109589]}, "tsne_x": {"value": 20.92062749396416}, "umap_x": {"value": 1.030479}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.832867}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.051322158577316}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.5206676957837}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.791583563655777}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.735203797990372}, "mds3": {"value": 27.94526393584139}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.679677315847076}}, "branch_attrs": {"mutations": {"nuc": ["T16794C"]}}}, {"name": "NODE_0001085", "node_attrs": {"div": 41, "num_date": {"value": 2021.8327161560126, "confidence": [2021.7083484627117, 2021.870503067815]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0767/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_x": {"value": 20.968830654885288}, "umap_x": {"value": 0.7143312}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.938982}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.017729758892765}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.62151750932544}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -24.31469614978948}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.268364161314917}, "mds3": {"value": 29.366142463518248}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 11.483498111840902}}, "branch_attrs": {"mutations": {"nuc": ["G11516A", "G27390T"]}}}, {"name": "NZL/21KV0770/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.9082191780822, "confidence": [2021.9082191780822, 2021.9082191780822]}, "tsne_x": {"value": 21.015539523782337}, "umap_x": {"value": 0.28247103}, "Nextstrain_clade": {"value": "21J (Delta)"}, "umap_y": {"value": 19.947495}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.109741694720405}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "tsne_y": {"value": 15.673769224466252}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -27.607993084168587}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "division": {"value": "New Zealand"}, "mds2": {"value": -6.666841761255635}, "mds3": {"value": 27.931890109165145}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "mds_label_for_Nextstrain_clade": {"value": "2"}, "pca2": {"value": 12.157497096854598}}, "branch_attrs": {"mutations": {"nuc": ["A14457G", "G22899T"], "S": ["G446V"]}, "labels": {"aa": "S: G446V"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001086", "node_attrs": {"div": 4, "num_date": {"value": 2020.0565211191265, "confidence": [2020.0335742321201, 2020.077039808541]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000560", "node_attrs": {"div": 5, "num_date": {"value": 2020.1950946531235, "confidence": [2020.1225943607724, 2020.2199489268648]}}, "branch_attrs": {"mutations": {"nuc": ["G25429T"]}}, "children": [{"name": "OA964978", "node_attrs": {"div": 7, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_x": {"value": -5.066100779988849}, "umap_x": {"value": 7.514875}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.940727}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.007410748703455}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.9639313755383}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.0609358628546532}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 0.6310154627904488}, "mds3": {"value": 0.5230036424875731}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1551878770288327}}, "branch_attrs": {"mutations": {"nuc": ["T516-", "T517-", "A518-", "C1593T", "C7124T"]}}}, {"name": "NODE_0001089", "node_attrs": {"div": 5, "num_date": {"value": 2020.2161155947465, "confidence": [2020.1815052768593, 2020.2609289617487]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC873/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2609289617487, "confidence": [2020.2609289617487, 2020.2609289617487]}, "tsne_x": {"value": -4.787031975265687}, "umap_x": {"value": 7.8485584}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.69765824}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.59369676618859}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.50536500716198}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.659010963899502}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 0.606197904603405}, "mds3": {"value": -0.1129913963136187}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.461268401997222}}, "branch_attrs": {"mutations": {"nuc": ["C26461T"]}}}, {"name": "NODE_0001091", "node_attrs": {"div": 5, "num_date": {"value": 2020.2403896327621, "confidence": [2020.191984563424, 2020.2820595052428]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA977913", "node_attrs": {"div": 9, "num_date": {"value": 2020.4521857923498, "confidence": [2020.4521857923498, 2020.4521857923498]}, "tsne_x": {"value": -5.142445862655815}, "umap_x": {"value": 7.023016}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3030494}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.016281562512222}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.728973981811915}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.5154631600235255}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 1.64205475604416}, "mds3": {"value": -0.0396433828691105}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1477724718326138}}, "branch_attrs": {"mutations": {"nuc": ["G1141T", "C3817T", "G17721T", "C28099T"]}}}, {"name": "FR999017", "node_attrs": {"div": 10, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_x": {"value": -5.182691616795085}, "umap_x": {"value": 6.7887673}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5156353}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.241488652281525}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.588138008530017}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 1.6948673252568651}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 3.795460743870109}, "mds3": {"value": 0.2280080722615659}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8679976313356714}}, "branch_attrs": {"mutations": {"nuc": ["C9977A", "C13694T", "G17443T", "G17608T", "G24197T"], "S": ["A879S"]}, "labels": {"aa": "S: A879S"}}}]}]}]}, {"name": "NODE_0001093", "node_attrs": {"div": 4, "num_date": {"value": 2020.058104586985, "confidence": [2020.038616721838, 2020.0816366252373]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001094", "node_attrs": {"div": 4, "num_date": {"value": 2020.0659014429198, "confidence": [2020.039593805381, 2020.085644648783]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000558", "node_attrs": {"div": 5, "num_date": {"value": 2020.0915300546449, "confidence": [2020.0727228968149, 2020.0915300546449]}}, "branch_attrs": {"mutations": {"nuc": ["C25350T"], "S": ["P1263L"]}, "labels": {"aa": "S: P1263L"}}, "children": [{"name": "OX797381", "node_attrs": {"div": 7, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_x": {"value": -4.889363352077753}, "umap_x": {"value": 7.789642}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.73428905}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.5107808606940035}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.331160010480357}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.532402929739128}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 0.8287426595507152}, "mds3": {"value": -0.1019070593531101}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.163458588070304}}, "branch_attrs": {"mutations": {"nuc": ["G20434T", "C26858T"]}}}, {"name": "OX823017", "node_attrs": {"div": 5, "num_date": {"value": 2020.0915300546449, "confidence": [2020.0915300546449, 2020.0915300546449]}, "tsne_x": {"value": -4.702359483479237}, "umap_x": {"value": 8.162137}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.48527572}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 34.443396893501536}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.738029022051505}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 3.1112555234260246}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 0.3755926782801221}, "mds3": {"value": -0.4398279744539789}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0848015023715724}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000585", "node_attrs": {"div": 5, "num_date": {"value": 2020.1238629315992, "confidence": [2020.0925854051516, 2020.1571038251366]}}, "branch_attrs": {"mutations": {"nuc": ["A26530G"]}}, "children": [{"name": "OY014742", "node_attrs": {"div": 6, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -4.550915519486786}, "umap_x": {"value": 8.135789}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5079787}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 46.73057327263365}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.783759462700624}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.9123437911778427}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": -0.180993519603133}, "mds3": {"value": -0.6134379627585118}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.543462065089062}}, "branch_attrs": {"mutations": {"nuc": ["G28739T"]}}}, {"name": "NODE_0001097", "node_attrs": {"div": 5, "num_date": {"value": 2020.1560466568008, "confidence": [2020.0941375357504, 2020.2254098360656]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper013/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5068306010928, "confidence": [2020.5068306010928, 2020.5068306010928]}, "tsne_x": {"value": -5.9792556119663605}, "umap_x": {"value": 4.637823}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3130188}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.833156430427183}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.222539277707495}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.842592345887781}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Peru"}, "mds2": {"value": 12.950513004596605}, "mds3": {"value": 0.5300583390363339}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.943513308612552}}, "branch_attrs": {"mutations": {"nuc": ["T1147C", "G4657T", "C5907T", "C6813T", "C15277T", "A17429G", "A21917G", "C25872T", "C27881T", "C28651T", "C29675-"], "S": ["I119V"]}, "labels": {"aa": "S: I119V"}}}, {"name": "AUS/VIC530/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_x": {"value": -4.586554745577346}, "umap_x": {"value": 7.5404897}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.94579935}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.1550053762993855}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.829589447885708}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.782342986166544}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": -0.1121269968360132}, "mds3": {"value": -0.4726008922315141}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.004127281968652}}, "branch_attrs": {"mutations": {"nuc": ["C4809T"]}}}]}]}]}, {"name": "NODE_0001098", "node_attrs": {"div": 4, "num_date": {"value": 2020.0650134887808, "confidence": [2020.0380037645816, 2020.1235597107373]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001102", "node_attrs": {"div": 4, "num_date": {"value": 2020.0729798700797, "confidence": [2020.042625001359, 2020.1283566168638]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001103", "node_attrs": {"div": 4, "num_date": {"value": 2020.1080708154907, "confidence": [2020.0387870881875, 2020.1444133837692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ZAF/R03006/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.181693989071, "confidence": [2020.181693989071, 2020.181693989071]}, "tsne_x": {"value": -4.700196878353083}, "umap_x": {"value": 7.478118}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0278398}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.941546364911304}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.714572625408662}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.923635181324549}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "KwaZulu-Natal"}, "mds2": {"value": 0.5511436343983781}, "mds3": {"value": -0.2567495583101041}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.954534128805285}}, "branch_attrs": {"mutations": {"nuc": ["C13620T", "C21595T"]}}}, {"name": "NODE_0001105", "node_attrs": {"div": 4, "num_date": {"value": 2020.1516393442623, "confidence": [2020.115635930408, 2020.1516393442623]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX761651", "node_attrs": {"div": 4, "num_date": {"value": 2020.1516393442623, "confidence": [2020.1516393442623, 2020.1516393442623]}, "tsne_x": {"value": -4.764033424766073}, "umap_x": {"value": 8.180291}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.46944377}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.452443776619722}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.737025162942448}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.2053922952912783}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 0.562591372147593}, "mds3": {"value": -0.414730023024979}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.792151315957945}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001106", "node_attrs": {"div": 4, "num_date": {"value": 2020.1814950722048, "confidence": [2020.1371742087063, 2020.2094763644745]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001107", "node_attrs": {"div": 4, "num_date": {"value": 2020.2006305199805, "confidence": [2020.1637252094672, 2020.2285263490837]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA971640", "node_attrs": {"div": 7, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2554644808743, 2020.2554644808743]}, "tsne_x": {"value": -4.554345593708602}, "umap_x": {"value": 7.6253057}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.87798}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.018683797038523}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.236732418442188}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.520984716169773}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 0.719898524441663}, "mds3": {"value": -0.1727455822660503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1394200607858324}}, "branch_attrs": {"mutations": {"nuc": ["C23575T", "G23587C", "C29741T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}, {"name": "NGA/CV164/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2718579234972, "confidence": [2020.2718579234972, 2020.2718579234972]}, "tsne_x": {"value": -4.7309200683015735}, "umap_x": {"value": 7.7449207}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.7738394}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.266353483932655}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.737946655925963}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.880834182455556}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": 0.3695747535066727}, "mds3": {"value": -0.4091620247847718}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.139866462291016}}, "branch_attrs": {"mutations": {"nuc": ["G24197A"], "S": ["A879T"]}, "labels": {"aa": "S: A879T"}}}]}, {"name": "NODE_0001108", "node_attrs": {"div": 4, "num_date": {"value": 2020.1950901715993, "confidence": [2020.165383269014, 2020.2136269663072]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "FR998656", "node_attrs": {"div": 6, "num_date": {"value": 2020.2909836065573, "confidence": [2020.2909836065573, 2020.2909836065573]}, "tsne_x": {"value": -4.752235595883124}, "umap_x": {"value": 8.157549}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.4917314}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.1802600357231204}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.729454803711148}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.78388695871581}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": -0.5625442203700131}, "mds3": {"value": -0.5510032369207001}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.2126533135136235}}, "branch_attrs": {"mutations": {"nuc": ["C20762T", "C26936T"]}}}, {"name": "NODE_0001109", "node_attrs": {"div": 4, "num_date": {"value": 2020.2028947256888, "confidence": [2020.185402161255, 2020.2185124046107]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C26/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_x": {"value": -4.862634906491859}, "umap_x": {"value": 8.173276}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.4884684}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.259641965513708}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.720351176142522}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 2.7032901422391147}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": -0.6094358338535749}, "mds3": {"value": -0.4864232734204588}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 24.0262313514726}}, "branch_attrs": {"mutations": {"nuc": ["G17523T"]}}}, {"name": "NODE_0000540", "node_attrs": {"div": 5, "num_date": {"value": 2020.2634572225518, "confidence": [2020.2155428552787, 2020.2718579234972]}}, "branch_attrs": {"mutations": {"nuc": ["A24862G"]}}, "children": [{"name": "USA/CA-CZB-2081/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_x": {"value": -5.543020763464623}, "umap_x": {"value": 7.0272307}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.3510857}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.7938608173284925}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.34448047830374}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.40474258004029}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": 2.459403771263772}, "mds3": {"value": 0.3085980792112375}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.316325471426945}}, "branch_attrs": {"mutations": {"nuc": ["C8327T", "C24442T", "C27549T"]}}}, {"name": "NGA/CV370/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2718579234972, "confidence": [2020.2718579234972, 2020.2718579234972]}, "tsne_x": {"value": -4.770315993467705}, "umap_x": {"value": 8.133148}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.50009096}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.06003520488903}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.729652572999385}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.167253464422651}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": 0.5499299445725535}, "mds3": {"value": -0.2913043435754612}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.349908547955378}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}, {"name": "NODE_0001112", "node_attrs": {"div": 4, "num_date": {"value": 2020.107710540145, "confidence": [2020.037119681215, 2020.1299212308286]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/944743/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2226775956285, "confidence": [2020.2226775956285, 2020.2226775956285]}, "tsne_x": {"value": -4.738238970959344}, "umap_x": {"value": 8.017693}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5909319}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0170402841984245}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.745015360061007}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.464792653276361}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Iowa"}, "mds2": {"value": 0.5489017512660789}, "mds3": {"value": -0.2751519355009427}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1538993510391914}}, "branch_attrs": {"mutations": {"nuc": ["C16830T"]}}}, {"name": "NODE_0001113", "node_attrs": {"div": 4, "num_date": {"value": 2020.1083287817494, "confidence": [2020.0419337864373, 2020.1313194201587]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001114", "node_attrs": {"div": 5, "num_date": {"value": 2020.1957134068275, "confidence": [2020.1546577135173, 2020.214480874317]}}, "branch_attrs": {"mutations": {"nuc": ["A29869T"]}}, "children": [{"name": "USA/UT-00031/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.214480874317, "confidence": [2020.214480874317, 2020.214480874317]}, "tsne_x": {"value": -4.852426412780416}, "umap_x": {"value": 8.013757}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.59486413}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 23.53216608811733}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.61958993606762}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 3.286837942255423}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Utah"}, "mds2": {"value": 0.5995314761520318}, "mds3": {"value": -0.3145832846012547}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -13.690031375270031}}, "branch_attrs": {"mutations": {"nuc": ["T516-", "T517-", "A518-"]}}}, {"name": "NODE_0001116", "node_attrs": {"div": 5, "num_date": {"value": 2020.2003784557148, "confidence": [2020.175347127311, 2020.2208742726866]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR1895/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_x": {"value": -4.750161523209117}, "umap_x": {"value": 7.625229}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.91260505}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.033118385585804}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.55828210879493}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.914263417314616}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.7671347811823843}, "mds3": {"value": -0.1512820370011978}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.2711349594185814}}, "branch_attrs": {"mutations": {"nuc": ["C6723T", "T26094C"]}}}, {"name": "NODE_0000579", "node_attrs": {"div": 6, "num_date": {"value": 2020.23087431694, "confidence": [2020.212540032272, 2020.23087431694]}}, "branch_attrs": {"mutations": {"nuc": ["C2189T"]}}, "children": [{"name": "NZL/20VR2525/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.23087431694, "confidence": [2020.23087431694, 2020.23087431694]}, "tsne_x": {"value": -4.663245006788537}, "umap_x": {"value": 7.747521}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.7741725}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.60315475009655}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.779719619191736}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.6291097991225785}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.5760768782213538}, "mds3": {"value": -0.3137032033149953}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.425020028836818}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20VR2929/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.3510928961748, "confidence": [2020.3510928961748, 2020.3510928961748]}, "tsne_x": {"value": -4.612789788159214}, "umap_x": {"value": 7.946035}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.63163495}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.49231237634713}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.781725900760724}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.9243503804413806}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.5974924158227211}, "mds3": {"value": -0.2682492024317733}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.406965325510436}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001118", "node_attrs": {"div": 4, "num_date": {"value": 2020.1241394551475, "confidence": [2020.0422156876232, 2020.1356762982334]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000543", "node_attrs": {"div": 5, "num_date": {"value": 2020.1489071038252, "confidence": [2020.1272106906054, 2020.1489071038252]}}, "branch_attrs": {"mutations": {"nuc": ["A187G"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0087/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2609289617487, "confidence": [2020.2609289617487, 2020.2609289617487]}, "tsne_x": {"value": -4.74324912538998}, "umap_x": {"value": 8.046351}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5658901}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.879466192973553}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.759437553043648}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.583712670384567}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.5615062972411379}, "mds3": {"value": -0.3000441723543185}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.028024874468468}}, "branch_attrs": {"mutations": {}}}, {"name": "Switzerland/TI-SNRCI-29919486/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1489071038252, "confidence": [2020.1489071038252, 2020.1489071038252]}, "tsne_x": {"value": -4.756262477591534}, "umap_x": {"value": 8.138516}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5014528}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.598303561773885}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.759056125899225}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.112365286055564}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Ticino"}, "mds2": {"value": 0.599811469513739}, "mds3": {"value": -0.3672074111406024}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.13687086898952}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000479", "node_attrs": {"div": 5, "num_date": {"value": 2020.1339073385836, "confidence": [2020.098828602855, 2020.1571038251366]}}, "branch_attrs": {"mutations": {"nuc": ["A20268G"]}}, "children": [{"name": "USA/NE-10732/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4139344262296, "confidence": [2020.4139344262296, 2020.4139344262296]}, "tsne_x": {"value": -4.7327164912623285}, "umap_x": {"value": 5.7194138}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9030236}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.194509185100785}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.09048793199328}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.541057258194362}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nebraska"}, "mds2": {"value": -0.2619523464178696}, "mds3": {"value": 5.707015756829813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.6792593603157813}}, "branch_attrs": {"mutations": {"nuc": ["G2447A", "C6573T", "C7420T", "T24716C", "C25452T", "T25612C", "C29555T"], "S": ["F1052L"]}, "labels": {"aa": "S: F1052L"}}}, {"name": "CHL/Santiago-PUC_MVL_0068/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.23087431694, "confidence": [2020.23087431694, 2020.23087431694]}, "tsne_x": {"value": -4.939590291926435}, "umap_x": {"value": 6.875634}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.4673635}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.933334583229325}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.848479791212245}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.630541240328732}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 3.061167012762952}, "mds3": {"value": 0.4859779205100786}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.034799174576811}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "G2305T", "G11083T", "C27128T"]}}}, {"name": "USA/RI-CDC-03063123-001/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_x": {"value": -5.352621211840405}, "umap_x": {"value": 7.423428}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0581992}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.840951949966024}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.38187125918336}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.875156364129829}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Rhode Island"}, "mds2": {"value": 1.2841109679638605}, "mds3": {"value": 0.1440922560149257}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -15.676413164850391}}, "branch_attrs": {"mutations": {"nuc": ["C3369T", "C6190T"]}}}, {"name": "Switzerland/GE-SNRCI-29943121/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -5.1472936892632974}, "umap_x": {"value": 7.8073106}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.7299611}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.574316917813449}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.188054221657815}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.588892197008151}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Geneva"}, "mds2": {"value": 0.6344775538450332}, "mds3": {"value": -0.2833863327980898}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -13.934297279498772}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000967", "node_attrs": {"div": 5, "num_date": {"value": 2020.1566484313337, "confidence": [2020.1129569381253, 2020.2013723822695]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000485", "node_attrs": {"div": 6, "num_date": {"value": 2020.2006505100478, "confidence": [2020.1738163374396, 2020.2310180927568]}}, "branch_attrs": {"mutations": {"nuc": ["A10323G"]}}, "children": [{"name": "USA/UT-CDC-4115024-001/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.7773224043715, "confidence": [2020.7773224043715, 2020.7773224043715]}, "tsne_x": {"value": -5.825451989274201}, "umap_x": {"value": 2.396658}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4524443}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.892332940156637}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.561"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.82087744917637}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.404211161765186}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -21.60174089095479}, "mds3": {"value": 2.617247582441248}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.11691417697378}}, "branch_attrs": {"mutations": {"nuc": ["C2023T", "G2516T", "C4543T", "G4678T", "A5999G", "C7851T", "C10798T", "C11866T", "C18693T", "G21974T", "T23036C", "T25577C", "G27827T", "C28472T", "C28854T", "T28921C", "G28975T"], "S": ["D138Y"]}, "labels": {"aa": "S: D138Y"}}}, {"name": "NODE_0001123", "node_attrs": {"div": 6, "num_date": {"value": 2020.2241924107927, "confidence": [2020.19848002722, 2020.2319902795944]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Iceland/695/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2418032786886, "confidence": [2020.2418032786886, 2020.2418032786886]}, "tsne_x": {"value": -5.222406832647396}, "umap_x": {"value": 7.6093073}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.9023924}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.593594127398495}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.30952751264412}, "country": {"value": "Iceland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.050288247632997}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Iceland"}, "mds2": {"value": 0.584691284935049}, "mds3": {"value": -0.070309239050465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.88838213323769}}, "branch_attrs": {"mutations": {}}}, {"name": "Iceland/1476/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_x": {"value": -5.307776654006026}, "umap_x": {"value": 7.608953}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.87838966}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.593342721458822}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.388662427634227}, "country": {"value": "Iceland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.762842127762305}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Iceland"}, "mds2": {"value": 0.7576158084565796}, "mds3": {"value": 0.2871980151717878}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.886799434221713}}, "branch_attrs": {"mutations": {"nuc": ["G26951T"]}}}]}]}, {"name": "NODE_0001124", "node_attrs": {"div": 5, "num_date": {"value": 2020.1853995426495, "confidence": [2020.1555826114575, 2020.206869407007]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001125", "node_attrs": {"div": 5, "num_date": {"value": 2020.2090163934427, "confidence": [2020.1879497097257, 2020.2090163934427]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0013/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.214480874317, "confidence": [2020.214480874317, 2020.214480874317]}, "tsne_x": {"value": -5.129893971939906}, "umap_x": {"value": 7.7448373}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.7766445}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.858955005011039}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.162758412266186}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.801771829129444}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.6018552118168318}, "mds3": {"value": -0.3211724298187513}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.593966460485415}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-op9d0/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2090163934427, "confidence": [2020.2090163934427, 2020.2090163934427]}, "tsne_x": {"value": -5.142821012294283}, "umap_x": {"value": 7.916402}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.65542156}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.860815195175172}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.16862350918487}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.201709876705781}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.709347811931131}, "mds3": {"value": -0.2594116366636942}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.546619460460112}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001126", "node_attrs": {"div": 5, "num_date": {"value": 2020.2003543524481, "confidence": [2020.1790324846886, 2020.2101244004823]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001127", "node_attrs": {"div": 5, "num_date": {"value": 2020.217213114754, "confidence": [2020.1980676876074, 2020.217213114754]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0086/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_x": {"value": -5.142179716078139}, "umap_x": {"value": 7.877759}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.67739546}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.935023756552864}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.16780249405484}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.285021595418664}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.6707649227108818}, "mds3": {"value": -0.2609305986514193}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.154450859839518}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-op9d3/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_x": {"value": -5.128310311705067}, "umap_x": {"value": 7.774774}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.7397047}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.330668060594915}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.158538238117988}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.792604407886059}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.6377821859228967}, "mds3": {"value": -0.3507750916271407}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 14.928282334598984}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001128", "node_attrs": {"div": 5, "num_date": {"value": 2020.2103156729274, "confidence": [2020.193374858163, 2020.2117486338798]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR0760/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_x": {"value": -5.149954986910884}, "umap_x": {"value": 8.17067}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.47134006}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.009212837664308}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.17676096257231}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.2587175625480804}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.5999516909427549}, "mds3": {"value": -0.2638499919392418}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1528192909313197}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001132", "node_attrs": {"div": 5, "num_date": {"value": 2020.2146579864714, "confidence": [2020.1940025627516, 2020.25336557339]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-TMM2937/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.3101092896175, "confidence": [2020.3101092896175, 2020.3101092896175]}, "tsne_x": {"value": -5.243994915744044}, "umap_x": {"value": 7.616537}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.8904416}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.86041104011724}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.274598868013364}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.486850811879461}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.7306677556683504}, "mds3": {"value": -0.1699935575705197}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.59403716520155}}, "branch_attrs": {"mutations": {"nuc": ["C6196A"]}}}, {"name": "NODE_0001133", "node_attrs": {"div": 5, "num_date": {"value": 2020.2196806920201, "confidence": [2020.1976259030002, 2020.2579242357483]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001135", "node_attrs": {"div": 5, "num_date": {"value": 2020.240618851713, "confidence": [2020.1932056560033, 2020.2672088357865]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000503", "node_attrs": {"div": 13, "num_date": {"value": 2020.410547341021, "confidence": [2020.3721247557107, 2020.41803461309]}}, "branch_attrs": {"mutations": {"nuc": ["C3261T", "C9711T", "C17012T", "C21304A", "G21305A", "G26152T", "C27304T", "G29703T"]}}, "children": [{"name": "ARG/Cordoba-1006-155/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_x": {"value": -6.863263110095051}, "umap_x": {"value": 5.193098}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1058452}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.902195249081769}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.93461102774896}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.779631773484878}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": -8.809788931087256}, "mds3": {"value": -1.2063864900354515}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.633635403034129}}, "branch_attrs": {"mutations": {}}}, {"name": "ARG/Cordoba-11301-61/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_x": {"value": -6.860886292998177}, "umap_x": {"value": 5.408198}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.9927351}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.94438226147166}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.93545308766568}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.830657590295781}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": 9.065647593985652}, "mds3": {"value": 0.7102657643548924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.911428671019918}}, "branch_attrs": {"mutations": {}}}, {"name": "ARG/Cordoba-441-200/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_x": {"value": -6.873304059124228}, "umap_x": {"value": 4.621311}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3797586}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.363462768472268}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.95169744368093}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.495362801450696}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": -0.2743968185733585}, "mds3": {"value": 0.1956766421421964}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 14.94219037872106}}, "branch_attrs": {"mutations": {"nuc": ["G4657C", "A14328C"]}}}, {"name": "ARG/Cordoba-1083-6/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_x": {"value": -6.868587357778087}, "umap_x": {"value": 4.9938765}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.206241}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.971351518162002}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.943535165429108}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.60016510154124}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": -10.628520085311816}, "mds3": {"value": -1.3482952961651564}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.070047847819907}}, "branch_attrs": {"mutations": {"nuc": ["G26909C"]}}}, {"name": "NODE_0001137", "node_attrs": {"div": 13, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4020338316852, 2020.4248633879781]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARG/Cordoba-16232-61/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_x": {"value": -6.863021048946889}, "umap_x": {"value": 5.135082}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1590903}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.824609190532518}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.93262813678828}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.034162720631356}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": 8.911179581257343}, "mds3": {"value": 1.0162042838425007}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.212407387738804}}, "branch_attrs": {"mutations": {}}}, {"name": "ARG/Cordoba-16231-61/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_x": {"value": -6.862814962308984}, "umap_x": {"value": 5.267766}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0696776}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.867844077730951}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -18.93412205080333}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.407928547268017}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Argentina"}, "mds2": {"value": 9.07167751936742}, "mds3": {"value": 1.0528335603293888}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.464712630359898}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001138", "node_attrs": {"div": 5, "num_date": {"value": 2020.258389652095, "confidence": [2020.1885263109307, 2020.315156364966]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001139", "node_attrs": {"div": 5, "num_date": {"value": 2020.2920040329516, "confidence": [2020.1851169792765, 2020.319105963574]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0392/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -5.572547133287808}, "umap_x": {"value": 7.307004}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1392529}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.95588507894773}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.314639064473077}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.737891242672037}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 1.2253506505218734}, "mds3": {"value": 0.8462497510633271}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.094596046832775}}, "branch_attrs": {"mutations": {"nuc": ["G1535A", "C1912T", "T28251G"]}}}, {"name": "NODE_0001140", "node_attrs": {"div": 5, "num_date": {"value": 2020.3210382513662, "confidence": [2020.2914699637656, 2020.3210382513662]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0221/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.3210382513662, "confidence": [2020.3210382513662, 2020.3210382513662]}, "tsne_x": {"value": -5.169595857091203}, "umap_x": {"value": 8.135343}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.49114048}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.421912926878414}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.16023834869161}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.3381844211756446}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.6311708388560726}, "mds3": {"value": -0.2859539975329386}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.764850236558535}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Puerto_Montt-PUC_MVL_0246/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_x": {"value": -5.146658860105752}, "umap_x": {"value": 7.929927}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.63684344}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.133197024793229}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.163996974258662}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.277563949728291}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Chile"}, "mds2": {"value": 0.6636637797018017}, "mds3": {"value": -0.259427700186146}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 13.472457271897778}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001141", "node_attrs": {"div": 5, "num_date": {"value": 2020.3221824559307, "confidence": [2020.1750513296902, 2020.4039028945692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper003/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4986338797814, "confidence": [2020.4986338797814, 2020.4986338797814]}, "tsne_x": {"value": -6.185313430054052}, "umap_x": {"value": 5.9444003}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8741826}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.868769353897875}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.889557094552792}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.554065494188028}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Peru"}, "mds2": {"value": 5.131727248407572}, "mds3": {"value": 3.4142341007948294}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.78256132614647}}, "branch_attrs": {"mutations": {"nuc": ["A3528C", "C4586T", "C8320T", "C8986T", "C12781T", "G26589T", "C29675-"]}}}, {"name": "NODE_0001143", "node_attrs": {"div": 5, "num_date": {"value": 2020.3588583513674, "confidence": [2020.1783234060802, 2020.4651667151377]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA982226", "node_attrs": {"div": 13, "num_date": {"value": 2020.6926229508197, "confidence": [2020.6926229508197, 2020.6926229508197]}, "tsne_x": {"value": -6.445687734308686}, "umap_x": {"value": 5.417783}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0106063}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.992834227216466}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.416.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.751946580444294}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.3347873968153426}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": -6.9996364870480825}, "mds3": {"value": -1.814449130855965}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1437028191695533}}, "branch_attrs": {"mutations": {"nuc": ["C2706T", "C4084T", "G18090A", "G24124T", "C25731T", "C27600T", "C28312T", "C28833T"], "S": ["K854N"]}, "labels": {"aa": "S: K854N"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-1860/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.6953551912568, "confidence": [2020.6953551912568, 2020.6953551912568]}, "tsne_x": {"value": -4.860824999247179}, "umap_x": {"value": 6.5118213}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6270273}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.66316807530008}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.94245551721726}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 4.819439213416475}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": 4.556534631740321}, "mds3": {"value": 1.8616083012093327}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.875611923976134}}, "branch_attrs": {"mutations": {"nuc": ["G376T", "C1441T", "G18859T", "A27949C", "C28253T"]}}}]}]}]}]}, {"name": "NODE_0001144", "node_attrs": {"div": 5, "num_date": {"value": 2020.2325892648962, "confidence": [2020.19680746924, 2020.2598166916866]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000500", "node_attrs": {"div": 10, "num_date": {"value": 2020.3615544080862, "confidence": [2020.288014360844, 2020.4709052528538]}}, "branch_attrs": {"mutations": {"nuc": ["T7767C", "C8047T", "C17104T", "C22879A", "G29734C"], "S": ["N439K"]}, "labels": {"aa": "S: N439K"}}, "children": [{"name": "OA983144", "node_attrs": {"div": 20, "num_date": {"value": 2020.6926229508197, "confidence": [2020.6926229508197, 2020.6926229508197]}, "tsne_x": {"value": -6.726642469027999}, "umap_x": {"value": 3.1256073}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6067681}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.01337192114057}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.258.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.263090861136412}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.71492734314911}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": -20.20446004508}, "mds3": {"value": -0.3105399908297508}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1363423185448284}}, "branch_attrs": {"mutations": {"nuc": ["G1464A", "G9856T", "A10978T", "C16469T", "G18803T", "T20799C", "C21635T", "G25320T", "G25785T", "A26664G"], "S": ["P25S", "C1253F"]}, "labels": {"aa": "S: P25S, C1253F"}}}, {"name": "NODE_0000501", "node_attrs": {"div": 16, "num_date": {"value": 2020.5897934106279, "confidence": [2020.5322370046742, 2020.635767893703]}}, "branch_attrs": {"mutations": {"nuc": ["G12988T", "G15598A", "G18028T", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "T24910C", "T26972C", "C27800A"], "S": ["I68X", "H69-", "V70X", "*1274X"]}, "labels": {"aa": "S: I68X, H69-, V70X, *1274X"}}, "children": [{"name": "OA974497", "node_attrs": {"div": 19, "num_date": {"value": 2020.646174863388, "confidence": [2020.646174863388, 2020.646174863388]}, "tsne_x": {"value": -7.411795767623067}, "umap_x": {"value": 3.6752207}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4679098}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.828433189080935}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.258"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.66980296331496}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.6196572979311}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 18.87543960260409}, "mds3": {"value": 0.5776973698314157}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 4.097600755141607}}, "branch_attrs": {"mutations": {"nuc": ["T17556C", "C21365T", "G25494T"]}}}, {"name": "OA974445", "node_attrs": {"div": 16, "num_date": {"value": 2020.6489071038252, "confidence": [2020.6489071038252, 2020.6489071038252]}, "tsne_x": {"value": -7.386102855900699}, "umap_x": {"value": 4.3815694}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.323632}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.78889190945584}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.258"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.655368431588503}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.7062941380419887}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": -13.734340182318537}, "mds3": {"value": -4.6918039813383485}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 1.43561746418704}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001147", "node_attrs": {"div": 5, "num_date": {"value": 2020.241328700052, "confidence": [2020.1983378484845, 2020.264580079417]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MEX/11712/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_x": {"value": -5.235848129681515}, "umap_x": {"value": 7.631104}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.9027646}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.708252752969471}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.609"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.26768563260395}, "country": {"value": "Mexico"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.263454409631656}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Mexico"}, "mds2": {"value": 0.7483479712480179}, "mds3": {"value": -0.1047600503270986}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.993222964282085}}, "branch_attrs": {"mutations": {"nuc": ["C4582T"]}}}, {"name": "NODE_0000508", "node_attrs": {"div": 6, "num_date": {"value": 2020.265982569793, "confidence": [2020.2209713692785, 2020.3098636475086]}}, "branch_attrs": {"mutations": {"nuc": ["C28854T"]}}, "children": [{"name": "USA/SEARCH-1154-SAN/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3210382513662, "confidence": [2020.3210382513662, 2020.3210382513662]}, "tsne_x": {"value": -5.691915002787419}, "umap_x": {"value": 7.1895494}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2574829}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.899043203862528}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.82829957461585}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.754538113787519}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": 0.7737719749256624}, "mds3": {"value": 1.9797038580617297}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 31.507511723738315}}, "branch_attrs": {"mutations": {"nuc": ["C5171T", "G21867T", "C27903T"], "S": ["R102I"]}, "labels": {"aa": "S: R102I"}}}, {"name": "NODE_0001149", "node_attrs": {"div": 6, "num_date": {"value": 2020.3231037525477, "confidence": [2020.1787970042203, 2020.357809313566]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5895/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3975409836066, "confidence": [2020.3975409836066, 2020.3975409836066]}, "tsne_x": {"value": -5.6738062181026025}, "umap_x": {"value": 6.860086}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.4521703}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.754560027453267}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.875377049211544}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.14625030179655}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": 3.394260275020325}, "mds3": {"value": 0.7102366054631807}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.644623870269094}}, "branch_attrs": {"mutations": {"nuc": ["C13667T", "G24047T", "G26144A"], "S": ["A829S"]}, "labels": {"aa": "S: A829S"}}}, {"name": "NODE_0001150", "node_attrs": {"div": 6, "num_date": {"value": 2020.360657305816, "confidence": [2020.2330781061587, 2020.4725199314942]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000515", "node_attrs": {"div": 7, "num_date": {"value": 2020.419397391467, "confidence": [2020.2737745073487, 2020.5888206548836]}}, "branch_attrs": {"mutations": {"nuc": ["G2164C"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-2134/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_x": {"value": -6.011544637742037}, "umap_x": {"value": 5.794161}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.874931}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.332004627719136}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.739337748464916}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.42743416964706}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": 5.075378417210084}, "mds3": {"value": 0.310142576681383}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.320356536330079}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "C3622T", "C21595T", "G28655T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-3461/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7418032786886, "confidence": [2020.7418032786886, 2020.7418032786886]}, "tsne_x": {"value": -6.267625155962119}, "umap_x": {"value": 3.3119605}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6419108}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.317887538865656}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.26864813195931}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.506228345955552}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": -10.171669613245545}, "mds3": {"value": 2.590192874472995}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.443447294676723}}, "branch_attrs": {"mutations": {"nuc": ["G174T", "C1205A", "C6638T", "C11455T", "C12115T", "C12439T", "C14422T", "C15480T", "G18651A", "G23587C", "C29367T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}]}, {"name": "NODE_0001153", "node_attrs": {"div": 6, "num_date": {"value": 2020.410995487371, "confidence": [2020.2687534903034, 2020.4810007701562]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000516", "node_attrs": {"div": 7, "num_date": {"value": 2020.5313478665612, "confidence": [2020.299799256814, 2020.6729509441213]}}, "branch_attrs": {"mutations": {"nuc": ["T24076C"]}}, "children": [{"name": "USA/TG909660/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7718579234972, "confidence": [2020.7718579234972, 2020.7718579234972]}, "tsne_x": {"value": -5.662042821059374}, "umap_x": {"value": 5.077328}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1701598}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.562656391989513}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.584396591957606}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.243086409370026}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 7.822941667293032}, "mds3": {"value": 1.4664740344173313}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 5.1468605220930135}}, "branch_attrs": {"mutations": {"nuc": ["G3338T", "C4927T", "C8293T", "C12616T", "A14388G", "A25136C"], "S": ["N1192H"]}, "labels": {"aa": "S: N1192H"}}}, {"name": "NODE_0001156", "node_attrs": {"div": 7, "num_date": {"value": 2020.5719522452948, "confidence": [2020.3045242510655, 2020.6831011558645]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2010204064/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.7882513661202, "confidence": [2020.7882513661202, 2020.7882513661202]}, "tsne_x": {"value": -5.722529987963168}, "umap_x": {"value": 5.5787063}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0099354}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.6483308136864365}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.27185683118402}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.084573234130761}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -7.411316684735915}, "mds3": {"value": -1.321690070129357}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.9626741135970605}}, "branch_attrs": {"mutations": {"nuc": ["C6539T", "T7534C", "G25062T", "G25654T", "C28311T"], "S": ["G1167V"]}, "labels": {"aa": "S: G1167V"}}}, {"name": "NODE_0001157", "node_attrs": {"div": 7, "num_date": {"value": 2020.588315515378, "confidence": [2020.3096444750104, 2020.7094434178405]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-25516/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.045205479452, "confidence": [2021.045205479452, 2021.045205479452]}, "tsne_x": {"value": -5.170517725849973}, "umap_x": {"value": 2.7278922}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5494993}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.717055239336461}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.63934590030423}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.859044166760125}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": -16.817024743995177}, "mds3": {"value": 1.9413893415737224}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.493678583043855}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "C936T", "A1430G", "C3583T", "C9520T", "C17862T", "C20759T", "C20987T", "G25647T", "G26660A", "C28087T", "G29260T", "A29664G"]}}}, {"name": "USA/AZ-ASU19017/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.0506849315068, "confidence": [2021.0506849315068, 2021.0506849315068]}, "tsne_x": {"value": -5.378637937984235}, "umap_x": {"value": 4.059749}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4829392}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.285588534502478}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.831420273472744}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.35478713134446}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 15.735901477784784}, "mds3": {"value": 1.3304262440987389}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.7786895035161576}}, "branch_attrs": {"mutations": {"nuc": ["G806A", "C1063T", "G2036A", "C6449T", "G11243A", "G12769T", "G25855T", "C27494T", "A28097G", "G29543T"]}}}]}]}]}, {"name": "NODE_0001160", "node_attrs": {"div": 6, "num_date": {"value": 2020.4239637403543, "confidence": [2020.2756447844693, 2020.4820973047295]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000513", "node_attrs": {"div": 7, "num_date": {"value": 2020.4802874082914, "confidence": [2020.3307120792417, 2020.587887600479]}}, "branch_attrs": {"mutations": {"nuc": ["C23604A"], "S": ["P681H"]}, "labels": {"aa": "S: P681H"}}, "children": [{"name": "USA/TG770076/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.8483606557377, "confidence": [2020.8483606557377, 2020.8483606557377]}, "tsne_x": {"value": -5.172484127897064}, "umap_x": {"value": 7.2811522}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.1100005}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 53.022980973565865}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.339636363466184}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 0.3522640771707124}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": -0.2300869751662786}, "mds3": {"value": 1.1980890878256318}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.03785352329624}}, "branch_attrs": {"mutations": {"nuc": ["T24076C", "A24774T", "G29266A", "T29710C"], "S": ["Q1071L"]}, "labels": {"aa": "S: Q1071L"}}}, {"name": "USA/UT-UPHL-201109604/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7800546448088, "confidence": [2020.7800546448088, 2020.7800546448088]}, "tsne_x": {"value": -6.202118611797857}, "umap_x": {"value": 3.7260695}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.513347}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 41.88902153473339}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.400"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.192591436401262}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.79935998747794}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Utah"}, "mds2": {"value": -17.662852682770055}, "mds3": {"value": 0.9333197144899036}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -11.308453582059729}}, "branch_attrs": {"mutations": {"nuc": ["G1181T", "C4246T", "C6471T", "C10341T", "G11939A", "C15960T", "C17999T", "G19969A", "C22591T", "C25714T", "C26801T", "C29095T"]}}}]}, {"name": "NODE_0001162", "node_attrs": {"div": 6, "num_date": {"value": 2020.4684033937945, "confidence": [2020.2743054768073, 2020.4822404371585]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG491709/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_x": {"value": -5.213284009210722}, "umap_x": {"value": 8.072744}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.54108155}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 28.608348510934256}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.357564025018323}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 3.90722899998256}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 0.5215823925117378}, "mds3": {"value": 0.3350506989288074}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 19.24794991534}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001163", "node_attrs": {"div": 6, "num_date": {"value": 2020.4794637611815, "confidence": [2020.2689066865732, 2020.578703308807]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000525", "node_attrs": {"div": 8, "num_date": {"value": 2020.5858834392695, "confidence": [2020.473420750223, 2020.684338055933]}}, "branch_attrs": {"mutations": {"nuc": ["C355T", "C4093T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1874/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.6871584699454, "confidence": [2020.6871584699454, 2020.6871584699454]}, "tsne_x": {"value": -5.903517143254646}, "umap_x": {"value": 6.445741}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6657206}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.100174880655851}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.381"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.932615081499176}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.049009059078076}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": 3.523646198531226}, "mds3": {"value": 2.771943342297813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.432961539255867}}, "branch_attrs": {"mutations": {"nuc": ["G210T", "C22214G"], "S": ["Q218E"]}, "labels": {"aa": "S: Q218E"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-0607/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.799180327869, "confidence": [2020.799180327869, 2020.799180327869]}, "tsne_x": {"value": -6.197799694953052}, "umap_x": {"value": 4.9954243}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.172748}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.688583771660268}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.381"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.057699364917752}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.680024248895128}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": 8.711389879181562}, "mds3": {"value": 1.2459840623844116}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.208396901413496}}, "branch_attrs": {"mutations": {"nuc": ["C10626T", "G12202T", "T20911C", "G26690T", "G26828T"]}}}]}, {"name": "NODE_0001168", "node_attrs": {"div": 6, "num_date": {"value": 2020.481938946, "confidence": [2020.2716230219173, 2020.581485547071]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1615/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.6188524590164, "confidence": [2020.6188524590164, 2020.6188524590164]}, "tsne_x": {"value": -5.805397929853537}, "umap_x": {"value": 6.137144}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.8441979}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.787044894365048}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.810872147602428}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.59333939819656}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": 4.598264025919304}, "mds3": {"value": 0.6379334597731938}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.782615952621936}}, "branch_attrs": {"mutations": {"nuc": ["A4308G", "C10623T", "A26528T", "G29703A"]}}}, {"name": "NODE_0001169", "node_attrs": {"div": 6, "num_date": {"value": 2020.49022277708, "confidence": [2020.2722509719865, 2020.5829469529992]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2008182374/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.629781420765, "confidence": [2020.629781420765, 2020.629781420765]}, "tsne_x": {"value": -5.886987697681573}, "umap_x": {"value": 6.1900926}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7618314}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.862487131560592}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.904525375092348}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.229609165395005}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -0.7688501361980621}, "mds3": {"value": 3.2150005235624017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.867383689820435}}, "branch_attrs": {"mutations": {"nuc": ["G4399T", "C13862T", "A14291G", "C17883T", "G24959T"], "S": ["V1133F"]}, "labels": {"aa": "S: V1133F"}}}, {"name": "NODE_0001170", "node_attrs": {"div": 6, "num_date": {"value": 2020.506865822876, "confidence": [2020.247477007127, 2020.625741181204]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000532", "node_attrs": {"div": 10, "num_date": {"value": 2020.6652689253858, "confidence": [2020.5900104391173, 2020.7117486338798]}}, "branch_attrs": {"mutations": {"nuc": ["C4596A", "C18377T", "G19086T", "A20649T", "A28254-"]}}, "children": [{"name": "USA/CO-CDPHE-2009175722/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.7117486338798, "confidence": [2020.7117486338798, 2020.7117486338798]}, "tsne_x": {"value": -6.213777281370379}, "umap_x": {"value": 6.3184714}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.7516192}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.009003104967537}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.552077382309843}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.3885093721278627}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": -5.576625608603898}, "mds3": {"value": -0.2719218815457168}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.5121205683934484}}, "branch_attrs": {"mutations": {"nuc": ["G25074T"], "S": ["G1171V"]}, "labels": {"aa": "S: G1171V"}}}, {"name": "USA/CO-CDPHE-2009244590/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.73087431694, "confidence": [2020.73087431694, 2020.73087431694]}, "tsne_x": {"value": -6.281162976677177}, "umap_x": {"value": 5.489903}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0289626}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.694163685214095}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.62187819424832}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.459602012502895}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "USA"}, "mds2": {"value": 8.362191136716394}, "mds3": {"value": 0.4699907951415176}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.068765448812428}}, "branch_attrs": {"mutations": {"nuc": ["G8508A", "C25549T"]}}}]}, {"name": "NODE_0001173", "node_attrs": {"div": 6, "num_date": {"value": 2020.513901997416, "confidence": [2020.248872446773, 2020.6280899155588]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001175", "node_attrs": {"div": 6, "num_date": {"value": 2020.5382298465433, "confidence": [2020.255795505793, 2020.6316741651426]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000511", "node_attrs": {"div": 8, "num_date": {"value": 2020.6541916595968, "confidence": [2020.571798231065, 2020.6543715846994]}}, "branch_attrs": {"mutations": {"nuc": ["C18486T", "T22162C"]}}, "children": [{"name": "USA/TG955549/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.6543715846994, "confidence": [2020.6543715846994, 2020.6543715846994]}, "tsne_x": {"value": -5.277899924427336}, "umap_x": {"value": 7.6031365}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.9176683}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 46.96411389723016}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.240"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.753165502275415}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.9983652023731664}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 1.6049233979825162}, "mds3": {"value": 0.9918319634835236}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.5760821427321767}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/TG974381/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.7390710382513, "confidence": [2020.7390710382513, 2020.7390710382513]}, "tsne_x": {"value": -4.998392038942429}, "umap_x": {"value": 7.467436}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.8238876}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 12.18566728902862}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.240"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.338054168139628}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.0592978863122685}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": -1.340578617649927}, "mds3": {"value": 1.294885267218917}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.1044550333577552}}, "branch_attrs": {"mutations": {"nuc": ["A9058G", "C18115T", "C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}, {"name": "NODE_0000520", "node_attrs": {"div": 11, "num_date": {"value": 2020.6672521287426, "confidence": [2020.5119016189237, 2020.7584694167144]}}, "branch_attrs": {"mutations": {"nuc": ["G2258A", "A6441G", "C8140T", "A9204G", "C29445T"]}}, "children": [{"name": "NODE_0001178", "node_attrs": {"div": 11, "num_date": {"value": 2020.705417361386, "confidence": [2020.5117585448602, 2020.7813617257793]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG769836/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.8374316939892, "confidence": [2020.8374316939892, 2020.8374316939892]}, "tsne_x": {"value": -6.914660987484877}, "umap_x": {"value": 5.321676}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0615933}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 32.875374274792144}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.60813893699527}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 5.202151378332824}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 8.806777770954119}, "mds3": {"value": 2.258906379583346}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.375164125711732}}, "branch_attrs": {"mutations": {"nuc": ["G13459A", "C28205T"]}}}, {"name": "USA/CA-CZB-23347/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.0369863013698, "confidence": [2021.0369863013698, 2021.0369863013698]}, "tsne_x": {"value": -6.997627947388881}, "umap_x": {"value": 3.1714106}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6051688}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.291295245244598}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.641227826349905}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.06980958460691}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": 17.683940224720843}, "mds3": {"value": 3.6516612069437855}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.250272835460692}}, "branch_attrs": {"mutations": {"nuc": ["G1495T", "C2197T", "C4927T", "T8166C", "C8299T", "C19374T", "C28748T", "G29468C", "C29627T"]}}}]}, {"name": "NODE_0000522", "node_attrs": {"div": 12, "num_date": {"value": 2020.7058769597218, "confidence": [2020.5454383926199, 2020.7752244803758]}}, "branch_attrs": {"mutations": {"nuc": ["G29384T"]}}, "children": [{"name": "USA/MT-UMGC-04318/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_x": {"value": -6.979381158078417}, "umap_x": {"value": 3.4777458}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6522608}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.682358531099312}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.61823050696418}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.82046988368189}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Montana"}, "mds2": {"value": -10.493159227782147}, "mds3": {"value": 1.079210875109175}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.805662276140396}}, "branch_attrs": {"mutations": {"nuc": ["C10641T", "C12357T", "T20877C", "T23113C", "C28744T", "C29870A"]}}}, {"name": "USA/FL-CDC-LC0021156/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.1602739726027, "confidence": [2021.1602739726027, 2021.1602739726027]}, "tsne_x": {"value": -7.088337041600454}, "umap_x": {"value": 2.5153987}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4894664}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.984882151335235}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.643195343593163}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.139172603211405}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Florida"}, "mds2": {"value": 22.249946047796808}, "mds3": {"value": 3.811634367317767}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.683051257699564}}, "branch_attrs": {"mutations": {"nuc": ["G1126T", "C1150T", "C2881T", "C5310T", "C6449T", "G7100A", "A7841T", "C10747T", "T14853C", "C23997T"], "S": ["P812L"]}, "labels": {"aa": "S: P812L"}}}]}]}]}, {"name": "NODE_0001180", "node_attrs": {"div": 6, "num_date": {"value": 2020.5312166596455, "confidence": [2020.2481219806943, 2020.6284843093867]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-26133/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.8401639344263, "confidence": [2020.8401639344263, 2020.8401639344263]}, "tsne_x": {"value": -6.56484508726694}, "umap_x": {"value": 2.5230184}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.4927132}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.170836164382353}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.980939829914558}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.885727565241492}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "California"}, "mds2": {"value": -20.17150369244491}, "mds3": {"value": 3.659744996536802}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.775589017921863}}, "branch_attrs": {"mutations": {"nuc": ["C346T", "C2106T", "G5425T", "C6636T", "C10369T", "A10761G", "C11208T", "A12072G", "T14313C", "G18756T", "C20404T", "C21812T", "G25459T", "A28168C", "A28254-", "C29167T"]}}}, {"name": "NODE_0001181", "node_attrs": {"div": 6, "num_date": {"value": 2020.5422249753829, "confidence": [2020.2482552274519, 2020.63383345731]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/DE-CDC-2-3714090/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_x": {"value": -6.255324249317924}, "umap_x": {"value": 4.728516}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2550032}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.298373485249962}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.40892913261437}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.04699245531664}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Delaware"}, "mds2": {"value": 12.477710972667513}, "mds3": {"value": 0.938249269690942}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.582651395738241}}, "branch_attrs": {"mutations": {"nuc": ["T6856C", "G10882T", "A11782G", "A12124T", "C18508T", "T20197C", "A20243T", "C26681T", "A28792T"]}}}, {"name": "NODE_0001182", "node_attrs": {"div": 6, "num_date": {"value": 2020.55757108441, "confidence": [2020.2497531592685, 2020.639625517753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MT-UMGC-03902/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.7445355191257, "confidence": [2020.7445355191257, 2020.7445355191257]}, "tsne_x": {"value": -5.618908448934696}, "umap_x": {"value": 6.910402}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.4263841}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.645849500122125}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.76293744643356}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.884646211189293}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Montana"}, "mds2": {"value": 2.33176734092555}, "mds3": {"value": 0.0695907263111544}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.664187743327082}}, "branch_attrs": {"mutations": {"nuc": ["G17790T", "T22297C", "C29870A"]}}}, {"name": "NODE_0001183", "node_attrs": {"div": 6, "num_date": {"value": 2020.5857572458312, "confidence": [2020.2478360480018, 2020.6396122928948]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Mexico/SEARCH-100761/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.9439890710382, "confidence": [2020.9439890710382, 2020.9439890710382]}, "tsne_x": {"value": -6.245618170656926}, "umap_x": {"value": 3.5814648}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5292704}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.86685405714111}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.232"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.23949821847277}, "country": {"value": "Mexico"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.530486500210137}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Baja California"}, "mds2": {"value": -17.01457093158048}, "mds3": {"value": 6.259301481169069}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 21.51955163131436}}, "branch_attrs": {"mutations": {"nuc": ["T5804C", "C5849T", "C6285T", "C6706T", "A13288C", "C16092T", "T22917G", "G25720T", "G26325A", "G27987T", "C28291T", "T28600C", "G29474T"], "S": ["L452R"]}, "labels": {"aa": "S: L452R"}}}, {"name": "NODE_0001184", "node_attrs": {"div": 6, "num_date": {"value": 2020.5879765856885, "confidence": [2020.249489745649, 2020.6552623333455]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Colombia/UW20112706240/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.905737704918, "confidence": [2020.905737704918, 2020.905737704918]}, "tsne_x": {"value": -4.980013988757892}, "umap_x": {"value": 2.5949392}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.52967}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.044977420103807}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.305263968502196}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.23497008510988}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Colombia"}, "mds2": {"value": -17.135703005043997}, "mds3": {"value": 7.814381608676729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.07027884669125}}, "branch_attrs": {"mutations": {"nuc": ["G3483A", "C7006T", "C7528T", "G9479T", "C10156T", "C10969T", "G11670A", "C12085T", "C14183T", "C14724T", "T23443C", "C24442T", "C25658T", "C26111T", "C27306T"]}}}, {"name": "USA/TG758939/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.8046448087432, "confidence": [2020.8046448087432, 2020.8046448087432]}, "tsne_x": {"value": -5.4284932083923385}, "umap_x": {"value": 5.288009}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0684552}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.8509041465473}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.396"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -17.28095186725655}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 6.129756232196658}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Arizona"}, "mds2": {"value": 8.040198721330027}, "mds3": {"value": 4.9215816998289945}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.189768254198064}}, "branch_attrs": {"mutations": {"nuc": ["A518-", "T519-", "G520-", "C1191T", "C6388T", "C9521A", "C20543T", "C24904T", "A25602G", "A29567G"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001185", "node_attrs": {"div": 4, "num_date": {"value": 2020.0737582009488, "confidence": [2020.0385762990375, 2020.1377392775576]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001188", "node_attrs": {"div": 4, "num_date": {"value": 2020.1255119871919, "confidence": [2020.0870797156276, 2020.2098525365336]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000551", "node_attrs": {"div": 5, "num_date": {"value": 2020.1957633387417, "confidence": [2020.1478794587797, 2020.2165177932864]}}, "branch_attrs": {"mutations": {"nuc": ["C15324T"]}}, "children": [{"name": "GHA/2853_S7/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2418032786886, "confidence": [2020.2418032786886, 2020.2418032786886]}, "tsne_x": {"value": -5.698114738810115}, "umap_x": {"value": 7.8207893}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.7045803}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 52.92153045696294}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.67419510448686}, "country": {"value": "Ghana"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 1.2010570107225835}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Ghana"}, "mds2": {"value": -1.36183412165469}, "mds3": {"value": 0.3276813235299719}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.112237796841884}}, "branch_attrs": {"mutations": {"nuc": ["C18570T", "A23665C", "T24769G"]}}}, {"name": "NODE_0001190", "node_attrs": {"div": 5, "num_date": {"value": 2020.2005528282518, "confidence": [2020.1760873286228, 2020.217213114754]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10216-CVDP-0190", "node_attrs": {"div": 5, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_x": {"value": -4.955106603143632}, "umap_x": {"value": 8.1766405}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.47517535}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.498553795386456}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.63780126574424}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.781099128863209}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": 0.6455535841797184}, "mds3": {"value": 0.0284980867475413}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 6.2938588866178105}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001191", "node_attrs": {"div": 5, "num_date": {"value": 2020.215686022219, "confidence": [2020.192845219841, 2020.2263716294538]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "FRA/IHUCOVID-011460_Illu1/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.266393442623, "confidence": [2020.266393442623, 2020.266393442623]}, "tsne_x": {"value": -4.9889579907072585}, "umap_x": {"value": 7.4981813}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.99028265}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.597235652887936}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.517335081011003}, "country": {"value": "France"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.049713225966742}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "France"}, "mds2": {"value": 0.6351888582337327}, "mds3": {"value": -0.3354691809572268}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.517981884799218}}, "branch_attrs": {"mutations": {"nuc": ["C2462T"]}}}, {"name": "NODE_0001192", "node_attrs": {"div": 5, "num_date": {"value": 2020.2165523457907, "confidence": [2020.2024358047531, 2020.2327786416145]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR3197/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_x": {"value": -5.204788087125047}, "umap_x": {"value": 7.191233}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2175071}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.60647372037117}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.371801795788302}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.375023101502975}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.8451553042731685}, "mds3": {"value": -0.1159782405632196}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.422696651782913}}, "branch_attrs": {"mutations": {"nuc": ["C13335T", "C17746T"]}}}, {"name": "NODE_0001194", "node_attrs": {"div": 5, "num_date": {"value": 2020.2330902103142, "confidence": [2020.198354813989, 2020.2910600569649]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GHA/82879_S48/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3838797814208, "confidence": [2020.3838797814208, 2020.3838797814208]}, "tsne_x": {"value": -5.819659176137173}, "umap_x": {"value": 6.5593305}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6365986}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.5607395307140335}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.007947309301924}, "country": {"value": "Ghana"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.823240526432774}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Ghana"}, "mds2": {"value": 5.183232119527397}, "mds3": {"value": 0.6961333249148858}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -13.395921275623904}}, "branch_attrs": {"mutations": {"nuc": ["T3547C", "G4399T", "G14710A", "G17860A", "A23416T"]}}}, {"name": "NODE_0001197", "node_attrs": {"div": 5, "num_date": {"value": 2020.3209115145644, "confidence": [2020.1716999059777, 2020.3856402335557]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC157b/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_x": {"value": -5.260819680376784}, "umap_x": {"value": 7.446656}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.0296396}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.286828699626271}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1.210"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.364685944250922}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.506126753666948}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Gujarat"}, "mds2": {"value": 1.0044690340494926}, "mds3": {"value": 0.0345017219208773}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.57114678321795}}, "branch_attrs": {"mutations": {"nuc": ["C3634T", "G20006A"]}}}, {"name": "NZL/20CV0574/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8784153005465, "confidence": [2020.8784153005465, 2020.8784153005465]}, "tsne_x": {"value": -5.614501540373338}, "umap_x": {"value": 3.0759518}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.5850403}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.66722841630088}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.517596531301756}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.183721864234675}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Auckland"}, "mds2": {"value": 20.122196097628777}, "mds3": {"value": 2.992946606096012}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1343089696898083}}, "branch_attrs": {"mutations": {"nuc": ["C414A", "C936T", "A4457G", "C5907T", "C6040T", "A8965G", "C12312T", "C12781T", "T14211C", "C23625T", "G24257T", "C27684T", "C28399T", "G28975T", "G29179T"], "S": ["A688V", "A899S"]}, "labels": {"aa": "S: A688V, A899S"}}}]}]}]}]}]}]}, {"name": "NODE_0001198", "node_attrs": {"div": 4, "num_date": {"value": 2020.2006437091907, "confidence": [2020.1504964271874, 2020.23420073233]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000566", "node_attrs": {"div": 5, "num_date": {"value": 2020.3567526508502, "confidence": [2020.2240870921623, 2020.5853393721382]}}, "branch_attrs": {"mutations": {"nuc": ["C28887T"]}}, "children": [{"name": "NODE_0000567", "node_attrs": {"div": 7, "num_date": {"value": 2020.5319765481788, "confidence": [2020.3012567661283, 2020.6578980369904]}}, "branch_attrs": {"mutations": {"nuc": ["A1989G", "C25669T"]}}, "children": [{"name": "IND/GBRC438/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8592896174864, "confidence": [2020.8592896174864, 2020.8592896174864]}, "tsne_x": {"value": -6.197126892475041}, "umap_x": {"value": 2.967718}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.564063}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.537024662690196}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.454986387938735}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.60515844184244}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Gujarat"}, "mds2": {"value": -12.522156497600538}, "mds3": {"value": 2.927137803182432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.898399781274986}}, "branch_attrs": {"mutations": {"nuc": ["A2269G", "C3686T", "T4906C", "A11519G", "A16534G", "G19891T", "G25494T", "G26416T", "C26681T", "A28272T", "G29224T", "G29706C"]}}}, {"name": "IND/GBRC517b/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_x": {"value": -6.13098771096808}, "umap_x": {"value": 5.2563643}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0449364}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.534630859939549}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.474317925203986}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.475192033562845}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "India"}, "mds2": {"value": 6.70307450138809}, "mds3": {"value": 0.9217444747280475}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.6222259528343423}}, "branch_attrs": {"mutations": {"nuc": ["G2210T", "T4149G", "C16329T", "A21137G", "C29730T"]}}}]}, {"name": "NODE_0000568", "node_attrs": {"div": 6, "num_date": {"value": 2020.481829137189, "confidence": [2020.246894810974, 2020.6107954174122]}}, "branch_attrs": {"mutations": {"nuc": ["T29029C"]}}, "children": [{"name": "BTN/RCDC0010-SV210026/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -5.390112248181786}, "umap_x": {"value": 3.5225682}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.6102164}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.218051564971772}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.258068711876495}, "country": {"value": "Bhutan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.639754893630055}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Bhutan"}, "mds2": {"value": 11.324740305065829}, "mds3": {"value": 1.3143576122358016}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 9.434459729323985}}, "branch_attrs": {"mutations": {"nuc": ["G16065T", "T19914G", "G19962A", "C21707T", "C22624T", "C23854T", "G24124T", "C24865T", "C25613T", "G25907T", "C29296T"], "S": ["H49Y", "K854N"]}, "labels": {"aa": "S: H49Y, K854N"}}}, {"name": "PER/un-CDC-4033331-001/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_x": {"value": -8.196270679750123}, "umap_x": {"value": -1.6673137}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4226084}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.803114750408498}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.73424583547236}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.0622479894269472}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -3.840423149284913}, "mds3": {"value": -3.824826387575061}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.7249398518855837}}, "branch_attrs": {"mutations": {"nuc": ["C4893T", "T6435G", "G10265A", "G11083T", "G19800T", "G23401T", "A28522C", "C29635T"], "S": ["Q613H"]}, "labels": {"aa": "S: Q613H"}}}]}]}, {"name": "NODE_0001202", "node_attrs": {"div": 4, "num_date": {"value": 2020.2154216318795, "confidence": [2020.1804423292422, 2020.2418456791365]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WI-UW-153/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2718579234972, "confidence": [2020.2718579234972, 2020.2718579234972]}, "tsne_x": {"value": -5.048190731335242}, "umap_x": {"value": 6.9680653}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.4089773}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.016744886442282}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.90953969838885}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.181642478112671}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Wisconsin"}, "mds2": {"value": 3.490269278834107}, "mds3": {"value": -0.6699654939578282}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1529407745796621}}, "branch_attrs": {"mutations": {"nuc": ["A696C", "G3871T", "T3931C", "C28977T"]}}}, {"name": "NODE_0001203", "node_attrs": {"div": 4, "num_date": {"value": 2020.2403082052995, "confidence": [2020.189369330306, 2020.2700069574971]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX672290", "node_attrs": {"div": 5, "num_date": {"value": 2020.2800546448088, "confidence": [2020.2800546448088, 2020.2800546448088]}, "tsne_x": {"value": -4.747893355226998}, "umap_x": {"value": 8.181122}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.4694259}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 46.6365480860065}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.713271075919748}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.14172077583139}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": -0.2094765515522371}, "mds3": {"value": 0.0275949685986317}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.233821869604887}}, "branch_attrs": {"mutations": {"nuc": ["C22530T"], "S": ["T323I"]}, "labels": {"aa": "S: T323I"}}}, {"name": "NODE_0001204", "node_attrs": {"div": 4, "num_date": {"value": 2020.2496454118052, "confidence": [2020.1808296137121, 2020.326145807988]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5276/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_x": {"value": -4.755893447626617}, "umap_x": {"value": 8.141328}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.49668372}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.916184842934255}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.739770464656084}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.339165025434769}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.54764188885495}, "mds3": {"value": -0.3603171328258586}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.242191506183204}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001206", "node_attrs": {"div": 4, "num_date": {"value": 2020.2852553467906, "confidence": [2020.1774298357573, 2020.3283603478346]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001207", "node_attrs": {"div": 4, "num_date": {"value": 2020.3133257800248, "confidence": [2020.1803504076008, 2020.3374389872388]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C5119/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.3483606557377, "confidence": [2020.3483606557377, 2020.3483606557377]}, "tsne_x": {"value": -4.747033258281176}, "umap_x": {"value": 7.8815527}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.6744983}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.2014760685591}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.69152749959162}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.512022787776849}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 0.4720493925280778}, "mds3": {"value": 0.5846973747051866}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.402675840714218}}, "branch_attrs": {"mutations": {"nuc": ["G25455T"]}}}, {"name": "NODE_0001208", "node_attrs": {"div": 4, "num_date": {"value": 2020.3220158863585, "confidence": [2020.1854234035306, 2020.3417730137346]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C7081/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_x": {"value": -5.067263133028326}, "umap_x": {"value": 8.114721}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5200257}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 14.372406378774826}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.934187905965}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 3.0963747265973502}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 0.3304882570403342}, "mds3": {"value": 0.8197864533724867}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 19.215329917346363}}, "branch_attrs": {"mutations": {"nuc": ["G22017T"], "S": ["W152L"]}, "labels": {"aa": "S: W152L"}}}, {"name": "OX470157", "node_attrs": {"div": 6, "num_date": {"value": 2020.3483606557377, "confidence": [2020.3483606557377, 2020.3483606557377]}, "tsne_x": {"value": -4.764754830406303}, "umap_x": {"value": 7.5466948}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.96114475}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.999316089973739}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.46288994529635}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.8978084968272753}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "England"}, "mds2": {"value": 0.950413450854654}, "mds3": {"value": -0.0763303189519847}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1531297348229434}}, "branch_attrs": {"mutations": {"nuc": ["T1602-", "T1603-", "A1604-", "C3792T", "C7056T"]}}}]}]}, {"name": "NODE_0001209", "node_attrs": {"div": 4, "num_date": {"value": 2020.3208725931788, "confidence": [2020.171923028563, 2020.3371790433482]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC2137/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_x": {"value": -5.606576571198715}, "umap_x": {"value": 7.128624}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.2438487}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.614949449034556}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.31972662241438}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.3670123241656165}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Victoria"}, "mds2": {"value": 1.959350619336135}, "mds3": {"value": 0.2710525175063219}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.866230134111267}}, "branch_attrs": {"mutations": {"nuc": ["G14294A", "A23746G", "G24077A", "A29622C"], "S": ["D839N"]}, "labels": {"aa": "S: D839N"}}}, {"name": "NODE_0001210", "node_attrs": {"div": 4, "num_date": {"value": 2020.3231746994277, "confidence": [2020.177742585395, 2020.3481493121003]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV315/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4931693989072, "confidence": [2020.4931693989072, 2020.4931693989072]}, "tsne_x": {"value": -6.707191716282681}, "umap_x": {"value": 4.6807256}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.3350194}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.933496284561359}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.160638623014602}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.303868958788382}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Nigeria"}, "mds2": {"value": -9.066906167424763}, "mds3": {"value": -1.2532300062031712}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.206381712950031}}, "branch_attrs": {"mutations": {"nuc": ["C1314T", "G20443T", "G20557T", "G22957A", "A25190G", "G27375A", "T27401C", "C27999T", "A28254-", "G29239T", "G29431A"], "S": ["I1210V"]}, "labels": {"aa": "S: I1210V"}}}, {"name": "NODE_0001211", "node_attrs": {"div": 4, "num_date": {"value": 2020.327454800483, "confidence": [2020.184246496491, 2020.3931357111694]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C20407/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.4658469945355, "confidence": [2020.4658469945355, 2020.4658469945355]}, "tsne_x": {"value": -5.015508439348879}, "umap_x": {"value": 8.043581}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5603264}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 42.273477344125695}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -16.160515205844717}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 3.2988236002473066}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 0.8781242556559495}, "mds3": {"value": 0.1892648145692237}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.580732486291635}}, "branch_attrs": {"mutations": {"nuc": ["C3096T", "G14584A"]}}}, {"name": "NODE_0001212", "node_attrs": {"div": 4, "num_date": {"value": 2020.339879526998, "confidence": [2020.1853884447785, 2020.394927876085]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC256a/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4467213114754, "confidence": [2020.4467213114754, 2020.4467213114754]}, "tsne_x": {"value": -5.570030235984767}, "umap_x": {"value": 6.5771017}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.6434915}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.290446880591922}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.61520740262101}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.949445942451936}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Gujarat"}, "mds2": {"value": 4.98486463623767}, "mds3": {"value": 0.7267695418665049}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.572426491969987}}, "branch_attrs": {"mutations": {"nuc": ["C3737T", "G4866T", "A6748G", "C8043T", "C14425A", "T21890C"]}}}, {"name": "NODE_0001215", "node_attrs": {"div": 4, "num_date": {"value": 2020.3614328534475, "confidence": [2020.1829028708828, 2020.3995331615722]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX552937", "node_attrs": {"div": 7, "num_date": {"value": 2020.4166666666667, "confidence": [2020.4166666666667, 2020.4166666666667]}, "tsne_x": {"value": -4.8289949525682365}, "umap_x": {"value": 8.118555}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.5080063}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 11.735284946201432}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.275820298629943}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.057574084271589}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Wales"}, "mds2": {"value": -0.3700835998541733}, "mds3": {"value": 1.3933660345385996}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.357200810475313}}, "branch_attrs": {"mutations": {"nuc": ["T9743C", "C14741T", "T18324C"]}}}, {"name": "NODE_0001216", "node_attrs": {"div": 4, "num_date": {"value": 2020.4827223177067, "confidence": [2020.3115015047063, 2020.5405464480875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-DCV1/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.5505464480875, "confidence": [2020.5505464480875, 2020.5505464480875]}, "tsne_x": {"value": -4.753013353687785}, "umap_x": {"value": 7.8636346}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.714626}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.786271632640266}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.746709928927295}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.442772615959631}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.5336915110171038}, "mds3": {"value": -0.3954172691863625}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.394084898598855}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001219", "node_attrs": {"div": 4, "num_date": {"value": 2020.506171426331, "confidence": [2020.3241258752776, 2020.5505464480875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-DCV05/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.5505464480875, "confidence": [2020.5505464480875, 2020.5505464480875]}, "tsne_x": {"value": -4.757996737027301}, "umap_x": {"value": 7.957918}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -0.6150373}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.18875886040067}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -15.7470906150044}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.344374625024261}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.4837733090835884}, "mds3": {"value": -0.4211399605632241}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.05607431373121}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001226", "node_attrs": {"div": 4, "num_date": {"value": 2020.5290051757866, "confidence": [2020.3224562034911, 2020.570171450246]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C54729/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.6789617486338, "confidence": [2020.6789617486338, 2020.6789617486338]}, "tsne_x": {"value": -5.088582803630615}, "umap_x": {"value": 6.7453184}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -1.5432351}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.6160302456389977}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.50035809515839}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.8703827230564944}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 4.302540813461794}, "mds3": {"value": 1.4796063984992138}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.6254957518884872}}, "branch_attrs": {"mutations": {"nuc": ["G2867T", "A2920G", "C8290T", "C8352T", "C18747T", "G28916T"]}}}, {"name": "NODE_0001229", "node_attrs": {"div": 4, "num_date": {"value": 2020.543119664858, "confidence": [2020.3241817440605, 2020.5832017242367]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NYI-NA-20-130/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6707650273224, "confidence": [2020.6707650273224, 2020.6707650273224]}, "tsne_x": {"value": -8.209779801848162}, "umap_x": {"value": -3.0741503}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -5.331647}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.690002190767899}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -14.94288179889351}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.4184477891825644}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "New York"}, "mds2": {"value": 1.078498712863502}, "mds3": {"value": -2.231351601736358}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.459168102664735}}, "branch_attrs": {"mutations": {"nuc": ["G213T", "T7336C", "G21372T", "T23671C", "C26625T"]}}}, {"name": "NODE_0000572", "node_attrs": {"div": 11, "num_date": {"value": 2020.7053462304991, "confidence": [2020.6186053035017, 2020.7939761386797]}}, "branch_attrs": {"mutations": {"nuc": ["C1514T", "G5542T", "C10029T", "A11451G", "G17122T", "G17320T", "C18463T"]}}, "children": [{"name": "NODE_0001231", "node_attrs": {"div": 11, "num_date": {"value": 2020.7335709230501, "confidence": [2020.6213955571443, 2020.8063148627891]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C72636/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8811475409836, "confidence": [2020.8811475409836, 2020.8811475409836]}, "tsne_x": {"value": -6.590860498725387}, "umap_x": {"value": 4.586113}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.329622}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.3509744614511765}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "Nextclade_pango": {"value": "B.1.549"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.227710791364244}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.012238156695688}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": 12.926578404495102}, "mds3": {"value": 3.196173388170728}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.450571618233277}}, "branch_attrs": {"mutations": {"nuc": ["C1884T", "G7756T", "T19704C", "G23611A", "G25644T"]}}}, {"name": "KEN/C71994/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.8784153005465, "confidence": [2020.8784153005465, 2020.8784153005465]}, "tsne_x": {"value": -6.5763069497068685}, "umap_x": {"value": 5.4118876}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.0271504}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.8193076946127493}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.549"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.250512846728016}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.442313134277069}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": -8.566669678892115}, "mds3": {"value": 0.4516376868389891}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.623045084975355}}, "branch_attrs": {"mutations": {"nuc": ["C10894T", "C20199T"]}}}]}, {"name": "NODE_0001232", "node_attrs": {"div": 11, "num_date": {"value": 2020.7325667168025, "confidence": [2020.6207797090133, 2020.7933998787214]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C67079/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_x": {"value": -6.579787714302934}, "umap_x": {"value": 5.0180383}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.2107625}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.281333842444735}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.549"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.245990020206111}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.1858338549102867}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": -11.057659620508034}, "mds3": {"value": -0.3549977224221027}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8819972800868998}}, "branch_attrs": {"mutations": {"nuc": ["A460G", "T17497C", "C25484T"]}}}, {"name": "KEN/C66917/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_x": {"value": -6.578594298108982}, "umap_x": {"value": 5.135152}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -2.1520596}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.2482090765528655}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.549"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.247042064512284}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.8723618927984238}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "division": {"value": "Kenya"}, "mds2": {"value": -10.322285650286496}, "mds3": {"value": -0.4915494441749765}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8929836143234376}}, "branch_attrs": {"mutations": {"nuc": ["G1264A", "C7528T", "G21800T"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001007", "node_attrs": {"div": 7, "num_date": {"value": 2020.1246869462193, "confidence": [2020.1035728307509, 2020.1509617986242]}}, "branch_attrs": {"mutations": {"nuc": ["G28881A", "G28882A", "G28883C"]}}, "children": [{"name": "ISR/hCov-19-Israel-CVL-n1749/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1707650273224, "confidence": [2020.1707650273224, 2020.1707650273224]}, "tsne_x": {"value": -12.16126468251692}, "umap_x": {"value": -3.2698414}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2867246}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.971629425573955}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.8144084168359}, "country": {"value": "Israel"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.027743673682488}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Israel"}, "mds2": {"value": 0.9080898738054252}, "mds3": {"value": -4.434380347670382}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.551040097492312}}, "branch_attrs": {"mutations": {"nuc": ["G19272A"]}}}, {"name": "NGA/CV-1/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -12.157286701473687}, "umap_x": {"value": -3.4727297}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2111616}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.025570541360613}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.829328926723804}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.462959306881758}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Nigeria"}, "mds2": {"value": 1.1356891669486575}, "mds3": {"value": -4.532361709135955}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 6.060202985073379}}, "branch_attrs": {"mutations": {"nuc": ["G957A"]}}}, {"name": "OX634064", "node_attrs": {"div": 8, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -12.176923058023666}, "umap_x": {"value": -3.5564845}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.148278}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.766100076769163}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.839798362483606}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.453873691819884}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.8106125930845302}, "mds3": {"value": -4.121634544729408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.331513198268663}}, "branch_attrs": {"mutations": {"nuc": ["A27938G"]}}}, {"name": "NODE_0001043", "node_attrs": {"div": 8, "num_date": {"value": 2020.195864084632, "confidence": [2020.1446184916626, 2020.2274218895748]}}, "branch_attrs": {"mutations": {"nuc": ["G11230T"]}}, "children": [{"name": "OX648894", "node_attrs": {"div": 12, "num_date": {"value": 2020.7554644808743, "confidence": [2020.7554644808743, 2020.7554644808743]}, "tsne_x": {"value": -13.325593988514887}, "umap_x": {"value": -2.150239}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4195237}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.380375005869055}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.311"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.353462137351675}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.1686618336940182}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Wales"}, "mds2": {"value": 1.9367180384418576}, "mds3": {"value": -6.006712839653216}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.3529960713824053}}, "branch_attrs": {"mutations": {"nuc": ["G11401T", "T24088C", "C25156T", "G25617T", "C29730-", "A29731-", "C29732-", "C29733-", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-", "A29763-", "G29764-", "T29765-", "G29766-", "A29767-", "A29768-", "C29769-", "A29770-", "A29771-", "T29772-", "G29773-", "C29774-", "T29775-", "A29776-", "G29777-", "G29778-"]}}}, {"name": "OA971628", "node_attrs": {"div": 12, "num_date": {"value": 2020.2609289617487, "confidence": [2020.2609289617487, 2020.2609289617487]}, "tsne_x": {"value": -13.117850927298216}, "umap_x": {"value": -2.8201973}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.480587}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.003537434227046}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.295820112541309}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.0898674146464954}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.8759533450604164}, "mds3": {"value": -6.278839216409655}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1349425154935806}}, "branch_attrs": {"mutations": {"nuc": ["C18981T", "G21724T", "C22326T", "G23587C"], "S": ["L54F", "S255F", "Q675H"]}, "labels": {"aa": "S: L54F, S255F, Q675H"}}}]}, {"name": "NODE_0001077", "node_attrs": {"div": 8, "num_date": {"value": 2020.1550786828125, "confidence": [2020.1055053088148, 2020.19179502015]}}, "branch_attrs": {"mutations": {"nuc": ["C9430T"]}}, "children": [{"name": "OU809617", "node_attrs": {"div": 15, "num_date": {"value": 2020.386612021858, "confidence": [2020.386612021858, 2020.386612021858]}, "tsne_x": {"value": -11.701662602357784}, "umap_x": {"value": -0.8700203}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.187804}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.245687250836226}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -17.160695250932775}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.8153387672954007}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": -6.00168607987752}, "mds3": {"value": -9.42262070813578}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.528003678288187}}, "branch_attrs": {"mutations": {"nuc": ["G5411T", "G6669T", "C19017T", "G22992A", "C26270T", "C27630T", "C27641T"], "S": ["S477N"]}, "labels": {"aa": "S: S477N"}}}, {"name": "TUN/TUN-20209111/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.2773224043715, "confidence": [2020.2773224043715, 2020.2773224043715]}, "tsne_x": {"value": -14.122904409057758}, "umap_x": {"value": 0.17550184}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.4862123}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.934171904231299}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.189"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.564791985500506}, "country": {"value": "Tunisia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.648937892999385}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Tunisia"}, "mds2": {"value": 9.651701201199522}, "mds3": {"value": -9.19077555128147}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.955234338225832}}, "branch_attrs": {"mutations": {"nuc": ["C7764T", "C10340T", "G12514T", "C12823T", "G21372T", "C23613T", "G27955A", "G29234T", "G29235T", "T29772C"], "S": ["A684V"]}, "labels": {"aa": "S: A684V"}}}]}, {"name": "NODE_0001057", "node_attrs": {"div": 7, "num_date": {"value": 2020.2030221018051, "confidence": [2020.1582486440243, 2020.230826152325]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001060", "node_attrs": {"div": 8, "num_date": {"value": 2020.321006081473, "confidence": [2020.1606930522325, 2020.3755814119684]}}, "branch_attrs": {"mutations": {"nuc": ["C10755T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0768/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.558743169399, "confidence": [2020.558743169399, 2020.558743169399]}, "tsne_x": {"value": -10.920794923772718}, "umap_x": {"value": -1.0987773}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.283663}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 34.58921407405919}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.934548865000382}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 7.327117061678732}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 4.872455828881627}, "mds3": {"value": -7.940131152389048}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.527345787798303}}, "branch_attrs": {"mutations": {"nuc": ["C1387T", "G1747A", "G16405A", "C18464T", "C21721T", "C25854T"]}}}, {"name": "ARM/UW-ARM42/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6680327868853, "confidence": [2020.6680327868853, 2020.6680327868853]}, "tsne_x": {"value": -10.837568876451366}, "umap_x": {"value": -0.11618872}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6733165}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.08368568596449}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.372838313279209}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.725970811342805}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": 8.410233480577876}, "mds3": {"value": -9.347881215797804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.081705292561928}}, "branch_attrs": {"mutations": {"nuc": ["G11634T", "C13860T", "C14676T", "T16680C", "G18997T", "G20275T", "G21123T", "G21778A", "A28272G"]}}}]}, {"name": "NODE_0001237", "node_attrs": {"div": 7, "num_date": {"value": 2020.233606557377, "confidence": [2020.197622850442, 2020.233606557377]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC438/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_x": {"value": -12.139048012573994}, "umap_x": {"value": -3.4330785}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2346735}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.644881121553554}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.814557813955092}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.57140728675908}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Victoria"}, "mds2": {"value": 0.8964495382981934}, "mds3": {"value": -4.082145717447069}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.538053957407165}}, "branch_attrs": {"mutations": {"nuc": ["G521-", "T522-", "T523-"]}}}, {"name": "NODE_0001021", "node_attrs": {"div": 8, "num_date": {"value": 2020.2487971806954, "confidence": [2020.2181413411906, 2020.3306038075993]}}, "branch_attrs": {"mutations": {"nuc": ["C6541T"]}}, "children": [{"name": "BGD/BCSIR_NILMRC_181/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_x": {"value": -14.519510768318096}, "umap_x": {"value": -0.042999662}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6684837}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.969054299024944}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -14.975041407333922}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.822896477794051}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 1.132739200812857}, "mds3": {"value": -13.709658918823122}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.940475129401925}}, "branch_attrs": {"mutations": {"nuc": ["A1163T", "C8760T", "G11417T", "T12535G", "C14178T", "C15925T", "C18744T", "A23329T", "G28280T"]}}}, {"name": "Estonia/Cov0503/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7254098360656, "confidence": [2020.7254098360656, 2020.7254098360656]}, "tsne_x": {"value": -9.85552106857994}, "umap_x": {"value": -0.69998693}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.0388927}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.833099827710568}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.10"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.405561354182748}, "country": {"value": "Estonia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.194232437197541}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Estonia"}, "mds2": {"value": 0.060253718354404}, "mds3": {"value": -10.561005950447788}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.632414828173824}}, "branch_attrs": {"mutations": {"nuc": ["C3317T", "G5206T", "C9072T", "G14181C", "C19170T", "G19509A", "C21707T", "C26028T"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}}]}]}]}, {"name": "NODE_0001172", "node_attrs": {"div": 8, "num_date": {"value": 2020.1543715846994, "confidence": [2020.1385655405027, 2020.1543715846994]}}, "branch_attrs": {"mutations": {"nuc": ["T19839C"]}}, "children": [{"name": "Switzerland/BL-SNRCI-29950902/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_x": {"value": -12.024015955537152}, "umap_x": {"value": -3.5220442}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1374373}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.674761045899757}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.05158894171089}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.674787740906239}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Basel-Land"}, "mds2": {"value": 0.9383967930496696}, "mds3": {"value": -4.165188052198927}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.44954726638336}}, "branch_attrs": {"mutations": {}}}, {"name": "Switzerland/GE-SNRCI-29933895/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1543715846994, "confidence": [2020.1543715846994, 2020.1543715846994]}, "tsne_x": {"value": -12.023350199680328}, "umap_x": {"value": -3.4913251}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.18899}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.582088801674146}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.046790136195266}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.6805286487449247}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Geneva"}, "mds2": {"value": 0.940457998311794}, "mds3": {"value": -4.159114548651022}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.58488344720576}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001240", "node_attrs": {"div": 8, "num_date": {"value": 2020.2150385687917, "confidence": [2020.1645783241595, 2020.306158281809]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001186", "node_attrs": {"div": 9, "num_date": {"value": 2020.3274541023263, "confidence": [2020.2241511062105, 2020.4302560576866]}}, "branch_attrs": {"mutations": {"nuc": ["C21646T"]}}, "children": [{"name": "Peru/PE-LMA-UW21011876911/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.0479452054794, "confidence": [2021.0479452054794, 2021.0479452054794]}, "tsne_x": {"value": -10.966149771263863}, "umap_x": {"value": 1.5180366}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.0477037}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.019072074978624}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.043387237324772}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.82087976193611}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -16.72943504108613}, "mds3": {"value": -14.777298495212646}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.10502946231709}}, "branch_attrs": {"mutations": {"nuc": ["C10525T", "G12892A", "C13326T", "T14700C", "C17766T", "C18654T", "C18828T", "C19374T", "C20199T", "C20544T", "A25174G", "C25578T", "G27390T", "C27707T", "C27998T", "C29218T", "G29692T"]}}}, {"name": "OA970233", "node_attrs": {"div": 13, "num_date": {"value": 2020.5396174863388, "confidence": [2020.5396174863388, 2020.5396174863388]}, "tsne_x": {"value": -11.395617587682244}, "umap_x": {"value": -1.9521677}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.348426}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.036019589129926}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.818051873722508}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.5204246936012666}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Northern Ireland"}, "mds2": {"value": 0.7167374060150471}, "mds3": {"value": -7.265367917946164}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1206881003828242}}, "branch_attrs": {"mutations": {"nuc": ["G3242A", "G8120C", "A24205T", "G28083T"]}}}]}, {"name": "NODE_0001242", "node_attrs": {"div": 8, "num_date": {"value": 2020.2332137330716, "confidence": [2020.1857829373173, 2020.3094726325683]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001179", "node_attrs": {"div": 9, "num_date": {"value": 2020.4128518396017, "confidence": [2020.2317178860096, 2020.659263623622]}}, "branch_attrs": {"mutations": {"nuc": ["A23756G"], "S": ["T732A"]}, "labels": {"aa": "S: T732A"}}, "children": [{"name": "USA/CO-CDPHE-2011102321/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8565573770493, "confidence": [2020.8565573770493, 2020.8565573770493]}, "tsne_x": {"value": -11.441159967412748}, "umap_x": {"value": -0.18032461}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.867465}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.226591476460653}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.401498267880346}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.599785118825676}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "USA"}, "mds2": {"value": -0.7355232488474022}, "mds3": {"value": -13.43009696898168}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.593875929741535}}, "branch_attrs": {"mutations": {"nuc": ["C1288T", "G4300T", "A7479G", "G19947T", "A21551T", "G25726T", "G28899T", "C29835T"]}}}, {"name": "NODE_0001244", "node_attrs": {"div": 9, "num_date": {"value": 2020.4190915550848, "confidence": [2020.2478991939352, 2020.6759636251447]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AZ-CDC-LC0018790/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_x": {"value": -11.243659056201048}, "umap_x": {"value": 1.3075267}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.3092413}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.280231311195821}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.965774365003316}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.373938913922856}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Arizona"}, "mds2": {"value": -14.334867795394674}, "mds3": {"value": -13.238650298964682}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.751948747840853}}, "branch_attrs": {"mutations": {"nuc": ["C1613T", "C3543T", "A4838G", "G7027T", "C7164T", "C8127T", "C9559T", "G11083T", "C19170T", "G22104T", "A24129G", "C25844T", "T27210C", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "C27998T"], "S": ["G181V", "N856S"]}, "labels": {"aa": "S: G181V, N856S"}}}, {"name": "USA/CA-CDPH-2000014231/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.9521857923498, "confidence": [2020.9521857923498, 2020.9521857923498]}, "tsne_x": {"value": -10.580730706056894}, "umap_x": {"value": 1.1479661}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.5033827}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.668768336736212}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.316"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.980670883616495}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.622988964322747}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "USA"}, "mds2": {"value": 16.503161874147533}, "mds3": {"value": -7.817799337285773}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.671795971580927}}, "branch_attrs": {"mutations": {"nuc": ["C3411T", "G3871T", "A5040G", "C5497T", "C12043T", "A12519G", "C16111T", "T16539C", "C21757T", "A22759G", "G23593C", "G23756T", "T26504C", "G29751T"], "S": ["Q677H", "A732S"]}, "labels": {"aa": "S: Q677H, A732S"}}}]}]}, {"name": "NODE_0001245", "node_attrs": {"div": 8, "num_date": {"value": 2020.2414736186481, "confidence": [2020.1933239146808, 2020.3185108321366]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001246", "node_attrs": {"div": 8, "num_date": {"value": 2020.2488500314041, "confidence": [2020.1955062445224, 2020.3208608923062]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MEX/MEX-121/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3210382513662, "confidence": [2020.3210382513662, 2020.3210382513662]}, "tsne_x": {"value": -11.63527606669097}, "umap_x": {"value": -2.8877034}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.458666}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.2382875210516735}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.65310958736466}, "country": {"value": "Mexico"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.0000970196508367}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mexico"}, "mds2": {"value": 1.5696245138921503}, "mds3": {"value": -5.812940084133837}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.204026994511532}}, "branch_attrs": {"mutations": {"nuc": ["G1135T", "A2024G", "C2695T", "A29871C"]}}}, {"name": "NODE_0001247", "node_attrs": {"div": 8, "num_date": {"value": 2020.2643730662116, "confidence": [2020.1970179442592, 2020.3248608714605]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5244/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3265027322404, "confidence": [2020.3265027322404, 2020.3265027322404]}, "tsne_x": {"value": -11.564173767852871}, "umap_x": {"value": -2.1369674}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5230107}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.890405847331061}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.459"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.696899924750824}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.2319695119893828}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 3.754837665818596}, "mds3": {"value": -6.709778469921162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.381803753486838}}, "branch_attrs": {"mutations": {"nuc": ["C14053T", "C16971T", "A21137G", "C24099T"], "S": ["A846V"]}, "labels": {"aa": "S: A846V"}}}, {"name": "NODE_0001174", "node_attrs": {"div": 9, "num_date": {"value": 2020.4802451581209, "confidence": [2020.2140211920162, 2020.8085878261077]}}, "branch_attrs": {"mutations": {"nuc": ["C28905T"]}}, "children": [{"name": "CHN/LA-5031/2021", "node_attrs": {"div": 16, "num_date": {"value": 2021.36301369863, "confidence": [2021.36301369863, 2021.36301369863]}, "tsne_x": {"value": -9.900660408369662}, "umap_x": {"value": -0.48552167}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.9602084}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.9579544206494575}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.317"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.986589329817}, "country": {"value": "China"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.96753528152747}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Anhui"}, "mds2": {"value": 5.566121501813627}, "mds3": {"value": -9.720624317888538}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.92059945697613}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "C2091T", "C2156T", "C2836T", "A8360G", "C13860T", "G19999T"]}}}, {"name": "NZL/21CV0049/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0232876712328, "confidence": [2021.0232876712328, 2021.0232876712328]}, "tsne_x": {"value": -14.8655536592243}, "umap_x": {"value": 1.0180752}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.6482425}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.003324999603253}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.317"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.436876019391526}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.630329790496326}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Canterbury"}, "mds2": {"value": 5.457335779803461}, "mds3": {"value": -15.000635008573797}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1222418448655168}}, "branch_attrs": {"mutations": {"nuc": ["G872A", "A2031G", "C2445T", "C3876T", "G7452T", "A7863G", "T13090C", "T21644C", "G21974T", "G22992A", "G23126T", "A23586G", "G24095T"], "S": ["Y28H", "D138Y", "S477N", "A522S", "Q675R", "A845S"]}, "labels": {"aa": "S: Y28H, D138Y, S477N, A522S, Q675R, A845S"}}}]}]}]}, {"name": "NODE_0001249", "node_attrs": {"div": 8, "num_date": {"value": 2020.3210331822477, "confidence": [2020.1440993319015, 2020.3641010846015]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S2302/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4467213114754, "confidence": [2020.4467213114754, 2020.4467213114754]}, "tsne_x": {"value": -11.762579306397347}, "umap_x": {"value": -1.7165108}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.515401}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.723243134510922}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.291"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.02214581255498}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.650731153966322}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Washington"}, "mds2": {"value": 2.708720722345009}, "mds3": {"value": -7.889127645583236}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -13.052248342909248}}, "branch_attrs": {"mutations": {"nuc": ["G8075A", "A12199G", "C15933T", "G16968T", "C29784T"]}}}, {"name": "NODE_0001254", "node_attrs": {"div": 8, "num_date": {"value": 2020.410470358748, "confidence": [2020.2414306144908, 2020.5335708105413]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-DSHS-4603/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.5642076502731, "confidence": [2020.5642076502731, 2020.5642076502731]}, "tsne_x": {"value": -11.990883381401517}, "umap_x": {"value": -3.4440944}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.210281}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.742476119171962}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.149012829124947}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.4766231103193417}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Texas"}, "mds2": {"value": 1.087444699301098}, "mds3": {"value": -4.57166622754789}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.712697974780191}}, "branch_attrs": {"mutations": {"nuc": ["C66T"]}}}, {"name": "NODE_0001255", "node_attrs": {"div": 8, "num_date": {"value": 2020.4137253196895, "confidence": [2020.255705388654, 2020.5471753900813]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA974901", "node_attrs": {"div": 17, "num_date": {"value": 2020.6079234972678, "confidence": [2020.6079234972678, 2020.6079234972678]}, "tsne_x": {"value": -10.940155635520064}, "umap_x": {"value": -0.6620419}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.976528}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.431535394580872}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.697147975958842}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.925773473468978}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.9438719484339884}, "mds3": {"value": -10.117696252553356}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.8809806860117453}}, "branch_attrs": {"mutations": {"nuc": ["C274T", "A2501G", "C6395T", "G10565C", "G11804A", "A12410G", "A18366G", "C18788T", "T21093C"]}}}, {"name": "NODE_0001256", "node_attrs": {"div": 8, "num_date": {"value": 2020.481245494818, "confidence": [2020.2474486888075, 2020.6722786430635]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-25681/2021", "node_attrs": {"div": 15, "num_date": {"value": 2021.0534246575342, "confidence": [2021.0534246575342, 2021.0534246575342]}, "tsne_x": {"value": -11.11893390994126}, "umap_x": {"value": -0.45269275}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.93169}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.737436102062632}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.822464176117006}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.420050948395328}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "California"}, "mds2": {"value": 2.621739224370016}, "mds3": {"value": -9.478598747448832}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.488857589190259}}, "branch_attrs": {"mutations": {"nuc": ["T2201A", "C5822T", "G8861T", "G10282A", "C25585T", "C27884T", "C29466T"]}}}, {"name": "NODE_0001187", "node_attrs": {"div": 20, "num_date": {"value": 2020.9384096933284, "confidence": [2020.785320775406, 2021.0508640717062]}}, "branch_attrs": {"mutations": {"nuc": ["C14340T", "G17551A", "C18877T", "A19167G", "C19274A", "G22017T", "G23012A", "G23868T", "T26604C", "C27213T", "A28271-", "C28833T", "G29527T"], "S": ["W152L", "E484K", "G769V"]}, "labels": {"aa": "S: W152L, E484K, G769V"}}, "children": [{"name": "SLE/nmimr-SLE-SARS-CoV-2-SLSEQ073/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.0972602739726, "confidence": [2021.0972602739726, 2021.0972602739726]}, "tsne_x": {"value": -10.12196702506374}, "umap_x": {"value": 1.3803607}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.2361944}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.657428480195655}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.39946258099824}, "country": {"value": "Sierra Leone"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.789855195290237}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Sierra Leone"}, "mds2": {"value": 21.306666841928863}, "mds3": {"value": -6.220673775975564}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 9.235494848146065}}, "branch_attrs": {"mutations": {"nuc": ["T4579A", "T8392A", "G21800T", "T25713C"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}}, {"name": "NODE_0001258", "node_attrs": {"div": 20, "num_date": {"value": 2020.9923898789227, "confidence": [2020.7844518711722, 2021.0561643835617]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner390/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0561643835617, "confidence": [2021.0561643835617, 2021.0561643835617]}, "tsne_x": {"value": -10.123862970508611}, "umap_x": {"value": 0.99137473}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.67374}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.4932348703659604}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.39813532115762}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.961949785770637}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": 18.9556125926308}, "mds3": {"value": -6.1011884467406095}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.7405088972107685}}, "branch_attrs": {"mutations": {"nuc": ["G6358T", "A23056G"]}}}, {"name": "NODE_0001259", "node_attrs": {"div": 20, "num_date": {"value": 2020.9930503540056, "confidence": [2020.792704132023, 2021.0803139091745]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0186/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.1849315068494, "confidence": [2021.1849315068494, 2021.1849315068494]}, "tsne_x": {"value": -10.121156144773073}, "umap_x": {"value": 1.4361593}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.1779757}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 42.90029327300593}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.39951490950912}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 13.460163173949232}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "New Zealand"}, "mds2": {"value": 23.03030364580605}, "mds3": {"value": -5.136205173959882}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 4.873412149631005}}, "branch_attrs": {"mutations": {"nuc": ["C2334T", "C7164T", "C12049T", "C23996T", "T26076C", "G29745T"], "S": ["P812S"]}, "labels": {"aa": "S: P812S"}}}, {"name": "NZL/21MV0426/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.390410958904, "confidence": [2021.390410958904, 2021.390410958904]}, "tsne_x": {"value": -10.11087502276813}, "umap_x": {"value": 1.6912059}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -1.8512652}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.7262803114983685}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.421250441302483}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 23.73867438621194}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "New Zealand"}, "mds2": {"value": 30.226634793537187}, "mds3": {"value": -3.4801683816708}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 11.035071965882842}}, "branch_attrs": {"mutations": {"nuc": ["C6651T", "G7936T", "C9979T", "C11704T", "A15860G", "C16208A", "C18804T", "G19846T", "A23813G", "C25521T", "A27440G", "A29371C"], "S": ["N751D"]}, "labels": {"aa": "S: N751D"}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001087", "node_attrs": {"div": 7, "num_date": {"value": 2020.133284722164, "confidence": [2020.0986605593216, 2020.1695164464222]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001095", "node_attrs": {"div": 7, "num_date": {"value": 2020.1811976319582, "confidence": [2020.124966234146, 2020.1871584699454]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GRC/238_31927/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1871584699454, "confidence": [2020.1871584699454, 2020.1871584699454]}, "tsne_x": {"value": -12.142982837436112}, "umap_x": {"value": -3.3738506}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2619457}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.176160571204298}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.808991519379513}, "country": {"value": "Greece"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.871884016413728}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Athens"}, "mds2": {"value": 0.832384529421588}, "mds3": {"value": -4.092783144605139}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.124541567271274}}, "branch_attrs": {"mutations": {}}}, {"name": "TWN/CGMH-CGU-12/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_x": {"value": -12.192249998333152}, "umap_x": {"value": -3.504775}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.183706}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.924618011670897}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.823096461466411}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.728622014821804}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Taiwan"}, "mds2": {"value": 0.8565558859918869}, "mds3": {"value": -4.17290509315457}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.80108918596697}}, "branch_attrs": {"mutations": {"nuc": ["G23856T"], "S": ["R765L"]}, "labels": {"aa": "S: R765L"}}}]}, {"name": "NODE_0001260", "node_attrs": {"div": 7, "num_date": {"value": 2020.134102662835, "confidence": [2020.1018751570873, 2020.1745657333115]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001088", "node_attrs": {"div": 8, "num_date": {"value": 2020.1589617775066, "confidence": [2020.1395953141755, 2020.1847847809004]}}, "branch_attrs": {"mutations": {"nuc": ["C27046T"]}}, "children": [{"name": "THA/CONI-0195/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_x": {"value": -12.235070750913232}, "umap_x": {"value": -3.149475}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3266487}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 45.19575166567437}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.377957938456268}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.270816701776361}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangkok"}, "mds2": {"value": 1.0629510371971624}, "mds3": {"value": -4.934816439177687}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.360074062905737}}, "branch_attrs": {"mutations": {"nuc": ["G28557T", "C29666T"]}}}, {"name": "NODE_0001262", "node_attrs": {"div": 8, "num_date": {"value": 2020.1677864407793, "confidence": [2020.1441813309323, 2020.1857333353882]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC720/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_x": {"value": -12.30217195936076}, "umap_x": {"value": -2.806976}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.397623}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.751441825096109}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.125405556686571}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.262266442359539}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Victoria"}, "mds2": {"value": 0.8316089942892376}, "mds3": {"value": -4.888876941214816}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.646106479364038}}, "branch_attrs": {"mutations": {"nuc": ["C1514T"]}}}, {"name": "NODE_0001090", "node_attrs": {"div": 9, "num_date": {"value": 2020.1871584699454, "confidence": [2020.1751237981618, 2020.1871584699454]}}, "branch_attrs": {"mutations": {"nuc": ["C20031A"]}}, "children": [{"name": "OX659480", "node_attrs": {"div": 12, "num_date": {"value": 2020.3811475409836, "confidence": [2020.3811475409836, 2020.3811475409836]}, "tsne_x": {"value": -12.18579324630065}, "umap_x": {"value": -2.9649682}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.416691}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 48.50443277853847}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.592933585048138}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 0.3092437688531895}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.002425265634546}, "mds3": {"value": -4.535056796436531}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -20.24751836385016}}, "branch_attrs": {"mutations": {"nuc": ["A1422G", "C22009T", "C27879T"]}}}, {"name": "FR996364", "node_attrs": {"div": 9, "num_date": {"value": 2020.1871584699454, "confidence": [2020.1871584699454, 2020.1871584699454]}, "tsne_x": {"value": -12.157839927437015}, "umap_x": {"value": -3.500361}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2055335}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.22006960638745}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.018189655183845}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 1.8841360829402392}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.8808198395520962}, "mds3": {"value": -4.471155433250372}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8827658753316333}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001264", "node_attrs": {"div": 7, "num_date": {"value": 2020.160170464131, "confidence": [2020.0977579565329, 2020.217213114754]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/P4-7/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_x": {"value": -12.132693076108854}, "umap_x": {"value": -3.1654513}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.330227}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.291490556493828}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.808961029329442}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.971763362382397}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Saitama"}, "mds2": {"value": 0.8491022466275524}, "mds3": {"value": -4.440965315931477}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.594931076406755}}, "branch_attrs": {"mutations": {"nuc": ["C23248T"]}}}, {"name": "NODE_0001222", "node_attrs": {"div": 9, "num_date": {"value": 2020.20298223001, "confidence": [2020.1690185138643, 2020.2703610609656]}}, "branch_attrs": {"mutations": {"nuc": ["G10097A", "C23731T"]}}, "children": [{"name": "NODE_0001223", "node_attrs": {"div": 15, "num_date": {"value": 2020.4571759730438, "confidence": [2020.4097368325736, 2020.4795081967213]}}, "branch_attrs": {"mutations": {"nuc": ["C1968T", "G3483T", "T10992C", "C11001T", "C25714T", "G28580T"]}}, "children": [{"name": "OX469159", "node_attrs": {"div": 16, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_x": {"value": -13.911313105473704}, "umap_x": {"value": -0.2621469}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.7768316}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0384037379181565}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.369"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.112978338930516}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.331883917912265}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.773676662011323}, "mds3": {"value": -11.445422622587747}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1188313199304437}}, "branch_attrs": {"mutations": {"nuc": ["A25201C"]}}}, {"name": "OX471018", "node_attrs": {"div": 15, "num_date": {"value": 2020.5642076502731, "confidence": [2020.5642076502731, 2020.5642076502731]}, "tsne_x": {"value": -13.916676636294213}, "umap_x": {"value": -0.75071734}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.0706577}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.769598430209771}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.369"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.133655117518671}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.849964294458068}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 5.460883723201859}, "mds3": {"value": -9.03942900280672}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0189459051630751}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001224", "node_attrs": {"div": 11, "num_date": {"value": 2020.2428169188527, "confidence": [2020.210615723237, 2020.3137297254195]}}, "branch_attrs": {"mutations": {"nuc": ["C4002T", "C13536T"]}}, "children": [{"name": "NODE_0001110", "node_attrs": {"div": 11, "num_date": {"value": 2020.2494775398106, "confidence": [2020.2183543657873, 2020.3179697378089]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA981621", "node_attrs": {"div": 14, "num_date": {"value": 2020.4521857923498, "confidence": [2020.4521857923498, 2020.4521857923498]}, "tsne_x": {"value": -15.20566534220375}, "umap_x": {"value": -1.8287573}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.292431}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.022217683174813}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.121701602841297}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.1685649339469286}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.001995872322169}, "mds3": {"value": -8.35171803346986}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1285422931828245}}, "branch_attrs": {"mutations": {"nuc": ["G2447T", "C18115T", "G22199T"], "S": ["V213L"]}, "labels": {"aa": "S: V213L"}}}, {"name": "PER/covper046/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.3428961748634, "confidence": [2020.3428961748634, 2020.3428961748634]}, "tsne_x": {"value": -14.812955212566983}, "umap_x": {"value": 0.18234323}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.4533005}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.354975101286644}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.124397639892328}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.110574979349478}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 10.808514880154332}, "mds3": {"value": -9.034010084886091}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.83512442272605}}, "branch_attrs": {"mutations": {"nuc": ["C601T", "C5700T", "C14676T", "G14829T", "G19735T", "C22329T", "A22330T"], "S": ["S256F"]}, "labels": {"aa": "S: S256F"}}}]}, {"name": "NODE_0001268", "node_attrs": {"div": 11, "num_date": {"value": 2020.2499788938978, "confidence": [2020.2218823912563, 2020.3224355646528]}}, "branch_attrs": {"mutations": {"nuc": ["C29675-"]}}, "children": [{"name": "PER/covper045/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_x": {"value": -15.18237356572762}, "umap_x": {"value": -1.0752794}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.24889}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.910129818036774}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.101706886463296}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.604914672707296}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 5.387203954703538}, "mds3": {"value": -7.363836873792279}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.793183350878607}}, "branch_attrs": {"mutations": {"nuc": ["G13213A", "C19164T", "C25460T"]}}}, {"name": "NODE_0001269", "node_attrs": {"div": 11, "num_date": {"value": 2020.2873321871073, "confidence": [2020.1768048542028, 2020.334967576182]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001227", "node_attrs": {"div": 12, "num_date": {"value": 2020.3592057515527, "confidence": [2020.2740144121865, 2020.4257803486805]}}, "branch_attrs": {"mutations": {"nuc": ["G21786T"], "S": ["G75V"]}, "labels": {"aa": "S: G75V"}}, "children": [{"name": "PER/covper016/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5040983606557, "confidence": [2020.5040983606557, 2020.5040983606557]}, "tsne_x": {"value": -15.228691089864066}, "umap_x": {"value": -0.5202564}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.951933}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.87680552158551}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "C.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.01073798172142}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.772756976998337}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 0.1603106220688608}, "mds3": {"value": -9.977995949589362}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.808634840757414}}, "branch_attrs": {"mutations": {"nuc": ["C3241A", "C7165T", "C14877T", "C25658T"]}}}, {"name": "NODE_0001228", "node_attrs": {"div": 28, "num_date": {"value": 2020.950021601792, "confidence": [2020.886159946522, 2021.0443014501484]}}, "branch_attrs": {"mutations": {"nuc": ["C7124T", "T7424G", "C9857T", "T9867C", "C10029T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "C21789T", "G22299-", "A22300-", "A22301-", "G22302-", "T22303-", "T22304-", "A22305-", "T22306-", "T22307-", "T22308-", "G22309-", "A22310-", "C22311-", "T22312-", "C22313-", "C22314-", "T22315-", "G22316-", "G22317-", "T22318-", "G22319-", "T22917A", "T23031C", "C24138A", "C26894T", "C28253T", "A28271T", "C28311T", "G28913T", "C29311T", "C29370T", "-29675C"], "S": ["T76I", "R246X", "S247-", "Y248-", "L249-", "T250-", "P251-", "G252-", "D253X", "L452Q", "F490S", "T859N", "*1274X"]}, "labels": {"aa": "S: T76I, R246X, S247-, Y248-, L249-, T250-, P251-, G252-, D253X, L452Q, F490S, T859N, *1274X"}}, "children": [{"name": "PER/un-CDC-4051673-001/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.058904109589, "confidence": [2021.058904109589, 2021.058904109589]}, "tsne_x": {"value": -17.106649888634262}, "umap_x": {"value": 1.7357037}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "umap_y": {"value": -2.372283}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.7637744549678119}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.431873171235337}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.5222854279445297}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 30.56188462477238}, "mds3": {"value": -0.3780908467017446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -3.8707075308099017}}, "branch_attrs": {"mutations": {"nuc": ["C7594T"]}}}, {"name": "NODE_0001272", "node_attrs": {"div": 28, "num_date": {"value": 2020.9911352534034, "confidence": [2020.8889526513728, 2021.0360900730388]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Peru/PE-LMA-UW21012257716/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.058904109589, "confidence": [2021.058904109589, 2021.058904109589]}, "tsne_x": {"value": -17.110108649362044}, "umap_x": {"value": 1.5658299}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "umap_y": {"value": -1.9868209}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.917828285900299}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.43045938359465}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.291169430035843}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -5.969081510637752}, "mds3": {"value": -19.463440422754434}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 28.48265654211254}}, "branch_attrs": {"mutations": {"nuc": ["C21530G", "T21534A", "G21535T", "A21536C"]}}}, {"name": "NODE_0001273", "node_attrs": {"div": 28, "num_date": {"value": 2021.017910225339, "confidence": [2020.896546299675, 2021.0713964048796]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Peru/PE-LMA-UW21021264021/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1164383561643, "confidence": [2021.1164383561643, 2021.1164383561643]}, "tsne_x": {"value": -17.10766520194141}, "umap_x": {"value": 1.546144}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "umap_y": {"value": -1.9678626}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.915543652526065}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.43166936235448}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -23.228246437394727}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -6.128290459027381}, "mds3": {"value": -19.33199417743461}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 28.4812359181588}}, "branch_attrs": {"mutations": {"nuc": ["A3569G", "C10582T", "C17985T", "A29700G"]}}}, {"name": "NODE_0001274", "node_attrs": {"div": 28, "num_date": {"value": 2021.1383561643836, "confidence": [2021.0680507130112, 2021.1383561643836]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/un-CDC-4051692-001/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1383561643836, "confidence": [2021.1383561643836, 2021.1383561643836]}, "tsne_x": {"value": -17.105718976586445}, "umap_x": {"value": 1.6617069}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "umap_y": {"value": -2.5547261}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.5750845997863288}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.431969109569232}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.533276712227455}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -7.931651713405341}, "mds3": {"value": -16.609996140779465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 0.8162640729623696}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001276", "node_attrs": {"div": 28, "num_date": {"value": 2021.1841699112988, "confidence": [2021.0918755976081, 2021.2421118860598]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-CDC-QDX26598609/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_x": {"value": -17.110425184652666}, "umap_x": {"value": 1.6841526}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "umap_y": {"value": -2.5985143}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.29588793817509}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.430401316421316}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.4936910604606275}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Florida"}, "mds2": {"value": 26.750150876391395}, "mds3": {"value": 1.2030258272558554}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 2.0817122954323555}}, "branch_attrs": {"mutations": {"nuc": ["G210T", "T19381G", "G25720T", "G28628C"]}}}, {"name": "Peru/PE-LMA-UW21033074857/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.2424657534248, "confidence": [2021.2424657534248, 2021.2424657534248]}, "tsne_x": {"value": -17.11131370717462}, "umap_x": {"value": 1.7081066}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "umap_y": {"value": -2.1674469}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.937835505787978}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.431211716182796}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.66724233330781}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 31.95670239979093}, "mds3": {"value": 1.3603242971560496}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 28.44306667770477}}, "branch_attrs": {"mutations": {"nuc": ["C14184T", "-22299A", "-22317G", "-22318T", "-22319A"], "S": ["-252X", "X253N"]}, "labels": {"aa": "S: -252X, X253N"}}}]}]}]}]}]}]}, {"name": "NODE_0001277", "node_attrs": {"div": 11, "num_date": {"value": 2020.3195121753415, "confidence": [2020.175710704029, 2020.3427779522872]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001278", "node_attrs": {"div": 11, "num_date": {"value": 2020.3220205383398, "confidence": [2020.1802124487465, 2020.3495168404268]}}, "branch_attrs": {"mutations": {"nuc": ["-29675C"]}}, "children": [{"name": "NODE_0001280", "node_attrs": {"div": 11, "num_date": {"value": 2020.3317352361896, "confidence": [2020.1814006156142, 2020.3530626439447]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0419/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -15.186562198866705}, "umap_x": {"value": -1.9105511}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.3452883}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.887444679117862}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "C.26"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.126959086346693}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.5724254582143612}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 1.8799583093293089}, "mds3": {"value": -7.615678730631108}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.610727272073609}}, "branch_attrs": {"mutations": {"nuc": ["T8278C", "G12661A"]}}}, {"name": "NODE_0001225", "node_attrs": {"div": 15, "num_date": {"value": 2020.41095409379, "confidence": [2020.373511350342, 2020.41817458276]}}, "branch_attrs": {"mutations": {"nuc": ["C12534T", "G23593T", "C28846T", "G28908T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}, "children": [{"name": "EGY/CUNCI-HGC6I002/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_x": {"value": -15.362327989337166}, "umap_x": {"value": -0.47734457}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.9432054}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.139650226293333}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "C.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.217461105519252}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.151946896270381}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Egypt"}, "mds2": {"value": 1.4894107299155506}, "mds3": {"value": -10.398986175433231}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.739017502213464}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/CUNCI-HGC6I026/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_x": {"value": -15.393872242193224}, "umap_x": {"value": -0.35568592}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.8579354}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.58326315707599}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.220797518585313}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.11058542304033}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Egypt"}, "mds2": {"value": 1.1240740484867808}, "mds3": {"value": -11.761820457284577}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.490698651626294}}, "branch_attrs": {"mutations": {"nuc": ["C9967T"]}}}]}]}, {"name": "NODE_0001234", "node_attrs": {"div": 12, "num_date": {"value": 2020.411201399894, "confidence": [2020.2537359933683, 2020.4999773460393]}}, "branch_attrs": {"mutations": {"nuc": ["C12488T"]}}, "children": [{"name": "PER/un-CDC-3958043-001/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6352459016393, "confidence": [2020.6352459016393, 2020.6352459016393]}, "tsne_x": {"value": -15.38995838752971}, "umap_x": {"value": 0.34215355}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.3068175}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.360998167145658}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.501491059714608}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.243872020181524}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 0.5223098685088857}, "mds3": {"value": -13.775356683176891}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.088746195847865}}, "branch_attrs": {"mutations": {"nuc": ["T209C", "C292T", "T3343C", "C5849A", "G21468T", "C26082T"]}}}, {"name": "NODE_0001235", "node_attrs": {"div": 18, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7105259057298, 2020.7609289617487]}}, "branch_attrs": {"mutations": {"nuc": ["C1960T", "T3682C", "C12970T", "C17676T", "C23854T", "G29254T"]}}, "children": [{"name": "PER/un-CDC-4033329-001/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_x": {"value": -15.746155270391062}, "umap_x": {"value": -0.503484}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.965681}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.5895373508556165}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.81182129415695}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.018140537456653}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -1.7289315630242932}, "mds3": {"value": -12.875599249597132}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.7363705546002834}}, "branch_attrs": {"mutations": {}}}, {"name": "PER/un-CDC-4033364-001/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7882513661202, "confidence": [2020.7882513661202, 2020.7882513661202]}, "tsne_x": {"value": -15.744029986682351}, "umap_x": {"value": -0.5709394}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.063194}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.685419795079223}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.806111515780886}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.996683988751469}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -1.8122064678834369}, "mds3": {"value": -12.330535229618064}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.075542752849868}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001284", "node_attrs": {"div": 11, "num_date": {"value": 2020.3319665317633, "confidence": [2020.262728127876, 2020.4395097696574]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper019/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5040983606557, "confidence": [2020.5040983606557, 2020.5040983606557]}, "tsne_x": {"value": -15.181981819242813}, "umap_x": {"value": -1.8362054}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.349814}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.90992835419121}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.10121205294525}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.2580364300258425}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 3.463501835365759}, "mds3": {"value": -6.861273117474173}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.793082005450657}}, "branch_attrs": {"mutations": {"nuc": ["C583T", "A17521G"]}}}, {"name": "NODE_0001285", "node_attrs": {"div": 11, "num_date": {"value": 2020.3591824043765, "confidence": [2020.262763187082, 2020.4424210723698]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper024/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5068306010928, "confidence": [2020.5068306010928, 2020.5068306010928]}, "tsne_x": {"value": -15.183073576722432}, "umap_x": {"value": -1.1803467}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.286117}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.90771375457359}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "C.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.101534107051451}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.743881348080749}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 5.468726669240163}, "mds3": {"value": -7.268228026099503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.79268643745881}}, "branch_attrs": {"mutations": {"nuc": ["C17436T", "G27478T", "G29179T"]}}}, {"name": "NODE_0001287", "node_attrs": {"div": 11, "num_date": {"value": 2020.398045954268, "confidence": [2020.2596939330012, 2020.4437405716785]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper009/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5013661202186, "confidence": [2020.5013661202186, 2020.5013661202186]}, "tsne_x": {"value": -15.212632197556536}, "umap_x": {"value": -0.37480718}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.864685}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.90892001942778}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.063419512898966}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.46689663353819}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 7.386825101462661}, "mds3": {"value": -8.151731559489821}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.79656582061227}}, "branch_attrs": {"mutations": {"nuc": ["T2886C", "A5872G", "C6539T", "C9430T", "C11704T"]}}}, {"name": "NODE_0001289", "node_attrs": {"div": 11, "num_date": {"value": 2020.4246589608376, "confidence": [2020.2579942804275, 2020.5040983606557]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper001/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5040983606557, "confidence": [2020.5040983606557, 2020.5040983606557]}, "tsne_x": {"value": -15.151672779789074}, "umap_x": {"value": -2.0571811}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.515357}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.909857546543813}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.107838440976264}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.7598977045172268}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 3.56447569152996}, "mds3": {"value": -6.087694454906483}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.792843843184222}}, "branch_attrs": {"mutations": {"nuc": ["C442T"]}}}, {"name": "NODE_0001290", "node_attrs": {"div": 11, "num_date": {"value": 2020.4789772992544, "confidence": [2020.251034293554, 2020.533422983295]}}, "branch_attrs": {"mutations": {"nuc": ["-29675C"]}}, "children": [{"name": "PER/un-CDC-3958226-001/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.629781420765, "confidence": [2020.629781420765, 2020.629781420765]}, "tsne_x": {"value": -15.194814171060456}, "umap_x": {"value": -0.7239926}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -5.070112}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.381436686434281}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "C.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.087314009944356}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.241895245024601}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 4.184525010134868}, "mds3": {"value": -9.932594806863984}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.996361594764191}}, "branch_attrs": {"mutations": {"nuc": ["T2402G", "C10741T", "G24794T", "G29777T"], "S": ["A1078S"]}, "labels": {"aa": "S: A1078S"}}}, {"name": "NODE_0001292", "node_attrs": {"div": 11, "num_date": {"value": 2020.4817255303308, "confidence": [2020.25676259861, 2020.5524465911667]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/un-CDC-3959175-001/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6379781420765, "confidence": [2020.6379781420765, 2020.6379781420765]}, "tsne_x": {"value": -15.193901963150118}, "umap_x": {"value": -0.51143533}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.959774}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.365520464915919}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -13.148911476369443}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.709350540554167}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 1.195502284355318}, "mds3": {"value": -12.189716180118344}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.080249859760066}}, "branch_attrs": {"mutations": {"nuc": ["C25413T", "G25793T", "T25995C", "C27978T", "G29468C"]}}}, {"name": "NODE_0001293", "node_attrs": {"div": 11, "num_date": {"value": 2020.5072565388814, "confidence": [2020.2557729358373, 2020.5761798813498]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD903003", "node_attrs": {"div": 26, "num_date": {"value": 2020.886612021858, "confidence": [2020.886612021858, 2020.886612021858]}, "tsne_x": {"value": -14.94420874542795}, "umap_x": {"value": 1.4376566}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -3.1372268}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.017819464501544}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.56298649329673}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.148495323024685}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": -9.888982538608348}, "mds3": {"value": -23.12066731652138}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.1341289199290303}}, "branch_attrs": {"mutations": {"nuc": ["C832T", "C1302T", "G3004T", "C4890T", "C5031T", "G8353A", "T9289C", "C10615T", "C11653T", "C13665T", "C16338T", "C21575T", "C22326T", "G24781T", "C27513T"], "S": ["L5F", "S255F", "K1073N"]}, "labels": {"aa": "S: L5F, S255F, K1073N"}}}, {"name": "Peru/UW20112760093/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.905737704918, "confidence": [2020.905737704918, 2020.905737704918]}, "tsne_x": {"value": -15.246295343678272}, "umap_x": {"value": 0.47682735}, "Nextstrain_clade": {"value": "20D"}, "umap_y": {"value": -4.2336755}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.075797376704104}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "C.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "tsne_y": {"value": -12.695071184398422}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.293474373478033}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": -7.594355450803803}, "mds3": {"value": -14.132685877758552}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.08854941551336}}, "branch_attrs": {"mutations": {"nuc": ["C6196T", "C6636T", "C7101T", "C8016T", "T15492C", "C17876T", "C25889T", "C27208T", "C29722T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001248", "node_attrs": {"div": 8, "num_date": {"value": 2020.1856508161636, "confidence": [2020.1548929078415, 2020.2017484694122]}}, "branch_attrs": {"mutations": {"nuc": ["T27299C"]}}, "children": [{"name": "NODE_0001295", "node_attrs": {"div": 8, "num_date": {"value": 2020.418902723099, "confidence": [2020.2108431471459, 2020.4357923497269]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Argentina/UW20112452724/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_x": {"value": -12.13849935662316}, "umap_x": {"value": 0.5992686}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.1220713}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.076417009361538}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "N.5"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.80951359971515}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.49079040106438}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Argentina"}, "mds2": {"value": 12.734203222162348}, "mds3": {"value": -7.980274056822312}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.08203349268014}}, "branch_attrs": {"mutations": {"nuc": ["A298G", "C843T", "T1770G", "C2455T", "C3397T", "T7436C", "C10369T", "C17274T", "C17676T", "A22803G", "C25904T", "G29134A"], "S": ["Q414R"]}, "labels": {"aa": "S: Q414R"}}}, {"name": "CHL/Santiago-5120618/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_x": {"value": -12.331737014621767}, "umap_x": {"value": -3.5826879}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.123754}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.781965651313902}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.206034629369702}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.644888826587368}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 0.9738873959340972}, "mds3": {"value": -4.222248609776817}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.939450868991146}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001250", "node_attrs": {"div": 9, "num_date": {"value": 2020.2117486338798, "confidence": [2020.1911929567123, 2020.2117486338798]}}, "branch_attrs": {"mutations": {"nuc": ["T29148C"]}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0021/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_x": {"value": -12.641542285539153}, "umap_x": {"value": -2.8443325}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4134808}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.863394965905581}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -15.818822449595102}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.360347771456699}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 1.0542322899153975}, "mds3": {"value": -5.01503250990646}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.443986890623332}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001299", "node_attrs": {"div": 9, "num_date": {"value": 2020.21627231031, "confidence": [2020.1914677843083, 2020.2549501449198]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001279", "node_attrs": {"div": 11, "num_date": {"value": 2020.285041522654, "confidence": [2020.2272114175037, 2020.3232691382457]}}, "branch_attrs": {"mutations": {"nuc": ["C5365T", "G8137T"]}}, "children": [{"name": "CHL/Santiago-AAS3062/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.3346994535518, "confidence": [2020.3346994535518, 2020.3346994535518]}, "tsne_x": {"value": -13.085753926133266}, "umap_x": {"value": -1.9813142}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.419763}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.862701401577553}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.611255341234394}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.862693214166706}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 2.4459328970475043}, "mds3": {"value": -7.411083295241886}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.445772704043618}}, "branch_attrs": {"mutations": {"nuc": ["A15942G", "G25135T"], "S": ["K1191N"]}, "labels": {"aa": "S: K1191N"}}}, {"name": "CHL/Santiago-PUC_MVL_0511/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4002732240438, "confidence": [2020.4002732240438, 2020.4002732240438]}, "tsne_x": {"value": -13.166756807740622}, "umap_x": {"value": -1.8543264}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.310695}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.1632154277531805}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.67912733979927}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.1080736454047484}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 0.5568374134202346}, "mds3": {"value": -8.419549265612634}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 13.479375704141091}}, "branch_attrs": {"mutations": {"nuc": ["T241A", "C1263T", "C20234T"]}}}]}, {"name": "NODE_0001302", "node_attrs": {"div": 9, "num_date": {"value": 2020.2411981327937, "confidence": [2020.198528929805, 2020.3038435944288]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001275", "node_attrs": {"div": 10, "num_date": {"value": 2020.3237704918033, "confidence": [2020.280994469648, 2020.3237704918033]}}, "branch_attrs": {"mutations": {"nuc": ["A2475G"]}}, "children": [{"name": "CHL/Santiago-AMC0337/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_x": {"value": -12.797002911051452}, "umap_x": {"value": -3.0161355}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.37506}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.988099219997674}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.171785042881417}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.683859164747688}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 1.3026935804666386}, "mds3": {"value": -5.259704735772418}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.209799325817327}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001146", "node_attrs": {"div": 10, "num_date": {"value": 2020.3244861539486, "confidence": [2020.307703944524, 2020.3585070665342]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0526/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_x": {"value": -12.975702422757964}, "umap_x": {"value": -2.4649487}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5464993}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.2764099846557333}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.42677031453327}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.7740079323688364}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 2.704213033856368}, "mds3": {"value": -5.337391166504759}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 13.14375594515952}}, "branch_attrs": {"mutations": {"nuc": ["C6582T", "C28948T"]}}}, {"name": "NODE_0001304", "node_attrs": {"div": 10, "num_date": {"value": 2020.3607361248064, "confidence": [2020.331121649681, 2020.3620218579235]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0380/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -12.803540036022186}, "umap_x": {"value": -2.7101614}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4844}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.354764478797953}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.164261625627848}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.9498932924014447}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 1.3178694788610832}, "mds3": {"value": -5.487641164259951}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 14.95038330395204}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-5110605/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_x": {"value": -12.85940990301283}, "umap_x": {"value": -2.2098162}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.579657}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.779321320200662}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.266485464211797}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.2019679871205415}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 1.407537768398758}, "mds3": {"value": -6.272136888163622}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.94008784708482}}, "branch_attrs": {"mutations": {"nuc": ["C1108T"]}}}]}]}]}, {"name": "NODE_0001306", "node_attrs": {"div": 9, "num_date": {"value": 2020.2658482411855, "confidence": [2020.1805981412806, 2020.3125453259422]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001270", "node_attrs": {"div": 10, "num_date": {"value": 2020.410925000965, "confidence": [2020.2440661304524, 2020.5490244147868]}}, "branch_attrs": {"mutations": {"nuc": ["G26416T"]}}, "children": [{"name": "ARG/Cordoba-2858/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_x": {"value": -12.724066413171478}, "umap_x": {"value": -0.31312197}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.84488}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.847590730397503}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "N.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.93262650617276}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.85606981685416}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Argentina"}, "mds2": {"value": 2.209169057685637}, "mds3": {"value": -10.373227236376108}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.416966336836447}}, "branch_attrs": {"mutations": {"nuc": ["C2044T", "C10626T", "C11824T", "A22052C", "C26645T", "C29555T"], "S": ["N164H"]}, "labels": {"aa": "S: N164H"}}}, {"name": "NODE_0001271", "node_attrs": {"div": 12, "num_date": {"value": 2020.5317296899777, "confidence": [2020.4116955710651, 2020.6409570730527]}}, "branch_attrs": {"mutations": {"nuc": ["G3155T", "A4485G"]}}, "children": [{"name": "ARG/Cordoba-15977/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_x": {"value": -13.14105478999541}, "umap_x": {"value": 0.34099466}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.3677306}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.893313499881825}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "N.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -17.28509849227375}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.865141602741078}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Argentina"}, "mds2": {"value": 7.035654183870614}, "mds3": {"value": -11.502365215704016}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.611933342639606}}, "branch_attrs": {"mutations": {"nuc": ["C2502T", "C3429T", "G11083T", "G25244T", "C25708T", "T27995C", "C29625T"], "S": ["V1228L"]}, "labels": {"aa": "S: V1228L"}}}, {"name": "NODE_0001312", "node_attrs": {"div": 12, "num_date": {"value": 2020.5912971346177, "confidence": [2020.4210105763832, 2020.6727100748876]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARG/Cordoba-3719/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.717213114754, "confidence": [2020.717213114754, 2020.717213114754]}, "tsne_x": {"value": -13.076061148445644}, "umap_x": {"value": -0.68128365}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.0493274}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.976036904451793}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -17.129140416345408}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.864857072703335}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Argentina"}, "mds2": {"value": 3.06442162959966}, "mds3": {"value": -10.049788926888828}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.121056895739525}}, "branch_attrs": {"mutations": {"nuc": ["C7945T", "C9073T", "G17019T"]}}}, {"name": "ARG/Cordoba-973/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7062841530055, "confidence": [2020.7062841530055, 2020.7062841530055]}, "tsne_x": {"value": -13.05143207762364}, "umap_x": {"value": -1.7430536}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.402939}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.895930504130647}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "N.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.996424026931}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.034146591030815}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Argentina"}, "mds2": {"value": 3.666584838804953}, "mds3": {"value": -7.56517922958368}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.616922021176224}}, "branch_attrs": {"mutations": {"nuc": ["G9128C"]}}}]}]}]}, {"name": "NODE_0001314", "node_attrs": {"div": 9, "num_date": {"value": 2020.2892343144665, "confidence": [2020.1803143109678, 2020.3192990160692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-0312/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_x": {"value": -12.9443284486702}, "umap_x": {"value": -2.3122165}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.53613}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 41.5655296387752}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.411140559831086}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.349029923415445}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Florida"}, "mds2": {"value": 2.6421015065595146}, "mds3": {"value": -6.5111664520806745}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.712952656350993}}, "branch_attrs": {"mutations": {"nuc": ["C18647T", "C25916T", "C29769T"]}}}, {"name": "NODE_0001316", "node_attrs": {"div": 9, "num_date": {"value": 2020.313222250371, "confidence": [2020.1802068651034, 2020.319448397224]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001317", "node_attrs": {"div": 9, "num_date": {"value": 2020.3197318062678, "confidence": [2020.1893081377216, 2020.3282225971484]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/ICO1064/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_x": {"value": -12.80588030796961}, "umap_x": {"value": -2.5752506}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.532752}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.360378742791275}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.1392695846649}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.259914902696522}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.9948584438498574}, "mds3": {"value": -5.7671258565907175}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -16.937577428940727}}, "branch_attrs": {"mutations": {"nuc": ["C23029T", "C29857-", "T29858-", "T29859-", "A29860-", "G29861-", "G29862-", "A29863-", "G29864-", "A29865-", "A29866-", "T29867-", "G29868-", "A29869-", "C29870-", "A29871-", "A29872-", "A29873-"]}}}, {"name": "NODE_0001251", "node_attrs": {"div": 11, "num_date": {"value": 2020.4106020448507, "confidence": [2020.2577649365985, 2020.4554928623384]}}, "branch_attrs": {"mutations": {"nuc": ["C8293T", "A22720G"]}}, "children": [{"name": "BRA/HRMS_970/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_x": {"value": -13.79112148719267}, "umap_x": {"value": -0.6204408}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.027492}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.77476074502145}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -17.319053100097726}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.0336550588229356}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": 3.603964783743506}, "mds3": {"value": -10.582143911000127}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.600352435059}}, "branch_attrs": {"mutations": {"nuc": ["C2919T", "C9534T", "C21812A", "G27816T", "C29769T"], "S": ["L84I"]}, "labels": {"aa": "S: L84I"}}}, {"name": "NODE_0001252", "node_attrs": {"div": 15, "num_date": {"value": 2020.6325136612022, "confidence": [2020.5743794627765, 2020.6325136612022]}}, "branch_attrs": {"mutations": {"nuc": ["A5089G", "G11083T", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "G28380A", "C28775T"]}}, "children": [{"name": "URY/649_N.7_del12/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6325136612022, "confidence": [2020.6325136612022, 2020.6325136612022]}, "tsne_x": {"value": -14.325717355349296}, "umap_x": {"value": -0.5354397}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.9755206}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.841062839231196}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.13755334949353}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.849518142437924}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": 7.20838153842975}, "mds3": {"value": -7.556750038697844}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.948688297855953}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001253", "node_attrs": {"div": 16, "num_date": {"value": 2020.6829517172182, "confidence": [2020.6530738873157, 2020.699016228517]}}, "branch_attrs": {"mutations": {"nuc": ["G22249A"]}}, "children": [{"name": "URY/840_N.7_del12/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_x": {"value": -14.348892979577236}, "umap_x": {"value": -0.30993438}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.834326}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.2759522546157545}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.16320669093156}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.3441939766148598}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": 6.881583090756079}, "mds3": {"value": -8.7800789864236}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.588581014795587}}, "branch_attrs": {"mutations": {}}}, {"name": "URY/822_N.7_del12/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_x": {"value": -14.333248599177717}, "umap_x": {"value": -0.758411}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.081118}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.625487692131108}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.14491980102154}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.833286711271078}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -0.1591304171706822}, "mds3": {"value": -9.058707506388622}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.067795138352119}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001161", "node_attrs": {"div": 16, "num_date": {"value": 2020.7030551510145, "confidence": [2020.6742459211432, 2020.7512837825925]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/1021_N.7_del12/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_x": {"value": -14.348752988597026}, "umap_x": {"value": -0.28987837}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.798232}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.50821796513186}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.163206258369065}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.414676991019078}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": 8.781076830339074}, "mds3": {"value": -7.761920447391769}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.301946376565608}}, "branch_attrs": {"mutations": {"nuc": ["C13323A"]}}}, {"name": "URY/1102_N7_del12/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7909836065573, "confidence": [2020.7909836065573, 2020.7909836065573]}, "tsne_x": {"value": -14.35968931643768}, "umap_x": {"value": -0.043997217}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.635412}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.644410681456833}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.176219550310005}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.575466744827852}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -5.284416692713683}, "mds3": {"value": -12.179310457658168}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.292400169560596}}, "branch_attrs": {"mutations": {"nuc": ["C24919T"]}}}]}, {"name": "NODE_0001257", "node_attrs": {"div": 17, "num_date": {"value": 2020.7088780405104, "confidence": [2020.6853620864918, 2020.7090163934427]}}, "branch_attrs": {"mutations": {"nuc": ["C5646T", "T27685-", "C27686-", "T27687-", "C27688-", "C27689-", "A27690-", "A27691-", "T27692-", "T27693-", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-", "T27704-", "T27705-", "G27706-", "C27707-", "G27708-", "G27709-", "C27710-", "A27711-", "A27712-", "T27713-", "A27714-", "G27715-", "T27716-", "G27717-", "T27718-", "T27719-", "T27720-", "A27721-", "T27722-", "A27723-", "A27724-", "C27725-", "A27726-", "C27727-", "T27728-", "T27729-", "T27730-", "G27731-", "C27732-", "T27733-", "T27734-", "C27735-", "A27736-", "C27737-", "A27738-", "C27739-", "T27740-", "C27741-", "A27742-", "A27743-", "A27744-", "A27745-", "G27746-", "A27747-", "A27748-", "A27749-", "G27750-", "A27751-", "C27752-"]}}, "children": [{"name": "URY/839/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_x": {"value": -14.371838918719842}, "umap_x": {"value": 0.021224517}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6978984}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.593266240575585}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.190014472612127}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.6749716187603045}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -1.904243806585788}, "mds3": {"value": -10.681332495629182}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.08999125207317}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001322", "node_attrs": {"div": 17, "num_date": {"value": 2020.7254098360656, "confidence": [2020.7020071617867, 2020.7254098360656]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/899/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7254098360656, "confidence": [2020.7254098360656, 2020.7254098360656]}, "tsne_x": {"value": -14.363046727805102}, "umap_x": {"value": -0.037945375}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6822343}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.593266240575585}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.17942610487092}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.606235682254223}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -2.0765456028016}, "mds3": {"value": -10.39361612504281}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.08999125207317}}, "branch_attrs": {"mutations": {}}}, {"name": "URY/917/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7254098360656, "confidence": [2020.7254098360656, 2020.7254098360656]}, "tsne_x": {"value": -14.360316958969932}, "umap_x": {"value": -0.06832748}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.728863}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.593266240575585}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -18.1778498218131}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.5941232536375685}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -1.9709214877787065}, "mds3": {"value": -10.393507466588154}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.08999125207317}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}, {"name": "NODE_0001324", "node_attrs": {"div": 9, "num_date": {"value": 2020.3204084618558, "confidence": [2020.189990380042, 2020.3633151004651]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/58301/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4166666666667, "confidence": [2020.4166666666667, 2020.4166666666667]}, "tsne_x": {"value": -12.993162038913905}, "umap_x": {"value": -1.7604626}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.449923}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.8848469773661995}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.492510664018763}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.1825947993306365}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Rio de Janeiro"}, "mds2": {"value": 4.410458260445309}, "mds3": {"value": -6.203685708621704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.179577799728202}}, "branch_attrs": {"mutations": {"nuc": ["C4014T", "C4543T", "C21855T", "T27511-", "A27512-", "C27513-", "G27514-", "A27515-", "G27516-", "G27517-", "G27518-", "C27519-", "A27520-", "A27521-", "T27522-", "T27523-", "C27524-", "A27525-", "C27526-", "C27527-", "A27528-", "T27529-", "T27530-", "T27531-", "C27532-", "A27533-", "T27534-", "C27535-", "C27536-", "T27537-", "C27538-", "T27539-", "A27540-", "G27541-", "C27542-", "T27543-", "G27544-", "A27545-", "T27546-", "A27547-", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "A27624-", "C27625-", "G27626-", "T27627-", "G27628-", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "C27641-", "A27642-", "C27643-", "C27644-", "T27645-", "A27646-", "A27647-", "A27648-", "C27649-", "T27650-", "G27651-", "T27652-", "T27653-", "C27654-", "A27655-", "T27656-", "C27657-", "A27658-", "G27659-", "A27660-", "C27661-", "A27662-", "A27663-", "G27664-", "A27665-", "G27666-", "G27667-", "A27668-", "A27669-", "G27670-", "T27671-", "T27672-", "C27673-", "A27674-", "A27675-", "G27676-", "A27677-", "A27678-", "C27679-", "T27680-", "T27681-", "T27682-", "A27683-", "C27684-", "T27685-", "C27686-", "T27687-", "C27688-", "C27689-", "A27690-", "A27691-", "T27692-", "T27693-", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "C29635T"], "S": ["S98F"]}, "labels": {"aa": "S: S98F"}}}, {"name": "NODE_0001327", "node_attrs": {"div": 9, "num_date": {"value": 2020.3611398901767, "confidence": [2020.255508123011, 2020.5386877477504]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/16991/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_x": {"value": -13.036652853009535}, "umap_x": {"value": -1.6583416}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.412443}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.699015457327763}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.553416475313185}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.716486662834131}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Rio de Janeiro"}, "mds2": {"value": 5.451486733572144}, "mds3": {"value": -6.327929763646195}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.372523546474945}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "C4099T", "A12082T", "A24292G", "A27403-", "T27404-", "T27405-", "C27406-", "T27407-", "T27408-", "T27409-", "T27410-", "C27411-", "T27412-", "T27413-", "G27414-", "G27415-", "C27416-", "A27417-", "C27418-", "T27419-", "G27420-", "A27421-", "T27422-", "A27423-", "A27424-", "C27425-", "A27426-", "C27427-", "T27428-", "C27429-", "G27430-", "C27431-", "T27432-", "A27433-", "C27434-", "T27435-", "T27436-", "G27437-", "T27438-", "G27439-", "A27440-", "G27441-", "C27442-", "T27443-", "T27444-", "T27445-", "A27446-", "T27447-", "C27448-", "A27449-", "C27450-", "T27451-", "A27452-", "C27453-", "C27454-", "A27455-", "A27456-", "G27457-", "A27458-", "G27459-", "T27460-", "G27461-", "T27462-", "G27463-", "T27464-", "T27465-", "A27466-", "G27467-", "A27468-", "G27469-", "G27470-", "T27471-", "A27472-", "C27473-", "A27474-", "A27475-", "C27476-", "A27477-", "G27478-", "T27479-", "A27480-", "C27481-", "T27482-", "T27483-", "T27484-", "T27485-", "A27486-", "A27487-", "A27488-", "A27489-", "G27490-", "A27491-", "A27492-", "C27493-", "C27494-", "T27495-", "T27496-", "G27497-", "C27498-", "T27499-", "C27500-", "T27501-", "T27502-", "C27503-", "T27504-", "G27505-", "G27506-", "A27507-", "A27508-", "C27509-", "A27510-", "T27511-", "A27512-", "C27513-", "G27514-", "A27515-", "G27516-", "G27517-", "G27518-", "C27519-", "A27520-", "A27521-", "T27522-", "T27523-", "C27524-", "A27525-", "C27526-", "C27527-", "A27528-", "T27529-", "T27530-", "T27531-", "C27532-", "A27533-", "T27534-", "C27535-", "C27536-", "T27537-", "C27538-", "T27539-", "A27540-", "G27541-", "C27542-", "T27543-", "G27544-", "A27545-", "T27546-", "A27547-", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "A27624-", "C27625-", "G27626-", "T27627-", "G27628-", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "C27641-", "A27642-", "C27643-", "C27644-", "T27645-", "A27646-", "A27647-", "A27648-", "C27649-", "T27650-", "G27651-", "T27652-", "T27653-", "C27654-", "A27655-", "T27656-", "C27657-", "A27658-", "G27659-", "A27660-", "C27661-", "A27662-", "A27663-", "G27664-", "A27665-", "G27666-", "G27667-", "A27668-", "A27669-", "G27670-", "T27671-", "T27672-", "C27673-", "A27674-", "A27675-", "G27676-", "A27677-", "A27678-", "C27679-", "T27680-", "T27681-", "T27682-", "A27683-", "C27684-", "T27685-", "C27686-", "T27687-", "C27688-", "C27689-", "A27690-", "A27691-", "T27692-", "T27693-", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-", "T27704-", "T27705-", "G27706-", "C27707-", "G27708-", "G27709-", "C27710-", "A27711-", "A27712-", "T27713-", "A27714-", "G27715-", "T27716-", "G27717-", "T27718-", "T27719-", "T27720-", "A27721-", "T27722-", "A27723-", "A27724-", "C27725-", "A27726-", "C27727-", "T27728-", "T27729-", "T27730-", "G27731-", "C27732-", "T27733-", "T27734-", "C27735-", "A27736-", "C27737-", "A27738-", "C27739-", "T27740-", "C27741-", "C29857-", "T29858-", "T29859-", "A29860-", "G29861-", "G29862-", "A29863-", "G29864-", "A29865-", "A29866-", "T29867-", "G29868-", "A29869-", "A29885T"]}}}, {"name": "NODE_0001328", "node_attrs": {"div": 9, "num_date": {"value": 2020.4115006444329, "confidence": [2020.248217226753, 2020.5860120809116]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C54966/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6844262295083, "confidence": [2020.6844262295083, 2020.6844262295083]}, "tsne_x": {"value": -12.581783020250386}, "umap_x": {"value": -0.31439856}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.8281903}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.80045221710683}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.926880979052058}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.083566018051697}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kenya"}, "mds2": {"value": 8.944698308810331}, "mds3": {"value": -9.26638415587264}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.464851976253173}}, "branch_attrs": {"mutations": {"nuc": ["G6320T", "G6981A", "C10078T", "C13368T", "G16917T", "C18568T", "T21992-", "A21993-", "T21994-", "A27269-", "A27270-", "G27271-", "T27272-", "T27273-", "T27274-", "C27275-", "C27276-", "A27277-", "T27278-", "T27279-", "T27280-", "G27281-", "G27282-", "A27283-", "A27284-", "T27285-", "C27286-", "T27287-", "T27288-", "G27289-", "C27920T"], "S": ["Y144-"]}, "labels": {"aa": "S: Y144-"}}}, {"name": "NODE_0001329", "node_attrs": {"div": 9, "num_date": {"value": 2020.4224579759482, "confidence": [2020.257273129131, 2020.5968033938718]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001330", "node_attrs": {"div": 9, "num_date": {"value": 2020.4913067855318, "confidence": [2020.2507504403052, 2020.644827714344]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001281", "node_attrs": {"div": 18, "num_date": {"value": 2020.840126124144, "confidence": [2020.727044038258, 2020.8789440046403]}}, "branch_attrs": {"mutations": {"nuc": ["G1264T", "G2879A", "C7600T", "C7851T", "T11078C", "C19602T", "G23012A", "A27853C", "C29722T"], "S": ["E484K"]}, "labels": {"aa": "S: E484K"}}, "children": [{"name": "Brazil/UW20112041379/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.886612021858, "confidence": [2020.886612021858, 2020.886612021858]}, "tsne_x": {"value": -12.74097663926126}, "umap_x": {"value": 0.54911846}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.1491494}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.079821168345545}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "N.9"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -17.999214848577743}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.828917997421046}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.5994787839841585}, "mds3": {"value": -12.662658952541864}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.091363855086183}}, "branch_attrs": {"mutations": {"nuc": ["C6573T", "G19656T"]}}}, {"name": "Brazil/UW20121311835/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.9494535519125, "confidence": [2020.9494535519125, 2020.9494535519125]}, "tsne_x": {"value": -12.743460783950429}, "umap_x": {"value": 0.33523986}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.348882}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.075901107921068}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "N.9"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -17.99839634333574}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.942203255402818}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": 13.333788475874616}, "mds3": {"value": -7.866124729207257}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.111933476060702}}, "branch_attrs": {"mutations": {"nuc": ["G20626T", "G28086T"]}}}]}, {"name": "NODE_0001332", "node_attrs": {"div": 9, "num_date": {"value": 2020.5284213923285, "confidence": [2020.251835016372, 2020.6602434402857]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/HUMAP_412/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9357923497269, "confidence": [2020.9357923497269, 2020.9357923497269]}, "tsne_x": {"value": -13.53057291947101}, "umap_x": {"value": 0.034888133}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6833444}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.936713899404623}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.466976577387186}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.486582644970285}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": -3.10869991334212}, "mds3": {"value": -13.41820661337808}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.92720742054402}}, "branch_attrs": {"mutations": {"nuc": ["C1454T", "T13804C", "C17750T", "T17873C", "C17874T", "A17880C", "C17977T", "C19263T", "C29666T"]}}}, {"name": "Brazil/UW20112947177/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.9112021857923, "confidence": [2020.9112021857923, 2020.9112021857923]}, "tsne_x": {"value": -13.467400080426971}, "umap_x": {"value": 0.3633923}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.3779407}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.092812642266358}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -16.535469936177122}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.120171646800835}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": -10.719347941006436}, "mds3": {"value": -11.35134211914404}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.11264713846457}}, "branch_attrs": {"mutations": {"nuc": ["C4113T", "C6582T", "C11020T", "C11514T", "C15924T", "C19586T", "G23587C", "T27534C", "A28544T", "C28744T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}]}]}, {"name": "NODE_0001261", "node_attrs": {"div": 20, "num_date": {"value": 2020.7221830258288, "confidence": [2020.6759441134418, 2020.7449060744837]}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "C1077T", "C1190A", "A4241G", "C6633T", "A14774G", "C15654T", "T20421C", "A21137G", "G23383A", "A27379-", "T27380-", "T27381-", "G27382-", "C27999T"]}}, "children": [{"name": "URY/1087_del4/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_x": {"value": -13.370431890459969}, "umap_x": {"value": 0.655921}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.058506}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.018141843084187}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -19.51094425264754}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.5214082129645945}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -6.714163757408173}, "mds3": {"value": -16.55923068160388}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.708270242016097}}, "branch_attrs": {"mutations": {}}}, {"name": "URY/1045_del4/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.76912568306, "confidence": [2020.76912568306, 2020.76912568306]}, "tsne_x": {"value": -13.372474956408045}, "umap_x": {"value": 1.2669508}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.3565395}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.613504094285849}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -19.520767097109925}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.886818007667824}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -9.254892460893617}, "mds3": {"value": -20.00810567909621}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -8.303284858131953}}, "branch_attrs": {"mutations": {"nuc": ["C3777T", "A10248G", "G29715T"]}}}, {"name": "NODE_0001336", "node_attrs": {"div": 20, "num_date": {"value": 2020.7472677595629, "confidence": [2020.7149516294876, 2020.7472677595629]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/969_del4/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.75, "confidence": [2020.75, 2020.75]}, "tsne_x": {"value": -13.370535912820309}, "umap_x": {"value": 0.67332214}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.0329723}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.832361529305964}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -19.513119066294827}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.155451042023006}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": -6.573218837635004}, "mds3": {"value": -16.407627229405872}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.065592978266803}}, "branch_attrs": {"mutations": {}}}, {"name": "URY/931_del4/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.7472677595629, "confidence": [2020.7472677595629, 2020.7472677595629]}, "tsne_x": {"value": -13.37010940243174}, "umap_x": {"value": 0.65478975}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.052683}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.354216723622506}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "tsne_y": {"value": -19.5110950256774}, "country": {"value": "Uruguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.276127127582145}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Uruguay"}, "mds2": {"value": 15.952175032537554}, "mds3": {"value": -8.137588842783169}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -4.0760106460273295}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001176", "node_attrs": {"div": 7, "num_date": {"value": 2020.1334526511607, "confidence": [2020.1197259337343, 2020.1757847913582]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001337", "node_attrs": {"div": 7, "num_date": {"value": 2020.1595261766636, "confidence": [2020.1235946376873, 2020.1841129485963]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001339", "node_attrs": {"div": 7, "num_date": {"value": 2020.1688858457228, "confidence": [2020.129907123177, 2020.1869590837844]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001345", "node_attrs": {"div": 7, "num_date": {"value": 2020.1811414248623, "confidence": [2020.1314585970292, 2020.1945170552883]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001068", "node_attrs": {"div": 8, "num_date": {"value": 2020.240652027046, "confidence": [2020.1835760927786, 2020.3186187256508]}}, "branch_attrs": {"mutations": {"nuc": ["A27997G"]}}, "children": [{"name": "GAB/3841-NNO1_Gabon/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_x": {"value": -13.44646002576396}, "umap_x": {"value": -1.7746046}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3878284}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.5475912743329525}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.676172670659437}, "country": {"value": "Gabon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.27540722324734}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gabon"}, "mds2": {"value": 2.0299754145324327}, "mds3": {"value": -7.98521493439325}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.676654389116502}}, "branch_attrs": {"mutations": {"nuc": ["C6027T", "A19153G", "A20142G", "G25337T", "C29625T"], "S": ["D1259Y"]}, "labels": {"aa": "S: D1259Y"}}}, {"name": "GAB/1307-6A_Gabon/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_x": {"value": -12.407916209097651}, "umap_x": {"value": -3.4251704}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.218928}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.948713030428939}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.799012467097766}, "country": {"value": "Gabon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.6997286837179684}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gabon"}, "mds2": {"value": 0.8456738704930883}, "mds3": {"value": -4.528292821731446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.42964844377384}}, "branch_attrs": {"mutations": {"nuc": ["C11941T"]}}}]}, {"name": "NODE_0001217", "node_attrs": {"div": 8, "num_date": {"value": 2020.1963999596119, "confidence": [2020.178120881327, 2020.1990162289655]}}, "branch_attrs": {"mutations": {"nuc": ["C25528T"]}}, "children": [{"name": "BHR/340798279/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7527322404371, "confidence": [2020.7527322404371, 2020.7527322404371]}, "tsne_x": {"value": -12.221600861850945}, "umap_x": {"value": -0.525858}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.0057764}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.294663325438492}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.742613419780172}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.539415398332349}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bahrain"}, "mds2": {"value": 3.902980851354085}, "mds3": {"value": -10.98193685335858}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.35295861174632}}, "branch_attrs": {"mutations": {"nuc": ["T451G", "T3466C", "C19718T", "C22916A", "C23260T", "C24370T", "C25714T", "C28905T"], "S": ["L452M"]}, "labels": {"aa": "S: L452M"}}}, {"name": "NODE_0001218", "node_attrs": {"div": 9, "num_date": {"value": 2020.2090163934427, "confidence": [2020.1961412287271, 2020.2090163934427]}}, "branch_attrs": {"mutations": {"nuc": ["C6573T"]}}, "children": [{"name": "GMB/GC19-015/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2090163934427, "confidence": [2020.2090163934427, 2020.2090163934427]}, "tsne_x": {"value": -12.057151077916174}, "umap_x": {"value": -3.385773}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -5.241108}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0357327830872975}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.326"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.73943342602183}, "country": {"value": "Gambia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.486434106695316}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gambia"}, "mds2": {"value": 0.9559412732429572}, "mds3": {"value": -4.5606654258723465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1414518769246257}}, "branch_attrs": {"mutations": {}}}, {"name": "FR994454", "node_attrs": {"div": 11, "num_date": {"value": 2020.266393442623, "confidence": [2020.266393442623, 2020.266393442623]}, "tsne_x": {"value": -11.452317951992327}, "umap_x": {"value": -2.9422402}, "Nextstrain_clade": {"value": "20A"}, "umap_y": {"value": -5.4345675}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.22040037927147}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.326"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.56378888316583}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 0.5815074644874672}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.7977686406744056}, "mds3": {"value": -5.486042025361984}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8798577602483557}}, "branch_attrs": {"mutations": {"nuc": ["C2395T", "C8481A"]}}}]}]}]}, {"name": "NODE_0001352", "node_attrs": {"div": 7, "num_date": {"value": 2020.1844499614815, "confidence": [2020.1567974067655, 2020.2068616487518]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001353", "node_attrs": {"div": 7, "num_date": {"value": 2020.2019250915628, "confidence": [2020.1808459602814, 2020.2365479043658]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR3031/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_x": {"value": -12.264778843395876}, "umap_x": {"value": -2.8782012}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.383815}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.583943383781404}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.787911335563424}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.056425655699094}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.8837142463786714}, "mds3": {"value": -4.834129243388509}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.413352257491246}}, "branch_attrs": {"mutations": {"nuc": ["G11743T", "C14786T"]}}}, {"name": "NODE_0001354", "node_attrs": {"div": 7, "num_date": {"value": 2020.2407138683075, "confidence": [2020.209341207943, 2020.3053592754695]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001010", "node_attrs": {"div": 8, "num_date": {"value": 2020.419355101633, "confidence": [2020.2837515061049, 2020.5044107313945]}}, "branch_attrs": {"mutations": {"nuc": ["G25617T"]}}, "children": [{"name": "BGD/DNAS_DRICM_isl_MLS-5/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_x": {"value": -13.162427447690895}, "umap_x": {"value": -2.2036428}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5534086}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.263785610813451}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.012219251938731}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.0812214886426}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangladesh"}, "mds2": {"value": -0.5678624348369598}, "mds3": {"value": -6.049693331302136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.683838381660161}}, "branch_attrs": {"mutations": {"nuc": ["A1163T", "C1909T", "T14408C"]}}}, {"name": "OA992173", "node_attrs": {"div": 11, "num_date": {"value": 2020.7527322404371, "confidence": [2020.7527322404371, 2020.7527322404371]}, "tsne_x": {"value": -13.022879328262398}, "umap_x": {"value": -2.9385064}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.474853}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.035101283147579}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.739510990604504}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.6143623980241125}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.8164424950653247}, "mds3": {"value": -5.711495554145093}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1414697253903937}}, "branch_attrs": {"mutations": {"nuc": ["G1590T", "G6421T", "A11120G"]}}}]}, {"name": "NODE_0001357", "node_attrs": {"div": 7, "num_date": {"value": 2020.2882472559268, "confidence": [2020.2119578540864, 2020.3101092896175]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PAK/Sialkot/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3592896174864, "confidence": [2020.3592896174864, 2020.3592896174864]}, "tsne_x": {"value": -11.803449425235431}, "umap_x": {"value": -2.6848428}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.519943}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.944975471853311}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.379437944004508}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.58111217393522}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Pakistan"}, "mds2": {"value": 1.7246541994969684}, "mds3": {"value": -5.228290376094935}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.8810987539933}}, "branch_attrs": {"mutations": {"nuc": ["C20031T", "C24370T", "C28810T", "A29865G"]}}}, {"name": "OU994004", "node_attrs": {"div": 7, "num_date": {"value": 2020.3101092896175, "confidence": [2020.3101092896175, 2020.3101092896175]}, "tsne_x": {"value": -12.160704741003176}, "umap_x": {"value": -3.5216637}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2065024}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.961731601335619}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.828296404453017}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.150851495164019}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mecca"}, "mds2": {"value": 0.9294390072899292}, "mds3": {"value": -3.8968743614360895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.94365450723644}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001360", "node_attrs": {"div": 7, "num_date": {"value": 2020.1944817993067, "confidence": [2020.1749723477437, 2020.2096532128212]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001362", "node_attrs": {"div": 7, "num_date": {"value": 2020.2159948753072, "confidence": [2020.1978969505083, 2020.26912568306]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX580928", "node_attrs": {"div": 8, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_x": {"value": -12.095850280279947}, "umap_x": {"value": -3.344736}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2971683}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 28.43463482442716}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.82050967833124}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 3.455129251405732}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Wales"}, "mds2": {"value": 1.0293415689260978}, "mds3": {"value": -3.946692559629217}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 9.438739133014538}}, "branch_attrs": {"mutations": {"nuc": ["G680T"]}}}, {"name": "NODE_0001099", "node_attrs": {"div": 8, "num_date": {"value": 2020.359380016623, "confidence": [2020.2683730228528, 2020.4262659012702]}}, "branch_attrs": {"mutations": {"nuc": ["T19893C"]}}, "children": [{"name": "OA974883", "node_attrs": {"div": 16, "num_date": {"value": 2020.6079234972678, "confidence": [2020.6079234972678, 2020.6079234972678]}, "tsne_x": {"value": -11.699857406646132}, "umap_x": {"value": -0.7241762}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.039476}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.028438271411526}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.253"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.32614422510732}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.832169355346687}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.2974663628762788}, "mds3": {"value": -10.443670495691045}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.141105791853761}}, "branch_attrs": {"mutations": {"nuc": ["G4105T", "C4391A", "C11124T", "G14792T", "C15848T", "G19254T", "C21254T", "C25889T"]}}}, {"name": "OA980838", "node_attrs": {"div": 9, "num_date": {"value": 2020.4521857923498, "confidence": [2020.4521857923498, 2020.4521857923498]}, "tsne_x": {"value": -12.252868540066403}, "umap_x": {"value": -3.4983666}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.179529}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0362746392956055}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.253"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.84096441568078}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.7077549444093318}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.9381034441427548}, "mds3": {"value": -4.577307222248653}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1421318837135328}}, "branch_attrs": {"mutations": {"nuc": ["T23965C"]}}}]}]}, {"name": "NODE_0001366", "node_attrs": {"div": 7, "num_date": {"value": 2020.2026792944057, "confidence": [2020.185268200228, 2020.2125380920345]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR3139/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_x": {"value": -12.30894937002344}, "umap_x": {"value": -3.4615571}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1955767}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.586081480687612}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.75938484282432}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.137670831162908}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "New Zealand"}, "mds2": {"value": 1.0259666601832154}, "mds3": {"value": -4.500196242543446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.410128229605435}}, "branch_attrs": {"mutations": {"nuc": ["G25644T", "C26942T"]}}}, {"name": "NODE_0001283", "node_attrs": {"div": 8, "num_date": {"value": 2020.2450640046782, "confidence": [2020.1460645440557, 2020.3533847188357]}}, "branch_attrs": {"mutations": {"nuc": ["G25088T"], "S": ["V1176F"]}, "labels": {"aa": "S: V1176F"}}, "children": [{"name": "NODE_0001370", "node_attrs": {"div": 8, "num_date": {"value": 2020.3205886989238, "confidence": [2020.1301805883836, 2020.3700819441094]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001288", "node_attrs": {"div": 17, "num_date": {"value": 2020.5231039133612, "confidence": [2020.481820081843, 2020.536715022324]}}, "branch_attrs": {"mutations": {"nuc": ["C106T", "G4146A", "A6319G", "C9344T", "A11782G", "C19018T", "G19656T", "C20574T", "T26149C"]}}, "children": [{"name": "BRA/HRMS_1251/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_x": {"value": -9.944115825402942}, "umap_x": {"value": 0.21651669}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.430122}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.964625487083498}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -17.950617598625666}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.811629780288593}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": 2.255532927561249}, "mds3": {"value": -11.35207500125822}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.909412706088617}}, "branch_attrs": {"mutations": {"nuc": ["C21707T"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}}, {"name": "NODE_0001372", "node_attrs": {"div": 17, "num_date": {"value": 2020.6044889232971, "confidence": [2020.5299390519058, 2020.6350794464215]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/HRMS_1724/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.886612021858, "confidence": [2020.886612021858, 2020.886612021858]}, "tsne_x": {"value": -9.950454189461052}, "umap_x": {"value": -0.15723118}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.580662}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.9648527412732735}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -17.943733645255378}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.463879933983264}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": 2.0465464390396}, "mds3": {"value": -10.723108975508255}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.90973394808356}}, "branch_attrs": {"mutations": {}}}, {"name": "BRA/HRMS_1720/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6379781420765, "confidence": [2020.6379781420765, 2020.6379781420765]}, "tsne_x": {"value": -9.944875087495124}, "umap_x": {"value": 0.12659016}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.46537}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.964898917986874}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -17.94967085427618}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.910923496388753}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": 2.386909564631788}, "mds3": {"value": -11.301723034519094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.909780556818447}}, "branch_attrs": {"mutations": {"nuc": ["T7645C"]}}}]}]}, {"name": "NODE_0001373", "node_attrs": {"div": 8, "num_date": {"value": 2020.4102813019692, "confidence": [2020.205717579512, 2020.604117000528]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/HRMS_1587/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.6489071038252, "confidence": [2020.6489071038252, 2020.6489071038252]}, "tsne_x": {"value": -12.523184700748208}, "umap_x": {"value": -1.6643778}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.497769}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.96446836138084}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -13.515425357015376}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.353003907787329}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": 1.327877143194811}, "mds3": {"value": -7.946615939736205}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.93501967564675}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "A3021G", "G6694A", "T15039C", "G18985T"]}}}, {"name": "NODE_0001374", "node_attrs": {"div": 8, "num_date": {"value": 2020.485187395981, "confidence": [2020.204255113471, 2020.6739417593762]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001377", "node_attrs": {"div": 8, "num_date": {"value": 2020.5338280122953, "confidence": [2020.205329782433, 2020.676480483439]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/HUMAP_523/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.782786885246, "confidence": [2020.782786885246, 2020.782786885246]}, "tsne_x": {"value": -10.848465445600638}, "umap_x": {"value": -0.6631266}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.0526156}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.9543130037296335}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.613643653930003}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.414229775516246}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": 2.457471688765572}, "mds3": {"value": -9.743576115309247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.93218274188926}}, "branch_attrs": {"mutations": {"nuc": ["C313T", "C774A", "C11005T", "C17734T", "G24815A", "G25266T", "C27610T"], "S": ["G1085R", "C1235F"]}, "labels": {"aa": "S: G1085R, C1235F"}}}, {"name": "Brazil/UW20112254126/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8920765027322, "confidence": [2020.8920765027322, 2020.8920765027322]}, "tsne_x": {"value": -12.786604743898671}, "umap_x": {"value": -0.49315146}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.9545827}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.08688003550367}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -13.066344321678905}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.9096827677378216}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": 8.225130400547155}, "mds3": {"value": -8.47542848529201}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.121294768806923}}, "branch_attrs": {"mutations": {"nuc": ["T1750C", "C1912T", "C3261T", "G11417T", "G21423A", "C22858T", "C24138T", "C28093T", "T29728-", "T29729-", "C29730-"], "S": ["T859I"]}, "labels": {"aa": "S: T859I"}}}]}, {"name": "NODE_0001286", "node_attrs": {"div": 15, "num_date": {"value": 2020.8093177909586, "confidence": [2020.5691391501791, 2020.9424448584812]}}, "branch_attrs": {"mutations": {"nuc": ["T11212C", "A11595G", "G23285T", "C25463T", "G25526T", "G25906T", "C27923T"], "S": ["A575S"]}, "labels": {"aa": "S: A575S"}}, "children": [{"name": "PRY/202102793_631550/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_x": {"value": -11.71814872771298}, "umap_x": {"value": 1.547903}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.021904}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.951667329250831}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -17.704071000779614}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.33574125696945}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Paraguay"}, "mds2": {"value": -18.227454600649992}, "mds3": {"value": -10.283758055070097}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 15.022673677804455}}, "branch_attrs": {"mutations": {"nuc": ["C4680T", "C5310T", "A8842G", "T13908C", "A14604G", "C14937T", "T17433C", "C18657T", "C20402T", "C24865T", "C28775T"]}}}, {"name": "PRY/202102791_631528/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_x": {"value": -11.750968390671094}, "umap_x": {"value": 0.09540769}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6453867}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.8571060859142765}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -17.537306678508866}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.416431636154778}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Paraguay"}, "mds2": {"value": 10.895196463014027}, "mds3": {"value": -9.118020929952888}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 18.352494107345464}}, "branch_attrs": {"mutations": {"nuc": ["G15544T", "G16852-", "G16853-", "T16854-", "C19572T", "G27777T"]}}}]}]}]}]}, {"name": "NODE_0001291", "node_attrs": {"div": 9, "num_date": {"value": 2020.3199112398697, "confidence": [2020.1744863694068, 2020.381512339841]}}, "branch_attrs": {"mutations": {"nuc": ["C12053T"]}}, "children": [{"name": "NODE_0001380", "node_attrs": {"div": 9, "num_date": {"value": 2020.359867129429, "confidence": [2020.2803203020471, 2020.4858760035713]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001294", "node_attrs": {"div": 15, "num_date": {"value": 2020.5887978142077, "confidence": [2020.541466377341, 2020.5887978142077]}}, "branch_attrs": {"mutations": {"nuc": ["C1392T", "G2441A", "C5974T", "G11083T", "C20132T", "C25701T"]}}, "children": [{"name": "PRY/WOR12903A667_202103294_2-4710628/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5887978142077, 2020.5887978142077]}, "tsne_x": {"value": -9.403253527295194}, "umap_x": {"value": -1.0858138}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1747794}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.101109017653189}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -14.949160984540782}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.870114866995115}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Paraguay"}, "mds2": {"value": 0.659472099533328}, "mds3": {"value": -10.55118802198106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.128244066694236}}, "branch_attrs": {"mutations": {}}}, {"name": "PRY/202102776_631400/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0808219178082, "confidence": [2021.0808219178082, 2021.0808219178082]}, "tsne_x": {"value": -9.222067921400445}, "umap_x": {"value": 1.116082}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.5291245}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.12291536080039}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -14.956155229774229}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.059142318258903}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Paraguay"}, "mds2": {"value": -9.416805854989272}, "mds3": {"value": -17.243992331074832}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 9.635867003540046}}, "branch_attrs": {"mutations": {"nuc": ["C5211T", "A5257G", "C6627T", "T8104C", "C9746T", "C9803T", "C18306T", "C21614T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}]}, {"name": "NODE_0001384", "node_attrs": {"div": 9, "num_date": {"value": 2020.4134710159083, "confidence": [2020.2841128304256, 2020.511050604853]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/WOR12903A625_202103296_2-4710536/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.613387978142, "confidence": [2020.613387978142, 2020.613387978142]}, "tsne_x": {"value": -12.76852118009656}, "umap_x": {"value": -0.31961036}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.8478045}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.070124037960132}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -12.673642052094184}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.757881089608517}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Paraguay"}, "mds2": {"value": 4.306256162516531}, "mds3": {"value": -11.402146713857103}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.96708417350039}}, "branch_attrs": {"mutations": {"nuc": ["C106T", "A3081G", "C13225T", "G19891T", "T21992-", "A21993-", "T21994-", "G22104T", "C26822T", "C28310T"], "S": ["Y144-", "G181V"]}, "labels": {"aa": "S: Y144-, G181V"}}}, {"name": "NODE_0001385", "node_attrs": {"div": 9, "num_date": {"value": 2020.5394837673596, "confidence": [2020.1709939085322, 2020.7721403053897]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PHL/PH-DDOPH-12-6/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.4013698630138, "confidence": [2021.4013698630138, 2021.4013698630138]}, "tsne_x": {"value": -10.479716348698416}, "umap_x": {"value": -0.45624906}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.937062}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.875020949313294}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -14.813987569639156}, "country": {"value": "Philippines"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.3107277657460232}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Davao Region"}, "mds2": {"value": 9.257072189074613}, "mds3": {"value": -6.6932122484369065}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.784706050890524}}, "branch_attrs": {"mutations": {"nuc": ["G487T", "C10755T", "C17850T", "T22917G", "G26842A", "C29367T", "G29701A", "C29739T"], "S": ["L452R"]}, "labels": {"aa": "S: L452R"}}}, {"name": "Brazil/UW20120111936/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.9166666666667, "confidence": [2020.9166666666667, 2020.9166666666667]}, "tsne_x": {"value": -13.06971001122265}, "umap_x": {"value": -0.4194179}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.843789}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.072971359506106}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -12.58298930655939}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.5855646463525006}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.2086175952760394}, "mds3": {"value": -12.704704507325827}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.08777203354314}}, "branch_attrs": {"mutations": {"nuc": ["G4486A", "C9133T", "A15671C", "C18204T", "A18585G", "G22918T", "T25942C", "T26315C"]}}}]}]}]}, {"name": "NODE_0001386", "node_attrs": {"div": 9, "num_date": {"value": 2020.3283859880742, "confidence": [2020.1790054327319, 2020.386164060399]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SPPU-2019/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.422131147541, "confidence": [2020.422131147541, 2020.422131147541]}, "tsne_x": {"value": -13.133850909242426}, "umap_x": {"value": -0.7271686}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.0671268}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.269163811552376}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -12.240777470056528}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.206968056975506}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": 4.007564230493149}, "mds3": {"value": -10.100310182258298}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.968617804374622}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "C119T", "A12416G", "A12417T", "A21137G", "C25710T", "G29755A", "G29862T"]}}}, {"name": "NODE_0001297", "node_attrs": {"div": 10, "num_date": {"value": 2020.380287911892, "confidence": [2020.2449175463223, 2020.5494354926386]}}, "branch_attrs": {"mutations": {"nuc": ["C28253T"]}}, "children": [{"name": "Brazil/UW20122117359/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_x": {"value": -12.681436176283896}, "umap_x": {"value": 1.1811671}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.4733524}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.063311247414262}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -12.09766534168118}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.860103890484645}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": 21.43395719267912}, "mds3": {"value": -4.37832073442831}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.11856137395778}}, "branch_attrs": {"mutations": {"nuc": ["C1403T", "G2123T", "C3253T", "G3955T", "G4300T", "G8017T", "A8425T", "C8818T", "T13890C", "C25413T", "C25553T", "C26060T", "C27741T", "G28079T"]}}}, {"name": "NODE_0001298", "node_attrs": {"div": 17, "num_date": {"value": 2020.6650767755925, "confidence": [2020.5627632307958, 2020.8465528539753]}}, "branch_attrs": {"mutations": {"nuc": ["C100T", "T10667G", "C11824T", "A12964G", "G23012A", "G28628T", "G28975T"], "S": ["E484K"]}, "labels": {"aa": "S: E484K"}}, "children": [{"name": "NODE_0001301", "node_attrs": {"div": 19, "num_date": {"value": 2020.8077406276125, "confidence": [2020.682044795302, 2020.895317869942]}}, "branch_attrs": {"mutations": {"nuc": ["C5239T", "C6781T"]}}, "children": [{"name": "Brazil/UW20112463986/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_x": {"value": -13.95516795372526}, "umap_x": {"value": 0.1942928}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.2701817}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.09264612240333}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.420113271645487}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.640040745581794}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -4.8152475963551575}, "mds3": {"value": -11.649953014334004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.132625265136458}}, "branch_attrs": {"mutations": {"nuc": ["C4901A", "C11518T"]}}}, {"name": "NODE_0001230", "node_attrs": {"div": 19, "num_date": {"value": 2020.8452899552876, "confidence": [2020.687167674537, 2020.901227589097]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/UW21010778719/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.017808219178, "confidence": [2021.017808219178, 2021.017808219178]}, "tsne_x": {"value": -13.947258032233814}, "umap_x": {"value": 1.3792518}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.2434864}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.093078946084718}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.436210717194433}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.16538211479899}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -11.00841034990302}, "mds3": {"value": -11.831681965301744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.14998433616968}}, "branch_attrs": {"mutations": {"nuc": ["C3884T", "A14070G", "C20762T", "C21058T", "C25096T", "G28233T"]}}}, {"name": "Brazil/UW20120137619/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.9166666666667, "confidence": [2020.9166666666667, 2020.9166666666667]}, "tsne_x": {"value": -13.95588569825084}, "umap_x": {"value": 0.12757911}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.268926}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.092702498132462}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.418341804678525}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.7665402111845}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.475607203112199}, "mds3": {"value": -10.425648109993856}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.132783660767124}}, "branch_attrs": {"mutations": {"nuc": ["G17338T"]}}}]}]}, {"name": "NODE_0001392", "node_attrs": {"div": 17, "num_date": {"value": 2020.7042827902828, "confidence": [2020.5639337189325, 2020.8562313998934]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001313", "node_attrs": {"div": 18, "num_date": {"value": 2020.779907161584, "confidence": [2020.6191011869673, 2020.870218579235]}}, "branch_attrs": {"mutations": {"nuc": ["T3766C"]}}, "children": [{"name": "Brazil/UW20111496493/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.870218579235, "confidence": [2020.870218579235, 2020.870218579235]}, "tsne_x": {"value": -13.959094278626544}, "umap_x": {"value": 0.06927437}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.3448067}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.084255379881208}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.41101647994969}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.128768121765589}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -4.5902300201014015}, "mds3": {"value": -10.957405475693438}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.13628271862329}}, "branch_attrs": {"mutations": {"nuc": ["C21789T", "C26042T"], "S": ["T76I"]}, "labels": {"aa": "S: T76I"}}}, {"name": "NODE_0001315", "node_attrs": {"div": 20, "num_date": {"value": 2020.8632100328077, "confidence": [2020.705531416571, 2020.9565106393623]}}, "branch_attrs": {"mutations": {"nuc": ["G8408A", "C22747A"]}}, "children": [{"name": "PRY/202102872_30648/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_x": {"value": -13.961091539103272}, "umap_x": {"value": 1.4820334}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.1173134}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.6590053169916406}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.39309160235523}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.126998506226503}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -12.09001186668951}, "mds3": {"value": -13.013963573148612}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.522661606698032}}, "branch_attrs": {"mutations": {"nuc": ["G2659T", "C7834T", "T11573C", "C12741T", "G25290T"], "S": ["C1243F"]}, "labels": {"aa": "S: C1243F"}}}, {"name": "Brazil/BR-PR-UW21011947314/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.0506849315068, "confidence": [2021.0506849315068, 2021.0506849315068]}, "tsne_x": {"value": -13.959297340553064}, "umap_x": {"value": 1.4419124}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.1456783}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.099629099521222}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.380973037966989}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.38568994697976}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": 17.924228491434466}, "mds3": {"value": -7.016995585945939}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 28.15551862951262}}, "branch_attrs": {"mutations": {"nuc": ["G2167T", "C2455T", "G2944A", "C14724T", "T20401C", "C25207T", "A28254C"]}}}]}, {"name": "NODE_0001395", "node_attrs": {"div": 18, "num_date": {"value": 2020.8086710820003, "confidence": [2020.621482586226, 2020.9269853808871]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102881_36160/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.154794520548, "confidence": [2021.154794520548, 2021.154794520548]}, "tsne_x": {"value": -13.970234305490688}, "umap_x": {"value": 1.4796001}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.0969012}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.856266549232078}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.375213922338574}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 19.50729903535271}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -16.550279536006148}, "mds3": {"value": -12.46693976293052}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 17.92956032141357}}, "branch_attrs": {"mutations": {"nuc": ["A3255C", "G4720T", "C6347T", "C13647T", "C17002T", "C20762T", "C22916A", "G24390T", "A27606C"], "S": ["L452M", "S943I"]}, "labels": {"aa": "S: L452M, S943I"}}}, {"name": "NODE_0001396", "node_attrs": {"div": 18, "num_date": {"value": 2020.8560952488508, "confidence": [2020.6203162520942, 2020.9543605661484]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102866_29987/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_x": {"value": -13.958647475043271}, "umap_x": {"value": 1.4626024}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.1421957}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.458537659009894}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.404616983058071}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 21.60196858668136}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -11.303988097027624}, "mds3": {"value": -12.960299133574445}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 8.899533666591353}}, "branch_attrs": {"mutations": {"nuc": ["C4784T", "C13274T", "C13605T", "C18744T", "G24199T", "C29095T", "C29272T"]}}}, {"name": "PRY/202102919_60181/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.2123287671234, "confidence": [2021.2123287671234, 2021.2123287671234]}, "tsne_x": {"value": -13.959796266615127}, "umap_x": {"value": 1.4452385}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.1932447}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.50648816960613}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.40609402894568}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.956542712852126}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -12.433750292604548}, "mds3": {"value": -14.712553537989768}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.747424065638619}}, "branch_attrs": {"mutations": {"nuc": ["T9702G", "C9711T", "C17010T", "G17721T", "G20029A", "A25003T", "G28655T"]}}}]}]}]}, {"name": "NODE_0001398", "node_attrs": {"div": 17, "num_date": {"value": 2020.7085324473524, "confidence": [2020.5719614591187, 2020.8632675510073]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001305", "node_attrs": {"div": 18, "num_date": {"value": 2020.818243250199, "confidence": [2020.6872945508678, 2020.8811475409836]}}, "branch_attrs": {"mutations": {"nuc": ["A28254C"]}}, "children": [{"name": "Brazil/UW20111828609/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8811475409836, "confidence": [2020.8811475409836, 2020.8811475409836]}, "tsne_x": {"value": -13.958721054174235}, "umap_x": {"value": -0.108390935}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.571969}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.096231871786276}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.413256119619373}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.94881459153519}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.0407975236270475}, "mds3": {"value": -10.246359853088563}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.152618000071737}}, "branch_attrs": {"mutations": {"nuc": ["C4679T"]}}}, {"name": "Brazil/UW20122234096/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.974043715847, "confidence": [2020.974043715847, 2020.974043715847]}, "tsne_x": {"value": -13.958200475831983}, "umap_x": {"value": 0.15700492}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.290879}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.094901041038767}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.41351952619797}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.848811024430525}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -4.003001762794011}, "mds3": {"value": -12.112701755997405}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.17223698327712}}, "branch_attrs": {"mutations": {"nuc": ["G21641T", "C29077T", "C29741T"], "S": ["A27S"]}, "labels": {"aa": "S: A27S"}}}]}, {"name": "NODE_0001400", "node_attrs": {"div": 17, "num_date": {"value": 2020.7328025717286, "confidence": [2020.5711616321225, 2020.8613504359905]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/UW20112539119/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.9002732240438, "confidence": [2020.9002732240438, 2020.9002732240438]}, "tsne_x": {"value": -13.948666185171543}, "umap_x": {"value": 1.1657482}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.4799693}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.085127965167622}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.434549896822292}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 16.22249768789481}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -9.920891860172729}, "mds3": {"value": -13.126215892761984}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.13871126449466}}, "branch_attrs": {"mutations": {"nuc": ["G5206T", "C12073T", "C18032T", "A20805G", "C21575T", "C21597T", "C27847T"], "S": ["L5F", "S12F"]}, "labels": {"aa": "S: L5F, S12F"}}}, {"name": "NODE_0001401", "node_attrs": {"div": 17, "num_date": {"value": 2020.7566797368402, "confidence": [2020.570820857924, 2020.860832454278]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001307", "node_attrs": {"div": 18, "num_date": {"value": 2020.8403989642204, "confidence": [2020.6972159010813, 2020.885811836009]}}, "branch_attrs": {"mutations": {"nuc": ["G12769T"]}}, "children": [{"name": "Brazil/UW20121259527/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.9467213114754, "confidence": [2020.9467213114754, 2020.9467213114754]}, "tsne_x": {"value": -13.957156835562712}, "umap_x": {"value": 0.11492908}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.352567}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.094050041771958}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.416824354783085}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.45284607699122}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.226643085438142}, "mds3": {"value": -9.890411543046264}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.132979096780414}}, "branch_attrs": {"mutations": {"nuc": ["G25677T"]}}}, {"name": "Brazil/UW20112345293/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8948087431695, "confidence": [2020.8948087431695, 2020.8948087431695]}, "tsne_x": {"value": -13.956503469371643}, "umap_x": {"value": 0.09433498}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.341645}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.093370174163596}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.418075451251635}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.1811540325661}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.582892651216411}, "mds3": {"value": -10.636787464711698}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.13210935160877}}, "branch_attrs": {"mutations": {"nuc": ["A8436G", "C10335T"]}}}]}, {"name": "NODE_0001403", "node_attrs": {"div": 17, "num_date": {"value": 2020.7692375423408, "confidence": [2020.5727191335397, 2020.8647885290736]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001404", "node_attrs": {"div": 17, "num_date": {"value": 2020.7820553081647, "confidence": [2020.574605815161, 2020.8768552709955]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/BR-MT-UW21020205724/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0890410958905, "confidence": [2021.0890410958905, 2021.0890410958905]}, "tsne_x": {"value": -13.954112077673129}, "umap_x": {"value": 0.7759154}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.8439426}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.090494126180475}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.426665210604106}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.977544145438566}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -6.445342161901492}, "mds3": {"value": -13.409425501332803}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.136384748470142}}, "branch_attrs": {"mutations": {"nuc": ["G3340T", "C5979T", "G6421T", "C13860T", "A14604G", "G21604T"], "S": ["Q14H"]}, "labels": {"aa": "S: Q14H"}}}, {"name": "Brazil/UW20121059763/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_x": {"value": -13.955992824100193}, "umap_x": {"value": 0.7091137}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.8685982}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.092117692651188}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.425868775932427}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.640257924964413}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Brazil"}, "mds2": {"value": -8.800250095354253}, "mds3": {"value": -12.984226917638722}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.154806662034524}}, "branch_attrs": {"mutations": {"nuc": ["C13019T", "C21530G", "T21534A", "G21535T", "A21536C", "A25946G"]}}}]}, {"name": "NODE_0001309", "node_attrs": {"div": 20, "num_date": {"value": 2020.858027152334, "confidence": [2020.7654876384515, 2020.9144793516034]}}, "branch_attrs": {"mutations": {"nuc": ["G21123T", "C27684T", "T27901C"]}}, "children": [{"name": "PRY/202102896_57351/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.2013698630137, "confidence": [2021.2013698630137, 2021.2013698630137]}, "tsne_x": {"value": -13.968586259723686}, "umap_x": {"value": 1.2391665}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.4028978}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.447010681564608}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.390208224333506}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.216336846704205}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -8.054841303999174}, "mds3": {"value": -14.007289241038972}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 8.901243741144228}}, "branch_attrs": {"mutations": {"nuc": ["C6336T", "G16917T", "G25996T"]}}}, {"name": "NODE_0001310", "node_attrs": {"div": 20, "num_date": {"value": 2020.8793590168184, "confidence": [2020.7678021384604, 2020.9245181787126]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001407", "node_attrs": {"div": 21, "num_date": {"value": 2020.9384044448807, "confidence": [2020.8034277393294, 2021.0122750851865]}}, "branch_attrs": {"mutations": {"nuc": ["C29754T"]}}, "children": [{"name": "PRY/202102856_29947/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_x": {"value": -13.969358572763849}, "umap_x": {"value": 1.3788053}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.246819}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.602983895553057}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.390328605812469}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.304890364137872}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -9.80578517333472}, "mds3": {"value": -14.546242583990592}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.728386741234745}}, "branch_attrs": {"mutations": {"nuc": ["G9130T", "C29409T", "C29614T"]}}}, {"name": "PRY/202102858_29957/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_x": {"value": -13.992593990387174}, "umap_x": {"value": 1.5134712}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.0579104}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.433398256186408}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.349989373884188}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 20.41573009245681}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -16.23339191003083}, "mds3": {"value": -14.497312370943192}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.98173838110684}}, "branch_attrs": {"mutations": {"nuc": ["C11152T", "G15327T", "G16917T", "C17373T", "C29304T", "C29421T", "C29625T"]}}}]}, {"name": "NODE_0001311", "node_attrs": {"div": 21, "num_date": {"value": 2020.9049419553187, "confidence": [2020.8334715696328, 2020.938524590164]}}, "branch_attrs": {"mutations": {"nuc": ["A28254C"]}}, "children": [{"name": "BRA/HUMAP_1277/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.938524590164, "confidence": [2020.938524590164, 2020.938524590164]}, "tsne_x": {"value": -13.967787055520414}, "umap_x": {"value": 1.338141}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.2896411}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.974863995586055}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.39284404193646}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.8957695523617}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": -8.31604154310945}, "mds3": {"value": -13.54742406760036}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.80862893142901}}, "branch_attrs": {"mutations": {"nuc": ["C8772T", "C29754T"]}}}, {"name": "PRY/202102808_631690/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_x": {"value": -13.967254891804007}, "umap_x": {"value": 1.2477523}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.3959558}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.295792048056227}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "tsne_y": {"value": -9.392973349424272}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.676402479892616}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "division": {"value": "Paraguay"}, "mds2": {"value": -8.006576727138466}, "mds3": {"value": -14.172531053202336}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 9.56194983536798}}, "branch_attrs": {"mutations": {"nuc": ["C10993T", "G29392T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001409", "node_attrs": {"div": 7, "num_date": {"value": 2020.1688170394418, "confidence": [2020.1365013906068, 2020.1945411882914]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001092", "node_attrs": {"div": 8, "num_date": {"value": 2020.2164695081074, "confidence": [2020.1824787831, 2020.3011695866455]}}, "branch_attrs": {"mutations": {"nuc": ["C21622T"]}}, "children": [{"name": "USA/AK-PHL477/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4467213114754, "confidence": [2020.4467213114754, 2020.4467213114754]}, "tsne_x": {"value": -13.44881585188528}, "umap_x": {"value": -1.3207326}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2865562}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.454150332566318}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.228"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.576066499377031}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.021986705147876}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Alaska"}, "mds2": {"value": 5.057488851899289}, "mds3": {"value": -7.904763746688813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.07110399950745}}, "branch_attrs": {"mutations": {"nuc": ["T409C", "G14500T", "A20288G", "C21721T", "C26894T", "C28638A"]}}}, {"name": "OA984547", "node_attrs": {"div": 19, "num_date": {"value": 2020.6352459016393, "confidence": [2020.6352459016393, 2020.6352459016393]}, "tsne_x": {"value": -10.33692901308922}, "umap_x": {"value": 0.19375487}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.556368}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.004752830266957}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.119857501556886}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.750462367391432}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": -3.846665463145094}, "mds3": {"value": -13.455993033716966}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0914933317655803}}, "branch_attrs": {"mutations": {"nuc": ["T595C", "A8244G", "G8408A", "G12191T", "C19488T", "T26171A", "C28500T", "G29254A", "C29409T", "G29474T", "G29751C"]}}}]}, {"name": "NODE_0001411", "node_attrs": {"div": 7, "num_date": {"value": 2020.185636077319, "confidence": [2020.1642867784944, 2020.2017484693927]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001026", "node_attrs": {"div": 8, "num_date": {"value": 2020.2117486338798, "confidence": [2020.194036683769, 2020.2117486338798]}}, "branch_attrs": {"mutations": {"nuc": ["G25785T"]}}, "children": [{"name": "TWN/CGMH-CGU-18/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_x": {"value": -12.1895262667064}, "umap_x": {"value": -3.5115814}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1694527}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.924276928699502}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.799704268768696}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.099945334369168}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Taiwan"}, "mds2": {"value": 1.088238820657737}, "mds3": {"value": -4.233520833006141}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.804170056558164}}, "branch_attrs": {"mutations": {}}}, {"name": "GMB/14747/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_x": {"value": -12.41637070237257}, "umap_x": {"value": 1.5786359}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -2.8394387}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.019944082940976}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.420"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.07898148145286}, "country": {"value": "Gambia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.949056996755825}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gambia"}, "mds2": {"value": -19.635401062392507}, "mds3": {"value": -15.095105236742702}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.111066355562112}}, "branch_attrs": {"mutations": {"nuc": ["T847C", "G3994T", "C5178T", "A5353G", "C5548T", "A11451G", "C11758T", "A12533G", "C13694T", "T18132C", "G19962T", "C20148T", "C21614T", "C22450T", "T22882G", "A24373G", "G25839T", "C28310T", "G28539T", "T28862A"], "S": ["L18F", "N440K"]}, "labels": {"aa": "S: L18F, N440K"}}}]}, {"name": "NODE_0001414", "node_attrs": {"div": 7, "num_date": {"value": 2020.2007759054334, "confidence": [2020.1801582854553, 2020.231859679163]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001082", "node_attrs": {"div": 9, "num_date": {"value": 2020.3242580429696, "confidence": [2020.2372012485393, 2020.3966410352482]}}, "branch_attrs": {"mutations": {"nuc": ["C21597T", "C29144T"], "S": ["S12F"]}, "labels": {"aa": "S: S12F"}}, "children": [{"name": "PHL/COVID-3477/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4931693989072, "confidence": [2020.4931693989072, 2020.4931693989072]}, "tsne_x": {"value": -10.12945284038206}, "umap_x": {"value": -0.711213}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.066597}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.645874136843391}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.63"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.423220307922376}, "country": {"value": "Philippines"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.916719439010774}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Manila"}, "mds2": {"value": 4.399262355222817}, "mds3": {"value": -9.551231476319051}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.7781416310493565}}, "branch_attrs": {"mutations": {"nuc": ["G61T", "C6726T", "G14414T", "C26607T", "G29543T", "G29654A"]}}}, {"name": "NODE_0001083", "node_attrs": {"div": 12, "num_date": {"value": 2020.4793377308013, "confidence": [2020.4088694749432, 2020.5127718453373]}}, "branch_attrs": {"mutations": {"nuc": ["C2973T", "C20312T", "C28308G"]}}, "children": [{"name": "HongKong/Case1433/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.52868852459, "confidence": [2020.52868852459, 2020.52868852459]}, "tsne_x": {"value": -9.697130066461233}, "umap_x": {"value": -1.3824011}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.274239}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.029245448914801}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.63"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.144676716939308}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.8904721050053904}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Hong Kong"}, "mds2": {"value": 3.618887895226911}, "mds3": {"value": -8.28666666992143}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1453394711918789}}, "branch_attrs": {"mutations": {"nuc": ["C3656T", "C4071A"]}}}, {"name": "NODE_0001420", "node_attrs": {"div": 12, "num_date": {"value": 2020.4967308172618, "confidence": [2020.4557582767548, 2020.5182564308316]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKPU-00002/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5833333333333, "confidence": [2020.5833333333333, 2020.5833333333333]}, "tsne_x": {"value": -9.761779666974622}, "umap_x": {"value": -1.7646303}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4519997}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 46.438089369778005}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.63"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.159614085312274}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 0.7133578926419121}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Hong Kong"}, "mds2": {"value": 4.225659002594571}, "mds3": {"value": -5.318157404592843}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.4302174033366626}}, "branch_attrs": {"mutations": {"nuc": ["C16985T"]}}}, {"name": "NODE_0001421", "node_attrs": {"div": 12, "num_date": {"value": 2020.5204918032787, "confidence": [2020.491366481048, 2020.5204918032787]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/Case1366/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5204918032787, "confidence": [2020.5204918032787, 2020.5204918032787]}, "tsne_x": {"value": -9.853428726332028}, "umap_x": {"value": -2.0857615}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5368247}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0310084313121015}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.63"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.183701682298311}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.699505378980749}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Hong Kong"}, "mds2": {"value": 2.9103532402138668}, "mds3": {"value": -6.688043117283903}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1459129852908008}}, "branch_attrs": {"mutations": {}}}, {"name": "HongKong/HKPU-00057/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5314207650274, "confidence": [2020.5314207650274, 2020.5314207650274]}, "tsne_x": {"value": -9.850734831045044}, "umap_x": {"value": -1.8578863}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.517003}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.029885041138277}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.63"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.181423935992376}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.70814307426659}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Hong Kong"}, "mds2": {"value": 1.6551694907371235}, "mds3": {"value": -7.0309950018227925}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.146117954117487}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001425", "node_attrs": {"div": 7, "num_date": {"value": 2020.2149828609188, "confidence": [2020.1856276508634, 2020.2341362872532]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001426", "node_attrs": {"div": 7, "num_date": {"value": 2020.223672045136, "confidence": [2020.202210935449, 2020.2343033574027]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SLE/KGH-G-8549/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_x": {"value": -12.15852167027958}, "umap_x": {"value": -3.572734}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1354113}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.7967497010902305}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.82710157851557}, "country": {"value": "Sierra Leone"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.004367850733828}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Sierra Leone"}, "mds2": {"value": 0.9025700516705568}, "mds3": {"value": -3.884095311041413}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.27092161816834}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001428", "node_attrs": {"div": 7, "num_date": {"value": 2020.2333584653747, "confidence": [2020.215767353549, 2020.2418032786886]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "FR993628", "node_attrs": {"div": 7, "num_date": {"value": 2020.2418032786886, "confidence": [2020.2418032786886, 2020.2418032786886]}, "tsne_x": {"value": -12.15034026107124}, "umap_x": {"value": -3.5569794}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.136975}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.21783183059769}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.828790103141644}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.414182740232595}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.8670404836111323}, "mds3": {"value": -3.840473520398696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.8796863980962715}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001433", "node_attrs": {"div": 7, "num_date": {"value": 2020.241577415648, "confidence": [2020.2203232743786, 2020.2554628670935]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001200", "node_attrs": {"div": 8, "num_date": {"value": 2020.3272018151438, "confidence": [2020.2759566037882, 2020.3693720687572]}}, "branch_attrs": {"mutations": {"nuc": ["C20234T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-2771/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3784153005465, "confidence": [2020.3784153005465, 2020.3784153005465]}, "tsne_x": {"value": -12.564908758046304}, "umap_x": {"value": -3.025904}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.377036}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.366172366929867}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.120948562904022}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.623596616621099}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.8852139379623541}, "mds3": {"value": -5.230920966874626}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.3029252884524165}}, "branch_attrs": {"mutations": {"nuc": ["A25786G", "C27131T"]}}}, {"name": "NODE_0001435", "node_attrs": {"div": 8, "num_date": {"value": 2020.3610719901528, "confidence": [2020.2864589340197, 2020.490770022893]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-4143/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.5150273224044, "confidence": [2020.5150273224044, 2020.5150273224044]}, "tsne_x": {"value": -12.203767352193069}, "umap_x": {"value": -2.820669}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.413163}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.359235597272238}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.73892526856384}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.316129304858159}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.95318750452179}, "mds3": {"value": -4.833953615696927}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.216522328311573}}, "branch_attrs": {"mutations": {"nuc": ["T25189C"]}}}, {"name": "NODE_0001201", "node_attrs": {"div": 18, "num_date": {"value": 2020.7324645203005, "confidence": [2020.6729404703967, 2020.766257797867]}}, "branch_attrs": {"mutations": {"nuc": ["C5296T", "C6336T", "T12670C", "G16288T", "G21761T", "C21772T", "G23012A", "G28337T", "A28910T", "C29347T"], "S": ["A67S", "E484K"]}, "labels": {"aa": "S: A67S, E484K"}}, "children": [{"name": "ZAF/NHLS-UCT-GS-0625/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8101092896175, "confidence": [2020.8101092896175, 2020.8101092896175]}, "tsne_x": {"value": -9.036637067622053}, "umap_x": {"value": 0.1745414}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.4570804}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.290885453903813}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.304018914994078}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.194597048775089}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Northern Cape"}, "mds2": {"value": 6.184013329320673}, "mds3": {"value": -10.309708580610032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.466887649543534}}, "branch_attrs": {"mutations": {"nuc": ["A28271-"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-3515/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.7718579234972, "confidence": [2020.7718579234972, 2020.7718579234972]}, "tsne_x": {"value": -9.037868674090976}, "umap_x": {"value": 0.15309349}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.4972615}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.921370753476722}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.304449020797316}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.114735438712875}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 6.004199013246568}, "mds3": {"value": -10.55175434439487}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.231879319500209}}, "branch_attrs": {"mutations": {"nuc": ["C7504T", "T20234C"]}}}]}]}]}, {"name": "NODE_0001439", "node_attrs": {"div": 7, "num_date": {"value": 2020.241577415648, "confidence": [2020.2272501238403, 2020.2663722823286]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX813945", "node_attrs": {"div": 15, "num_date": {"value": 2020.3319672131147, "confidence": [2020.3319672131147, 2020.3319672131147]}, "tsne_x": {"value": -14.12542054052802}, "umap_x": {"value": -1.2921324}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2520175}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.521768245242406}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.516127597386909}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.0196697723356487}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": -1.7569472315162076}, "mds3": {"value": -9.033687831288152}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.928917332512581}}, "branch_attrs": {"mutations": {"nuc": ["G5008T", "C18060T", "G19072T", "T21527C", "G21786T", "C25006T", "C27945A", "C28102T"], "S": ["G75V"]}, "labels": {"aa": "S: G75V"}}}, {"name": "NODE_0001440", "node_attrs": {"div": 7, "num_date": {"value": 2020.2573879458162, "confidence": [2020.2295820005986, 2020.3240948962261]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001442", "node_attrs": {"div": 7, "num_date": {"value": 2020.2829519031643, "confidence": [2020.229164567296, 2020.3277333998583]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU799323", "node_attrs": {"div": 8, "num_date": {"value": 2020.3374316939892, "confidence": [2020.3374316939892, 2020.3374316939892]}, "tsne_x": {"value": -12.20541098400219}, "umap_x": {"value": -3.5292957}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1720805}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.004264417757271}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.808209673519572}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.778110857462856}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.9324232233353288}, "mds3": {"value": -4.1085918361772285}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.918117612930008}}, "branch_attrs": {"mutations": {"nuc": ["C25728T"]}}}, {"name": "OU999649", "node_attrs": {"div": 9, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_x": {"value": -12.215512118361143}, "umap_x": {"value": -3.4185793}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1899834}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.963684740378124}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.161"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.915002368522376}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.5817496374958253}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Mecca"}, "mds2": {"value": 0.2609137336325388}, "mds3": {"value": -4.373814400267049}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.94724742087981}}, "branch_attrs": {"mutations": {"nuc": ["G23403A", "G23666C"], "S": ["G614D", "E702Q"]}, "labels": {"aa": "S: G614D, E702Q"}}}]}, {"name": "NODE_0001069", "node_attrs": {"div": 9, "num_date": {"value": 2020.3826907125883, "confidence": [2020.2570712254058, 2020.5453242825342]}}, "branch_attrs": {"mutations": {"nuc": ["A22941T", "G26049T"], "S": ["N460I"]}, "labels": {"aa": "S: N460I"}}, "children": [{"name": "NODE_0001444", "node_attrs": {"div": 9, "num_date": {"value": 2020.478907579997, "confidence": [2020.2481678616161, 2020.5900371562254]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARM/UW-ARM36/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_x": {"value": -13.081265832601863}, "umap_x": {"value": -2.4523222}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.504534}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.057200633678123}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.162577320239295}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.5128756131471337}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": 3.1315898589016697}, "mds3": {"value": -5.853152258161906}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.09630884689606}}, "branch_attrs": {"mutations": {"nuc": ["G8024T", "C15279T"]}}}, {"name": "ARM/UW-ARM37/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.6680327868853, "confidence": [2020.6680327868853, 2020.6680327868853]}, "tsne_x": {"value": -13.56283677044372}, "umap_x": {"value": -1.6210195}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3770723}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.008580993630662}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.533"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "tsne_y": {"value": -13.476823480286203}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.874815895662656}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": 5.6906225539404165}, "mds3": {"value": -5.576250176296989}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.084631552867258}}, "branch_attrs": {"mutations": {"nuc": ["G19180T", "G25244T", "G25563T", "C25886T", "G27666T"], "S": ["V1228L"]}, "labels": {"aa": "S: V1228L"}}}]}, {"name": "NODE_0001071", "node_attrs": {"div": 10, "num_date": {"value": 2020.42438252127, "confidence": [2020.298725239573, 2020.5647387241258]}}, "branch_attrs": {"mutations": {"nuc": ["T19135C"]}}, "children": [{"name": "ARM/UW-ARM6/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5724043715848, "confidence": [2020.5724043715848, 2020.5724043715848]}, "tsne_x": {"value": -13.529038889534116}, "umap_x": {"value": -1.7123592}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5065737}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.056538642595982}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.937037459362772}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.1615005795450415}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": 4.309619284793502}, "mds3": {"value": -6.572103670933685}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.096871153538835}}, "branch_attrs": {"mutations": {"nuc": ["C13620T", "C17470T", "C25460T"]}}}, {"name": "NODE_0001447", "node_attrs": {"div": 10, "num_date": {"value": 2020.4409452178716, "confidence": [2020.3013803578508, 2020.5677048292202]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARM/UW-ARM48/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6844262295083, "confidence": [2020.6844262295083, 2020.6844262295083]}, "tsne_x": {"value": -13.701010324386171}, "umap_x": {"value": -0.5957917}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.016262}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.059696732870028}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.874510386164658}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.230827163950021}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": 7.305975050757083}, "mds3": {"value": -8.668709885259453}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.10933489180624}}, "branch_attrs": {"mutations": {"nuc": ["G3530A", "T3949C", "A5885G", "A11537C", "C20178T", "G29511T"]}}}, {"name": "NODE_0001448", "node_attrs": {"div": 10, "num_date": {"value": 2020.478725283345, "confidence": [2020.2962460420558, 2020.5618428501375]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARM/UW-ARM39/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6653005464482, "confidence": [2020.6653005464482, 2020.6653005464482]}, "tsne_x": {"value": -13.725513282903163}, "umap_x": {"value": 0.21808508}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.437419}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.054493331633577}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.900281344016442}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.622471103137272}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": -7.497610179666716}, "mds3": {"value": -11.43811050480418}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.12118746835198}}, "branch_attrs": {"mutations": {"nuc": ["T5707C", "T6023C", "G17122T", "C21530G", "T21534A", "G21535T", "A21536C", "G25135T"], "S": ["K1191N"]}, "labels": {"aa": "S: K1191N"}}}, {"name": "ARM/UW-ARM33/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.646174863388, "confidence": [2020.646174863388, 2020.646174863388]}, "tsne_x": {"value": -13.753593316045343}, "umap_x": {"value": -0.1637893}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.7454443}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.051964330929248}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.826530466961348}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.419706994580045}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": 9.712998986350623}, "mds3": {"value": -7.729863312604276}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.10283246417613}}, "branch_attrs": {"mutations": {"nuc": ["C1300T", "C2652T", "A3600G", "C7039T", "C8739A", "G21123T", "G29543T"]}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001449", "node_attrs": {"div": 7, "num_date": {"value": 2020.2247388973533, "confidence": [2020.2021442571622, 2020.3078128076652]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001450", "node_attrs": {"div": 7, "num_date": {"value": 2020.2410693980526, "confidence": [2020.21616211256, 2020.3258654288618]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0265/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_x": {"value": -12.161845441043102}, "umap_x": {"value": -3.5231836}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1911306}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.00027325919047}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.872347039015288}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.6173705642529663}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 0.930388375149044}, "mds3": {"value": -4.147167350335778}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.278122234886965}}, "branch_attrs": {"mutations": {"nuc": ["C27509T"]}}}, {"name": "NODE_0001451", "node_attrs": {"div": 7, "num_date": {"value": 2020.2607243496097, "confidence": [2020.2228036022696, 2020.3319672131147]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX957207", "node_attrs": {"div": 8, "num_date": {"value": 2020.3319672131147, "confidence": [2020.3319672131147, 2020.3319672131147]}, "tsne_x": {"value": -12.1837609828601}, "umap_x": {"value": -3.5969238}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1620154}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 31.622336410531787}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.853150338460663}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.2195708866109656}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.9037986317500312}, "mds3": {"value": -4.094604054113207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.218361131917174}}, "branch_attrs": {"mutations": {"nuc": ["A4233G"]}}}, {"name": "NODE_0001452", "node_attrs": {"div": 7, "num_date": {"value": 2020.2832980250694, "confidence": [2020.221564541356, 2020.3333477770436]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S1155/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_x": {"value": -12.77878500209925}, "umap_x": {"value": -2.3936512}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5469704}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.31133584117795}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.414014341203288}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.966258906631013}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Washington"}, "mds2": {"value": 1.016769457748471}, "mds3": {"value": -6.2594531301696525}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.33043402542858}}, "branch_attrs": {"mutations": {"nuc": ["G4162T", "A4197G", "G16813A", "T25783C"]}}}, {"name": "NODE_0001100", "node_attrs": {"div": 8, "num_date": {"value": 2020.3587934334817, "confidence": [2020.2890993398644, 2020.3756830601094]}}, "branch_attrs": {"mutations": {"nuc": ["C25344T"], "S": ["S1261F"]}, "labels": {"aa": "S: S1261F"}}, "children": [{"name": "Cat/CHL/UCH_NRL_025/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3756830601094, "confidence": [2020.3756830601094, 2020.3756830601094]}, "tsne_x": {"value": -12.097463731596823}, "umap_x": {"value": -3.4439473}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.212779}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.959979806541599}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.906133097421732}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.0403177155995578}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Region Metropolitana de Santiago"}, "mds2": {"value": 0.8134701531186639}, "mds3": {"value": -3.432687318218182}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 31.499400691352623}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001101", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4067204068867, 2020.4357923497269]}}, "branch_attrs": {"mutations": {"nuc": ["C14293T", "C18029T", "G29212T"]}}, "children": [{"name": "CHL/Santiago-5092661/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_x": {"value": -12.139528819159038}, "umap_x": {"value": -2.5806787}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5742736}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.57347618105484}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.745625215350964}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.2491327895805053}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 2.3277825662486067}, "mds3": {"value": -5.775100098426017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 15.414138040438772}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-5120610/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_x": {"value": -12.120091365720214}, "umap_x": {"value": -2.852245}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.445073}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.857466808821007}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.749940579011026}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.7459624238583302}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 1.5806926651014856}, "mds3": {"value": -5.699390935489522}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.38750417600067}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0001456", "node_attrs": {"div": 7, "num_date": {"value": 2020.2417049755168, "confidence": [2020.215252886983, 2020.3128415300546]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU808864", "node_attrs": {"div": 8, "num_date": {"value": 2020.3128415300546, "confidence": [2020.3128415300546, 2020.3128415300546]}, "tsne_x": {"value": -12.23958479855978}, "umap_x": {"value": -3.5512245}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1519156}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.011424503501177}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.874420498354189}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.4213982366380176}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.2054150694106163}, "mds3": {"value": -4.430951146841932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.774824941266566}}, "branch_attrs": {"mutations": {"nuc": ["G22992A"], "S": ["S477N"]}, "labels": {"aa": "S: S477N"}}}, {"name": "NODE_0001458", "node_attrs": {"div": 7, "num_date": {"value": 2020.2572926784094, "confidence": [2020.2221061341938, 2020.3480879258184]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001037", "node_attrs": {"div": 12, "num_date": {"value": 2020.410478090975, "confidence": [2020.3523683981723, 2020.4473109536996]}}, "branch_attrs": {"mutations": {"nuc": ["C1419T", "C4158T", "C8318A", "G18859T", "G21624T"], "S": ["R21I"]}, "labels": {"aa": "S: R21I"}}, "children": [{"name": "OA978246", "node_attrs": {"div": 14, "num_date": {"value": 2020.5013661202186, "confidence": [2020.5013661202186, 2020.5013661202186]}, "tsne_x": {"value": -10.344795668195252}, "umap_x": {"value": -1.7439624}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2971396}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.033592740272988}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.279"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.562658540377464}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.4967505254527806}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.348647395048767}, "mds3": {"value": -8.10510976871945}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1406099699075144}}, "branch_attrs": {"mutations": {"nuc": ["C10615T", "C26571A"]}}}, {"name": "OA980881", "node_attrs": {"div": 14, "num_date": {"value": 2020.454918032787, "confidence": [2020.454918032787, 2020.454918032787]}, "tsne_x": {"value": -10.34868461574675}, "umap_x": {"value": -1.860687}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.277227}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.1538875945971694}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.279"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.569123700890554}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.6482552441218423}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.8517364658825374}, "mds3": {"value": -7.802968701781432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0429149872331905}}, "branch_attrs": {"mutations": {"nuc": ["G7042T", "G11083T"]}}}]}, {"name": "NODE_0001460", "node_attrs": {"div": 7, "num_date": {"value": 2020.2855206139266, "confidence": [2020.181429283713, 2020.337969232262]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5593/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3592896174864, "confidence": [2020.3592896174864, 2020.3592896174864]}, "tsne_x": {"value": -12.20275856284674}, "umap_x": {"value": -3.271925}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.31453}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.276016138442146}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.864813128958838}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.9185887751750084}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 1.0536741882393057}, "mds3": {"value": -4.621475815725482}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.653603498897211}}, "branch_attrs": {"mutations": {"nuc": ["C11003T", "G17808T"]}}}, {"name": "NODE_0001461", "node_attrs": {"div": 7, "num_date": {"value": 2020.3126801046894, "confidence": [2020.1767344822274, 2020.3433327085022]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0360/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3592896174864, "confidence": [2020.3592896174864, 2020.3592896174864]}, "tsne_x": {"value": -12.166586127060192}, "umap_x": {"value": -3.3112018}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.295083}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.145834323552353}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.846007734166577}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.819990680001801}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 0.853358063472106}, "mds3": {"value": -4.382095664154569}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 13.400828115242692}}, "branch_attrs": {"mutations": {"nuc": ["G2458A"]}}}, {"name": "NODE_0001462", "node_attrs": {"div": 7, "num_date": {"value": 2020.3209647743931, "confidence": [2020.1784790315264, 2020.4084609894653]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001205", "node_attrs": {"div": 9, "num_date": {"value": 2020.4631147540983, "confidence": [2020.3926061708107, 2020.4631147540983]}}, "branch_attrs": {"mutations": {"nuc": ["C21637T", "A28169G"]}}, "children": [{"name": "OA977452", "node_attrs": {"div": 9, "num_date": {"value": 2020.4631147540983, "confidence": [2020.4631147540983, 2020.4631147540983]}, "tsne_x": {"value": -12.372946633798016}, "umap_x": {"value": -3.478485}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1927156}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.036463242631212}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.581837309308176}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.823811797875992}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.8687234674510809}, "mds3": {"value": -4.605660277337283}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1271984260564678}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001464", "node_attrs": {"div": 9, "num_date": {"value": 2020.4618999559, "confidence": [2020.3687629577184, 2020.5058455531073]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA971308", "node_attrs": {"div": 14, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5887978142077, 2020.5887978142077]}, "tsne_x": {"value": -12.95136337071609}, "umap_x": {"value": -1.6905199}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3135138}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.037905820484621}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.675495561347576}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.4453564598136888}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.736550355367814}, "mds3": {"value": -8.027102914732446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1238760177088905}}, "branch_attrs": {"mutations": {"nuc": ["G219C", "C1347T", "G18412T", "C20736A", "G25644T"]}}}, {"name": "OA968329", "node_attrs": {"div": 12, "num_date": {"value": 2020.6215846994535, "confidence": [2020.6215846994535, 2020.6215846994535]}, "tsne_x": {"value": -12.745872812157897}, "umap_x": {"value": -2.8891904}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.462723}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.116090518039722}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.87793207794691}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.782873754520274}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.1919733346351535}, "mds3": {"value": -5.698584751964392}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.400764450182794}}, "branch_attrs": {"mutations": {"nuc": ["C8683T", "T15682C", "G26152A"]}}}]}]}, {"name": "NODE_0001465", "node_attrs": {"div": 7, "num_date": {"value": 2020.3244288497701, "confidence": [2020.1810303623063, 2020.4108900151587]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-3932/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5751366120219, "confidence": [2020.5751366120219, 2020.5751366120219]}, "tsne_x": {"value": -12.164091974384824}, "umap_x": {"value": -1.1547269}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2334857}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.200983033310171}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.432"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.414059237585418}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.763222125955798}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "California"}, "mds2": {"value": 2.386219738418367}, "mds3": {"value": -8.04649278307004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 9.4330213041949}}, "branch_attrs": {"mutations": {"nuc": ["A6985T", "C9319T", "C12412T", "C13994T", "T14313C", "G15406T", "C25613T"]}}}, {"name": "NODE_0001466", "node_attrs": {"div": 7, "num_date": {"value": 2020.3337739061647, "confidence": [2020.1817034846763, 2020.4108409472185]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001470", "node_attrs": {"div": 7, "num_date": {"value": 2020.34457932485, "confidence": [2020.1814791621257, 2020.4133098420148]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA978014", "node_attrs": {"div": 8, "num_date": {"value": 2020.454918032787, "confidence": [2020.454918032787, 2020.454918032787]}, "tsne_x": {"value": -12.143603474403328}, "umap_x": {"value": -3.5694058}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.146365}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0011988424842455}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.80451452664369}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.137696724499286}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.9098012468568372}, "mds3": {"value": -4.142706760074545}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.3520411019454916}}, "branch_attrs": {"mutations": {"nuc": ["G2035A"]}}}, {"name": "NODE_0001471", "node_attrs": {"div": 7, "num_date": {"value": 2020.3595661310976, "confidence": [2020.1803982718538, 2020.4138235564303]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-3555/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_x": {"value": -10.45845777098236}, "umap_x": {"value": 0.5755601}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.12788}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.064857259293866}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.00584176455659}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.710381493141991}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Oyo State"}, "mds2": {"value": -6.29871295937099}, "mds3": {"value": -13.598251612830191}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0702278201592953}}, "branch_attrs": {"mutations": {"nuc": ["G61T", "C225T", "T11638C", "C11767T", "T13102C", "T15855C", "A16006G", "C21910T", "G25543T", "C25916T", "T27789C", "C29708T"]}}}, {"name": "NODE_0001221", "node_attrs": {"div": 14, "num_date": {"value": 2020.5013661202186, "confidence": [2020.4767939133117, 2020.5013661202186]}}, "branch_attrs": {"mutations": {"nuc": ["G625T", "C13665T", "C15960T", "G16741T", "C26464T", "G29747T", "C29750T"]}}, "children": [{"name": "OA977684", "node_attrs": {"div": 14, "num_date": {"value": 2020.5040983606557, "confidence": [2020.5040983606557, 2020.5040983606557]}, "tsne_x": {"value": -10.35206402073626}, "umap_x": {"value": -1.7922928}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3198123}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.050206654112687}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.992813690221006}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.9284408138310009}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 2.387071809969738}, "mds3": {"value": -7.966657582750826}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0372139591356089}}, "branch_attrs": {"mutations": {}}}, {"name": "OA980366", "node_attrs": {"div": 14, "num_date": {"value": 2020.5013661202186, "confidence": [2020.5013661202186, 2020.5013661202186]}, "tsne_x": {"value": -10.373494334051108}, "umap_x": {"value": -1.8847402}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2781405}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.504793677202564}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.99737654035046}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.7537193094474317}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.0199623080486735}, "mds3": {"value": -6.639042394787296}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 15.99936018652116}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001473", "node_attrs": {"div": 7, "num_date": {"value": 2020.3554852499929, "confidence": [2020.2954169311452, 2020.4348448318156]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA980749", "node_attrs": {"div": 10, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_x": {"value": -12.648078125560318}, "umap_x": {"value": -3.1767561}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.330346}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.046113696899302}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.171"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.54099260101603}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.6781495793128047}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.2036912726511002}, "mds3": {"value": -5.002083957701591}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0633757388681547}}, "branch_attrs": {"mutations": {"nuc": ["A435G", "C1437T", "G29745T"]}}}, {"name": "NODE_0001474", "node_attrs": {"div": 7, "num_date": {"value": 2020.3609545541851, "confidence": [2020.2883412062934, 2020.4399460351792]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001032", "node_attrs": {"div": 8, "num_date": {"value": 2020.4790584157051, "confidence": [2020.348918534693, 2020.5806010928961]}}, "branch_attrs": {"mutations": {"nuc": ["C20233T"]}}, "children": [{"name": "GHA/WACCBIP_nCoV_GS33/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.5806010928961, "confidence": [2020.5806010928961, 2020.5806010928961]}, "tsne_x": {"value": -11.74516530357727}, "umap_x": {"value": -2.7485988}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.50552}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.400882730454818}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.485"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.505923679000851}, "country": {"value": "Ghana"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.5567714436758022}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Ghana"}, "mds2": {"value": 1.530252056750242}, "mds3": {"value": -5.1871357962124405}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.174041073791781}}, "branch_attrs": {"mutations": {"nuc": ["C745T", "G13812T"]}}}, {"name": "OU086031", "node_attrs": {"div": 18, "num_date": {"value": 2021.0753424657535, "confidence": [2021.0753424657535, 2021.0753424657535]}, "tsne_x": {"value": -10.867232408767284}, "umap_x": {"value": 0.038125638}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.678395}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.415308899843299}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.189963821325158}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.111736050814501}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": -6.215003124269376}, "mds3": {"value": -11.111104181085766}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 16.109587579063593}}, "branch_attrs": {"mutations": {"nuc": ["G1738T", "G4960T", "A15477G", "C17518T", "G20134T", "C22210T", "T25312C", "C26681T", "G28056A", "C28603T"]}}}]}, {"name": "NODE_0001477", "node_attrs": {"div": 7, "num_date": {"value": 2020.3717608705563, "confidence": [2020.2890833687347, 2020.4415959522041]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001080", "node_attrs": {"div": 10, "num_date": {"value": 2020.4521857923498, "confidence": [2020.4203064462827, 2020.4521857923498]}}, "branch_attrs": {"mutations": {"nuc": ["T3049C", "G21624T", "G27877T"], "S": ["R21I"]}, "labels": {"aa": "S: R21I"}}, "children": [{"name": "OX586600", "node_attrs": {"div": 10, "num_date": {"value": 2020.4521857923498, "confidence": [2020.4521857923498, 2020.4521857923498]}, "tsne_x": {"value": -11.55422536197148}, "umap_x": {"value": -2.7710118}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.528089}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.796955680189648}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.572133759179446}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.332221611928034}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Wales"}, "mds2": {"value": 1.375595062176254}, "mds3": {"value": -5.281813486157654}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.71016028165127}}, "branch_attrs": {"mutations": {}}}, {"name": "OX562799", "node_attrs": {"div": 12, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_x": {"value": -11.170447160591744}, "umap_x": {"value": -2.407937}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.541791}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.815179290165137}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.42034982669307}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.0145767356814058}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Wales"}, "mds2": {"value": 2.3532081011662123}, "mds3": {"value": -4.722827315863227}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -14.84361914108969}}, "branch_attrs": {"mutations": {"nuc": ["C26013G", "A28523G"]}}}]}, {"name": "NODE_0001479", "node_attrs": {"div": 7, "num_date": {"value": 2020.383897575531, "confidence": [2020.2697620601423, 2020.432067875599]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001480", "node_attrs": {"div": 7, "num_date": {"value": 2020.4113601884646, "confidence": [2020.2666215359993, 2020.437982428525]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX678701", "node_attrs": {"div": 11, "num_date": {"value": 2020.5341530054645, "confidence": [2020.5341530054645, 2020.5341530054645]}, "tsne_x": {"value": -12.831164014543162}, "umap_x": {"value": -2.880897}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.450083}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.008563387667183}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.305432405945169}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.2790747584973858}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.520509457738998}, "mds3": {"value": -5.642237027441407}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.078663200096523}}, "branch_attrs": {"mutations": {"nuc": ["G160T", "C20148T", "A21137G", "T27264G"]}}}, {"name": "NODE_0001039", "node_attrs": {"div": 10, "num_date": {"value": 2020.4817057328244, "confidence": [2020.448244869046, 2020.5013661202186]}}, "branch_attrs": {"mutations": {"nuc": ["A2576T", "C5175T", "C6401T"]}}, "children": [{"name": "OB989700", "node_attrs": {"div": 14, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_x": {"value": -11.91964081097884}, "umap_x": {"value": -1.7411848}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2739887}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.062443192090865}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.312474170942775}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.6967819106838199}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 2.5677153485733304}, "mds3": {"value": -8.08158957406729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0595047135018846}}, "branch_attrs": {"mutations": {"nuc": ["C1150T", "C15738T", "G17259C", "C25096T"]}}}, {"name": "OA973775", "node_attrs": {"div": 11, "num_date": {"value": 2020.5013661202186, "confidence": [2020.5013661202186, 2020.5013661202186]}, "tsne_x": {"value": -12.041419303429532}, "umap_x": {"value": -2.9129472}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.455174}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.022789221622082}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.839634476767916}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.6251450000168743}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.2280375193580158}, "mds3": {"value": -5.635095407959626}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1349564613305727}}, "branch_attrs": {"mutations": {"nuc": ["C26058T"]}}}]}]}, {"name": "NODE_0001482", "node_attrs": {"div": 7, "num_date": {"value": 2020.4108910386333, "confidence": [2020.2646738177145, 2020.5150273224044]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV293/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.5150273224044, "confidence": [2020.5150273224044, 2020.5150273224044]}, "tsne_x": {"value": -12.192307747871268}, "umap_x": {"value": -3.4726777}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2107315}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.908539627481077}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.83635586228511}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.192581685048218}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Nigeria"}, "mds2": {"value": 1.0076190664004685}, "mds3": {"value": -4.169718651232785}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -17.400984187670176}}, "branch_attrs": {"mutations": {"nuc": ["G21985A"]}}}, {"name": "NODE_0001483", "node_attrs": {"div": 7, "num_date": {"value": 2020.4121633249833, "confidence": [2020.26741808486, 2020.5285470283059]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001193", "node_attrs": {"div": 18, "num_date": {"value": 2020.6396985466722, "confidence": [2020.5677364238993, 2020.6653005464482]}}, "branch_attrs": {"mutations": {"nuc": ["A1163T", "T3256C", "C5622T", "G14202T", "G19542T", "C19718T", "C22388T", "C26060T", "G29227T", "C29466T", "A29771G"]}}, "children": [{"name": "OA973743", "node_attrs": {"div": 19, "num_date": {"value": 2020.6653005464482, "confidence": [2020.6653005464482, 2020.6653005464482]}, "tsne_x": {"value": -15.863080884932211}, "umap_x": {"value": 0.14306659}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.5972695}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.922203753789074}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "AD.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.612665726031612}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.6129095604264174}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": -4.844361281311783}, "mds3": {"value": -13.371115092717089}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0803465555663553}}, "branch_attrs": {"mutations": {"nuc": ["G27987T"]}}}, {"name": "NODE_0001485", "node_attrs": {"div": 18, "num_date": {"value": 2020.6512116331187, "confidence": [2020.5688965615502, 2020.6944621758023]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD900351", "node_attrs": {"div": 24, "num_date": {"value": 2020.870218579235, "confidence": [2020.870218579235, 2020.870218579235]}, "tsne_x": {"value": -15.891296631223335}, "umap_x": {"value": 1.2098242}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.4332466}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.564448752515331}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "AD.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.619005661665325}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.254651450397168}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 20.6234896294728}, "mds3": {"value": -6.718144382322056}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.04686051585483}}, "branch_attrs": {"mutations": {"nuc": ["C7162T", "A10323G", "A10375G", "A18798G", "C24382T", "A27455G"]}}}, {"name": "TWN/CGMH-CGU-39/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.8346994535518, "confidence": [2020.8346994535518, 2020.8346994535518]}, "tsne_x": {"value": -15.895013901134838}, "umap_x": {"value": 1.4783463}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.1027484}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.828712662292722}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "AD.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.621739859115117}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 13.127047720875906}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Taiwan"}, "mds2": {"value": -19.98225554399536}, "mds3": {"value": -8.972105974323743}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -19.896550518140803}}, "branch_attrs": {"mutations": {"nuc": ["G2086T", "A7766T", "G11083T", "T15771A", "C17977T", "T18429C", "G29402T"]}}}]}]}, {"name": "NODE_0001487", "node_attrs": {"div": 7, "num_date": {"value": 2020.4318283250109, "confidence": [2020.2647196701641, 2020.5328156834023]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/17174/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5969945355191, "confidence": [2020.5969945355191, 2020.5969945355191]}, "tsne_x": {"value": -12.303880009548106}, "umap_x": {"value": -1.9039423}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5392957}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.58666338326342}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "tsne_y": {"value": -13.710001220593393}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.686621723147759}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Rio de Janeiro"}, "mds2": {"value": 1.500584270246481}, "mds3": {"value": -7.038492548350426}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.489299551508417}}, "branch_attrs": {"mutations": {"nuc": ["C1473T", "A14550G", "C21691T", "G25088T", "C25427T"], "S": ["V1176F"]}, "labels": {"aa": "S: V1176F"}}}, {"name": "NODE_0001489", "node_attrs": {"div": 7, "num_date": {"value": 2020.4498000701406, "confidence": [2020.2632587304963, 2020.5366577498587]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GHA/WACCBIP_nCoV_GS10/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5751366120219, "confidence": [2020.5751366120219, 2020.5751366120219]}, "tsne_x": {"value": -12.895469103008514}, "umap_x": {"value": -2.8878853}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4540987}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 45.37503816003323}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.368673461591944}, "country": {"value": "Ghana"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 1.3551917024096094}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Ghana"}, "mds2": {"value": 1.1172039580457067}, "mds3": {"value": -5.521420451724693}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.402300369418386}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "C11102T", "C14937A", "T16242C"]}}}, {"name": "NODE_0001490", "node_attrs": {"div": 7, "num_date": {"value": 2020.4819876253175, "confidence": [2020.2247293589016, 2020.5890158873913]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001054", "node_attrs": {"div": 12, "num_date": {"value": 2020.6834847586395, "confidence": [2020.6396077184952, 2020.6844262295083]}}, "branch_attrs": {"mutations": {"nuc": ["G1042A", "C1427T", "A3472G", "C12253T", "G19656A"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1849/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.6844262295083, "confidence": [2020.6844262295083, 2020.6844262295083]}, "tsne_x": {"value": -13.291118559824252}, "umap_x": {"value": -1.8260002}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5379777}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.2752124759256}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.507"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.242520558486996}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.681591971177686}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 2.411909587544298}, "mds3": {"value": -6.898486015499132}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.917489031213298}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001493", "node_attrs": {"div": 12, "num_date": {"value": 2020.7028076365611, "confidence": [2020.6706792018513, 2020.7035519125684]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-2088/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.7281420765028, "confidence": [2020.7281420765028, 2020.7281420765028]}, "tsne_x": {"value": -13.2933938430004}, "umap_x": {"value": -1.9164402}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5548587}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.612389628024436}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.507"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.241382563422407}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.825139908732344}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 2.201743476250626}, "mds3": {"value": -6.9540265942400445}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -13.553062350681426}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GS-2022/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_x": {"value": -13.282749020030952}, "umap_x": {"value": -2.1267776}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.585948}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.007327241066768}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.507"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.252607836375107}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.5207517011057257}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 4.013975015592053}, "mds3": {"value": -6.387125005074824}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.334104967887194}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001494", "node_attrs": {"div": 7, "num_date": {"value": 2020.5050572629862, "confidence": [2020.2247307956047, 2020.5922107642002]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001495", "node_attrs": {"div": 7, "num_date": {"value": 2020.5139969854079, "confidence": [2020.226101204281, 2020.599549579042]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MW294011", "node_attrs": {"div": 21, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_x": {"value": -11.078606561305431}, "umap_x": {"value": 1.0442694}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.6222868}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.965397166321737}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.161"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.646566066851754}, "country": {"value": "Ecuador"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.633936725268546}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Ecuador"}, "mds2": {"value": -12.539474681245416}, "mds3": {"value": -12.63191916398208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -19.945617854284947}}, "branch_attrs": {"mutations": {"nuc": ["G2398A", "G3122C", "T3127C", "G3878A", "C5817T", "C5842T", "A14033G", "C18029T", "C18788T", "G23403A", "C24034T", "G25526T", "C28770T", "G28903T"], "S": ["G614D"]}, "labels": {"aa": "S: G614D"}}}, {"name": "NODE_0001496", "node_attrs": {"div": 7, "num_date": {"value": 2020.5415441489931, "confidence": [2020.2247456469975, 2020.6081465919]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0517/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -13.854089049519867}, "umap_x": {"value": -0.2525744}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.7754445}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.851591104654643}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.62404082184066}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.826032852684282}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Auckland"}, "mds2": {"value": 2.552650309277344}, "mds3": {"value": -9.644265944665117}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.498544911306787}}, "branch_attrs": {"mutations": {"nuc": ["A4851G", "G5230T", "C8251T", "C11575T", "C13517T", "C18714T", "C24378T", "C28737T", "T28879C"], "S": ["S939F"]}, "labels": {"aa": "S: S939F"}}}, {"name": "USA/TG796483/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7909836065573, "confidence": [2020.7909836065573, 2020.7909836065573]}, "tsne_x": {"value": -10.05439983865332}, "umap_x": {"value": -0.57731515}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.9783797}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 45.656920933864285}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.135543438406492}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 0.9318081305073628}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Arizona"}, "mds2": {"value": 9.17021803513601}, "mds3": {"value": -5.449354276127843}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -11.900899388395311}}, "branch_attrs": {"mutations": {"nuc": ["C1457T", "C5140T", "C7423T", "T10107C", "C11967T", "C19032T", "C23683T", "A27868T", "A29700G"]}}}]}]}, {"name": "NODE_0001497", "node_attrs": {"div": 7, "num_date": {"value": 2020.5413777862868, "confidence": [2020.1873968847033, 2020.7281452875343]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0997/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -12.426078903797288}, "umap_x": {"value": -1.2605456}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2537203}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.325196847307647}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.294623795359058}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.6833811517265045}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 5.516370966037922}, "mds3": {"value": -7.543847256497081}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -8.225855956801562}}, "branch_attrs": {"mutations": {"nuc": ["C5348T", "C11074T", "T12503C", "T22045C", "G25951T", "C26681T", "C29721T"]}}}, {"name": "NODE_0001498", "node_attrs": {"div": 7, "num_date": {"value": 2020.586695833715, "confidence": [2020.1831047138826, 2020.7332128769242]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0015/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -10.771384690609064}, "umap_x": {"value": 0.067010656}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.4963617}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.025588605769571}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.236852751429993}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.05583446799283}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Auckland"}, "mds2": {"value": -0.7771380474484336}, "mds3": {"value": -12.606675617992742}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1149599740959021}}, "branch_attrs": {"mutations": {"nuc": ["C2485T", "C7488T", "C8917T", "G9389A", "C18568T", "G22216T", "G27952T", "G28736T", "C28770T", "C29367T"], "S": ["Q218H"]}, "labels": {"aa": "S: Q218H"}}}, {"name": "NODE_0001500", "node_attrs": {"div": 7, "num_date": {"value": 2020.6060446743732, "confidence": [2020.1845211801788, 2020.749339521117]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/210202-1/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.0863013698631, "confidence": [2021.0863013698631, 2021.0863013698631]}, "tsne_x": {"value": -14.11440230443704}, "umap_x": {"value": 0.74110425}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.9447165}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.9294767760090386}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.671750641633023}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.863874466095954}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Brazil"}, "mds2": {"value": 10.073648845583287}, "mds3": {"value": -10.194827209742986}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.93622753429123}}, "branch_attrs": {"mutations": {"nuc": ["C593T", "A1967G", "C8982T", "T10421G", "G10793T", "C15579T", "C17518T", "C18501T", "A20112T", "A23122T", "C25587T", "A25900G", "C29119T"]}}}, {"name": "SAU/KAIMRC-S451/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_x": {"value": -10.714218267407238}, "umap_x": {"value": 0.63480014}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.060009}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.523714609987565}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.481144420681652}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.3485767844078034}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Riyadh"}, "mds2": {"value": -10.481747259285816}, "mds3": {"value": -12.983519348035768}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.26268785721478}}, "branch_attrs": {"mutations": {"nuc": ["C5974T", "C9891T", "C10341T", "C11450A", "A18504G", "A19779G", "C21707T", "T22032C", "A23064C", "C23248T", "A26927G", "T27206C", "A28271-", "A28523G"], "S": ["H49Y", "F157S", "N501T"]}, "labels": {"aa": "S: H49Y, F157S, N501T"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001501", "node_attrs": {"div": 7, "num_date": {"value": 2020.181846517542, "confidence": [2020.1435392007775, 2020.2312801748951]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001504", "node_attrs": {"div": 7, "num_date": {"value": 2020.2005035559594, "confidence": [2020.1568917516126, 2020.2579474093493]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001165", "node_attrs": {"div": 12, "num_date": {"value": 2020.320131767504, "confidence": [2020.235800929206, 2020.3355424749398]}}, "branch_attrs": {"mutations": {"nuc": ["A489G", "T5465C", "G6387A", "G21624T", "G24102A"], "S": ["R21I", "R847K"]}, "labels": {"aa": "S: R21I, R847K"}}, "children": [{"name": "OX584817", "node_attrs": {"div": 16, "num_date": {"value": 2020.3592896174864, "confidence": [2020.3592896174864, 2020.3592896174864]}, "tsne_x": {"value": -9.947745657162534}, "umap_x": {"value": -0.46482968}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.9486446}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 13.931655189224813}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.511027011290174}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.992596630931664}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Wales"}, "mds2": {"value": -2.295641371148286}, "mds3": {"value": -8.52910516002198}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.054767142164867}}, "branch_attrs": {"mutations": {"nuc": ["G626T", "C11124T", "C21575T", "G29648T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "OX665101", "node_attrs": {"div": 15, "num_date": {"value": 2020.441256830601, "confidence": [2020.441256830601, 2020.441256830601]}, "tsne_x": {"value": -9.985992133269969}, "umap_x": {"value": -1.1185294}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.14811}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 28.88739857415344}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.502247624351646}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -1.9316981050411808}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.5516465631842336}, "mds3": {"value": -9.274192649253957}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.586327468832844}}, "branch_attrs": {"mutations": {"nuc": ["C24138T", "A25800T", "A25801T"], "S": ["T859I"]}, "labels": {"aa": "S: T859I"}}}]}, {"name": "NODE_0001166", "node_attrs": {"div": 8, "num_date": {"value": 2020.3201379166876, "confidence": [2020.1562502280597, 2020.3908629574032]}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}, "children": [{"name": "NODE_0001167", "node_attrs": {"div": 9, "num_date": {"value": 2020.3783498956755, "confidence": [2020.2825216587994, 2020.4193989071039]}}, "branch_attrs": {"mutations": {"nuc": ["C3373A"]}}, "children": [{"name": "EGY/CUNCI-HGC4I023/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_x": {"value": -12.295319072700654}, "umap_x": {"value": -2.612077}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5015326}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.463426382794868}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.158785265170492}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.826398887723121}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Egypt"}, "mds2": {"value": 2.1048251709104}, "mds3": {"value": -5.768179874739702}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.557042935541767}}, "branch_attrs": {"mutations": {"nuc": ["G16846T", "T21992-", "A21993-", "T21994-"], "S": ["Y144-"]}, "labels": {"aa": "S: Y144-"}}}, {"name": "EGY/EGY_CCHE57357_P_24/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.47131147541, "confidence": [2020.47131147541, 2020.47131147541]}, "tsne_x": {"value": -12.468557230606594}, "umap_x": {"value": -2.3770103}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5369096}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.954863007518157}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.014396776355277}, "country": {"value": "Egypt"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.9744513351347113}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Egypt"}, "mds2": {"value": 1.987979029716137}, "mds3": {"value": -5.961931619311493}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.986106940048725}}, "branch_attrs": {"mutations": {"nuc": ["A518G", "G29766A"]}}}]}, {"name": "NODE_0001508", "node_attrs": {"div": 8, "num_date": {"value": 2020.3267337722434, "confidence": [2020.1668363970575, 2020.404159637089]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/SEARCH-102047/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.5150273224044, "confidence": [2020.5150273224044, 2020.5150273224044]}, "tsne_x": {"value": -11.904477471260304}, "umap_x": {"value": 0.11909674}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.61612}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.89871957211249}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.712263025748683}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.886251609167187}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "California"}, "mds2": {"value": 12.137277567830273}, "mds3": {"value": -6.925700870164443}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 21.51316564817468}}, "branch_attrs": {"mutations": {"nuc": ["G242T", "C313T", "T689C", "C2147T", "C4455T", "C5806T", "C12008T", "C20405T", "G25229A", "T29646C"], "S": ["G1223S"]}, "labels": {"aa": "S: G1223S"}}}, {"name": "NODE_0001509", "node_attrs": {"div": 8, "num_date": {"value": 2020.3639954424161, "confidence": [2020.1561145629805, 2020.4976134563892]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA984571", "node_attrs": {"div": 11, "num_date": {"value": 2020.6352459016393, "confidence": [2020.6352459016393, 2020.6352459016393]}, "tsne_x": {"value": -12.371685155679634}, "umap_x": {"value": -2.9337323}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.439705}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.035105220756764}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.115"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.025791050282429}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.7229708657103959}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 0.9665622700127896}, "mds3": {"value": -5.613839979102555}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1398905780767139}}, "branch_attrs": {"mutations": {"nuc": ["C1077T", "G26918T", "T29464C"]}}}, {"name": "NODE_0001510", "node_attrs": {"div": 8, "num_date": {"value": 2020.4104832192616, "confidence": [2020.1511716864948, 2020.501009440045]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA989835", "node_attrs": {"div": 18, "num_date": {"value": 2020.73087431694, "confidence": [2020.73087431694, 2020.73087431694]}, "tsne_x": {"value": -10.978091887272315}, "umap_x": {"value": 0.049230397}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.708371}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.017800677726433}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.567512578309795}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.027441722358635}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": -2.899649136755692}, "mds3": {"value": -12.12863511146262}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0593919020866493}}, "branch_attrs": {"mutations": {"nuc": ["C2644T", "C3117T", "C13862T", "T15978C", "T19839C", "G27798T", "G28180T", "T28382C", "C28957T", "G29808T"]}}}, {"name": "FRA/IHUCOVID-012656_Nova1/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7226775956285, "confidence": [2020.7226775956285, 2020.7226775956285]}, "tsne_x": {"value": -12.530082562569824}, "umap_x": {"value": -0.1967727}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.8287325}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.604228248762921}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.241"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.225943995772468}, "country": {"value": "France"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.4477498652477234}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "France"}, "mds2": {"value": -4.485000495849292}, "mds3": {"value": -11.10368552183446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 10.543830034584504}}, "branch_attrs": {"mutations": {"nuc": ["C934T", "A11782G", "C16393T", "A20003C", "T21570G", "C24083T", "C24138T", "T25473C", "C28253T"], "S": ["V3G", "L841F", "T859I"]}, "labels": {"aa": "S: V3G, L841F, T859I"}}}]}]}]}]}]}, {"name": "NODE_0001511", "node_attrs": {"div": 7, "num_date": {"value": 2020.2005031044125, "confidence": [2020.165345340239, 2020.2337641598306]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001512", "node_attrs": {"div": 7, "num_date": {"value": 2020.2021985101774, "confidence": [2020.1815810643766, 2020.2347510637114]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001058", "node_attrs": {"div": 8, "num_date": {"value": 2020.2496705293563, "confidence": [2020.220120990265, 2020.372950819672]}}, "branch_attrs": {"mutations": {"nuc": ["G28141T"]}}, "children": [{"name": "NGA/CV346/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.372950819672, "confidence": [2020.372950819672, 2020.372950819672]}, "tsne_x": {"value": -12.584535019047085}, "umap_x": {"value": -2.3923972}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.514828}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.5161195427252685}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.512585798993207}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.5250394564524923}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Nigeria"}, "mds2": {"value": 2.9531144498391564}, "mds3": {"value": -5.379038847327882}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -1.758431223811911}}, "branch_attrs": {"mutations": {"nuc": ["G6533T", "G25456T", "G25471T"]}}}, {"name": "BHR/341475551/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.1054794520549, "confidence": [2021.1054794520549, 2021.1054794520549]}, "tsne_x": {"value": -13.932265675245093}, "umap_x": {"value": 1.1517053}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.4916317}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.3788932421525057}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.853622931460018}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 17.268397943621746}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bahrain"}, "mds2": {"value": 13.89347017750876}, "mds3": {"value": -9.399759460922716}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.349623199752598}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "A1163T", "A3538G", "G3539T", "C4540T", "A7451G", "A8254G", "T9022C", "C9430T", "C10252T", "T21015A", "G25912T", "T27776A", "C27920T"]}}}]}, {"name": "NODE_0001514", "node_attrs": {"div": 7, "num_date": {"value": 2020.2160530739295, "confidence": [2020.1979735432953, 2020.2409788042717]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001030", "node_attrs": {"div": 8, "num_date": {"value": 2020.3239532195626, "confidence": [2020.2420378181923, 2020.3794094325685]}}, "branch_attrs": {"mutations": {"nuc": ["G16853T"]}}, "children": [{"name": "ZAF/NHLS-UCT-GS-4311/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_x": {"value": -11.671085167851398}, "umap_x": {"value": -2.588183}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4901752}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.368480657800942}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.382"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.880571595782934}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.809343155234726}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Western Cape Province"}, "mds2": {"value": 1.3094302869653147}, "mds3": {"value": -5.491918215301233}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.2990086783364865}}, "branch_attrs": {"mutations": {"nuc": ["G1820T", "G6368A"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-4282/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.47131147541, "confidence": [2020.47131147541, 2020.47131147541]}, "tsne_x": {"value": -10.951468298835742}, "umap_x": {"value": -1.7996281}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5012016}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 50.88837555460467}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.34"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.96976276492006}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 5.7608112042331685}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 3.503957954767159}, "mds3": {"value": -7.029810766406185}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.643080117074602}}, "branch_attrs": {"mutations": {"nuc": ["C2094T", "C11339T", "C11916T", "C15720T", "C23380T"]}}}]}, {"name": "NODE_0001024", "node_attrs": {"div": 8, "num_date": {"value": 2020.235011901602, "confidence": [2020.2188441023272, 2020.2445355191257]}}, "branch_attrs": {"mutations": {"nuc": ["C3961T"]}}, "children": [{"name": "BGD/BCSIR_NILMRC_349/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_x": {"value": -13.39879908600363}, "umap_x": {"value": -1.9141498}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5884576}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.968353371175912}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.164110787098137}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.691138306713409}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangladesh"}, "mds2": {"value": -0.0308396098004836}, "mds3": {"value": -7.44575448551931}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.95720137401585}}, "branch_attrs": {"mutations": {"nuc": ["A1163T", "C15656T", "C16260T", "C18582T"]}}}, {"name": "CHL/Santiago-PUC_MVL_0085/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2445355191257, "confidence": [2020.2445355191257, 2020.2445355191257]}, "tsne_x": {"value": -12.23243063862649}, "umap_x": {"value": -3.340277}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2675896}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.966054640838211}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.931113136205049}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.153245833484573}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Chile"}, "mds2": {"value": 1.3575397038337609}, "mds3": {"value": -4.707317564095581}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.048597750604896}}, "branch_attrs": {"mutations": {"nuc": ["C2110T"]}}}]}]}]}, {"name": "NODE_0001517", "node_attrs": {"div": 7, "num_date": {"value": 2020.2148628823966, "confidence": [2020.1837924124798, 2020.2580129461105]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001520", "node_attrs": {"div": 7, "num_date": {"value": 2020.2170603307316, "confidence": [2020.1930655477877, 2020.2623819311907]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001521", "node_attrs": {"div": 7, "num_date": {"value": 2020.2398771059, "confidence": [2020.1923218702061, 2020.2646454473422]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1303/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2745901639344, "confidence": [2020.2745901639344, 2020.2745901639344]}, "tsne_x": {"value": -12.20119201039626}, "umap_x": {"value": -2.8524916}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3891973}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.75175736969261}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.775251656505814}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.966513227410101}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Victoria"}, "mds2": {"value": 0.8571824244699993}, "mds3": {"value": -4.87360693064894}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.60592317600805}}, "branch_attrs": {"mutations": {"nuc": ["G1658T", "G8102T"]}}}, {"name": "NODE_0001220", "node_attrs": {"div": 8, "num_date": {"value": 2020.3290274071996, "confidence": [2020.265605768665, 2020.4444874763112]}}, "branch_attrs": {"mutations": {"nuc": ["C16750T"]}}, "children": [{"name": "ARM/UW-ARM10/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.577868852459, "confidence": [2020.577868852459, 2020.577868852459]}, "tsne_x": {"value": -13.752022282991332}, "umap_x": {"value": -1.5255209}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3376207}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.079532752607452}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.502744849561251}, "country": {"value": "Armenia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.3963196486953919}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Armenia"}, "mds2": {"value": 4.004795211259858}, "mds3": {"value": -7.085117179287031}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.08812166393363}}, "branch_attrs": {"mutations": {"nuc": ["C3177T", "C18060T", "C23059T", "T23113C", "G28221T", "C29550T"]}}}, {"name": "RUS/Primorye_4863/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_x": {"value": -10.731661719154635}, "umap_x": {"value": 0.07697277}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.7725496}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.067296683075465}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.416521499735095}, "country": {"value": "Russia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.9975994787317293}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Russia"}, "mds2": {"value": -5.799838060741473}, "mds3": {"value": -12.53931944708934}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 12.984952224293547}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "A1777G", "A2869G", "A10323G", "G13617T", "G18363A", "T23599A", "G25481A", "G28321T", "C29095T"], "S": ["N679K"]}, "labels": {"aa": "S: N679K"}}}]}]}, {"name": "NODE_0001523", "node_attrs": {"div": 7, "num_date": {"value": 2020.2343030434934, "confidence": [2020.1840001427988, 2020.2674736519918]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001525", "node_attrs": {"div": 7, "num_date": {"value": 2020.2521493872878, "confidence": [2020.1507604194057, 2020.370716128824]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001195", "node_attrs": {"div": 8, "num_date": {"value": 2020.3287496337198, "confidence": [2020.1737727201207, 2020.4294820569257]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "Switzerland/BS-UHB-42341282/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5122950819673, "confidence": [2020.5122950819673, 2020.5122950819673]}, "tsne_x": {"value": -12.855969006300516}, "umap_x": {"value": -2.539624}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5545425}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.149679365647647}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.283456123788955}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.7749164756741584}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Basel-Stadt"}, "mds2": {"value": 1.3883086066444108}, "mds3": {"value": -5.830027572426812}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.740087431370778}}, "branch_attrs": {"mutations": {"nuc": ["A68T", "G5138C", "A20742C"]}}}, {"name": "NODE_0001196", "node_attrs": {"div": 11, "num_date": {"value": 2020.4400908363307, "confidence": [2020.2956099092473, 2020.5163340914817]}}, "branch_attrs": {"mutations": {"nuc": ["G204T", "A20374G", "C21627T"], "S": ["T22I"]}, "labels": {"aa": "S: T22I"}}, "children": [{"name": "NGA/BCVL-3601/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_x": {"value": -11.516608064619774}, "umap_x": {"value": -0.9150527}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.150136}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.399958139479593}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.886458579014942}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.8420683017378925}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Oyo State"}, "mds2": {"value": 6.1753740117619}, "mds3": {"value": -6.813383781185539}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.0196383969560898}}, "branch_attrs": {"mutations": {"nuc": ["A7448G", "C13881T", "G21800T", "T25434C", "G29742T"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}}, {"name": "NGA/CV645/2021", "node_attrs": {"div": 19, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_x": {"value": -14.34832831567006}, "umap_x": {"value": 0.10677901}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.7039065}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.250718486547776}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.527146772607722}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.5904655561600425}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Nigeria"}, "mds2": {"value": 3.715709508552849}, "mds3": {"value": -9.732709549115029}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.52050891941423}}, "branch_attrs": {"mutations": {"nuc": ["C4784T", "A16026G", "G19518T", "T22917G", "C24034T", "G26065T", "G26152T", "G26167C"], "S": ["L452R"]}, "labels": {"aa": "S: L452R"}}}]}]}, {"name": "NODE_0001213", "node_attrs": {"div": 8, "num_date": {"value": 2020.360429429261, "confidence": [2020.2780599775213, 2020.398709243871]}}, "branch_attrs": {"mutations": {"nuc": ["G9890T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-6014/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4166666666667, "confidence": [2020.4166666666667, 2020.4166666666667]}, "tsne_x": {"value": -11.979323582145575}, "umap_x": {"value": -2.2743537}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.603905}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.189107529322501}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.065154240038606}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.387865868376694}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.9451941099181098}, "mds3": {"value": -6.245486253515395}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.092304402217232}}, "branch_attrs": {"mutations": {"nuc": ["G10396T", "G13249T", "A15847C"]}}}, {"name": "NODE_0001214", "node_attrs": {"div": 9, "num_date": {"value": 2020.6814897614015, "confidence": [2020.584919396589, 2020.714480874317]}}, "branch_attrs": {"mutations": {"nuc": ["C18664T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-2074/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_x": {"value": -12.058763651903584}, "umap_x": {"value": -2.6669662}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5120773}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.752547436545482}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.35149605594398}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.666567390143016}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 0.981727229980593}, "mds3": {"value": -5.396599495065148}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.495533784494429}}, "branch_attrs": {"mutations": {"nuc": ["C4893T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-2141/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_x": {"value": -12.154394100749215}, "umap_x": {"value": -2.9272707}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.3882165}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.027540979197805}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.604366647911172}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.5317816541306417}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "South Africa"}, "mds2": {"value": 1.0467405217901795}, "mds3": {"value": -4.765122944828346}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.876008910759404}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001530", "node_attrs": {"div": 7, "num_date": {"value": 2020.2469992214901, "confidence": [2020.1841705295967, 2020.2713179189698]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001531", "node_attrs": {"div": 7, "num_date": {"value": 2020.2606824839513, "confidence": [2020.1976393984671, 2020.2746624650458]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ISR/hCov-19-Israel-CVL-n-11594/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3155737704917, "confidence": [2020.3155737704917, 2020.3155737704917]}, "tsne_x": {"value": -12.157147149309866}, "umap_x": {"value": -3.5452685}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2280526}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.961731601335619}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.822499289458888}, "country": {"value": "Israel"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.417541830246092}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Israel"}, "mds2": {"value": 0.9260685999349638}, "mds3": {"value": -3.963273957610372}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.94365450723644}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20VR3033/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2773224043715, "confidence": [2020.2773224043715, 2020.2773224043715]}, "tsne_x": {"value": -12.204033242063694}, "umap_x": {"value": -3.5616267}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.1461163}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.585503369660819}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.814383734310374}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.4550311113566337}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "New Zealand"}, "mds2": {"value": 0.9053173128689188}, "mds3": {"value": -4.108316341559527}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -6.412454092460955}}, "branch_attrs": {"mutations": {"nuc": ["C27812T"]}}}]}, {"name": "NODE_0001318", "node_attrs": {"div": 8, "num_date": {"value": 2020.2664256919652, "confidence": [2020.1829122037898, 2020.3409045805033]}}, "branch_attrs": {"mutations": {"nuc": ["C313T"]}}, "children": [{"name": "NODE_0001323", "node_attrs": {"div": 9, "num_date": {"value": 2020.360556829987, "confidence": [2020.2605216848874, 2020.5560211880809]}}, "branch_attrs": {"mutations": {"nuc": ["C23604A"], "S": ["P681H"]}, "labels": {"aa": "S: P681H"}}, "children": [{"name": "IND/GBRC516a/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_x": {"value": -11.17527261296124}, "umap_x": {"value": 0.5728916}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.126301}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.545498725355498}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.11474147110613}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.264539105244423}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "India"}, "mds2": {"value": -5.60479055170656}, "mds3": {"value": -17.467252860718858}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.5816618615358125}}, "branch_attrs": {"mutations": {"nuc": ["C1218T", "A5570G", "G5572T", "C5700A", "C6883T", "C8683T", "A10874G", "C20384T", "T20949C", "T25736C", "G28209C"]}}}, {"name": "NODE_0001535", "node_attrs": {"div": 9, "num_date": {"value": 2020.4109634749145, "confidence": [2020.2556788085676, 2020.5620105274143]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "WestBank/AAS25/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.9112021857923, "confidence": [2020.9112021857923, 2020.9112021857923]}, "tsne_x": {"value": -11.900551677438756}, "umap_x": {"value": 1.4197316}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.1819758}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.909920705377933}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.50"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.884001773316465}, "country": {"value": "Palestine"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 15.302317419272685}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Qalqilya"}, "mds2": {"value": 21.257113982357577}, "mds3": {"value": -7.437095359328952}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.80960531100971}}, "branch_attrs": {"mutations": {"nuc": ["G4510A", "C7765T", "C13821T", "C13967T", "G14575T", "G15438T", "T21111C", "G21641T", "G25785T", "G26718T", "G27382T", "C27741T", "G29179T", "G29260T", "C29545A", "T29867-", "G29868A"], "S": ["A27S"]}, "labels": {"aa": "S: A27S"}}}, {"name": "NODE_0001325", "node_attrs": {"div": 18, "num_date": {"value": 2020.8863929513204, "confidence": [2020.829441116297, 2020.9084699453551]}}, "branch_attrs": {"mutations": {"nuc": ["A7097G", "T9172C", "A10948G", "C10977T", "A24874G", "C25624T", "G26730T", "A26927G", "G29027T"]}}, "children": [{"name": "NZL/20CV0612/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9084699453551, "confidence": [2020.9084699453551, 2020.9084699453551]}, "tsne_x": {"value": -9.35020700381697}, "umap_x": {"value": 0.20529856}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.4865603}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0259189216611215}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.207"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.425204975572058}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.2544635644361376}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Auckland"}, "mds2": {"value": -2.6438345934710696}, "mds3": {"value": -14.901747056702588}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.106610443178628}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20CV0608/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.9112021857923, "confidence": [2020.9112021857923, 2020.9112021857923]}, "tsne_x": {"value": -9.34157845856402}, "umap_x": {"value": 0.12867592}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.642}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.025722456491982}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.207"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.429604083983037}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.3768268899556455}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Auckland"}, "mds2": {"value": -1.861105644028564}, "mds3": {"value": -13.534297239540132}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1072687813047069}}, "branch_attrs": {"mutations": {"nuc": ["C676T"]}}}]}]}]}, {"name": "NODE_0001537", "node_attrs": {"div": 8, "num_date": {"value": 2020.2908591726814, "confidence": [2020.1810818551708, 2020.33968885914]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX550813", "node_attrs": {"div": 12, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_x": {"value": -11.51243410200703}, "umap_x": {"value": -1.8274624}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.505689}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.995176741710988}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.821527493154491}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.801985000191515}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Wales"}, "mds2": {"value": 1.0587982521467934}, "mds3": {"value": -7.222969556189248}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.710014939992035}}, "branch_attrs": {"mutations": {"nuc": ["A2127G", "C17135T", "T18672C", "G26849T"]}}}, {"name": "NODE_0001538", "node_attrs": {"div": 8, "num_date": {"value": 2020.32102643392, "confidence": [2020.1774989192597, 2020.3481005693372]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001326", "node_attrs": {"div": 9, "num_date": {"value": 2020.3472526697617, "confidence": [2020.2937974521801, 2020.382307943059]}}, "branch_attrs": {"mutations": {"nuc": ["C5700A"]}}, "children": [{"name": "IND/BCGCOVID19003/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4112021857923, "confidence": [2020.4112021857923, 2020.4112021857923]}, "tsne_x": {"value": -11.45949890981668}, "umap_x": {"value": -1.984894}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.468756}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.285568913373151}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.445788767688942}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.8949328609773554}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Maharashtra"}, "mds2": {"value": -1.6815766076827243}, "mds3": {"value": -7.509732552746494}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 14.929905663505584}}, "branch_attrs": {"mutations": {"nuc": ["C1093A", "G17278T", "G25429T", "C27998T"]}}}, {"name": "NODE_0001540", "node_attrs": {"div": 9, "num_date": {"value": 2020.3779914331562, "confidence": [2020.2981547995514, 2020.475663938326]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC426a/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5341530054645, "confidence": [2020.5341530054645, 2020.5341530054645]}, "tsne_x": {"value": -11.374384822568883}, "umap_x": {"value": -1.3139693}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.243394}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.2940448367548845}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.244296339801746}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.699959012037757}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gujarat"}, "mds2": {"value": 4.184791248094809}, "mds3": {"value": -8.482503010171847}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.5564544647020977}}, "branch_attrs": {"mutations": {"nuc": ["G376A", "T15254C", "C17145T", "C18657T", "C27689T"]}}}, {"name": "NODE_0001541", "node_attrs": {"div": 9, "num_date": {"value": 2020.514280265774, "confidence": [2020.3881323717633, 2020.6405005695547]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001331", "node_attrs": {"div": 12, "num_date": {"value": 2020.6680327868853, "confidence": [2020.625616912182, 2020.6680327868853]}}, "branch_attrs": {"mutations": {"nuc": ["T10093A", "A24742G", "C29167T"]}}, "children": [{"name": "IND/GBRC433/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.6680327868853, "confidence": [2020.6680327868853, 2020.6680327868853]}, "tsne_x": {"value": -11.480616545569292}, "umap_x": {"value": -2.0406592}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5815096}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.306169937623525}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.365676069960305}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.359869363945428}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gujarat"}, "mds2": {"value": 1.192860575283358}, "mds3": {"value": -7.265260659955768}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.5586474580394967}}, "branch_attrs": {"mutations": {}}}, {"name": "IND/GBRC432/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.6734972677596, "confidence": [2020.6734972677596, 2020.6734972677596]}, "tsne_x": {"value": -11.48355020671303}, "umap_x": {"value": -2.1871238}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.571419}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.306169937623525}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.367749940993628}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.856351857050712}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gujarat"}, "mds2": {"value": 1.978107503166044}, "mds3": {"value": -6.964888499713864}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.5586474580394967}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001549", "node_attrs": {"div": 9, "num_date": {"value": 2020.5635566315987, "confidence": [2020.4216607741048, 2020.6933524159313]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/920456050/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.782786885246, "confidence": [2020.782786885246, 2020.782786885246]}, "tsne_x": {"value": -11.540524353714336}, "umap_x": {"value": -2.3101375}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4724307}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.897559343327149}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.503107970135268}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.5492378172583594}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bahrain"}, "mds2": {"value": 0.6342304665280111}, "mds3": {"value": -6.850370392391874}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.676186101975768}}, "branch_attrs": {"mutations": {"nuc": ["C3045T", "C18252T", "A27965T"]}}}, {"name": "NODE_0001551", "node_attrs": {"div": 9, "num_date": {"value": 2020.5901263473531, "confidence": [2020.4307019747437, 2020.7020908192835]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/340859906_S10/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_x": {"value": -11.298270699284588}, "umap_x": {"value": -0.57139534}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.9588385}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.14229849761714}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.053693859880909}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.287178469093961}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bahrain"}, "mds2": {"value": -0.2222182166605107}, "mds3": {"value": -11.939911185076124}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.8535507336048873}}, "branch_attrs": {"mutations": {"nuc": ["C1101T", "T7226A", "C8982T", "C14074A", "G20348T", "C25427T", "C27476T"]}}}, {"name": "BHR/340862225_S35/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_x": {"value": -11.575426703096886}, "umap_x": {"value": -2.4913595}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5413337}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.148137866529629}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.53576523673118}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.2059164137590501}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bahrain"}, "mds2": {"value": 0.6108962820561542}, "mds3": {"value": -4.384535421788282}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 4.0166696647622695}}, "branch_attrs": {"mutations": {"nuc": ["G12988T", "C27874T", "G29751C"]}}}]}]}]}]}]}, {"name": "NODE_0001552", "node_attrs": {"div": 8, "num_date": {"value": 2020.3301776179164, "confidence": [2020.1829817192079, 2020.3958211438432]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001554", "node_attrs": {"div": 8, "num_date": {"value": 2020.3591091437065, "confidence": [2020.181279441741, 2020.3974591998574]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-0906/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4931693989072, "confidence": [2020.4931693989072, 2020.4931693989072]}, "tsne_x": {"value": -11.780989025128768}, "umap_x": {"value": -2.6722105}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4909563}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 13.203372772016998}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -14.091563148679992}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.429023425811034}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Florida"}, "mds2": {"value": 1.3014975491425425}, "mds3": {"value": -5.226760205381576}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.341874411088275}}, "branch_attrs": {"mutations": {"nuc": ["C21440T", "C26895T"]}}}, {"name": "NODE_0001555", "node_attrs": {"div": 8, "num_date": {"value": 2020.3626968245612, "confidence": [2020.1828123996813, 2020.4092224282429]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA979999", "node_attrs": {"div": 14, "num_date": {"value": 2020.5068306010928, "confidence": [2020.5068306010928, 2020.5068306010928]}, "tsne_x": {"value": -11.128814699521012}, "umap_x": {"value": -1.7528234}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2776985}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0369379982976215}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.51"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -13.866529431722002}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.1071091581061985}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.668803744258304}, "mds3": {"value": -8.302989045321748}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1388880298754047}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "G4180T", "T10453C", "C11195T", "G15380T", "C18508T"]}}}, {"name": "NODE_0001333", "node_attrs": {"div": 14, "num_date": {"value": 2020.4974664395434, "confidence": [2020.4429028301893, 2020.544480414847]}}, "branch_attrs": {"mutations": {"nuc": ["T4346C", "C9286T", "C10376T", "C14708T", "C28725T", "G29692T"]}}, "children": [{"name": "NODE_0001334", "node_attrs": {"div": 15, "num_date": {"value": 2020.5340296666968, "confidence": [2020.4891686719957, 2020.5478142076502]}}, "branch_attrs": {"mutations": {"nuc": ["T8076C"]}}, "children": [{"name": "JPN/HiroHC079c/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5478142076502, "confidence": [2020.5478142076502, 2020.5478142076502]}, "tsne_x": {"value": -11.732217110796311}, "umap_x": {"value": -0.18677986}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.76139}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.592523134580826}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.088238930843247}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.313860634683838}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Japan"}, "mds2": {"value": 3.6104559287391993}, "mds3": {"value": -10.37197672757389}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.145730846256251}}, "branch_attrs": {"mutations": {"nuc": ["T22738C"]}}}, {"name": "Japan/Donner121/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.766393442623, "confidence": [2020.766393442623, 2020.766393442623]}, "tsne_x": {"value": -11.729389561466844}, "umap_x": {"value": 0.36443663}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.334136}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.918239335720828}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.100895753799865}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.76296186367737}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -2.5693436259950806}, "mds3": {"value": -13.966572821042003}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1016289126293328}}, "branch_attrs": {"mutations": {"nuc": ["C2388T", "T7900C", "G15768A", "A27759-", "T27760-", "T27761-"]}}}]}, {"name": "NODE_0001335", "node_attrs": {"div": 15, "num_date": {"value": 2020.5628095485908, "confidence": [2020.4915958415168, 2020.6599878611046]}}, "branch_attrs": {"mutations": {"nuc": ["T22020C"], "S": ["M153T"]}, "labels": {"aa": "S: M153T"}}, "children": [{"name": "Japan/Donner283/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_x": {"value": -11.727166238565964}, "umap_x": {"value": 0.64916545}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.060025}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.023519835779165}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.12476333481093}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.452168617212322}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -6.211226181089111}, "mds3": {"value": -16.473929732069312}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1117630194551187}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "C7119T", "G11335T", "C13423T", "C29635T"]}}}, {"name": "NODE_0001559", "node_attrs": {"div": 15, "num_date": {"value": 2020.607382378534, "confidence": [2020.488976788873, 2020.6926689553434]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner295/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8647540983607, "confidence": [2020.8647540983607, 2020.8647540983607]}, "tsne_x": {"value": -11.728280469218252}, "umap_x": {"value": 0.22254558}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.4716535}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.008496609867619}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.11374287008737}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.51079216192892}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": 8.637658003156089}, "mds3": {"value": -10.407029529350815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1165779397967524}}, "branch_attrs": {"mutations": {"nuc": ["G12070T", "A27633G", "G28703C"]}}}, {"name": "NODE_0001560", "node_attrs": {"div": 15, "num_date": {"value": 2020.6470647902038, "confidence": [2020.4894355868485, 2020.6911760907183]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LC655340", "node_attrs": {"div": 19, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_x": {"value": -11.72875726825354}, "umap_x": {"value": 0.16150127}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.512652}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.7121952112927135}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.11384054308155}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.89562251552395}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanagawa"}, "mds2": {"value": 9.912443489540587}, "mds3": {"value": -10.318519053456528}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.613628526606163}}, "branch_attrs": {"mutations": {"nuc": ["C44T", "T7822A", "C28093T", "G29703T"]}}}, {"name": "LC655337", "node_attrs": {"div": 17, "num_date": {"value": 2020.7062841530055, "confidence": [2020.7062841530055, 2020.7062841530055]}, "tsne_x": {"value": -11.730619751835745}, "umap_x": {"value": -0.027081423}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6065974}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.714777024848844}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -19.105657766710145}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.869157384080501}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanagawa"}, "mds2": {"value": -0.7278886380268568}, "mds3": {"value": -13.393305743634247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.702028771173264}}, "branch_attrs": {"mutations": {"nuc": ["C1342T", "C18176T"]}}}]}]}]}]}]}]}, {"name": "NODE_0001338", "node_attrs": {"div": 11, "num_date": {"value": 2020.4811933589385, "confidence": [2020.351825436711, 2020.5132238792357]}}, "branch_attrs": {"mutations": {"nuc": ["C18167T", "G21518T", "G28975T"]}}, "children": [{"name": "NODE_0001562", "node_attrs": {"div": 11, "num_date": {"value": 2020.504029284723, "confidence": [2020.356093550599, 2020.6991051215755]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner327/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.9521857923498, "confidence": [2020.9521857923498, 2020.9521857923498]}, "tsne_x": {"value": -11.448872960793238}, "umap_x": {"value": 0.76229817}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.923393}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.032823398396422}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.751316721258071}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 14.952434496110392}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kansai"}, "mds2": {"value": 11.639050514952208}, "mds3": {"value": -10.655901688634804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1302103912532582}}, "branch_attrs": {"mutations": {"nuc": ["C355T", "G1738A", "T6235C", "A6592G", "T25673C", "C27476T", "C28453T", "G28541A", "G29427T", "C29520T"]}}}, {"name": "NODE_0001340", "node_attrs": {"div": 12, "num_date": {"value": 2020.5886313305584, "confidence": [2020.4146674943752, 2020.8017473485556]}}, "branch_attrs": {"mutations": {"nuc": ["C6433T"]}}, "children": [{"name": "Japan/Donner301/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_x": {"value": -11.206662026203828}, "umap_x": {"value": 0.38119918}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.313723}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.578891807277799}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -12.138573293882956}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.846337441418722}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -10.923549536630686}, "mds3": {"value": -12.259202227868029}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 1.1237068520147937}}, "branch_attrs": {"mutations": {"nuc": ["A2368G", "C7639T", "T9867C", "T15597C", "T18897C", "G21724T", "C21736T", "C23604T", "T29021A"], "S": ["L54F", "P681L"]}, "labels": {"aa": "S: L54F, P681L"}}}, {"name": "NODE_0001341", "node_attrs": {"div": 14, "num_date": {"value": 2020.7167005890753, "confidence": [2020.5635032484015, 2020.8781263742437]}}, "branch_attrs": {"mutations": {"nuc": ["G8371T", "C15240T"]}}, "children": [{"name": "NODE_0001342", "node_attrs": {"div": 15, "num_date": {"value": 2020.816389538418, "confidence": [2020.6229096362304, 2020.9106682712022]}}, "branch_attrs": {"mutations": {"nuc": ["C9207T"]}}, "children": [{"name": "Japan/Donner321/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.9439890710382, "confidence": [2020.9439890710382, 2020.9439890710382]}, "tsne_x": {"value": -10.375786763620486}, "umap_x": {"value": 0.02024982}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.561564}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.032947950466569}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.806447893570372}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.183868131138747}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kansai"}, "mds2": {"value": -6.8644264413868425}, "mds3": {"value": -11.948830433139303}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1200975929949925}}, "branch_attrs": {"mutations": {"nuc": ["G26620T", "C28099T"]}}}, {"name": "Japan/Donner268/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_x": {"value": -10.326099451694462}, "umap_x": {"value": 0.37014425}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.340284}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.033610193367679}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.82804085516707}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.665023424812553}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -9.519340231796033}, "mds3": {"value": -13.403217292104426}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1228246023013302}}, "branch_attrs": {"mutations": {"nuc": ["A4233G", "C9447T", "C19938T", "A23720G"], "S": ["I720V"]}, "labels": {"aa": "S: I720V"}}}]}, {"name": "NODE_0001343", "node_attrs": {"div": 15, "num_date": {"value": 2020.7850430438032, "confidence": [2020.6370133336954, 2020.9024379248067]}}, "branch_attrs": {"mutations": {"nuc": ["G21305A"]}}, "children": [{"name": "Japan/Donner373/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_x": {"value": -10.342394712308948}, "umap_x": {"value": 0.2952486}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.4428186}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.048828933282797}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.816631268212662}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.679188638852611}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -7.636588146847313}, "mds3": {"value": -12.954931985230884}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.128768004976454}}, "branch_attrs": {"mutations": {"nuc": ["C11776T", "C22564T", "T24763C"]}}}, {"name": "Japan/Donner156/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_x": {"value": -10.283821464383482}, "umap_x": {"value": 0.4145809}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.2193127}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.049579537965634}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.824813471883733}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.649778222644994}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -10.857108550016772}, "mds3": {"value": -14.09770096826909}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1034190048751487}}, "branch_attrs": {"mutations": {"nuc": ["G2398A", "C2623T", "C6723T", "G28089T", "C28603T"]}}}]}]}]}]}, {"name": "NODE_0001344", "node_attrs": {"div": 12, "num_date": {"value": 2020.514779230402, "confidence": [2020.4516497348022, 2020.5232240437158]}}, "branch_attrs": {"mutations": {"nuc": ["C8917T"]}}, "children": [{"name": "JPN/HiroHC067c/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5232240437158, "confidence": [2020.5232240437158, 2020.5232240437158]}, "tsne_x": {"value": -10.985607152927056}, "umap_x": {"value": -2.3329246}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.491062}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.664223880770511}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.471275502460502}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.943229663851869}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Japan"}, "mds2": {"value": 0.3469628671592702}, "mds3": {"value": -6.964401351394051}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.40759418574883}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001568", "node_attrs": {"div": 12, "num_date": {"value": 2020.587503640669, "confidence": [2020.4443109178246, 2020.7118386523664]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner209/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_x": {"value": -10.984044047972176}, "umap_x": {"value": -0.5326588}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.021287}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.005226748707243}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.370743787744162}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 8.485324821807074}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -0.7345246201040817}, "mds3": {"value": -10.143191863819496}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1180488278237771}}, "branch_attrs": {"mutations": {"nuc": ["G2436A", "G21796T", "G25500T"], "S": ["R78S"]}, "labels": {"aa": "S: R78S"}}}, {"name": "NODE_0001569", "node_attrs": {"div": 12, "num_date": {"value": 2020.664973847688, "confidence": [2020.4426929260962, 2020.7864936203373]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner470/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.8319672131147, "confidence": [2020.8319672131147, 2020.8319672131147]}, "tsne_x": {"value": -10.976605291394064}, "umap_x": {"value": -1.095953}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.236833}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.985504978433291}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.39471136258057}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.088381217594296}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Hokkaido"}, "mds2": {"value": -0.1903462899203785}, "mds3": {"value": -9.197144144681388}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1247044237305227}}, "branch_attrs": {"mutations": {"nuc": ["C25571T", "A27675C"]}}}, {"name": "Japan/Donner253/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_x": {"value": -11.078667466571114}, "umap_x": {"value": 0.37988514}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.3555775}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.036739016558314}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.427784536904468}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.693534117878436}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -2.2899080234346947}, "mds3": {"value": -13.347288886219731}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1275732068775757}}, "branch_attrs": {"mutations": {"nuc": ["G4255A", "G8602T", "C15540T", "G19072T", "C20844T", "G25565T"]}}}]}]}, {"name": "NODE_0001348", "node_attrs": {"div": 13, "num_date": {"value": 2020.5291125825515, "confidence": [2020.4760652958662, 2020.5599104772868]}}, "branch_attrs": {"mutations": {"nuc": ["C29679T"]}}, "children": [{"name": "Japan/Donner262/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_x": {"value": -11.01191374473242}, "umap_x": {"value": 0.41171438}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.455407}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.035331319804863}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -11.16669893898364}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.326220403336079}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -5.217346840470395}, "mds3": {"value": -15.557603266347126}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1217817336945927}}, "branch_attrs": {"mutations": {"nuc": ["G5036A", "C7321T", "C10156T", "C11379T", "G16288T", "C20946T"]}}}, {"name": "NODE_0001349", "node_attrs": {"div": 14, "num_date": {"value": 2020.550205109261, "confidence": [2020.5040561311623, 2020.57622952992]}}, "branch_attrs": {"mutations": {"nuc": ["C12049T"]}}, "children": [{"name": "NODE_0001350", "node_attrs": {"div": 17, "num_date": {"value": 2020.7588103022722, "confidence": [2020.6271960695199, 2020.8323083442185]}}, "branch_attrs": {"mutations": {"nuc": ["C5365T", "G20560T", "C20703T"]}}, "children": [{"name": "Japan/Donner282/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.8948087431695, "confidence": [2020.8948087431695, 2020.8948087431695]}, "tsne_x": {"value": -10.875297364966409}, "umap_x": {"value": 1.1655467}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.4854386}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.4640783567763371}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.741010748658448}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 18.171437280505053}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": 12.429792898318606}, "mds3": {"value": -9.945025735646308}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.286604571048714}}, "branch_attrs": {"mutations": {"nuc": ["C222T", "G2436T", "C6525T", "A14185C", "C25665T"]}}}, {"name": "LC655346", "node_attrs": {"div": 19, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_x": {"value": -10.878335891606406}, "umap_x": {"value": 0.4505013}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.2682624}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.709420919083419}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.778225361260096}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.591227752081531}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanagawa"}, "mds2": {"value": -4.384377024407584}, "mds3": {"value": -14.85207471645964}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.703468822663153}}, "branch_attrs": {"mutations": {"nuc": ["C18431T", "C23638T"]}}}]}, {"name": "NODE_0001351", "node_attrs": {"div": 18, "num_date": {"value": 2020.5997267759562, "confidence": [2020.5831969839003, 2020.5997267759562]}}, "branch_attrs": {"mutations": {"nuc": ["C6380T", "C17502T", "G23587T", "C29353T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}, "children": [{"name": "Japan/Donner276/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.5997267759562, "confidence": [2020.5997267759562, 2020.5997267759562]}, "tsne_x": {"value": -10.821442219769835}, "umap_x": {"value": 0.29487056}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.45215}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0362084074400375}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.655871289613764}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 10.75187626028158}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": -1.9191610102612853}, "mds3": {"value": -13.716719057162956}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1253894722484608}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001574", "node_attrs": {"div": 18, "num_date": {"value": 2020.7581714709297, "confidence": [2020.6609735225845, 2020.8161401046946]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "JPN/HiroHC185c/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -10.811828227616097}, "umap_x": {"value": 0.41230175}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.325717}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.792588630174277}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.62130623252708}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.324037956852914}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Japan"}, "mds2": {"value": -3.268070581832766}, "mds3": {"value": -15.277498146269869}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.41504744488942}}, "branch_attrs": {"mutations": {"nuc": ["C29708T"]}}}, {"name": "NODE_0001576", "node_attrs": {"div": 18, "num_date": {"value": 2020.8148358858934, "confidence": [2020.7480149137155, 2020.8210382513662]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner468/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_x": {"value": -10.820728426601272}, "umap_x": {"value": 0.23716062}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.5587506}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0362084074400375}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.655142625878057}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 7.492925639876831}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Hokkaido"}, "mds2": {"value": -2.40311955981009}, "mds3": {"value": -14.36582364032314}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1253894722484608}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001577", "node_attrs": {"div": 18, "num_date": {"value": 2020.8201916727683, "confidence": [2020.7793014964225, 2020.8583052623246]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner296/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.872950819672, "confidence": [2020.872950819672, 2020.872950819672]}, "tsne_x": {"value": -10.80437229461229}, "umap_x": {"value": 0.52938277}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.188343}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.035670804153194}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.595555860737754}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 12.833021031089134}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kanto"}, "mds2": {"value": 2.535096324166961}, "mds3": {"value": -14.924351015263346}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1230606251520974}}, "branch_attrs": {"mutations": {"nuc": ["C12781T", "G25996T"]}}}, {"name": "NODE_0001579", "node_attrs": {"div": 18, "num_date": {"value": 2020.941256830601, "confidence": [2020.8563091708818, 2020.941256830601]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y21035/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.286301369863, "confidence": [2021.286301369863, 2021.286301369863]}, "tsne_x": {"value": -10.797826074357564}, "umap_x": {"value": 0.8210063}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.8614974}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.708733242783918}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.57563638016702}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.279700391752764}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Shizuoka"}, "mds2": {"value": -5.410885515742706}, "mds3": {"value": -17.11937125415852}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.153869482735328}}, "branch_attrs": {"mutations": {"nuc": ["C2445T", "C11884T", "A13308G"]}}}, {"name": "JPN/JP_Hiro85144c/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_x": {"value": -10.820494834417635}, "umap_x": {"value": 0.24584661}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6473145}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.0362084074400375}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "tsne_y": {"value": -10.654975051946916}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.755887062309704}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Japan"}, "mds2": {"value": -2.9645176552761705}, "mds3": {"value": -14.441924608373611}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1253894722484608}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001581", "node_attrs": {"div": 7, "num_date": {"value": 2020.2247425958014, "confidence": [2020.1656630524355, 2020.3386759958976]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001045", "node_attrs": {"div": 8, "num_date": {"value": 2020.285662331563, "confidence": [2020.1798766217119, 2020.3401639344263]}}, "branch_attrs": {"mutations": {"nuc": ["G10265A"]}}, "children": [{"name": "PER/covper032/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_x": {"value": -11.653537419338583}, "umap_x": {"value": -2.7218668}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4581103}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.885346992082248}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.032614156636331}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.0712088994239775}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 1.663751303487575}, "mds3": {"value": -4.70123844222195}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.7773418313812}}, "branch_attrs": {"mutations": {"nuc": ["G17749T", "G22487C", "C29675-"], "S": ["E309Q"]}, "labels": {"aa": "S: E309Q"}}}, {"name": "NODE_0001583", "node_attrs": {"div": 8, "num_date": {"value": 2020.3221035118281, "confidence": [2020.1741011510462, 2020.3918083261876]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA976818", "node_attrs": {"div": 11, "num_date": {"value": 2020.4467213114754, "confidence": [2020.4467213114754, 2020.4467213114754]}, "tsne_x": {"value": -11.39553439628344}, "umap_x": {"value": -2.917726}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4460807}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.993216661330334}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.301"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.13381432462874}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.7269721190061792}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.4239481090994446}, "mds3": {"value": -5.450871726431629}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.124012976981869}}, "branch_attrs": {"mutations": {"nuc": ["A9433T", "C19374T", "A19650G"]}}}, {"name": "NODE_0001584", "node_attrs": {"div": 8, "num_date": {"value": 2020.3314256889073, "confidence": [2020.1810980647115, 2020.4022440898568]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA978627", "node_attrs": {"div": 16, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_x": {"value": -10.63598891221062}, "umap_x": {"value": -0.65500283}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.00613}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.089003491034541}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.70"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.19969045082307}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.860435538912095}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.3259716036513198}, "mds3": {"value": -10.273751044529885}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.0205412254092122}}, "branch_attrs": {"mutations": {"nuc": ["C6267T", "T9961C", "A15972G", "C16178T", "G19648T", "C19718T", "A25492G", "T28759C"]}}}, {"name": "NODE_0001585", "node_attrs": {"div": 8, "num_date": {"value": 2020.3630561939374, "confidence": [2020.1809404942767, 2020.4086376892951]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001050", "node_attrs": {"div": 14, "num_date": {"value": 2020.4982997117852, "confidence": [2020.3966468771855, 2020.541660946566]}}, "branch_attrs": {"mutations": {"nuc": ["C3096T", "T21861C", "T23084C", "C26537T", "T27940C", "C29272T"], "S": ["I100T", "Y508H"]}, "labels": {"aa": "S: I100T, Y508H"}}, "children": [{"name": "KEN/K93373/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8565573770493, "confidence": [2020.8565573770493, 2020.8565573770493]}, "tsne_x": {"value": -11.001162588211562}, "umap_x": {"value": -0.71651334}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.024434}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 13.662449593860064}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -17.434235617384594}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.7415067684857275}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kenya"}, "mds2": {"value": 7.8883057093636895}, "mds3": {"value": -5.995521349071353}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.947069559310541}}, "branch_attrs": {"mutations": {"nuc": ["C6285T", "G17790T", "C21365T"]}}}, {"name": "KEN/KEM-20-07-52200/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.5696721311476, "confidence": [2020.5696721311476, 2020.5696721311476]}, "tsne_x": {"value": -10.975073380032724}, "umap_x": {"value": 0.18522838}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.7855453}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.7092157707668}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -17.487539172102153}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.7899989853307074}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Kenya"}, "mds2": {"value": -7.072354283313214}, "mds3": {"value": -10.705294019771747}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 14.34589146761932}}, "branch_attrs": {"mutations": {"nuc": ["A143C", "T3322C", "C8266T", "C16323T", "G21724C"], "S": ["L54F"]}, "labels": {"aa": "S: L54F"}}}]}, {"name": "NODE_0001587", "node_attrs": {"div": 8, "num_date": {"value": 2020.380819475803, "confidence": [2020.1821689814335, 2020.446449900055]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA980181", "node_attrs": {"div": 11, "num_date": {"value": 2020.4986338797814, "confidence": [2020.4986338797814, 2020.4986338797814]}, "tsne_x": {"value": -11.364836382552877}, "umap_x": {"value": -2.8867972}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.460559}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.984104003680571}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.043370280116012}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.011411000779665}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": 1.0776086699939198}, "mds3": {"value": -5.65342356998305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.2717294435731296}}, "branch_attrs": {"mutations": {"nuc": ["T2353C", "T13794G", "A17184G"]}}}, {"name": "PER/un-CDC-3958248-001/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.6325136612022, "confidence": [2020.6325136612022, 2020.6325136612022]}, "tsne_x": {"value": -11.2126821504144}, "umap_x": {"value": -2.000859}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.564519}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.540543043572497}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.214287500107597}, "country": {"value": "Peru"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.292344160699545}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Peru"}, "mds2": {"value": 3.67798939750672}, "mds3": {"value": -5.548359567383911}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 17.704212111219803}}, "branch_attrs": {"mutations": {"nuc": ["C9180T", "C16887T", "C18129T", "C27603T"]}}}]}]}]}]}]}, {"name": "NODE_0001588", "node_attrs": {"div": 7, "num_date": {"value": 2020.258146025241, "confidence": [2020.1624039894689, 2020.3744000542767]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001063", "node_attrs": {"div": 8, "num_date": {"value": 2020.3590613228757, "confidence": [2020.2586414271234, 2020.6513699627221]}}, "branch_attrs": {"mutations": {"nuc": ["G9802T"]}}, "children": [{"name": "NODE_0001590", "node_attrs": {"div": 8, "num_date": {"value": 2020.4188420304283, "confidence": [2020.2515826870276, 2020.6478810842652]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OA993248", "node_attrs": {"div": 18, "num_date": {"value": 2020.7390710382513, "confidence": [2020.7390710382513, 2020.7390710382513]}, "tsne_x": {"value": -11.830110753444083}, "umap_x": {"value": 0.07160163}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.7278137}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.009875435025935}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.307"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.56899920181992}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.4005362141288735}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "England"}, "mds2": {"value": -2.407632602964293}, "mds3": {"value": -12.377566012047582}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.195670638670151}}, "branch_attrs": {"mutations": {"nuc": ["G1210T", "G12067T", "C13667T", "G15957T", "C19017T", "G22026T", "G25793T", "A27865T", "T27866A", "T29785A"], "S": ["S155I"]}, "labels": {"aa": "S: S155I"}}}, {"name": "NZL/20CV0510/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_x": {"value": -13.51171923469519}, "umap_x": {"value": -0.7409331}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.0819607}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.034725468701904}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.6351239993807}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.400377278015092}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Auckland"}, "mds2": {"value": 1.7776800095682928}, "mds3": {"value": -10.86055401560583}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1206272584539458}}, "branch_attrs": {"mutations": {"nuc": ["C367T", "C2892T", "C3096T", "C19018T", "C27945T", "C28093T", "C29323T"]}}}]}, {"name": "NODE_0001065", "node_attrs": {"div": 13, "num_date": {"value": 2020.670098538149, "confidence": [2020.4897588351105, 2020.849154838596]}}, "branch_attrs": {"mutations": {"nuc": ["A3790T", "G25062C", "C25521T", "G25913A", "C29370T"], "S": ["G1167A"]}, "labels": {"aa": "S: G1167A"}}, "children": [{"name": "Colombia/UW20122006124/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9685792349726, "confidence": [2020.9685792349726, 2020.9685792349726]}, "tsne_x": {"value": -14.286080489134084}, "umap_x": {"value": 0.11815537}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.539324}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.06966671309275}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.348"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.67455825423729}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.119763579583646}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Colombia"}, "mds2": {"value": -10.220076574151872}, "mds3": {"value": -10.731081302014124}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 28.074586533374685}}, "branch_attrs": {"mutations": {"nuc": ["C7528T", "C8299T", "C16293T", "C21642T", "C23854T"], "S": ["A27V"]}, "labels": {"aa": "S: A27V"}}}, {"name": "Colombia/CO-DC-UW21012573629/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0671232876712, "confidence": [2021.0671232876712, 2021.0671232876712]}, "tsne_x": {"value": -14.46407566197658}, "umap_x": {"value": 1.370929}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.2315254}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.028669239830194}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.348"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -15.73698663402068}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 11.67667381102016}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Colombia"}, "mds2": {"value": -18.70543243754904}, "mds3": {"value": -12.39806368738305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 28.0779547207375}}, "branch_attrs": {"mutations": {"nuc": ["G6362A", "G8872T", "G11417T", "C12473T", "T15642C", "C17550T", "C18166T", "T23371C", "C27219T", "G27602T", "C28278A", "G29135A"]}}}]}]}, {"name": "NODE_0001104", "node_attrs": {"div": 8, "num_date": {"value": 2020.3192602209763, "confidence": [2020.1741297673227, 2020.3885068824147]}}, "branch_attrs": {"mutations": {"nuc": ["A1163T"]}}, "children": [{"name": "NODE_0001593", "node_attrs": {"div": 8, "num_date": {"value": 2020.3293891261953, "confidence": [2020.1783431321003, 2020.3944499040117]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_NILMRC_213/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4521857923498, "confidence": [2020.4521857923498, 2020.4521857923498]}, "tsne_x": {"value": -14.047095663052865}, "umap_x": {"value": -1.0234296}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2470493}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.978735251717561}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.181678840628717}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.322301955545975}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 0.111025047418669}, "mds3": {"value": -9.50963528085641}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.951171340104462}}, "branch_attrs": {"mutations": {"nuc": ["G3880-", "A3881-", "T3882-", "T3883-", "C3884-", "C3885-", "T3886-", "A3887-", "A3888-", "A3889-", "G3890-", "A3891-", "G3892-", "G3893-", "A3894-", "A3895-", "G3896-", "T3897-", "T3898-", "A3899-", "A3900-", "G3901-", "C3902-", "C3903-", "A3904-", "T3905-", "T3906-", "C11514T", "C15180T", "G18994T", "T20424C", "G28080A", "G29734T"]}}}, {"name": "NODE_0001594", "node_attrs": {"div": 8, "num_date": {"value": 2020.3591618106548, "confidence": [2020.1807480914376, 2020.400831460599]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_NILMRC_203/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_x": {"value": -13.165647773559796}, "umap_x": {"value": -2.4200861}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5565495}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.965367711335704}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.13815533389086}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.817082529402292}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangladesh"}, "mds2": {"value": 0.3570097575264117}, "mds3": {"value": -6.186046748159746}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.95604870844469}}, "branch_attrs": {"mutations": {"nuc": ["T20246C", "G20489T", "A23541T"], "S": ["Y660F"]}, "labels": {"aa": "S: Y660F"}}}, {"name": "AUS/VIC2124/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4631147540983, "confidence": [2020.4631147540983, 2020.4631147540983]}, "tsne_x": {"value": -13.4124477581254}, "umap_x": {"value": -1.7863083}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.525994}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.666180145284122}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.058620058594068}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 5.330368166107011}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Victoria"}, "mds2": {"value": -0.1890460195843944}, "mds3": {"value": -7.368017044831312}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.169701652266965}}, "branch_attrs": {"mutations": {"nuc": ["G23593T", "C24370T", "G27358T", "A28483C"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}]}]}, {"name": "NODE_0001596", "node_attrs": {"div": 8, "num_date": {"value": 2020.3282048465467, "confidence": [2020.1821977324707, 2020.3951348618032]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001598", "node_attrs": {"div": 8, "num_date": {"value": 2020.3635247305801, "confidence": [2020.2638618790904, 2020.6363348513003]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BSMMU-2/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8592896174864, "confidence": [2020.8592896174864, 2020.8592896174864]}, "tsne_x": {"value": -14.852644838259357}, "umap_x": {"value": -0.02304777}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6732726}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.669628120058662}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.07254267253554}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.249058121256429}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangladesh"}, "mds2": {"value": -4.1599448937015255}, "mds3": {"value": -11.641009111152172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -12.598491101852254}}, "branch_attrs": {"mutations": {"nuc": ["C2094T", "C10594T", "C14925T", "G20238T", "C23664T", "C25587T", "C25904T", "G26211T", "G27327T"], "S": ["A701V"]}, "labels": {"aa": "S: A701V"}}}, {"name": "NODE_0001599", "node_attrs": {"div": 8, "num_date": {"value": 2020.4238181973803, "confidence": [2020.2591810336949, 2020.6388626519195]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC15399/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7418032786886, "confidence": [2020.7418032786886, 2020.7418032786886]}, "tsne_x": {"value": -13.674730798714895}, "umap_x": {"value": -1.5835335}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.4851184}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.585068033113419}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.208026255075165}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.145706197903135}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Victoria"}, "mds2": {"value": 0.37077946210323}, "mds3": {"value": -8.295067039514457}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.470077649059181}}, "branch_attrs": {"mutations": {"nuc": ["C506T", "C7600T", "G7798T", "T23548C", "T29233C"]}}}, {"name": "BGD/NGRI-R2-O25/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6926229508197, "confidence": [2020.6926229508197, 2020.6926229508197]}, "tsne_x": {"value": -14.680384671799892}, "umap_x": {"value": -1.0072957}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.2052703}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.79637179422752}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.361836077957031}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.6082680865899943}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Bangladesh"}, "mds2": {"value": -0.3576105008326576}, "mds3": {"value": -10.041646263572195}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -18.72274235434428}}, "branch_attrs": {"mutations": {"nuc": ["A2085G", "T2593C", "C10448T", "T13669C", "G18826A", "T19449A", "C22480T"]}}}]}]}, {"name": "NODE_0001601", "node_attrs": {"div": 8, "num_date": {"value": 2020.3382393716588, "confidence": [2020.1837000002938, 2020.3989373997551]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_NILMRC_102/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4330601092897, "confidence": [2020.4330601092897, 2020.4330601092897]}, "tsne_x": {"value": -13.151750378954764}, "umap_x": {"value": -2.3241081}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.5711308}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.971082523948284}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "12"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "tsne_y": {"value": -15.118470015715122}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.227595975444987}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Rangpur"}, "mds2": {"value": 0.0874030887061614}, "mds3": {"value": -6.490287830039519}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.958270273439688}}, "branch_attrs": {"mutations": {"nuc": ["G7243A", "T17009C", "G23282T"], "S": ["D574Y"]}, "labels": {"aa": "S: D574Y"}}}, {"name": "NODE_0001111", "node_attrs": {"div": 14, "num_date": {"value": 2020.440612055668, "confidence": [2020.4020632019267, 2020.4613113109365]}}, "branch_attrs": {"mutations": {"nuc": ["T7540C", "G16647T", "C18555T", "G22992A", "G23401A"], "S": ["S477N"]}, "labels": {"aa": "S: S477N"}}, "children": [{"name": "AUS/VIC2276/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.49043715847, "confidence": [2020.49043715847, 2020.49043715847]}, "tsne_x": {"value": -18.49488963563805}, "umap_x": {"value": -1.033321}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.801023}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.729502350219663}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.69778356417765}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.85771000257354}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.3060343789409234}, "mds3": {"value": -9.80440145584542}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.289456163247834}}, "branch_attrs": {"mutations": {"nuc": ["C16247T", "C18267T"]}}}, {"name": "AUS/VIC2356/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4849726775956, "confidence": [2020.4849726775956, 2020.4849726775956]}, "tsne_x": {"value": -18.45048980735636}, "umap_x": {"value": -1.069503}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7965817}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.093203440599512}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.68112072225136}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.0951966864340457}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.9586437332376807}, "mds3": {"value": -8.53487969454238}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.0182358655789696}}, "branch_attrs": {"mutations": {"nuc": ["T27785C"]}}}, {"name": "AUS/VIC2316/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_x": {"value": -18.44865212921672}, "umap_x": {"value": -1.1338694}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.786739}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.925115220096668}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.67164202294052}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.910570406332376}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.0974981250707025}, "mds3": {"value": -8.516729005110173}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.508942722551624}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC2133/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4658469945355, "confidence": [2020.4658469945355, 2020.4658469945355]}, "tsne_x": {"value": -18.44081575259589}, "umap_x": {"value": -1.6125376}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.773044}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.651434058529102}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.675445675197455}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.565082854756716}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -2.6856828122340803}, "mds3": {"value": -7.918655465025797}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.88319453839968}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001145", "node_attrs": {"div": 15, "num_date": {"value": 2020.4959016393443, "confidence": [2020.455451769699, 2020.4959016393443]}}, "branch_attrs": {"mutations": {"nuc": ["C17850T"]}}, "children": [{"name": "AUS/VIC14766/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_x": {"value": -18.37155497463513}, "umap_x": {"value": -1.0355083}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.721581}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.612001308192642}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.100499648704677}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.5048738469244614}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -8.02210111039623}, "mds3": {"value": -10.174775291862984}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.960389183023984}}, "branch_attrs": {"mutations": {"nuc": ["C66T", "A10323G", "C11109T", "G25477T"]}}}, {"name": "AUS/VIC7202/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4959016393443, "confidence": [2020.4959016393443, 2020.4959016393443]}, "tsne_x": {"value": -18.4608849404012}, "umap_x": {"value": -1.2487656}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.8531194}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.599843589504969}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.660519825771622}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.420120205060885}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.432593032791528}, "mds3": {"value": -8.989226004095668}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.475480255609444}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001152", "node_attrs": {"div": 15, "num_date": {"value": 2020.4788862625494, "confidence": [2020.4492486866488, 2020.4795081967213]}}, "branch_attrs": {"mutations": {"nuc": ["C28961T"]}}, "children": [{"name": "AUS/VIC2444/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.4849726775956, "confidence": [2020.4849726775956, 2020.4849726775956]}, "tsne_x": {"value": -18.496034105614548}, "umap_x": {"value": -1.0234722}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.8043303}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.111234095449817}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.700927937598106}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.8777222405921687}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.5470979088033525}, "mds3": {"value": -10.02772913781896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.195786537935971}}, "branch_attrs": {"mutations": {"nuc": ["C28674T"]}}}, {"name": "AUS/VIC2301/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_x": {"value": -18.471359864656385}, "umap_x": {"value": -1.0432749}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.776425}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.059278946064451}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.673627043440277}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.068374933548436}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.682089425470151}, "mds3": {"value": -9.290794533989176}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -10.566046174048475}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC2337/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_x": {"value": -18.467822900647267}, "umap_x": {"value": -1.0554991}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7950697}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.651109780651249}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.688380117833546}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.709854855409621}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.8470744500713954}, "mds3": {"value": -9.294013801440803}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.882620184554963}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001122", "node_attrs": {"div": 15, "num_date": {"value": 2020.47131147541, "confidence": [2020.4491889165383, 2020.47131147541]}}, "branch_attrs": {"mutations": {"nuc": ["C22480T"]}}, "children": [{"name": "AUS/VIC2082/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.47131147541, "confidence": [2020.47131147541, 2020.47131147541]}, "tsne_x": {"value": -18.464161353203327}, "umap_x": {"value": -1.042298}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.74533}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.787639577267427}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.650830824023405}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.32601402960853}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.8274794153307146}, "mds3": {"value": -9.248999871672025}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.662375620161748}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001606", "node_attrs": {"div": 15, "num_date": {"value": 2020.50956284153, "confidence": [2020.469364777873, 2020.50956284153]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC5676/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.50956284153, "confidence": [2020.50956284153, 2020.50956284153]}, "tsne_x": {"value": -18.46293965136904}, "umap_x": {"value": -1.0584105}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.794864}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.539558397988689}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.651086705792707}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.2811559308411935}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.634187925277328}, "mds3": {"value": -9.247785710336569}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.946053600262153}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/GC-277/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.613387978142, "confidence": [2020.613387978142, 2020.613387978142]}, "tsne_x": {"value": -18.527579911679155}, "umap_x": {"value": -0.9119965}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.6979313}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.50148067865504}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.49112738264132}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.172876071867568}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Australia"}, "mds2": {"value": -5.879020755248949}, "mds3": {"value": -11.480670703910612}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.3384513566386858}}, "branch_attrs": {"mutations": {"nuc": ["G3114T", "C27059T"]}}}]}]}, {"name": "NODE_0001158", "node_attrs": {"div": 15, "num_date": {"value": 2020.4955769388655, "confidence": [2020.4300352226583, 2020.5799665011727]}}, "branch_attrs": {"mutations": {"nuc": ["A17337G"]}}, "children": [{"name": "AUS/VIC16243/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.6844262295083, "confidence": [2020.6844262295083, 2020.6844262295083]}, "tsne_x": {"value": -19.035013913778297}, "umap_x": {"value": 0.2190227}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -4.5553265}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.631023841427479}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.223860018355026}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.810147087144328}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -8.674763240981457}, "mds3": {"value": -13.832277109813946}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.879967582411651}}, "branch_attrs": {"mutations": {"nuc": ["G3164A", "C17339T", "C23655T", "A27237T", "G27676C"], "S": ["S698L"]}, "labels": {"aa": "S: S698L"}}}, {"name": "NODE_0001159", "node_attrs": {"div": 17, "num_date": {"value": 2020.6073504958158, "confidence": [2020.5426767475656, 2020.6657595698955]}}, "branch_attrs": {"mutations": {"nuc": ["A4T", "C920T", "C12763T"]}}, "children": [{"name": "AUS/VIC16289/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.681693989071, "confidence": [2020.681693989071, 2020.681693989071]}, "tsne_x": {"value": -19.06004162905795}, "umap_x": {"value": 0.17508218}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -4.558845}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.9921324144874015}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.27169616771364}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.2367317242351735}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -8.083532712567331}, "mds3": {"value": -13.523567034680172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.607494589994367}}, "branch_attrs": {"mutations": {"nuc": ["C18486T", "C21207T", "C22792T"]}}}, {"name": "NODE_0001609", "node_attrs": {"div": 17, "num_date": {"value": 2020.6680327868853, "confidence": [2020.6203221779474, 2020.6680327868853]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC10705/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6680327868853, "confidence": [2020.6680327868853, 2020.6680327868853]}, "tsne_x": {"value": -18.759711932641345}, "umap_x": {"value": -0.63016236}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.4011106}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.650375237740978}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.48920191981265}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.582795090040922}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -5.81689652344182}, "mds3": {"value": -11.245434647248844}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.882505383131401}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC12977/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_x": {"value": -18.759533005687995}, "umap_x": {"value": -0.5416213}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.3712206}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.770571522592103}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.489050356864535}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.5858074364565145}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -5.804618006003932}, "mds3": {"value": -11.24052337844432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.515023771531342}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001129", "node_attrs": {"div": 15, "num_date": {"value": 2020.501417389283, "confidence": [2020.4270411970033, 2020.581648119896]}}, "branch_attrs": {"mutations": {"nuc": ["C5144T"]}}, "children": [{"name": "NODE_0001130", "node_attrs": {"div": 19, "num_date": {"value": 2020.6484240443276, "confidence": [2020.5969610542577, 2020.6704121073954]}}, "branch_attrs": {"mutations": {"nuc": ["G7328T", "A16172G", "T21369C", "T28009C"]}}, "children": [{"name": "AUS/VIC14981/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.6707650273224, "confidence": [2020.6707650273224, 2020.6707650273224]}, "tsne_x": {"value": -19.083900808233736}, "umap_x": {"value": 0.26766014}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -4.4800916}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.5149359315781037}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -18.158721101261914}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.201451557152811}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -9.147775078143807}, "mds3": {"value": -13.883471210070889}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.630089670594846}}, "branch_attrs": {"mutations": {"nuc": ["G24348T"], "S": ["S929I"]}, "labels": {"aa": "S: S929I"}}}, {"name": "AUS/VIC15880/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.76912568306, "confidence": [2020.76912568306, 2020.76912568306]}, "tsne_x": {"value": -19.149126296681587}, "umap_x": {"value": 0.44079712}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -4.290616}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.770816819037284}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -18.21740648378226}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 6.293575214607062}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -10.09371967539558}, "mds3": {"value": -14.703644295628273}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.517550588462853}}, "branch_attrs": {"mutations": {"nuc": ["G24959T", "G26834T"], "S": ["V1133F"]}, "labels": {"aa": "S: V1133F"}}}]}, {"name": "NODE_0001131", "node_attrs": {"div": 18, "num_date": {"value": 2020.7031368537716, "confidence": [2020.6536748713945, 2020.750370555358]}}, "branch_attrs": {"mutations": {"nuc": ["C15540T", "T21925C", "A26759T"]}}, "children": [{"name": "AUS/VIC15685/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7554644808743, "confidence": [2020.7554644808743, 2020.7554644808743]}, "tsne_x": {"value": -18.783994579077955}, "umap_x": {"value": 0.027105765}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -4.7137227}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.65180215591518}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -18.21659898091185}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.463930701288488}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -7.437365633920543}, "mds3": {"value": -12.427586955486564}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.882709309713273}}, "branch_attrs": {"mutations": {"nuc": ["A7522G"]}}}, {"name": "NODE_0001613", "node_attrs": {"div": 18, "num_date": {"value": 2020.7527322404371, "confidence": [2020.7093161432003, 2020.7527322404371]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC16224/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7527322404371, "confidence": [2020.7527322404371, 2020.7527322404371]}, "tsne_x": {"value": -18.722528442953934}, "umap_x": {"value": -1.11063}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7077146}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.8425645212565922}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -18.12283294900388}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.5403272431633038}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -6.57120976437997}, "mds3": {"value": -9.48184100283638}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 2.035103754472488}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC15692/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7527322404371, "confidence": [2020.7527322404371, 2020.7527322404371]}, "tsne_x": {"value": -18.720982362871005}, "umap_x": {"value": -1.1715511}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7110806}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.5619900795999435}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -18.121506352670888}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.5103318870980309}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -6.611334050089091}, "mds3": {"value": -9.265279684996578}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 3.866223537069844}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001616", "node_attrs": {"div": 14, "num_date": {"value": 2020.4512815417243, "confidence": [2020.4170626242105, 2020.49043715847]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC2636/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.49043715847, "confidence": [2020.49043715847, 2020.49043715847]}, "tsne_x": {"value": -18.44598221586424}, "umap_x": {"value": -1.1789128}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.804509}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.6265673977662685}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.67021801983497}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.19792570552191}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.0132973150911946}, "mds3": {"value": -8.42564888961546}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.636002684227855}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001617", "node_attrs": {"div": 14, "num_date": {"value": 2020.467104863883, "confidence": [2020.4422038088057, 2020.500003489219]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001618", "node_attrs": {"div": 14, "num_date": {"value": 2020.5047376953569, "confidence": [2020.4516780349745, 2020.5150273224044]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC3305/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5150273224044, "confidence": [2020.5150273224044, 2020.5150273224044]}, "tsne_x": {"value": -18.440850516805405}, "umap_x": {"value": -1.6219537}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7372794}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.374773068685681}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.675063595673155}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.899356274353177}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -2.768472164509369}, "mds3": {"value": -7.971805737923934}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.2609003815861075}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001619", "node_attrs": {"div": 14, "num_date": {"value": 2020.5142529220968, "confidence": [2020.4542111487187, 2020.556669390952]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC16507/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6079234972678, "confidence": [2020.6079234972678, 2020.6079234972678]}, "tsne_x": {"value": -18.65143972092832}, "umap_x": {"value": -0.8944443}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.6479077}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.5844242411988}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.667735803172}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.6932578139556129}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -5.016729970190296}, "mds3": {"value": -10.522187584559529}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.5536613382455102}}, "branch_attrs": {"mutations": {"nuc": ["C3264T", "C5746T", "G28936A"]}}}, {"name": "NODE_0001155", "node_attrs": {"div": 15, "num_date": {"value": 2020.5878361944485, "confidence": [2020.503811665158, 2020.641698178927]}}, "branch_attrs": {"mutations": {"nuc": ["C9996T"]}}, "children": [{"name": "AUS/VIC15172/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6489071038252, "confidence": [2020.6489071038252, 2020.6489071038252]}, "tsne_x": {"value": -18.410272570716995}, "umap_x": {"value": -1.5680319}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7853675}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.3460235657648666}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.68258585775491}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.6211365975486047}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.380700863010962}, "mds3": {"value": -7.811830223570305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 6.574572368600787}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC13926/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.6953551912568, "confidence": [2020.6953551912568, 2020.6953551912568]}, "tsne_x": {"value": -18.12836057226429}, "umap_x": {"value": 0.11786157}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -4.612777}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.515498437132077}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -18.289549597963443}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.9392082589727515}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -8.631324570827651}, "mds3": {"value": -13.50006399102936}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -7.144919870036676}}, "branch_attrs": {"mutations": {"nuc": ["T12215C", "C17135T", "A20239T", "G22927T", "A28416T"], "S": ["L455F"]}, "labels": {"aa": "S: L455F"}}}]}]}]}, {"name": "NODE_0001625", "node_attrs": {"div": 14, "num_date": {"value": 2020.4789289814048, "confidence": [2020.451156303158, 2020.5032776294106]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC3864/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5314207650274, "confidence": [2020.5314207650274, 2020.5314207650274]}, "tsne_x": {"value": -18.463181346646348}, "umap_x": {"value": -1.1471704}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.8115225}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.598264257598556}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.68628633710943}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.390578814701042}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.4450842928781733}, "mds3": {"value": -8.953731138451015}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.474912647064975}}, "branch_attrs": {"mutations": {"nuc": ["C7113T"]}}}, {"name": "NODE_0001626", "node_attrs": {"div": 14, "num_date": {"value": 2020.4851883732995, "confidence": [2020.4623166173228, 2020.5135281958815]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001627", "node_attrs": {"div": 14, "num_date": {"value": 2020.500043802641, "confidence": [2020.4686442072682, 2020.5317913203853]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001628", "node_attrs": {"div": 14, "num_date": {"value": 2020.5331745136361, "confidence": [2020.5009359014007, 2020.5341530054645]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC16026/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5860655737704, "confidence": [2020.5860655737704, 2020.5860655737704]}, "tsne_x": {"value": -18.465243594923976}, "umap_x": {"value": -1.1015819}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.864999}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.791371223563504}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.68765688806696}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.8985776448416285}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.550980724308366}, "mds3": {"value": -9.067931937817054}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.609885679716148}}, "branch_attrs": {"mutations": {"nuc": ["A26162G"]}}}, {"name": "AUS/VIC4919/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5341530054645, "confidence": [2020.5341530054645, 2020.5341530054645]}, "tsne_x": {"value": -18.351763337166915}, "umap_x": {"value": -2.030275}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7464666}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.995839884011074}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.63103785372546}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.043069943082525}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.087338522579057}, "mds3": {"value": -7.080263937809124}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.5095731852741994}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001632", "node_attrs": {"div": 14, "num_date": {"value": 2020.513796656453, "confidence": [2020.4712883985555, 2020.5446679801482]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC14283/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5887978142077, 2020.5887978142077]}, "tsne_x": {"value": -18.46337361031111}, "umap_x": {"value": -1.2156669}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.8738656}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.600196502443896}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.68680084354701}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.0243037795809755}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.470768883925801}, "mds3": {"value": -8.875715988211585}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.476348509131204}}, "branch_attrs": {"mutations": {"nuc": ["C29118T"]}}}, {"name": "NODE_0001634", "node_attrs": {"div": 14, "num_date": {"value": 2020.5294729239479, "confidence": [2020.472476811236, 2020.5482272917309]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC7555/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.561475409836, "confidence": [2020.561475409836, 2020.561475409836]}, "tsne_x": {"value": -18.502718082257097}, "umap_x": {"value": -0.9775477}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7522893}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.445570934038967}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.702828470912245}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.259568398199591}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.613443597010872}, "mds3": {"value": -10.261928849922834}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.4812580681649696}}, "branch_attrs": {"mutations": {"nuc": ["C3784T", "C15324T"]}}}, {"name": "AUS/VIC9957/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.558743169399, "confidence": [2020.558743169399, 2020.558743169399]}, "tsne_x": {"value": -18.47205921452895}, "umap_x": {"value": -1.0486487}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7665753}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.777057907631127}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.679278604050587}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.129444006197423}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.858250013069211}, "mds3": {"value": -9.387939141109078}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -9.089384508745312}}, "branch_attrs": {"mutations": {"nuc": ["G18859T"]}}}]}]}]}, {"name": "NODE_0001635", "node_attrs": {"div": 14, "num_date": {"value": 2020.496527154253, "confidence": [2020.4635169653943, 2020.5220608889786]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001119", "node_attrs": {"div": 15, "num_date": {"value": 2020.620347467852, "confidence": [2020.527470112747, 2020.685078936151]}}, "branch_attrs": {"mutations": {"nuc": ["T1297C"]}}, "children": [{"name": "AUS/VIC16197/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.7554644808743, "confidence": [2020.7554644808743, 2020.7554644808743]}, "tsne_x": {"value": -18.45919836746732}, "umap_x": {"value": -1.0107855}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.727529}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.634535404285083}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.663590233088335}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.1109096561082685}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.8955574476529216}, "mds3": {"value": -9.386091422370733}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.10988593882563}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC13702/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_x": {"value": -18.182573459783026}, "umap_x": {"value": -1.0926969}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.763263}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.6173076373737222}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.34935760420345}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.5814096952035188}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -7.15863115521809}, "mds3": {"value": -9.658190065307576}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.3820459365522649}}, "branch_attrs": {"mutations": {"nuc": ["A3186C", "T23633C", "C29769T"], "S": ["S691P"]}, "labels": {"aa": "S: S691P"}}}]}, {"name": "NODE_0001638", "node_attrs": {"div": 14, "num_date": {"value": 2020.503983038278, "confidence": [2020.4658227328996, 2020.5276170636]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001134", "node_attrs": {"div": 15, "num_date": {"value": 2020.5422287057124, "confidence": [2020.520898140875, 2020.5724043715848]}}, "branch_attrs": {"mutations": {"nuc": ["G15594T"]}}, "children": [{"name": "AUS/VIC10359/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5806010928961, "confidence": [2020.5806010928961, 2020.5806010928961]}, "tsne_x": {"value": -18.481312232568204}, "umap_x": {"value": -1.1070033}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.798932}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.771584026461743}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.680050537061433}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.7358971222168076}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.245169362959567}, "mds3": {"value": -9.784906199757543}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.515398208422325}}, "branch_attrs": {"mutations": {"nuc": ["C16289T"]}}}, {"name": "AUS/VIC13110/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5724043715848, "confidence": [2020.5724043715848, 2020.5724043715848]}, "tsne_x": {"value": -18.46216493533089}, "umap_x": {"value": -1.0569922}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7739296}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.506639000168912}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.680338580364467}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.748142122994708}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.821597647887059}, "mds3": {"value": -9.333809855309353}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.945297108175188}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001640", "node_attrs": {"div": 15, "num_date": {"value": 2020.5665557926513, "confidence": [2020.5193156223966, 2020.5912898458923]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC16641/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6024590163934, "confidence": [2020.6024590163934, 2020.6024590163934]}, "tsne_x": {"value": -18.37876085077962}, "umap_x": {"value": -1.1197535}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.790283}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.4836703542639205}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.52382200200272}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.5414012735715314}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -5.730129705303124}, "mds3": {"value": -9.165154682307552}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.676135438085482}}, "branch_attrs": {"mutations": {"nuc": ["G12256T", "G20489T"]}}}, {"name": "AUS/VIC13289/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6571038251366, "confidence": [2020.6571038251366, 2020.6571038251366]}, "tsne_x": {"value": -18.40978817348765}, "umap_x": {"value": -1.3509132}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.8138914}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.303064040810393}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.643960654035794}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.668323338186622}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.7715164510705605}, "mds3": {"value": -8.479534793384348}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.4499524578448644}}, "branch_attrs": {"mutations": {"nuc": ["C18747T"]}}}]}]}, {"name": "NODE_0001642", "node_attrs": {"div": 14, "num_date": {"value": 2020.5131433417898, "confidence": [2020.4826452581508, 2020.5285041953857]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC5655/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_x": {"value": -18.44421984429321}, "umap_x": {"value": -1.2074157}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.8495293}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.27562171583711}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.67807761933774}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.2536149592815256}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.0080088750699}, "mds3": {"value": -8.326151675263722}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.3578906681823164}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001643", "node_attrs": {"div": 14, "num_date": {"value": 2020.5202592490034, "confidence": [2020.4838345506676, 2020.5349716795522]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001644", "node_attrs": {"div": 14, "num_date": {"value": 2020.52964811226, "confidence": [2020.5099092574633, 2020.5420711204472]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001645", "node_attrs": {"div": 14, "num_date": {"value": 2020.5420927584237, "confidence": [2020.5152779926655, 2020.6026334622072]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC9255/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6434426229507, "confidence": [2020.6434426229507, 2020.6434426229507]}, "tsne_x": {"value": -18.496215305216428}, "umap_x": {"value": -0.9735236}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7341094}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.599473625873669}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.69956426011924}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.694609026495431}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.6236430470512655}, "mds3": {"value": -10.194010003600932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.474406799151791}}, "branch_attrs": {"mutations": {"nuc": ["C21622T", "C29523T"]}}}, {"name": "AUS/VIC10437/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6707650273224, "confidence": [2020.6707650273224, 2020.6707650273224]}, "tsne_x": {"value": -18.49311953856012}, "umap_x": {"value": -0.9600202}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7438407}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.792078313554434}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.699055654655492}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 3.897870045791162}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.761425649829851}, "mds3": {"value": -10.228685798537684}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.609516348807887}}, "branch_attrs": {"mutations": {"nuc": ["C6594T", "C18814T"]}}}]}, {"name": "NODE_0001647", "node_attrs": {"div": 14, "num_date": {"value": 2020.5398179702668, "confidence": [2020.5138875048885, 2020.5502510879423]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC9492/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6243169398906, "confidence": [2020.6243169398906, 2020.6243169398906]}, "tsne_x": {"value": -18.48916935222077}, "umap_x": {"value": -1.0809822}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7836075}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.790870794656069}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.69532830951194}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.3232353533808698}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.261400193940932}, "mds3": {"value": -9.652783920035096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -5.603701596527294}}, "branch_attrs": {"mutations": {"nuc": ["C7162T", "C28313T"]}}}, {"name": "NODE_0001649", "node_attrs": {"div": 14, "num_date": {"value": 2020.5500352113431, "confidence": [2020.5171739602204, 2020.5505464480875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC6953/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5669398907103, "confidence": [2020.5669398907103, 2020.5669398907103]}, "tsne_x": {"value": -18.388855520221483}, "umap_x": {"value": -1.6901209}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7654486}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.3571002727640824}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.644822151132058}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.150304552721042}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.82623183281178}, "mds3": {"value": -7.093382907741514}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.5529096256590555}}, "branch_attrs": {"mutations": {"nuc": ["G14371T"]}}}, {"name": "AUS/VIC5540/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5505464480875, "confidence": [2020.5505464480875, 2020.5505464480875]}, "tsne_x": {"value": -18.438197469202105}, "umap_x": {"value": -1.6765687}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7947063}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.998387433935589}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.673733337956676}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.6955190084602945}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -2.6158642815944533}, "mds3": {"value": -8.268810654775}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 0.1018396063735665}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001651", "node_attrs": {"div": 14, "num_date": {"value": 2020.5285041953857, "confidence": [2020.4836642295936, 2020.5543991791503]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001652", "node_attrs": {"div": 14, "num_date": {"value": 2020.5422382032923, "confidence": [2020.4842497908219, 2020.561317401305]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC14296/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5860655737704, "confidence": [2020.5860655737704, 2020.5860655737704]}, "tsne_x": {"value": -18.4033790930384}, "umap_x": {"value": -1.4181061}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.829516}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.132438523408652}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.654065698320608}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.2309624730155375}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.706011480209813}, "mds3": {"value": -8.317903258944341}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.078817561674854}}, "branch_attrs": {"mutations": {"nuc": ["T22825C", "G26526T"]}}}, {"name": "NODE_0001115", "node_attrs": {"div": 15, "num_date": {"value": 2020.5806010928961, "confidence": [2020.554291260476, 2020.5806010928961]}}, "branch_attrs": {"mutations": {"nuc": ["C18568T"]}}, "children": [{"name": "AUS/VIC10857/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6734972677596, "confidence": [2020.6734972677596, 2020.6734972677596]}, "tsne_x": {"value": -18.506256755325463}, "umap_x": {"value": -0.97894317}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7377477}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.65161959282043}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.681830571611943}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.375548138403995}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -4.824371184560534}, "mds3": {"value": -10.284303243280332}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.882219580160517}}, "branch_attrs": {"mutations": {"nuc": ["C23625T"], "S": ["A688V"]}, "labels": {"aa": "S: A688V"}}}, {"name": "AUS/VIC17665/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5806010928961, "confidence": [2020.5806010928961, 2020.5806010928961]}, "tsne_x": {"value": -18.465957577430054}, "umap_x": {"value": -1.1201298}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7773256}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.6002947544593695}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.687302872049038}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.9464027468072147}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -3.5431825859456287}, "mds3": {"value": -9.085320573192469}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.475921840027091}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001656", "node_attrs": {"div": 14, "num_date": {"value": 2020.5399824232911, "confidence": [2020.4839324950358, 2020.575506196941]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC11562/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6543715846994, "confidence": [2020.6543715846994, 2020.6543715846994]}, "tsne_x": {"value": -18.29673181290489}, "umap_x": {"value": -0.2030145}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.02985}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.611302837281534}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -18.13282438640544}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 4.257695548946349}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -7.087601272228722}, "mds3": {"value": -12.118615013007798}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -4.438751555712374}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "T21738C", "G24257T", "G28027T", "G29706C"], "S": ["F59S", "A899S"]}, "labels": {"aa": "S: F59S, A899S"}}}, {"name": "NODE_0001142", "node_attrs": {"div": 17, "num_date": {"value": 2020.6459176239707, "confidence": [2020.6029895698266, 2020.6690608757121]}}, "branch_attrs": {"mutations": {"nuc": ["C12116T", "C21516T", "A27024C"]}}, "children": [{"name": "AUS/VIC10647/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6707650273224, "confidence": [2020.6707650273224, 2020.6707650273224]}, "tsne_x": {"value": -17.998978172773466}, "umap_x": {"value": -1.1472282}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.75256}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.1320176303193303}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.76642923749656}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.4126768871947193}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -6.011761658118553}, "mds3": {"value": -9.483460854895329}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -2.0704747380624657}}, "branch_attrs": {"mutations": {"nuc": ["C13536T"]}}}, {"name": "NODE_0001658", "node_attrs": {"div": 17, "num_date": {"value": 2020.6651152225209, "confidence": [2020.6204069769813, 2020.7044169923468]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC16300/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7937158469945, "confidence": [2020.7937158469945, 2020.7937158469945]}, "tsne_x": {"value": -17.894242081095797}, "umap_x": {"value": 0.06459572}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -4.673405}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.446049611054073}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.82124803530347}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.6180600186920224}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -7.3428293471789985}, "mds3": {"value": -12.519929411486196}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -3.47443493599233}}, "branch_attrs": {"mutations": {"nuc": ["C10775T", "C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "AUS/VIC14052/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7117486338798, "confidence": [2020.7117486338798, 2020.7117486338798]}, "tsne_x": {"value": -17.987687230577784}, "umap_x": {"value": -1.2426678}, "Nextstrain_clade": {"value": "20F"}, "umap_y": {"value": -5.7299314}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.294253633867654}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "11"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "tsne_y": {"value": -17.783752847474624}, "country": {"value": "Australia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.0229867721231379}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "division": {"value": "Victoria"}, "mds2": {"value": -5.457873981300403}, "mds3": {"value": -9.44992321645131}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 6.17878745084709}}, "branch_attrs": {"mutations": {"nuc": ["T27483C"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001356", "node_attrs": {"div": 8, "num_date": {"value": 2020.19724001772, "confidence": [2020.0840108750344, 2020.4037864764114]}}, "branch_attrs": {"mutations": {"nuc": ["C23604A"], "S": ["P681H"]}, "labels": {"aa": "S: P681H"}}, "children": [{"name": "NODE_0001660", "node_attrs": {"div": 8, "num_date": {"value": 2020.3589330187867, "confidence": [2020.0651143914092, 2020.727162283425]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001358", "node_attrs": {"div": 11, "num_date": {"value": 2020.5885584670375, "confidence": [2020.3774799763314, 2020.7601141188547]}}, "branch_attrs": {"mutations": {"nuc": ["C1648T", "C13554T", "A17082G"]}}, "children": [{"name": "TWN/CGMH-CGU-40/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8592896174864, "confidence": [2020.8592896174864, 2020.8592896174864]}, "tsne_x": {"value": -10.302938099763129}, "umap_x": {"value": 0.07951231}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -4.6853952}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.917277379502179}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.773501043563073}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.1864785126891695}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Taiwan"}, "mds2": {"value": -0.7803740120742794}, "mds3": {"value": -12.94122636353448}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -19.78061898144776}}, "branch_attrs": {"mutations": {"nuc": ["T9508C", "T12700G", "T24733C", "A25910G", "C26464T", "G27441T", "T28759G"]}}}, {"name": "NODE_0001359", "node_attrs": {"div": 15, "num_date": {"value": 2020.799180327869, "confidence": [2020.7527986329023, 2020.799180327869]}}, "branch_attrs": {"mutations": {"nuc": ["G1738T", "T4330C", "C22713T", "A29437G"], "S": ["P384L"]}, "labels": {"aa": "S: P384L"}}, "children": [{"name": "NZL/20CV0458/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.799180327869, "confidence": [2020.799180327869, 2020.799180327869]}, "tsne_x": {"value": -10.13550974359284}, "umap_x": {"value": -0.7887069}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.08139}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.02715104966173}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.906055082493427}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.931060425337316}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Canterbury"}, "mds2": {"value": 2.1547459625085814}, "mds3": {"value": -10.793663352923485}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": -0.1155326161320096}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20CV0496/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8346994535518, "confidence": [2020.8346994535518, 2020.8346994535518]}, "tsne_x": {"value": -10.133237362846964}, "umap_x": {"value": -0.78973204}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -5.081246}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.808069501098773}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.90616268505042}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.908176308381847}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Canterbury"}, "mds2": {"value": 2.316562239406675}, "mds3": {"value": -10.622887685941262}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "7"}, "pca2": {"value": 11.22264465992816}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001664", "node_attrs": {"div": 8, "num_date": {"value": 2020.4122722898628, "confidence": [2020.0759778459985, 2020.740082409446]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0175/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.190410958904, "confidence": [2021.190410958904, 2021.190410958904]}, "tsne_x": {"value": -14.56439520952209}, "umap_x": {"value": 0.8854334}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -3.784423}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.840743190240355}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.216"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "16"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -16.301125722156865}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.254943225050872}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "New Zealand"}, "mds2": {"value": -5.778766092311601}, "mds3": {"value": -18.956570143857423}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.1558618570459481}}, "branch_attrs": {"mutations": {"nuc": ["C1929T", "G1957T", "A2139G", "T2981C", "C5884T", "C6336T", "C8809T", "G11287A", "C17333T", "C17934T", "C24463T", "C26060T", "G28703T", "A29517G"]}}}, {"name": "NODE_0001361", "node_attrs": {"div": 25, "num_date": {"value": 2021.0662747487775, "confidence": [2020.8453759494698, 2021.184079220829]}}, "branch_attrs": {"mutations": {"nuc": ["A3852T", "C3961T", "G7798T", "C9072T", "C9891T", "C10116T", "T11288-", "C11289-", "T11290-", "G11291-", "T11296-", "G20578A", "C21846T", "T21994-", "G23012A", "T23287C", "G23948C", "C24382T", "C25276A", "T26767C", "A27887-", "A27888-", "C27889-", "G27890-", "A27891-", "A27892-", "C27893-", "A27894-", "T27895-", "G27896-", "A27897-", "A27898-", "A27899-", "T27900-", "T27901-", "G28209T", "A28271G", "C28896-", "T28897-", "A28898-", "C29769T"], "S": ["T95I", "Y144X", "E484K", "D796H", "*1274X"]}, "labels": {"aa": "S: T95I, Y144X, E484K, D796H, *1274X"}}, "children": [{"name": "USA/CA-CDPH-3000048083/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_x": {"value": -8.53011134433989}, "umap_x": {"value": 1.6484336}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -1.8274516}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.939992201611062}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.318"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.079415636039874}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -21.481855797702885}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "USA"}, "mds2": {"value": -5.9337020636707365}, "mds3": {"value": -24.755448138439807}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -12.025382300410469}}, "branch_attrs": {"mutations": {"nuc": ["C7006T", "-11288A", "-11291A", "-11296G", "G20730T", "-21994C", "C27143T", "-27887T", "-27901A", "G27996T", "-28898G", "C29870A"], "S": ["X144Y", "X1274*"]}, "labels": {"aa": "S: X144Y, X1274*"}}}, {"name": "NODE_0001666", "node_attrs": {"div": 25, "num_date": {"value": 2021.0921712570598, "confidence": [2020.8502231979203, 2021.1927136436425]}}, "branch_attrs": {"mutations": {"nuc": ["G11292-", "T11293-", "T11294-", "T11295-", "T21992-", "A21993-"], "S": ["X144-", "X1274*"]}, "labels": {"aa": "S: X144-, X1274*"}}, "children": [{"name": "IMS-10004-CVDP-A7EC4636-3B08-4669-ADAE-351CF64A30AE", "node_attrs": {"div": 33, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_x": {"value": -8.585529733917625}, "umap_x": {"value": 1.6430638}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -1.8008789}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.1185937346101792}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "AZ.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.085521758737288}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -26.22325208785176}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": -1.6898083040479834}, "mds3": {"value": -24.11463790312378}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -8.641180932763302}}, "branch_attrs": {"mutations": {"nuc": ["C10369T", "C11565T", "C12400T", "C16887T", "G21004T", "T25461A", "G28975T", "C29724T"]}}}, {"name": "GAB/5079_Gabon/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.3082191780823, "confidence": [2021.3082191780823, 2021.3082191780823]}, "tsne_x": {"value": -8.583012540626362}, "umap_x": {"value": 1.6969484}, "Nextstrain_clade": {"value": "20B"}, "umap_y": {"value": -1.9076424}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.469402340591494}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.318"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": -12.093426127955675}, "country": {"value": "Gabon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 9.903199009233248}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "division": {"value": "Gabon"}, "mds2": {"value": 35.16307488309818}, "mds3": {"value": -2.667884721015177}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 11.550603158195514}}, "branch_attrs": {"mutations": {"nuc": ["G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "G1439T", "T5251C", "T14349C", "C22432T", "C25046T"], "S": ["P1162S"]}, "labels": {"aa": "S: P1162S"}}}]}]}]}]}, {"name": "NODE_0001363", "node_attrs": {"div": 9, "num_date": {"value": 2020.2220783281414, "confidence": [2020.0960401847826, 2020.4165572819547]}}, "branch_attrs": {"mutations": {"nuc": ["T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "A23063T"], "S": ["N501Y"]}, "labels": {"aa": "S: N501Y"}}, "children": [{"name": "NODE_0001364", "node_attrs": {"div": 10, "num_date": {"value": 2020.2451075891533, "confidence": [2020.1185642426458, 2020.4275514115516]}}, "branch_attrs": {"mutations": {"nuc": ["C23525T"], "S": ["H655Y"]}, "labels": {"aa": "S: H655Y"}}, "children": [{"name": "NODE_0001365", "node_attrs": {"div": 33, "num_date": {"value": 2020.5856580245152, "confidence": [2020.5464869611287, 2020.6314073400677]}}, "branch_attrs": {"mutations": {"nuc": ["T733C", "C2749T", "C3828T", "A5648C", "A6319G", "A6613G", "C12778T", "C13860T", "G17259T", "C21614T", "C21621A", "C21638T", "G21974T", "G22132T", "A22812C", "G23012A", "C24642T", "G25088T", "T26149C", "G28167A", "C28512G", "A28877T", "G28878C"], "S": ["L18F", "T20N", "P26S", "D138Y", "R190S", "K417T", "E484K", "T1027I", "V1176F"]}, "labels": {"aa": "S: L18F, T20N, P26S, D138Y, R190S, K417T, E484K, T1027I, V1176F"}}, "children": [{"name": "NODE_0001670", "node_attrs": {"div": 34, "num_date": {"value": 2021.1271440389187, "confidence": [2020.6415589161145, 2021.3382650712074]}}, "branch_attrs": {"mutations": {"nuc": ["T29834A"]}}, "children": [{"name": "BRA/MA-NXBS1434GENOV70974874617/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_x": {"value": -27.65930426515824}, "umap_x": {"value": 4.1083784}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2226267}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 26.97836622376552}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.11456572560493}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 31.48306795631096}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -4.136595318045061}, "mds3": {"value": -20.39013375179742}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 4.8363743465591496}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "C6555T", "G17533A"]}}}, {"name": "NODE_0001367", "node_attrs": {"div": 38, "num_date": {"value": 2021.3215346632576, "confidence": [2021.0660990752224, 2021.448632739364]}}, "branch_attrs": {"mutations": {"nuc": ["A3517G", "C10615T", "C15714T", "C24787T"]}}, "children": [{"name": "BRA/21891035MCC/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": -27.47799421419716}, "umap_x": {"value": 3.8883312}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.9872365}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.520229619490209}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.746187666472924}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 41.38634422810949}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 3.716222401473018}, "mds3": {"value": -24.71304062826166}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -4.705748651212188}}, "branch_attrs": {"mutations": {"nuc": ["C1380T", "C2710T", "G17679T", "C19545T"]}}}, {"name": "BRA/21899151LVS/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": -27.49184617867379}, "umap_x": {"value": 3.8290684}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.074325}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.682389593079218}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.666677381612567}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 42.0889173835619}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 1.2142946833847423}, "mds3": {"value": -25.86371183972521}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.454857207957635}}, "branch_attrs": {"mutations": {"nuc": ["C19862T", "G22708T", "C27688T", "C27707T", "G28086T"]}}}]}]}, {"name": "NODE_0001368", "node_attrs": {"div": 34, "num_date": {"value": 2020.607375309618, "confidence": [2020.571637961054, 2020.6365487553]}}, "branch_attrs": {"mutations": {"nuc": ["A23604C"], "S": ["H681P"]}, "labels": {"aa": "S: H681P"}}, "children": [{"name": "NODE_0001369", "node_attrs": {"div": 35, "num_date": {"value": 2020.6244241588233, "confidence": [2020.592233010079, 2020.6412947317792]}}, "branch_attrs": {"mutations": {"nuc": ["C6627T"]}}, "children": [{"name": "BRA/HRMS_1490/2020", "node_attrs": {"div": 38, "num_date": {"value": 2020.646174863388, "confidence": [2020.646174863388, 2020.646174863388]}, "tsne_x": {"value": -27.59531798547261}, "umap_x": {"value": 4.0749664}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.3033524}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.907063816104106}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.28430466207928}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 38.78099959076658}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Mato Grosso do Sul"}, "mds2": {"value": -0.9969214296515408}, "mds3": {"value": -17.540350136473272}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -19.72094073540985}}, "branch_attrs": {"mutations": {"nuc": ["A6276G", "C26801T", "G27390C"]}}}, {"name": "NZL/21MV0444/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.36301369863, "confidence": [2021.36301369863, 2021.36301369863]}, "tsne_x": {"value": -27.17934634091485}, "umap_x": {"value": 3.8096023}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.091984}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.995786909102957}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.478363576179468}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 45.60585289540572}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "New Zealand"}, "mds2": {"value": 9.366459359524026}, "mds3": {"value": -17.56117108447657}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 0.1841384155799683}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "C3924T", "A5899G", "T6407A", "C6541T", "C6982T", "T7942C", "T18429C", "G29764T"]}}}]}, {"name": "NODE_0001674", "node_attrs": {"div": 35, "num_date": {"value": 2020.8808530736455, "confidence": [2020.6263488390546, 2021.0408929453704]}}, "branch_attrs": {"mutations": {"nuc": ["T29834A"]}}, "children": [{"name": "NODE_0001676", "node_attrs": {"div": 35, "num_date": {"value": 2020.9431670689833, "confidence": [2020.6292211331934, 2021.1105082175573]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001406", "node_attrs": {"div": 36, "num_date": {"value": 2020.9928616139869, "confidence": [2020.716237198441, 2021.2268493229699]}}, "branch_attrs": {"mutations": {"nuc": ["C7764T"]}}, "children": [{"name": "BRA/RJ-NVBS3554GENOV827840274596/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5301369863014, 2021.5301369863014]}, "tsne_x": {"value": -27.19252389381209}, "umap_x": {"value": 3.7692013}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.142412}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.301749812760758}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.61736303140803}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 49.6631014085494}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 8.03589405629143}, "mds3": {"value": -16.038673572488914}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.709462892180791}}, "branch_attrs": {"mutations": {"nuc": ["G174T", "G2782T", "C4999T", "G5326T", "C10189T", "C11195T", "C15588T", "C22636T", "C23185T", "C26455T", "C29754T"]}}}, {"name": "BRA/SP-NXBS381GENOV701210265554/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_x": {"value": -27.24806139847325}, "umap_x": {"value": 3.8810167}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.030597}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.672225703841793}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.143144444450076}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 44.09968404889496}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 1.6095402196142987}, "mds3": {"value": -21.236098333621253}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -3.717123522649388}}, "branch_attrs": {"mutations": {"nuc": ["C4890T", "C11747T", "G12566T", "A15082G", "C24616T", "C27389T", "C29724T", "G29747T"]}}}]}, {"name": "NODE_0001678", "node_attrs": {"div": 35, "num_date": {"value": 2020.943785193613, "confidence": [2020.6381334293956, 2021.1191177228031]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001422", "node_attrs": {"div": 36, "num_date": {"value": 2021.02906861145, "confidence": [2020.699700548472, 2021.1822346268432]}}, "branch_attrs": {"mutations": {"nuc": ["C25413T"]}}, "children": [{"name": "BRA/SC-NVBS4823GENOV045615933480/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.6068493150685, "confidence": [2021.6068493150685, 2021.6068493150685]}, "tsne_x": {"value": -27.47913087068991}, "umap_x": {"value": 3.7481592}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.15831}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.15675907790319}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.369793813043836}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 52.42074060407075}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 7.017542817752728}, "mds3": {"value": -16.07621472547845}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -7.221156988410022}}, "branch_attrs": {"mutations": {"nuc": ["C900T", "C4331T", "C5869T", "C14183T", "G19872A", "C22414T", "C23745T", "C25069T", "T25570C", "G25879A", "C26607T", "C27389T", "C29420A"], "S": ["P728L"]}, "labels": {"aa": "S: P728L"}}}, {"name": "NODE_0001423", "node_attrs": {"div": 38, "num_date": {"value": 2021.1237098670067, "confidence": [2020.9068847890474, 2021.2273986341975]}}, "branch_attrs": {"mutations": {"nuc": ["A10983G", "C22945T"]}}, "children": [{"name": "USA/IL-CDC-QDX23572411/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_x": {"value": -28.074100954033085}, "umap_x": {"value": 3.905109}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.9367814}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.965646723798806}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.263123122551196}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 42.91676543364827}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Illinois"}, "mds2": {"value": 3.849015274304575}, "mds3": {"value": -21.21235631691668}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -0.00905626806097}}, "branch_attrs": {"mutations": {"nuc": ["C5770T", "A7411C", "G9242A", "G17478A", "C25886T"]}}}, {"name": "NODE_0001681", "node_attrs": {"div": 38, "num_date": {"value": 2021.1458229963696, "confidence": [2020.908379502479, 2021.244716989366]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-CDC-QDX26380561/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.4917808219177, "confidence": [2021.4917808219177, 2021.4917808219177]}, "tsne_x": {"value": -28.35696891312761}, "umap_x": {"value": 3.7370687}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.176803}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.9664882792860405}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.471140532599616}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 50.55005480503474}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Florida"}, "mds2": {"value": -0.4020164121260325}, "mds3": {"value": -18.440877807790457}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 0.0167053487264383}}, "branch_attrs": {"mutations": {"nuc": ["C2937T", "C6195T", "G14575T", "C15960T", "T20432C", "T25666C", "G25737T", "G25907T", "C26688T", "C29743T"]}}}, {"name": "NODE_0001424", "node_attrs": {"div": 39, "num_date": {"value": 2021.2411594733526, "confidence": [2021.063362151925, 2021.3063649080698]}}, "branch_attrs": {"mutations": {"nuc": ["C2110T"]}}, "children": [{"name": "USA/AZ-4193/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4972602739726, "confidence": [2021.4972602739726, 2021.4972602739726]}, "tsne_x": {"value": -27.95646943882374}, "umap_x": {"value": 3.9722157}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.627763}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.089172010302262}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.21260233800518}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 41.20070176403497}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Arizona"}, "mds2": {"value": 3.6648488698372472}, "mds3": {"value": -19.55661074040027}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.840291142765982}}, "branch_attrs": {"mutations": {"nuc": ["C2455A", "G4504T"]}}}, {"name": "USA/TN-SPHL-0185/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_x": {"value": -28.04903089741966}, "umap_x": {"value": 3.9346364}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.6849504}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 51.08982269966057}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.198775730217369}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 42.83215973084589}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Tennessee"}, "mds2": {"value": 7.895941551391076}, "mds3": {"value": -16.09538882694278}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 15.045107406303249}}, "branch_attrs": {"mutations": {"nuc": ["G2995T", "C23896T", "C26198T", "A29731G"]}}}]}]}]}]}, {"name": "NODE_0001683", "node_attrs": {"div": 35, "num_date": {"value": 2020.9945465241667, "confidence": [2020.6352575997626, 2021.128194849403]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001427", "node_attrs": {"div": 39, "num_date": {"value": 2021.0885363195098, "confidence": [2020.9469586013568, 2021.1383561643836]}}, "branch_attrs": {"mutations": {"nuc": ["C21530G", "T21534A", "G21535T", "A21536C"]}}, "children": [{"name": "Brazil/BR-SP-UW21022072474/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.1383561643836, "confidence": [2021.1383561643836, 2021.1383561643836]}, "tsne_x": {"value": -27.643113954970254}, "umap_x": {"value": 4.0725045}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.3700614}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.0164504239581}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.374330051976129}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.5219822241958}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 3.5624722945718696}, "mds3": {"value": -17.58713457085717}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.59025523279964}}, "branch_attrs": {"mutations": {"nuc": ["C17172T", "C22286T"], "S": ["L242F"]}, "labels": {"aa": "S: L242F"}}}, {"name": "NODE_0001685", "node_attrs": {"div": 39, "num_date": {"value": 2021.103013045293, "confidence": [2020.949449165729, 2021.1694081870196]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/BR-SP-UW21040569277/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_x": {"value": -27.63059701258125}, "umap_x": {"value": 3.978494}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.5775795}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.03336893058431}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.45947066049129}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.82657772742588}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 4.364934116089853}, "mds3": {"value": -19.38026787055152}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.541169376722284}}, "branch_attrs": {"mutations": {"nuc": ["C23520T", "G28079T", "A28858G"], "S": ["A653V"]}, "labels": {"aa": "S: A653V"}}}, {"name": "Brazil/BR-SP-UW21032357430/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.2232876712328, "confidence": [2021.2232876712328, 2021.2232876712328]}, "tsne_x": {"value": -27.532626609355045}, "umap_x": {"value": 3.9269931}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.883209}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.03312024918713}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.604427217065057}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 44.82815100548}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 3.1513961214121995}, "mds3": {"value": -16.94076049535725}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.519976454125857}}, "branch_attrs": {"mutations": {"nuc": ["C1528T", "C4582T", "C8344T", "G17562T", "C29171T"]}}}]}]}, {"name": "NODE_0001417", "node_attrs": {"div": 36, "num_date": {"value": 2021.0883230862046, "confidence": [2020.812366259765, 2021.2384472552073]}}, "branch_attrs": {"mutations": {"nuc": ["T592C"]}}, "children": [{"name": "BRA/PR-NVBS3806GENOV827840496769/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5301369863014, 2021.5301369863014]}, "tsne_x": {"value": -28.1958467355876}, "umap_x": {"value": 3.848146}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.025304}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.5208929555121}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.144424573599986}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 45.05598022607991}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 7.367762439635941}, "mds3": {"value": -18.56925451105178}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -6.221633263022498}}, "branch_attrs": {"mutations": {"nuc": ["G571A", "C6578T", "C12676T", "C19018T", "C26456T", "G26501T", "C28708T", "C28948T"]}}}, {"name": "NODE_0001418", "node_attrs": {"div": 37, "num_date": {"value": 2021.142710036463, "confidence": [2020.899716433039, 2021.2761259818753]}}, "branch_attrs": {"mutations": {"nuc": ["C9891T"]}}, "children": [{"name": "BRA/RJ-NXBS730GENOV700905266227/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.3383561643836, "confidence": [2021.3383561643836, 2021.3383561643836]}, "tsne_x": {"value": -28.17291767818459}, "umap_x": {"value": 3.9614928}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.6031294}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.9644228387143068}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.192748330650383}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.12398539753647}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -9.173427818874217}, "mds3": {"value": -20.25504849411809}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -3.627846620736857}}, "branch_attrs": {"mutations": {"nuc": ["T1468C", "T11076C", "G22801T", "G24199T", "G25244T", "G25555T", "C25572T"], "S": ["V1228L"]}, "labels": {"aa": "S: V1228L"}}}, {"name": "NODE_0001419", "node_attrs": {"div": 38, "num_date": {"value": 2021.2406831060107, "confidence": [2021.0343874424054, 2021.4084371558179]}}, "branch_attrs": {"mutations": {"nuc": ["A4040G"]}}, "children": [{"name": "BRA/RJ-NVBS3666GENOV827795408381/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5027397260274, "confidence": [2021.5027397260274, 2021.5027397260274]}, "tsne_x": {"value": -28.04423443629136}, "umap_x": {"value": 3.9126751}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.803476}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.559220961261591}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.141439546313794}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 43.15916609441184}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 5.723810330192485}, "mds3": {"value": -17.700168494636713}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.745915679861753}}, "branch_attrs": {"mutations": {"nuc": ["T2372A", "C6040T", "A24922G", "C25665T"]}}}, {"name": "BRA/PR-NVBS4551GENOV827946884002/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.5958904109589, "confidence": [2021.5958904109589, 2021.5958904109589]}, "tsne_x": {"value": -28.36702207256336}, "umap_x": {"value": 3.7748823}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.138358}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.96006769006289}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.113694838573606}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 47.44908064212788}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 12.36980794356217}, "mds3": {"value": -16.834450407700842}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.204085419000618}}, "branch_attrs": {"mutations": {"nuc": ["G15652T", "C17474T", "A20055G", "C22971A", "C23604G", "G25266T", "C26039T", "G27915T", "G28077T"], "S": ["T470N", "P681R", "C1235F"]}, "labels": {"aa": "S: T470N, P681R, C1235F"}}}]}]}]}]}]}]}, {"name": "NODE_0001689", "node_attrs": {"div": 35, "num_date": {"value": 2020.9326962181758, "confidence": [2020.6343318784573, 2021.0462729298506]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001371", "node_attrs": {"div": 36, "num_date": {"value": 2020.9906263402788, "confidence": [2020.7131528162843, 2021.0515982922352]}}, "branch_attrs": {"mutations": {"nuc": ["T29858A"]}}, "children": [{"name": "NODE_0001390", "node_attrs": {"div": 37, "num_date": {"value": 2021.0165657801374, "confidence": [2020.7458367017912, 2021.1844485402546]}}, "branch_attrs": {"mutations": {"nuc": ["C23380T"]}}, "children": [{"name": "BRA/GO-NXBS557GENOV70972649811/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_x": {"value": -27.29805654619064}, "umap_x": {"value": 3.8715103}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.9811263}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.92027769260798}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.06327977493678}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 44.50797788631226}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -0.7373099562154999}, "mds3": {"value": -19.23811450404364}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -6.299825618625259}}, "branch_attrs": {"mutations": {"nuc": ["G1268A", "G1738T", "A21040G", "T25773C", "G28085T", "A28855G", "G29033T"]}}}, {"name": "NODE_0001391", "node_attrs": {"div": 38, "num_date": {"value": 2021.1256498802284, "confidence": [2020.8003812973066, 2021.1958478615538]}}, "branch_attrs": {"mutations": {"nuc": ["G9105A"]}}, "children": [{"name": "BRA/SP-NVBS3028GENOV827805403641/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_x": {"value": -27.151362668679383}, "umap_x": {"value": 3.8114312}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.084227}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.571826827880223}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.24071843649142}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 47.80020792120635}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.944932837532678}, "mds3": {"value": -17.427913355594427}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.813067818548001}}, "branch_attrs": {"mutations": {"nuc": ["T1516C", "T3556C", "C7688T", "G9130T", "C13426T", "G23587T", "C25904T", "C29171T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}, {"name": "BRA/SP-NVBS1364GENOV827660035759/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_x": {"value": -26.88179721799588}, "umap_x": {"value": 3.732181}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.188143}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.573763531079419}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.088069997868454}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 51.85526613909289}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 5.040630295772737}, "mds3": {"value": -18.57678126681377}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.803662376171822}}, "branch_attrs": {"mutations": {"nuc": ["C6541T", "A7032G", "A8723G", "A9162G", "T22485C", "T23084C", "C24023T", "G24095T", "C25688A", "A26449G", "G27463T", "C28849T"], "S": ["V308A", "Y508H", "A845S"]}, "labels": {"aa": "S: V308A, Y508H, A845S"}}}]}]}, {"name": "NODE_0001382", "node_attrs": {"div": 37, "num_date": {"value": 2021.0153373408289, "confidence": [2020.7507248530776, 2021.1137561408757]}}, "branch_attrs": {"mutations": {"nuc": ["G25641T"]}}, "children": [{"name": "Argentina/UW21042743996/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.3191780821917, "confidence": [2021.3191780821917, 2021.3191780821917]}, "tsne_x": {"value": -27.11869769293855}, "umap_x": {"value": 3.73629}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.174999}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.03406474290166}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.801394619326237}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 49.35214433848401}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Argentina"}, "mds2": {"value": 3.526427865965565}, "mds3": {"value": -15.084713046357892}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.50479316336679}}, "branch_attrs": {"mutations": {"nuc": ["C1327T", "C1912T", "A2550G", "C5724T", "C8683T", "G8861T", "G12911A", "C20930T", "G25855T", "C27329T", "C28789T"]}}}, {"name": "NODE_0001383", "node_attrs": {"div": 39, "num_date": {"value": 2021.1257528939998, "confidence": [2020.8911269775022, 2021.1775930045967]}}, "branch_attrs": {"mutations": {"nuc": ["T3828C", "T14408C"]}}, "children": [{"name": "BRA/GO-DNAGYN-218/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.2835616438356, "confidence": [2021.2835616438356, 2021.2835616438356]}, "tsne_x": {"value": -27.41322296904372}, "umap_x": {"value": 3.9869125}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.5968075}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.744350402850748}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.868572418770205}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 41.94653691060106}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Goi\u00e1s"}, "mds2": {"value": -2.951713737941786}, "mds3": {"value": -18.400037528124628}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -10.302973688525306}}, "branch_attrs": {"mutations": {"nuc": ["C6099G", "C17678T", "C17977T", "G20134T", "C23707T"]}}}, {"name": "BRA/GO-DNAGYN-221/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.272602739726, "confidence": [2021.272602739726, 2021.272602739726]}, "tsne_x": {"value": -27.6158460736808}, "umap_x": {"value": 4.0738435}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.391056}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.0253288143895}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.87172814922095}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.09729158090601}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Goi\u00e1s"}, "mds2": {"value": -0.1759801316635262}, "mds3": {"value": -18.76963888802527}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.164322122099009}}, "branch_attrs": {"mutations": {"nuc": ["G8371T", "A17666G", "C20451T", "C27294T", "A29858T"]}}}]}]}, {"name": "NODE_0001375", "node_attrs": {"div": 37, "num_date": {"value": 2021.0166757337847, "confidence": [2020.769939213041, 2021.0703209370956]}}, "branch_attrs": {"mutations": {"nuc": ["C3117T"]}}, "children": [{"name": "BRA/RJ-NXBS711GENOV890119795702/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_x": {"value": -28.007002404714367}, "umap_x": {"value": 3.7478828}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.16073}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.198803520167545}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.854347237285614}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 50.77737962034306}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 8.957948902210013}, "mds3": {"value": -17.47806124060755}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -6.302192253101757}}, "branch_attrs": {"mutations": {"nuc": ["G1361A", "G7360T", "C9319A", "C10594T", "C14178T", "C16611T", "G16945T", "C23520T", "T23986C", "C25380T", "A25381C", "G25767T", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-"], "S": ["A653V", "T1273I"]}, "labels": {"aa": "S: A653V, T1273I"}}}, {"name": "NODE_0001376", "node_attrs": {"div": 38, "num_date": {"value": 2021.0585429507948, "confidence": [2021.0007362794502, 2021.0753424657535]}}, "branch_attrs": {"mutations": {"nuc": ["A18945G", "A22124-", "A22125-", "T22126-", "C22127-", "T22128-", "T22129-"], "S": ["N188-", "L189-"]}, "labels": {"aa": "S: N188-, L189-"}}, "children": [{"name": "TWN/CGMH-CGU-53/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.0753424657535, "confidence": [2021.0753424657535, 2021.0753424657535]}, "tsne_x": {"value": -27.69894671971068}, "umap_x": {"value": 4.130178}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2508435}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.763207408933669}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.16216604264002}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 37.95650266394161}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Taiwan"}, "mds2": {"value": 1.3988918936486487}, "mds3": {"value": -20.08878446926596}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -17.958839609873344}}, "branch_attrs": {"mutations": {"nuc": ["G20238A"]}}}, {"name": "TWN/CGMH-CGU-54/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.0753424657535, "confidence": [2021.0753424657535, 2021.0753424657535]}, "tsne_x": {"value": -27.684209412486243}, "umap_x": {"value": 4.10525}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2615666}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.771675610979399}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.169183961055383}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 36.55899472405215}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Taiwan"}, "mds2": {"value": 1.050794398658744}, "mds3": {"value": -20.61948882614266}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -18.5394195704279}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001378", "node_attrs": {"div": 37, "num_date": {"value": 2021.0175789113025, "confidence": [2020.778699868433, 2021.123521470146]}}, "branch_attrs": {"mutations": {"nuc": ["C8802T"]}}, "children": [{"name": "PRY/202102909_58641/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_x": {"value": -27.31905785923669}, "umap_x": {"value": 3.8610172}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.013464}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.603715896007221}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.8845966017056}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 46.518027759071856}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Paraguay"}, "mds2": {"value": 5.111064935749692}, "mds3": {"value": -15.108805142221092}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -12.415196966843787}}, "branch_attrs": {"mutations": {"nuc": ["G2528A", "C4794T", "G24416A", "C25469T", "G25793T", "G27281T", "C27527T", "G28077T"], "S": ["V952I"]}, "labels": {"aa": "S: V952I"}}}, {"name": "NODE_0001379", "node_attrs": {"div": 38, "num_date": {"value": 2021.1259641007296, "confidence": [2021.0025098566625, 2021.167157275198]}}, "branch_attrs": {"mutations": {"nuc": ["C6428T"]}}, "children": [{"name": "COL/SEC-0351M/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.1876712328767, "confidence": [2021.1876712328767, 2021.1876712328767]}, "tsne_x": {"value": -27.68153006188891}, "umap_x": {"value": 4.138269}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.1979246}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 43.495926737984405}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.097034908251104}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 36.18944098042549}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Colombia"}, "mds2": {"value": 4.631160740032104}, "mds3": {"value": -21.040305074120425}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 8.262058893628044}}, "branch_attrs": {"mutations": {"nuc": ["A20055G", "C28849T"]}}}, {"name": "NODE_0001699", "node_attrs": {"div": 38, "num_date": {"value": 2021.1435468181335, "confidence": [2021.0138642476436, 2021.2111758634494]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/SEC-0391A/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_x": {"value": -27.64350474602791}, "umap_x": {"value": 4.039868}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.401998}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 56.78079451530581}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.016992160013716}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": 40.005722098813365}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Colombia"}, "mds2": {"value": 7.978524506852563}, "mds3": {"value": -17.065651039426704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 9.853289924065992}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "G2965C", "C3244T", "C22571T"], "S": ["P337S"]}, "labels": {"aa": "S: P337S"}}}, {"name": "COL/SEC-0414X/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2835616438356, "confidence": [2021.2835616438356, 2021.2835616438356]}, "tsne_x": {"value": -27.684340337602155}, "umap_x": {"value": 4.106501}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.1686664}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 57.55102201634104}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.111043370802744}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": 35.043308151735715}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Colombia"}, "mds2": {"value": 4.253797124629983}, "mds3": {"value": -19.20824507678196}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 9.79005386513166}}, "branch_attrs": {"mutations": {"nuc": ["C28312T"]}}}]}]}]}, {"name": "NODE_0001700", "node_attrs": {"div": 36, "num_date": {"value": 2021.0019152435923, "confidence": [2020.7529308876422, 2021.0561643835617]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UW21012197622/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.0561643835617, "confidence": [2021.0561643835617, 2021.0561643835617]}, "tsne_x": {"value": -27.6812836681939}, "umap_x": {"value": 4.1163154}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.209709}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.03521995429668}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.176785911868256}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 36.010465470803446}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "USA"}, "mds2": {"value": 2.009212191668511}, "mds3": {"value": -17.26318036141525}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.502416331492025}}, "branch_attrs": {"mutations": {"nuc": ["C16260T", "A28858T"]}}}, {"name": "NODE_0001701", "node_attrs": {"div": 36, "num_date": {"value": 2021.0346769397238, "confidence": [2020.708447531372, 2021.2471457598183]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001388", "node_attrs": {"div": 39, "num_date": {"value": 2021.1841475530969, "confidence": [2020.8825997308547, 2021.301230601463]}}, "branch_attrs": {"mutations": {"nuc": ["C1528T", "A12162G", "G17562T"]}}, "children": [{"name": "BRA/SP-NVBS1220GENOV827692895697/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.4397260273972, "confidence": [2021.4397260273972, 2021.4397260273972]}, "tsne_x": {"value": -27.48332307928712}, "umap_x": {"value": 3.7293077}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.179228}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.573970935090759}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.946150567416812}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 52.5082148620949}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 1.3368399339978196}, "mds3": {"value": -18.11696564070624}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.808903276587978}}, "branch_attrs": {"mutations": {"nuc": ["G701T", "C3695T", "G4148T", "C10537T", "C12933T", "A15945T", "C21622T", "T21664C", "G24368T", "C25282T", "G26787A"], "S": ["D936Y"]}, "labels": {"aa": "S: D936Y"}}}, {"name": "BRA/SP-NVBS1204GENOV827651098718/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4150684931508, "confidence": [2021.4150684931508, 2021.4150684931508]}, "tsne_x": {"value": -27.53321685126978}, "umap_x": {"value": 3.9010005}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.8708463}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.152410146229507}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.45330771855304}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 43.37603947293453}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.2222718519871469}, "mds3": {"value": -19.12305275509136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -7.200803254791744}}, "branch_attrs": {"mutations": {"nuc": ["A3069G", "C8311T", "T24721C", "G28380T"]}}}]}, {"name": "NODE_0001703", "node_attrs": {"div": 36, "num_date": {"value": 2021.126293066035, "confidence": [2020.9009720832212, 2021.2552932303552]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001704", "node_attrs": {"div": 36, "num_date": {"value": 2021.1429067337172, "confidence": [2020.9077712662001, 2021.2691031863744]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-CDC-IBX882292684641/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4205479452055, "confidence": [2021.4205479452055, 2021.4205479452055]}, "tsne_x": {"value": -27.913258037775183}, "umap_x": {"value": 4.11524}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.215349}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 14.95947089511435}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.3176606520481}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 31.989257178523868}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Minnesota"}, "mds2": {"value": -5.635797228329092}, "mds3": {"value": -20.342046078870865}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.97179102561669}}, "branch_attrs": {"mutations": {"nuc": ["C7594T", "A10983G", "C12043T", "G18782T", "T20376A", "T22132G", "C25658T"], "S": ["S190R"]}, "labels": {"aa": "S: S190R"}}}, {"name": "BRA/PA-NVBS1387GENOV45949215412/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.3958904109588, "confidence": [2021.3958904109588, 2021.3958904109588]}, "tsne_x": {"value": -27.54338012244706}, "umap_x": {"value": 3.9949207}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.647039}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.576141477362719}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.042712910316377}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 41.35722330644826}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.817839201551922}, "mds3": {"value": -19.91072012540016}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.808240456718922}}, "branch_attrs": {"mutations": {"nuc": ["G3955A", "C6433T", "T9508C", "C15240T", "C27393T", "G29374A"]}}}]}, {"name": "NODE_0001705", "node_attrs": {"div": 36, "num_date": {"value": 2021.1427950130424, "confidence": [2020.909207727746, 2021.2658396969762]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NXBS184GENOV827553964401/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_x": {"value": -27.549655069907946}, "umap_x": {"value": 3.9014912}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.8094764}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.7871207839501855}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.93603239672707}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 42.76280422126644}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 3.804325181028173}, "mds3": {"value": -19.037551659824462}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -4.476186454920086}}, "branch_attrs": {"mutations": {"nuc": ["A1982G", "C2106T", "G3304T", "C9712T", "C16995T", "G25537A", "G26834T"]}}}, {"name": "NODE_0001706", "node_attrs": {"div": 36, "num_date": {"value": 2021.1856983528965, "confidence": [2020.9152249426036, 2021.3505921881083]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NXBS1854GENOV827658812003/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4205479452055, "confidence": [2021.4205479452055, 2021.4205479452055]}, "tsne_x": {"value": -27.647994564330027}, "umap_x": {"value": 4.01413}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.471853}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.873183816240121}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.167053529470078}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 39.671853775469295}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 1.0163042376005618}, "mds3": {"value": -20.819099668779103}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.897385231753701}}, "branch_attrs": {"mutations": {"nuc": ["G4718A", "C7471T", "A11934G", "A21611G", "A28566G"], "S": ["N17D"]}, "labels": {"aa": "S: N17D"}}}, {"name": "NODE_0001708", "node_attrs": {"div": 36, "num_date": {"value": 2021.242327062463, "confidence": [2020.9133408012804, 2021.3506334161707]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS3052GENOV130638681675/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5109589041097, "confidence": [2021.5109589041097, 2021.5109589041097]}, "tsne_x": {"value": -27.58793148590167}, "umap_x": {"value": 4.0046287}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.5234056}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.140958406085499}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.213632948736846}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.287717688533405}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 2.957933390608185}, "mds3": {"value": -20.703509778643543}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -7.159669035537495}}, "branch_attrs": {"mutations": {"nuc": ["A4420G", "C7819T", "G19101T", "T20684C", "T25729C", "C29837T"]}}}, {"name": "BRA/GO-NVBS1178GENOV700800032996/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_x": {"value": -27.65169232759412}, "umap_x": {"value": 4.0272713}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.461354}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.457284970044552}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.132018304182523}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.05282426740377}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -0.0957306458098017}, "mds3": {"value": -20.098531180274108}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.485872415104657}}, "branch_attrs": {"mutations": {"nuc": ["C6258T", "C15026T", "C27219T", "G27758T", "C28045T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0001709", "node_attrs": {"div": 35, "num_date": {"value": 2020.9928988479712, "confidence": [2020.9078788586721, 2021.1614277580202]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001429", "node_attrs": {"div": 36, "num_date": {"value": 2021.1461298919555, "confidence": [2020.9486171812189, 2021.3073496073978]}}, "branch_attrs": {"mutations": {"nuc": ["T23599G"], "S": ["N679K"]}, "labels": {"aa": "S: N679K"}}, "children": [{"name": "NODE_0001430", "node_attrs": {"div": 39, "num_date": {"value": 2021.4119522471774, "confidence": [2021.2047138560154, 2021.454996397273]}}, "branch_attrs": {"mutations": {"nuc": ["G26653A", "G29212A", "C29627T"]}}, "children": [{"name": "BRA/21890239MCA/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_x": {"value": -27.81220390568921}, "umap_x": {"value": 3.9633384}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.729183}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.565454891586096}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.855107022401622}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 41.7063824503895}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -3.5183586944080503}, "mds3": {"value": -20.96916709482869}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -4.713695548096083}}, "branch_attrs": {"mutations": {"nuc": ["C1190T", "G2286T", "T15729A"]}}}, {"name": "BRA/ILMD2100545/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6123287671232, "confidence": [2021.6123287671232, 2021.6123287671232]}, "tsne_x": {"value": -27.84650832561504}, "umap_x": {"value": 3.8679204}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.037892}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.467787994759689}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.721941693889136}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 43.05084520969162}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -2.95678136465919}, "mds3": {"value": -22.95100461286511}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.669857182395796}}, "branch_attrs": {"mutations": {"nuc": ["C1489T", "C4321T", "C14323T", "C27393T", "C27737T"]}}}]}, {"name": "NODE_0001431", "node_attrs": {"div": 40, "num_date": {"value": 2021.3543117595812, "confidence": [2021.2456447376223, 2021.4836473285397]}}, "branch_attrs": {"mutations": {"nuc": ["T997C", "C2623T", "C5866T", "C14491T"]}}, "children": [{"name": "BRA/AP-NVBS9875GENOV70987754784/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.8616438356164, "confidence": [2021.8616438356164, 2021.8616438356164]}, "tsne_x": {"value": -28.22968841347281}, "umap_x": {"value": 3.6959577}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.230021}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.872856580408731}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.459849435128303}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 53.59398143705554}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -3.3917489157756355}, "mds3": {"value": -14.25076194152377}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -6.229274118867146}}, "branch_attrs": {"mutations": {"nuc": ["G2755T", "A3546-", "T3547-", "G3548-", "G4720T", "C8240T", "A10323G", "A11782G", "T22917G", "C25509T", "G25563C", "C26456G", "T28952C"], "S": ["L452R"]}, "labels": {"aa": "S: L452R"}}}, {"name": "NODE_0001432", "node_attrs": {"div": 41, "num_date": {"value": 2021.4149905132313, "confidence": [2021.3619229737112, 2021.4938019568235]}}, "branch_attrs": {"mutations": {"nuc": ["A3523G"]}}, "children": [{"name": "BRA/21892091JSX/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4972602739726, "confidence": [2021.4972602739726, 2021.4972602739726]}, "tsne_x": {"value": -27.941819603390886}, "umap_x": {"value": 3.9469564}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.836609}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.1610576303335405}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.758014110093455}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.99426600371755}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -4.075681032759452}, "mds3": {"value": -23.739726321394222}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -7.158863288763511}}, "branch_attrs": {"mutations": {"nuc": ["C23399G", "C29546T"], "S": ["Q613E"]}, "labels": {"aa": "S: Q613E"}}}, {"name": "NODE_0001714", "node_attrs": {"div": 41, "num_date": {"value": 2021.4558014367306, "confidence": [2021.3713802926306, 2021.5]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/21892049CAS/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5, "confidence": [2021.5, 2021.5]}, "tsne_x": {"value": -27.94255495992552}, "umap_x": {"value": 3.9120407}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.6915455}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.74834672074136}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.806830753506024}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.347777055173474}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -3.806933162793425}, "mds3": {"value": -22.827932835804408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.608913547181953}}, "branch_attrs": {"mutations": {"nuc": ["A10720G"]}}}, {"name": "NODE_0001716", "node_attrs": {"div": 41, "num_date": {"value": 2021.4800254830393, "confidence": [2021.372721509998, 2021.5334516709136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/ILMD2100607/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5520547945205, "confidence": [2021.5520547945205, 2021.5520547945205]}, "tsne_x": {"value": -27.98302375285113}, "umap_x": {"value": 3.835906}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.006098}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.705073148742127}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.706302668934336}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 43.669603467561416}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -4.2236812288513725}, "mds3": {"value": -21.87331684105328}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.440193121520161}}, "branch_attrs": {"mutations": {"nuc": ["C1426T", "C8480T", "C26625T"]}}}, {"name": "NODE_0001717", "node_attrs": {"div": 41, "num_date": {"value": 2021.508121583263, "confidence": [2021.374298467527, 2021.5604494364347]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/21895121EMX/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_x": {"value": -28.043319131387328}, "umap_x": {"value": 3.762194}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.145765}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.965733436251585}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.611456328054308}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 46.05052820735874}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -5.03260110064646}, "mds3": {"value": -21.92056519700992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 0.0283204574832586}}, "branch_attrs": {"mutations": {"nuc": ["T8191C", "C11674T", "C13536T", "G24124A", "G29688T"]}}}, {"name": "BRA/ILMD2100203/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7082191780821, "confidence": [2021.7082191780821, 2021.7082191780821]}, "tsne_x": {"value": -28.01765835256639}, "umap_x": {"value": 3.7943969}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.089154}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.565367829186498}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -9.677673583476189}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 44.74443292198549}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -4.262746941819375}, "mds3": {"value": -22.28620014715921}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -4.713900770974865}}, "branch_attrs": {"mutations": {"nuc": ["T3628C", "C4686T", "C14937T", "C22747T"]}}}]}]}]}]}]}]}, {"name": "NODE_0001718", "node_attrs": {"div": 35, "num_date": {"value": 2021.0304447600738, "confidence": [2020.9198082968596, 2021.1663439108186]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/BR-MG-UW21031886949/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_x": {"value": -27.68694372063936}, "umap_x": {"value": 4.128094}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.211796}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.017105001541688}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.181863679026945}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 36.9453720261106}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 2.329085905599252}, "mds3": {"value": -17.674390958128104}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.50121774520199}}, "branch_attrs": {"mutations": {"nuc": ["A3534G", "C16178T", "A21308G"]}}}, {"name": "NODE_0001719", "node_attrs": {"div": 35, "num_date": {"value": 2021.0696912412807, "confidence": [2020.9190349881474, 2021.1603535882598]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001393", "node_attrs": {"div": 36, "num_date": {"value": 2021.125338619413, "confidence": [2021.019481348334, 2021.186631827597]}}, "branch_attrs": {"mutations": {"nuc": ["C16887T"]}}, "children": [{"name": "NODE_0001397", "node_attrs": {"div": 37, "num_date": {"value": 2021.1843995696004, "confidence": [2021.096281073343, 2021.2150684931507]}}, "branch_attrs": {"mutations": {"nuc": ["C28093T"]}}, "children": [{"name": "PRY/202102935_61966/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2150684931507, "confidence": [2021.2150684931507, 2021.2150684931507]}, "tsne_x": {"value": -27.660835445391907}, "umap_x": {"value": 4.115403}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2267103}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.078196554385285}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.201348861397348}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 35.74699726888309}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Paraguay"}, "mds2": {"value": 0.336800154574793}, "mds3": {"value": -20.160296839286573}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 15.000828414918008}}, "branch_attrs": {"mutations": {"nuc": ["C6982T"]}}}, {"name": "NODE_0001722", "node_attrs": {"div": 37, "num_date": {"value": 2021.2008077210517, "confidence": [2021.0995561132977, 2021.2635627714994]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UW21053161315/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_x": {"value": -27.61939318186791}, "umap_x": {"value": 4.021638}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.458432}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.036214062018374}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.32526771981894}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 41.03779938421435}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "USA"}, "mds2": {"value": 1.9293700924261747}, "mds3": {"value": -17.275208481026294}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.502035769959694}}, "branch_attrs": {"mutations": {"nuc": ["C4582T", "C7471T", "T17091C", "T28176C"]}}}, {"name": "PRY/WOR12903A835_202103362_202103362_2-4740133/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_x": {"value": -27.54397769984269}, "umap_x": {"value": 4.10288}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2409945}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.376674736903753}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.492976812975964}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 37.971536542000415}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Paraguay"}, "mds2": {"value": 3.2544153003187413}, "mds3": {"value": -17.748199577715397}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 14.574776022655849}}, "branch_attrs": {"mutations": {"nuc": ["C5144T", "C5817T", "C12784T", "G14593A", "T17497C", "G22427A"], "S": ["V289I"]}, "labels": {"aa": "S: V289I"}}}]}]}, {"name": "NODE_0001723", "node_attrs": {"div": 36, "num_date": {"value": 2021.1271562673899, "confidence": [2021.0307744669474, 2021.1943948446922]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102915_59428/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_x": {"value": -27.664568964206307}, "umap_x": {"value": 4.028174}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.4187903}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.475432361078004}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.213575275419643}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 38.72042388967158}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Paraguay"}, "mds2": {"value": 2.034612969677557}, "mds3": {"value": -20.05240069649363}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 9.709583252505832}}, "branch_attrs": {"mutations": {"nuc": ["C1710T", "G28239T", "T28240C", "G28242C"]}}}, {"name": "NODE_0001726", "node_attrs": {"div": 36, "num_date": {"value": 2021.1438264309916, "confidence": [2021.0876059525235, 2021.306387065045]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/RI-CDCBI-RIDOH_02398/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.349315068493, "confidence": [2021.349315068493, 2021.349315068493]}, "tsne_x": {"value": -27.69356699696432}, "umap_x": {"value": 3.985425}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.523226}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.960685636606977}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.263229864350471}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.63999197853301}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Rhode Island"}, "mds2": {"value": 0.2547805320417667}, "mds3": {"value": -19.48059539876373}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -0.0282901435342777}}, "branch_attrs": {"mutations": {"nuc": ["C2947T", "G9086A", "G17122T", "C25515T", "G25563T"]}}}, {"name": "NODE_0001727", "node_attrs": {"div": 36, "num_date": {"value": 2021.1984915361377, "confidence": [2021.0690754577263, 2021.308827083925]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001728", "node_attrs": {"div": 36, "num_date": {"value": 2021.2420331128078, "confidence": [2021.069580936751, 2021.323473003908]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NXBS1877GENOV827666173516/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_x": {"value": -27.655681513866124}, "umap_x": {"value": 4.044327}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.387968}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.307766650918589}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.493715443368606}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 38.81754884506455}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -8.409586892604567}, "mds3": {"value": -18.119980225442365}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 11.383763603628127}}, "branch_attrs": {"mutations": {"nuc": ["G3259T", "C18377T", "T19104C", "C21077T", "G25494T", "C25587T", "A29824T"]}}}, {"name": "PRY/WOR12903A626_202103304_2-4710537/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.327397260274, "confidence": [2021.327397260274, 2021.327397260274]}, "tsne_x": {"value": -27.688033053377858}, "umap_x": {"value": 4.0983253}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2216625}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.762843947630602}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.176557788869475}, "country": {"value": "Paraguay"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 34.41212961274458}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Paraguay"}, "mds2": {"value": 1.683016095920664}, "mds3": {"value": -18.39162319444949}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 7.70103312276516}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001732", "node_attrs": {"div": 36, "num_date": {"value": 2021.239512316294, "confidence": [2021.0646080274385, 2021.311333725256]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RS-NVBS1123GENOV45367603907/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_x": {"value": -27.8480413779222}, "umap_x": {"value": 3.8408122}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.047184}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.275207846217273}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.594661846965629}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 45.12898549663504}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 5.339834148668016}, "mds3": {"value": -18.80632506390788}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -7.781440690358484}}, "branch_attrs": {"mutations": {"nuc": ["G174T", "T1623C", "G2531A", "G3307T", "T4705C", "C11095T", "G27441T", "C27610T"]}}}, {"name": "BRA/EPI_ISL_8890245/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6287671232876, "confidence": [2021.6287671232876, 2021.6287671232876]}, "tsne_x": {"value": -27.473068488818228}, "umap_x": {"value": 3.8618681}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.95966}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 30.275155194968487}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.540715114652016}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 42.897108621783616}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "S\u00e3o Paulo"}, "mds2": {"value": 9.380180908012024}, "mds3": {"value": -18.88579409613924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 14.151576222507282}}, "branch_attrs": {"mutations": {"nuc": ["C1471T", "C1616T", "T2359C", "C10456T", "A10990G", "G13240A", "G18525T", "G18951T"]}}}]}]}]}]}]}, {"name": "NODE_0001733", "node_attrs": {"div": 35, "num_date": {"value": 2021.0801950816658, "confidence": [2020.9153363824391, 2021.1577501126674]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001413", "node_attrs": {"div": 37, "num_date": {"value": 2021.199359111158, "confidence": [2021.1353617905659, 2021.2260903564986]}}, "branch_attrs": {"mutations": {"nuc": ["A2596G", "C18129T"]}}, "children": [{"name": "Argentina/UW21032675895/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.231506849315, "confidence": [2021.231506849315, 2021.231506849315]}, "tsne_x": {"value": -27.674364306268096}, "umap_x": {"value": 4.1349063}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2649016}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.03256896789608}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.174400282976713}, "country": {"value": "Argentina"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 37.45634771306745}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Argentina"}, "mds2": {"value": 2.386535285862096}, "mds3": {"value": -16.884519793976597}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.49981302537332}}, "branch_attrs": {"mutations": {"nuc": ["A21137G"]}}}, {"name": "Chile/CL-RM-UW21040813653/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2671232876712, "confidence": [2021.2671232876712, 2021.2671232876712]}, "tsne_x": {"value": -27.68368976232113}, "umap_x": {"value": 4.181761}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.1168475}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -9.02061015406217}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.172004857505382}, "country": {"value": "Chile"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 35.60439819063031}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Chile"}, "mds2": {"value": 1.573999393636241}, "mds3": {"value": -19.376899408571084}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.5012813187988}}, "branch_attrs": {"mutations": {"nuc": ["C27673T"]}}}]}, {"name": "NODE_0001735", "node_attrs": {"div": 35, "num_date": {"value": 2021.0956974507565, "confidence": [2020.9177501138252, 2021.1622340181505]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001736", "node_attrs": {"div": 35, "num_date": {"value": 2021.1255045724088, "confidence": [2020.9149434381525, 2021.1686174622753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PE-NVBS851GENOV827565140510/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.3657534246574, "confidence": [2021.3657534246574, 2021.3657534246574]}, "tsne_x": {"value": -28.1383357141822}, "umap_x": {"value": 3.7658587}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.135244}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.422005616674258}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.5979783134455}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 48.11090263422326}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 7.696667282029379}, "mds3": {"value": -17.630608934898564}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -6.8084786953584935}}, "branch_attrs": {"mutations": {"nuc": ["T886C", "C2395T", "A11035G", "A12490G", "A12555G", "G16718A", "A20760G", "C24442T", "G26143T", "C26527T", "G28936T"]}}}, {"name": "BRA/PR-HF355/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2698630136986, "confidence": [2021.2698630136986, 2021.2698630136986]}, "tsne_x": {"value": -27.682303174890585}, "umap_x": {"value": 4.108304}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.251335}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.645221651968115}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.153934477866772}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 37.32356654861075}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Paran\u00e1"}, "mds2": {"value": 2.3254269836851207}, "mds3": {"value": -19.78892108154686}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 8.260133693463231}}, "branch_attrs": {"mutations": {"nuc": ["C5832T", "T12883C", "G19525T", "G23545T"], "S": ["E661D"]}, "labels": {"aa": "S: E661D"}}}]}, {"name": "NODE_0001737", "node_attrs": {"div": 35, "num_date": {"value": 2021.1238614238152, "confidence": [2020.917630603855, 2021.2434980390487]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PR-HF347/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2698630136986, "confidence": [2021.2698630136986, 2021.2698630136986]}, "tsne_x": {"value": -27.690259764146344}, "umap_x": {"value": 4.1062245}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2450514}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.754512169499648}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.155054017772974}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 35.62884316287652}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Paran\u00e1"}, "mds2": {"value": 1.4389775146366837}, "mds3": {"value": -18.6676158054075}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 8.264462898408574}}, "branch_attrs": {"mutations": {"nuc": ["C20825T", "C28000T"]}}}, {"name": "NODE_0001738", "node_attrs": {"div": 35, "num_date": {"value": 2021.1432640609269, "confidence": [2020.9178138672862, 2021.2441786970223]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SE-NXBS2409GENOV45615161517/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4342465753425, "confidence": [2021.4342465753425, 2021.4342465753425]}, "tsne_x": {"value": -27.79036203572788}, "umap_x": {"value": 4.0674143}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.386678}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.880720102053028}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.132319914472191}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 39.28190460352316}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -0.5981265503740215}, "mds3": {"value": -20.71248090373025}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -6.261504636296757}}, "branch_attrs": {"mutations": {"nuc": ["C5259T", "T6082A", "A6316G", "C24130T", "G27708A"]}}}, {"name": "NODE_0001739", "node_attrs": {"div": 35, "num_date": {"value": 2021.1490068136745, "confidence": [2020.9200203120079, 2021.247679059188]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NXBS276GENOV827528616854/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_x": {"value": -27.97764731114335}, "umap_x": {"value": 3.9293723}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.774021}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.9097580197434}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.169117041809912}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 42.56767074425252}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 5.207234989773827}, "mds3": {"value": -19.26172476218671}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -6.254068685488619}}, "branch_attrs": {"mutations": {"nuc": ["C888T", "C6113T", "C7267T", "A15082G", "C15738T", "T19003C", "T27685C"]}}}, {"name": "NODE_0001740", "node_attrs": {"div": 35, "num_date": {"value": 2021.1683855891445, "confidence": [2020.9212392692687, 2021.2474121932655]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/DF-NXBS166GENOV827512423505/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.3301369863013, "confidence": [2021.3301369863013, 2021.3301369863013]}, "tsne_x": {"value": -27.69651262272285}, "umap_x": {"value": 4.086153}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.3491726}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.705977586696187}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.143932587988935}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 38.93831562034609}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 1.2359999555855925}, "mds3": {"value": -19.279917327683293}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.460401578090216}}, "branch_attrs": {"mutations": {"nuc": ["A5943G", "T7292C", "C9042T", "G13651A"]}}}, {"name": "NODE_0001741", "node_attrs": {"div": 35, "num_date": {"value": 2021.1841451286905, "confidence": [2020.9210867221539, 2021.2506252088767]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NXBS189GENOV827526747383/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_x": {"value": -27.70617899010716}, "umap_x": {"value": 4.1096444}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.2299027}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 57.75379016027508}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.159294578134698}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": 34.249130385191926}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": -5.8068500854341485}, "mds3": {"value": -18.281590915023216}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 5.034534594283447}}, "branch_attrs": {"mutations": {"nuc": ["C2340T", "C5031T", "G6710T", "T10192C", "G25690T"]}}}, {"name": "NODE_0001742", "node_attrs": {"div": 35, "num_date": {"value": 2021.2008955903389, "confidence": [2020.92082893988, 2021.2572714454645]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NXBS1618GENOV827669162388/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.4260273972602, "confidence": [2021.4260273972602, 2021.4260273972602]}, "tsne_x": {"value": -27.854284788143417}, "umap_x": {"value": 3.8528557}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 8.033385}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.985095115376012}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.572079158967265}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 43.33856339995669}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 6.545699532443916}, "mds3": {"value": -21.365922455816523}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -3.784082125270923}}, "branch_attrs": {"mutations": {"nuc": ["C13335T", "G14712A", "C18788T", "C19185T", "G23120T", "T24214C", "G25049T", "T27701C", "G29757A"], "S": ["A520S", "D1163Y"]}, "labels": {"aa": "S: A520S, D1163Y"}}}, {"name": "NODE_0001743", "node_attrs": {"div": 35, "num_date": {"value": 2021.2076259483433, "confidence": [2020.9214230633359, 2021.2713124956078]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/GO-NVBS1148GENOV700800025288/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_x": {"value": -27.73087633595664}, "umap_x": {"value": 4.0440254}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.3648143}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.550972120978158}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.139255891933752}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 39.74633835175558}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 1.875860602967287}, "mds3": {"value": -17.966504446973186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -8.74412724260963}}, "branch_attrs": {"mutations": {"nuc": ["A2713G", "C4795T", "C6354T", "C7431T"]}}}, {"name": "NODE_0001744", "node_attrs": {"div": 35, "num_date": {"value": 2021.2410149346965, "confidence": [2020.9195521668264, 2021.279506452608]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NXBS700GENOV700906963583/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_x": {"value": -27.69603267165248}, "umap_x": {"value": 4.085909}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.308474}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.711043478924182}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.143861507186466}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 37.96446393990072}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Brazil"}, "mds2": {"value": 0.3596684921561233}, "mds3": {"value": -20.60568317996041}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": -5.483056585805339}}, "branch_attrs": {"mutations": {"nuc": ["C3411T", "T7310C", "C8860T", "C12194T"]}}}, {"name": "USA/WA-CDC-UW21052854593/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4041095890411, "confidence": [2021.4041095890411, 2021.4041095890411]}, "tsne_x": {"value": -27.43355900303808}, "umap_x": {"value": 3.954543}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "umap_y": {"value": 7.5580997}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.16844547921615}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "Nextclade_pango": {"value": "P.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "tsne_y": {"value": -10.188914569090617}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 40.008030873927694}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "division": {"value": "Washington"}, "mds2": {"value": 5.948211680403462}, "mds3": {"value": -20.260999149626866}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "mds_label_for_Nextstrain_clade": {"value": "5"}, "pca2": {"value": 28.827166023917027}}, "branch_attrs": {"mutations": {"nuc": ["C346T", "A4457G", "T5126C", "A8658G", "C20132T", "C21034T", "C28603T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001436", "node_attrs": {"div": 40, "num_date": {"value": 2021.0691792970508, "confidence": [2020.7828400079175, 2021.267812948048]}}, "branch_attrs": {"mutations": {"nuc": ["C21T", "C10029T", "C10449A", "A18163G", "G21987-", "G22578A", "C22674T", "T22679C", "C22686T", "G22813T", "T22882G", "G22992A", "C22995A", "A23013C", "A23040G", "A23055G", "T23075C", "T23599G", "C23854A", "G23948T", "A24424T", "T24469A", "C25000T", "C25584T", "C26270T", "C26577G", "G26709A", "A27259C", "C27807T", "A28271T", "C28311T", "A28363-", "G28364-", "A28365-", "A28366-", "C28367-", "G28368-", "C28369-", "A28370-"], "S": ["G142X", "G339D", "S371F", "S373P", "S375F", "K417N", "N440K", "S477N", "T478K", "E484A", "Q493R", "Q498R", "Y505H", "N679K", "N764K", "D796Y", "Q954H", "N969K", "*1274X"]}, "labels": {"aa": "S: G142X, G339D, S371F, S373P, S375F, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, Y505H, N679K, N764K, D796Y, Q954H, N969K, *1274X"}}, "children": [{"name": "NODE_0001437", "node_attrs": {"div": 65, "num_date": {"value": 2021.8364503835037, "confidence": [2021.6738319660135, 2021.9129501952723]}}, "branch_attrs": {"mutations": {"nuc": ["T670G", "G4184A", "C4321T", "C9344T", "A9424G", "C9534T", "C9866T", "C10198T", "G10447A", "C12880T", "C15714T", "C17410T", "C19955T", "A20055G", "C21618T", "A21634-", "C21635-", "C21636-", "C21637-", "C21638-", "C21639-", "T21640-", "G21641-", "-21987A", "T22200G", "A22688G", "G22775A", "A22786C", "C26060T", "C26858T", "G27382C", "A27383T", "T27384C", "A29510C"], "S": ["T19I", "L24X", "P25-", "P26-", "A27X", "X142D", "V213G", "T376A", "D405N", "R408S"]}, "labels": {"aa": "S: T19I, L24X, P25-, P26-, A27X, X142D, V213G, T376A, D405N, R408S"}}, "children": [{"name": "NZL/22MV0065/2022", "node_attrs": {"div": 68, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -4.7429991065705845}, "umap_x": {"value": 20.50973}, "Nextstrain_clade": {"value": "21L (Omicron)"}, "umap_y": {"value": -5.6512747}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.251830396992317}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": 39.50634758954759}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": 11.435625480747383}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -62.058987714281386}, "mds3": {"value": -19.244590666308603}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 34.063243438156}}, "branch_attrs": {"mutations": {"nuc": ["C2790T", "T21633-", "A28881T", "C28883G"]}}}, {"name": "OX314093", "node_attrs": {"div": 70, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -4.708073880919149}, "umap_x": {"value": 20.58227}, "Nextstrain_clade": {"value": "21L (Omicron)"}, "umap_y": {"value": -5.729893}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.376259338817864}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.2.9"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "tsne_y": {"value": 39.51393456384093}, "country": {"value": "Iceland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -37.063037543756}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Iceland"}, "mds2": {"value": -34.69653128157815}, "mds3": {"value": -49.88142327511514}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -0.1592391791846997}}, "branch_attrs": {"mutations": {"nuc": ["-11293T", "-11294T", "-11295T", "-11296G", "C17135T", "C22120T", "C22792T", "G22882T", "C25624T"], "S": ["K440N"]}, "labels": {"aa": "S: K440N"}}}]}, {"name": "NODE_0001438", "node_attrs": {"div": 55, "num_date": {"value": 2021.52990361112, "confidence": [2021.4799516652918, 2021.5685206798669]}}, "branch_attrs": {"mutations": {"nuc": ["A2832G", "T5386G", "G6513-", "T6514-", "T6515-", "G8393A", "T11285-", "T11286-", "G11287-", "-11294T", "-11295T", "-11296T", "A11537G", "T13195C", "C15240T", "C21762T", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "C21846T", "T21988-", "G21989-", "T21990-", "T21991-", "T21992-", "A21993-", "T21994-", "T21995-", "A22194-", "T22195-", "T22196-", "T22673C", "G22898A", "G23048A", "C23202A", "C24130A", "C24503T", "A26530G", "G28362-"], "S": ["A67V", "I68X", "H69-", "V70X", "T95I", "V143-", "Y144-", "Y145X", "N211X", "L212X", "F371L", "G446S", "G496S", "T547K", "N856K", "L981F"]}, "labels": {"aa": "S: A67V, I68X, H69-, V70X, T95I, V143-, Y144-, Y145X, N211X, L212X, F371L, G446S, G496S, T547K, N856K, L981F"}}, "children": [{"name": "NODE_0001502", "node_attrs": {"div": 56, "num_date": {"value": 2021.5618296532998, "confidence": [2021.5288211668153, 2021.5749313421052]}}, "branch_attrs": {"mutations": {"nuc": ["G22599A"], "S": ["R346K"]}, "labels": {"aa": "S: R346K"}}, "children": [{"name": "NODE_0001749", "node_attrs": {"div": 56, "num_date": {"value": 2021.758839531918, "confidence": [2021.5017770061086, 2021.8930199791305]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS11318/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_x": {"value": -2.5802069411153967}, "umap_x": {"value": 20.464293}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5327835}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.691835886612672}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.42066204985448}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.903184846437568}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -49.04138363541724}, "mds3": {"value": -38.29341612744828}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -4.094565829634479}}, "branch_attrs": {"mutations": {"nuc": ["C13862T", "A16064G"]}}}, {"name": "NODE_0001503", "node_attrs": {"div": 57, "num_date": {"value": 2021.8912647463987, "confidence": [2021.761612742024, 2021.9542915846566]}}, "branch_attrs": {"mutations": {"nuc": ["G16744A"]}}, "children": [{"name": "KEN/SS11679/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9794520547946, "confidence": [2021.9794520547946, 2021.9794520547946]}, "tsne_x": {"value": -3.207900390802576}, "umap_x": {"value": 20.706764}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.862086}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.270969013528505}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 39.96774766077396}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.91625734892606}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -45.90086971800553}, "mds3": {"value": -36.62432334494447}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 2.731619626028277}}, "branch_attrs": {"mutations": {"nuc": ["T2839C"]}}}, {"name": "KEN/SS11367/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9575342465753, "confidence": [2021.9575342465753, 2021.9575342465753]}, "tsne_x": {"value": -3.023978554011399}, "umap_x": {"value": 20.4931}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.657875}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.866262427247224}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.10799782633486}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.47177832124742}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -48.48612103682876}, "mds3": {"value": -36.80838583815843}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -4.721353586117441}}, "branch_attrs": {"mutations": {"nuc": ["T22261C"]}}}, {"name": "NODE_0001751", "node_attrs": {"div": 57, "num_date": {"value": 2021.9525830291539, "confidence": [2021.7580752984577, 2021.9602739726026]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS11574/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9602739726026, "confidence": [2021.9602739726026, 2021.9602739726026]}, "tsne_x": {"value": -3.1945580280243098}, "umap_x": {"value": 20.652348}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4136333}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 37.20790266309202}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 39.9571672945893}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -9.61733703002939}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -43.72688906794773}, "mds3": {"value": -31.70724406386481}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 2.325354334433136}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001752", "node_attrs": {"div": 57, "num_date": {"value": 2021.9547300155896, "confidence": [2021.7686527817596, 2021.9630136986302]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS7435/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.479743529755615}, "umap_x": {"value": 20.491165}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.6535144}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.5670070286229134}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 39.96344256686317}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.305198946918082}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -48.19533486863328}, "mds3": {"value": -37.76585737367749}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.921229032349389}}, "branch_attrs": {"mutations": {"nuc": ["G6653A", "G27204C"]}}}, {"name": "KEN/SS10685/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9630136986302, "confidence": [2021.9630136986302, 2021.9630136986302]}, "tsne_x": {"value": -2.8222931505215816}, "umap_x": {"value": 20.428364}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.588705}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.5645989808825079}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.120631258374765}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.224749397421608}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -47.95513794501555}, "mds3": {"value": -37.07627583121031}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -0.5777412712760753}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001753", "node_attrs": {"div": 57, "num_date": {"value": 2021.953225270751, "confidence": [2021.8737413202878, 2021.9850859875125]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS5290/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.6638616772094568}, "umap_x": {"value": 20.669876}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.3824997}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.215549739857128}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.283595396244486}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.801125542054548}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -44.2786648559181}, "mds3": {"value": -34.26712904442608}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 8.981259031526852}}, "branch_attrs": {"mutations": {"nuc": ["C28185T"]}}}, {"name": "NODE_0001754", "node_attrs": {"div": 57, "num_date": {"value": 2021.9675906097582, "confidence": [2021.9328559807282, 2022.000582634654]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS8283/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.9563910862678187}, "umap_x": {"value": 20.57062}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.849576}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.21246332686896}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.0344823783845}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.501528925248104}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -46.90293168881331}, "mds3": {"value": -35.668766728167974}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 3.1217714107674923}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001755", "node_attrs": {"div": 57, "num_date": {"value": 2021.9971474563567, "confidence": [2021.9398294099499, 2022.0013698630137]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DJI/NAMRU3_A656_2022/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.816068232795514}, "umap_x": {"value": 20.422924}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.6614866}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.091286765761074}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.1176822980196}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.74970037839262}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Djibouti"}, "mds2": {"value": -47.77200927974166}, "mds3": {"value": -36.9650409061398}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 2.874252530704607}}, "branch_attrs": {"mutations": {}}}, {"name": "DJI/NAMRU3_A395_2022/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.855714253451389}, "umap_x": {"value": 20.531805}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.77634}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.091286765761074}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.07083705335239}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.362709925658292}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Djibouti"}, "mds2": {"value": -47.179879146812624}, "mds3": {"value": -35.99352158064728}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 2.874252530704607}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001756", "node_attrs": {"div": 57, "num_date": {"value": 2021.9396029857014, "confidence": [2021.8590787984638, 2021.9637510330394]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001757", "node_attrs": {"div": 57, "num_date": {"value": 2021.9540619260079, "confidence": [2021.9175045910633, 2021.996894624884]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS5266/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.633722941770065}, "umap_x": {"value": 20.681328}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4053025}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.9727480227207823}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.34510668809665}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.659015967316355}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -43.36074233680771}, "mds3": {"value": -33.483711074605885}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 8.313964142544686}}, "branch_attrs": {"mutations": {"nuc": ["T15009C"]}}}, {"name": "KEN/SS8010/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.8406336726137646}, "umap_x": {"value": 20.498022}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.692103}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.091286765761074}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.0851754498267}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.22036301209339}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -47.45892175927676}, "mds3": {"value": -36.5191125460624}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 2.874252530704607}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001758", "node_attrs": {"div": 57, "num_date": {"value": 2021.9527966117341, "confidence": [2021.8925926988488, 2021.9705358587564]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS11691/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.982191780822, "confidence": [2021.982191780822, 2021.982191780822]}, "tsne_x": {"value": -3.2694724136842823}, "umap_x": {"value": 20.707228}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.449313}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.2575376853187933}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 39.9163474688472}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.452063672189208}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -43.339345994202326}, "mds3": {"value": -34.20465535870356}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 3.2803402603152314}}, "branch_attrs": {"mutations": {"nuc": ["T23948G"], "S": ["Y796D"]}, "labels": {"aa": "S: Y796D"}}}, {"name": "NODE_0001759", "node_attrs": {"div": 57, "num_date": {"value": 2021.954655575421, "confidence": [2021.9274113574693, 2021.9854189891578]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DJI/NAMRU3_A636_2022/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.171586737180047}, "umap_x": {"value": 20.623459}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.54617}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.1117744717945737}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.11187965627492}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.504565469744684}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Djibouti"}, "mds2": {"value": -42.31333917241668}, "mds3": {"value": -30.905271238232807}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.723137965912827}}, "branch_attrs": {"mutations": {"nuc": ["A17704G"]}}}, {"name": "NODE_0001760", "node_attrs": {"div": 57, "num_date": {"value": 2021.9706484653677, "confidence": [2021.944666034255, 2021.9961968261389]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS5255/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.722313729351153}, "umap_x": {"value": 20.691135}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4535394}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.214910299401396}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.15334738132712}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.902758602869635}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -43.22116885482706}, "mds3": {"value": -33.20723891689716}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 8.975814758124518}}, "branch_attrs": {"mutations": {}}}, {"name": "KEN/SS8320/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.7143294190748146}, "umap_x": {"value": 20.436434}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5230646}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.212504710097358}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.35982491198679}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.780626884298854}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -48.86170531479949}, "mds3": {"value": -37.9857063636571}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 3.121778983505045}}, "branch_attrs": {"mutations": {"nuc": ["T5644C"]}}}]}]}]}]}]}]}, {"name": "NODE_0001518", "node_attrs": {"div": 57, "num_date": {"value": 2021.5849315068492, "confidence": [2021.5640437024085, 2021.5849315068492]}}, "branch_attrs": {"mutations": {"nuc": ["C2470T"]}}, "children": [{"name": "KAZ/17_10/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.5849315068492, "confidence": [2021.5849315068492, 2021.5849315068492]}, "tsne_x": {"value": -3.4426887315804944}, "umap_x": {"value": 20.686935}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.372026}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 17.09282026553897}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.11377726165431}, "country": {"value": "Kazakhstan"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -6.544648436740405}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kazakhstan"}, "mds2": {"value": -45.45732652015269}, "mds3": {"value": -33.398313186149366}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 26.20003192872949}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001762", "node_attrs": {"div": 57, "num_date": {"value": 2021.747710493496, "confidence": [2021.5997439321857, 2021.918308254369]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001763", "node_attrs": {"div": 57, "num_date": {"value": 2021.8331370643868, "confidence": [2021.6163602164527, 2021.9676639707536]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX795713", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.384612998749808}, "umap_x": {"value": 20.391163}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.694641}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.4564751213829417}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.54413058328929}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.14529478229564}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -36.180033630901576}, "mds3": {"value": -29.31843253323869}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 13.530991527471157}}, "branch_attrs": {"mutations": {"nuc": ["T18083C", "A19334G", "C26522T"]}}}, {"name": "NODE_0001764", "node_attrs": {"div": 57, "num_date": {"value": 2021.8534013943497, "confidence": [2021.6256952392596, 2021.9687087096613]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001519", "node_attrs": {"div": 58, "num_date": {"value": 2021.9929250496998, "confidence": [2021.918766789426, 2022.0012702587806]}}, "branch_attrs": {"mutations": {"nuc": ["C7926T"]}}, "children": [{"name": "USA/CO-CDC-LC0482423/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.8492091083769244}, "umap_x": {"value": 20.458893}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5687766}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.525702739300842}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1.18"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.44338701659326}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.37011779343637}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Colorado"}, "mds2": {"value": -49.1815515272062}, "mds3": {"value": -38.038810685724414}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.173422276155379}}, "branch_attrs": {"mutations": {}}}, {"name": "TWN/CGMH-CGU-130/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.850507663020004}, "umap_x": {"value": 20.469746}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.512637}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.602059202850454}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1.18"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.45583447960184}, "country": {"value": "Taiwan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.05565839371326}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Taiwan"}, "mds2": {"value": -49.48549225008354}, "mds3": {"value": -38.20408161093262}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -16.066218911591676}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001766", "node_attrs": {"div": 57, "num_date": {"value": 2021.952693804757, "confidence": [2021.6172177426085, 2021.9643042317562]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3795/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9931506849316, "confidence": [2021.9931506849316, 2021.9931506849316]}, "tsne_x": {"value": -3.57470443154336}, "umap_x": {"value": 20.71429}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4133587}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.224727029192215}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.16988759511472}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.432994189483036}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -42.718213867036205}, "mds3": {"value": -36.67788752719632}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 29.90906186897019}}, "branch_attrs": {"mutations": {"nuc": ["C29627T"]}}}, {"name": "NZL/21MV3678/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9712328767123, "confidence": [2021.9712328767123, 2021.9712328767123]}, "tsne_x": {"value": -2.873198467209691}, "umap_x": {"value": 20.506119}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.6462584}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.718470459579882}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.4101331988746}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.245196456684612}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -48.876351486961326}, "mds3": {"value": -37.0110979446173}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 16.93509537990467}}, "branch_attrs": {"mutations": {"nuc": ["C13694T"]}}}]}]}]}, {"name": "NODE_0001767", "node_attrs": {"div": 57, "num_date": {"value": 2021.767936040786, "confidence": [2021.6541417883823, 2021.9322065904478]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001768", "node_attrs": {"div": 57, "num_date": {"value": 2021.8423081149456, "confidence": [2021.7294463279977, 2021.968493150685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV626973", "node_attrs": {"div": 58, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_x": {"value": -2.719646345366939}, "umap_x": {"value": 20.750147}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.720916}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.2583849532463205}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.64253282143412}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.674180415062123}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -46.83943707098719}, "mds3": {"value": -35.75644536401058}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.145251802047772}}, "branch_attrs": {"mutations": {"nuc": ["A14107G", "A28254-"]}}}, {"name": "NODE_0001769", "node_attrs": {"div": 57, "num_date": {"value": 2021.8908624225064, "confidence": [2021.7478007809268, 2021.9703922924725]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-UW22010164772/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.3467453943578813}, "umap_x": {"value": 20.46007}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.6376004}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.86530980679182}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.4310163450637}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.982181428698857}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Washington"}, "mds2": {"value": -50.39560551394667}, "mds3": {"value": -35.57992418497563}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 30.04517374632994}}, "branch_attrs": {"mutations": {"nuc": ["C9319T", "C12880T", "-22194T"]}}}, {"name": "NODE_0001770", "node_attrs": {"div": 57, "num_date": {"value": 2021.9523173220257, "confidence": [2021.7488834039525, 2021.9759546954897]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BEN/697027/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9767123287672, "confidence": [2021.9767123287672, 2021.9767123287672]}, "tsne_x": {"value": -2.891618053752272}, "umap_x": {"value": 20.61048}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.554838}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.796933494295305}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.24272920027037}, "country": {"value": "Benin"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.952058383572586}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Benin"}, "mds2": {"value": -40.18814602951908}, "mds3": {"value": -33.185825557568144}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 14.938185728259612}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001524", "node_attrs": {"div": 58, "num_date": {"value": 2021.9737422534924, "confidence": [2021.9278770083881, 2021.995890410959]}}, "branch_attrs": {"mutations": {"nuc": ["C10560G"]}}, "children": [{"name": "Japan/SZ-NIG-Y212223/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_x": {"value": -3.0458732435939115}, "umap_x": {"value": 20.586052}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.7803383}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.331506714068558}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.294213210407925}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.858554642941495}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Shizuoka"}, "mds2": {"value": -48.1433092894622}, "mds3": {"value": -35.98934429445035}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -6.35262140955538}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/22CH0031/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.7688985655866}, "umap_x": {"value": 20.679474}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4669766}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 17.56728494755135}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.15233942532648}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -6.1595252579987685}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.50215919725411}, "mds3": {"value": -36.45240081713629}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 31.857094012683213}}, "branch_attrs": {"mutations": {"nuc": ["C18377T"]}}}]}]}]}]}, {"name": "NODE_0001772", "node_attrs": {"div": 57, "num_date": {"value": 2021.8331018691053, "confidence": [2021.6490987216218, 2021.9351432607084]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001534", "node_attrs": {"div": 58, "num_date": {"value": 2021.9538394625965, "confidence": [2021.7453539500034, 2021.9717118266494]}}, "branch_attrs": {"mutations": {"nuc": ["A14940G"]}}, "children": [{"name": "USA/CO-CDPHE-2102521720/2021", "node_attrs": {"div": 60, "num_date": {"value": 2021.9876712328767, "confidence": [2021.9876712328767, 2021.9876712328767]}, "tsne_x": {"value": -2.853492741334452}, "umap_x": {"value": 20.673746}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.162028}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.464834764467749}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.76311679233395}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.512515911642096}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "USA"}, "mds2": {"value": -46.50128585814975}, "mds3": {"value": -33.668862670172004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.656971945054479}}, "branch_attrs": {"mutations": {"nuc": ["A10323G", "A23588G"], "S": ["T676A"]}, "labels": {"aa": "S: T676A"}}}, {"name": "USA/NJ-PHEL-V22000851/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_x": {"value": -2.8745331327143395}, "umap_x": {"value": 20.42223}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5519056}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.958160371584633}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.435415153845554}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.556233935876012}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "USA"}, "mds2": {"value": -48.935096661434535}, "mds3": {"value": -37.80599775985489}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 0.294878500792151}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001774", "node_attrs": {"div": 57, "num_date": {"value": 2021.8361138308528, "confidence": [2021.6611678170605, 2021.9391928792052]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV581966", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.8229747123524445}, "umap_x": {"value": 20.67873}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.7237496}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.890779237448109}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.44217655357187}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.439410685148909}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -47.62766659629409}, "mds3": {"value": -35.64172018612149}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 4.654520140952691}}, "branch_attrs": {"mutations": {"nuc": ["C23029T"]}}}, {"name": "NODE_0001775", "node_attrs": {"div": 57, "num_date": {"value": 2021.8457701824332, "confidence": [2021.666630482657, 2021.9441853036446]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001776", "node_attrs": {"div": 57, "num_date": {"value": 2021.8531156121635, "confidence": [2021.6693006066687, 2021.9520547945206]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-DSHS-12770/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9520547945206, "confidence": [2021.9520547945206, 2021.9520547945206]}, "tsne_x": {"value": -2.8701329407813887}, "umap_x": {"value": 20.653925}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.9339023}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.932256429421347}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.584425117725054}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.642920742066272}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Texas"}, "mds2": {"value": -43.165476434565214}, "mds3": {"value": -39.0960723640021}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 33.41954236097911}}, "branch_attrs": {"mutations": {"nuc": ["G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "C1545T"]}}}, {"name": "NODE_0001777", "node_attrs": {"div": 57, "num_date": {"value": 2021.8987888695692, "confidence": [2021.6648658876754, 2021.9738311370243]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0064/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.107020547760176}, "umap_x": {"value": 20.653889}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.945827}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.731832531852768}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.53599964957328}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.199152478503445}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -43.43943420095562}, "mds3": {"value": -39.9952663362677}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.555768169212268}}, "branch_attrs": {"mutations": {"nuc": ["A3219T", "C26326T"]}}}, {"name": "NODE_0001522", "node_attrs": {"div": 59, "num_date": {"value": 2021.9678768294257, "confidence": [2021.9297910900248, 2021.9869326285957]}}, "branch_attrs": {"mutations": {"nuc": ["A10449C", "G26530A"]}}, "children": [{"name": "BHR/21342887663_S111_L001/2021", "node_attrs": {"div": 60, "num_date": {"value": 2021.9876712328767, "confidence": [2021.9876712328767, 2021.9876712328767]}, "tsne_x": {"value": -3.5936770389079187}, "umap_x": {"value": 20.357275}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.7178392}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.1160620931280692}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.32535106000565}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.08026364701792}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Bahrain"}, "mds2": {"value": -33.44994166419884}, "mds3": {"value": -24.63734158257391}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": -0.1489245742928289}}, "branch_attrs": {"mutations": {"nuc": ["C900T"]}}}, {"name": "BHR/21342887614_S105_L001/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9876712328767, "confidence": [2021.9876712328767, 2021.9876712328767]}, "tsne_x": {"value": -3.40902515204374}, "umap_x": {"value": 20.351105}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.712123}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 10.515840009420849}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.03772766187806}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.882824440088268}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Bahrain"}, "mds2": {"value": -29.81765612857617}, "mds3": {"value": -23.719977781434835}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": -1.442980787984474}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001779", "node_attrs": {"div": 57, "num_date": {"value": 2021.8912941982792, "confidence": [2021.6623414897779, 2021.9554258196517]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001780", "node_attrs": {"div": 57, "num_date": {"value": 2021.9542629656366, "confidence": [2021.8948828720188, 2021.982191780822]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX687387", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.726896812187339}, "umap_x": {"value": 20.747982}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.966376}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.176897347839554}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.64362799828424}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.880933221985588}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -45.74995835425682}, "mds3": {"value": -34.965112112712454}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 0.7018980307523953}}, "branch_attrs": {"mutations": {"nuc": ["C25703T", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-"]}}}, {"name": "HongKong/HKU-220213-287/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.982191780822, "confidence": [2021.982191780822, 2021.982191780822]}, "tsne_x": {"value": -2.7796655379250974}, "umap_x": {"value": 20.419556}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.552241}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.196810565760953}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.40102894640897}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.83956558178711}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -48.37734931371361}, "mds3": {"value": -37.50379483504527}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 3.492497943449093}}, "branch_attrs": {"mutations": {"nuc": ["A28254-"]}}}]}, {"name": "NODE_0001526", "node_attrs": {"div": 58, "num_date": {"value": 2021.9520377830618, "confidence": [2021.7582390278712, 2021.9571356159604]}}, "branch_attrs": {"mutations": {"nuc": ["C21595T"]}}, "children": [{"name": "VNM/HCMC_16137/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.246749635160192}, "umap_x": {"value": 20.62808}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.9133563}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.899733300371056}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.37455489793738}, "country": {"value": "Vietnam"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.969030066533323}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Vietnam"}, "mds2": {"value": -48.101578070652266}, "mds3": {"value": -35.29994253770221}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 15.407023952578772}}, "branch_attrs": {"mutations": {"nuc": ["C217T"]}}}, {"name": "HongKong/HKU-220213-224/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9575342465753, "confidence": [2021.9575342465753, 2021.9575342465753]}, "tsne_x": {"value": -2.928452773244689}, "umap_x": {"value": 20.431423}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.516347}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.821701827235545}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.614910813135296}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.004524565597729}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -49.81159616575994}, "mds3": {"value": -37.744437799929926}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 1.8517094344582288}}, "branch_attrs": {"mutations": {"nuc": ["C27509G"]}}}, {"name": "NODE_0001556", "node_attrs": {"div": 58, "num_date": {"value": 2021.954353538218, "confidence": [2021.9338696360844, 2021.9995231757594]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKU-220114-004/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.258798094603787}, "umap_x": {"value": 20.578451}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.759973}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.818090246023555}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.35726125266748}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.337238537047195}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -49.08130102679424}, "mds3": {"value": -35.71846517092284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 1.8518434538254205}}, "branch_attrs": {"mutations": {"nuc": ["A19950G"]}}}, {"name": "USA/WA-S16059/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.992170273343626}, "umap_x": {"value": 20.568167}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.72332}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.324958022528523}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.345393573491215}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.961722565991662}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Washington"}, "mds2": {"value": -48.22951992301446}, "mds3": {"value": -35.867821001355445}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -3.763914957335343}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001557", "node_attrs": {"div": 58, "num_date": {"value": 2021.9537978290018, "confidence": [2021.7612866049622, 2021.9801749734966]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2102968207/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.1433823967978896}, "umap_x": {"value": 20.346012}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.7421045}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.684354237872217}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.52780599005152}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.42529534059953}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "USA"}, "mds2": {"value": -35.98264016950598}, "mds3": {"value": -29.135610502839377}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 13.136526567389756}}, "branch_attrs": {"mutations": {"nuc": ["C23683T"]}}}, {"name": "NZL/22MV0038/2022", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.290791699243427}, "umap_x": {"value": 20.584938}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.937584}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.4553436059386256}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "tsne_y": {"value": 40.68966977527428}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.674085950076911}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -50.07744466292161}, "mds3": {"value": -30.216695980776585}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}, "pca2": {"value": 12.33006219025506}}, "branch_attrs": {"mutations": {"nuc": ["A28882G", "C28883G"]}}}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001782", "node_attrs": {"div": 55, "num_date": {"value": 2021.644941689693, "confidence": [2021.536473398398, 2021.8312329126745]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001455", "node_attrs": {"div": 56, "num_date": {"value": 2021.8366960033927, "confidence": [2021.649408725648, 2021.9409705957808]}}, "branch_attrs": {"mutations": {"nuc": ["T11422C"]}}, "children": [{"name": "BRA/ILMD2200090/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9739726027397, "confidence": [2021.9739726027397, 2021.9739726027397]}, "tsne_x": {"value": -2.133887057922408}, "umap_x": {"value": 20.6438}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.0313864}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.091270059591378}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 40.438501786373855}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.990118204310306}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Brazil"}, "mds2": {"value": -45.58226405370216}, "mds3": {"value": -34.265061694099124}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.798262130092617}}, "branch_attrs": {"mutations": {"nuc": ["A26896T", "T26897G", "G26898C"]}}}, {"name": "BRA/ILMD2200469/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.556140767778573}, "umap_x": {"value": 20.55851}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.695703}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.559105988145963}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.79306786090379}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.516213895728544}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Brazil"}, "mds2": {"value": -47.10872238133312}, "mds3": {"value": -36.965829899690696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -3.600941246446685}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001784", "node_attrs": {"div": 55, "num_date": {"value": 2021.679112622458, "confidence": [2021.563254313157, 2021.8415504174857]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001785", "node_attrs": {"div": 55, "num_date": {"value": 2021.7239822524577, "confidence": [2021.5718257071505, 2021.8692502440122]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001786", "node_attrs": {"div": 55, "num_date": {"value": 2021.7569436070762, "confidence": [2021.5779906387445, 2021.894458402952]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ISR/CVL-49814/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9, "confidence": [2021.9, 2021.9]}, "tsne_x": {"value": -2.5804281528480524}, "umap_x": {"value": 20.637384}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.7952833}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.2503875111942335}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.13"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.76966678868441}, "country": {"value": "Israel"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.679477415999251}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Israel"}, "mds2": {"value": -46.517140476577815}, "mds3": {"value": -36.66390999220979}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -15.98445472882302}}, "branch_attrs": {"mutations": {"nuc": ["G1957T"]}}}, {"name": "NODE_0001499", "node_attrs": {"div": 57, "num_date": {"value": 2021.889410323491, "confidence": [2021.7485590682845, 2021.984093344581]}}, "branch_attrs": {"mutations": {"nuc": ["C11950T", "C28472T"]}}, "children": [{"name": "NZL/22MV0063/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.3167302834353274}, "umap_x": {"value": 20.58125}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.189607}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.727263714000157}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.20383318115846}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.33630819947244}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.81884482212917}, "mds3": {"value": -39.06508104440196}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.554147679884093}}, "branch_attrs": {"mutations": {"nuc": ["A13692C", "T18732G", "A27379-", "T27380-", "T27381-", "G27382-"]}}}, {"name": "NODE_0001788", "node_attrs": {"div": 57, "num_date": {"value": 2021.9525382654258, "confidence": [2021.742355831037, 2021.9768017551842]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-FG-230296/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.5226738098875705}, "umap_x": {"value": 20.585752}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.7936625}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.8655096014648}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.33941365637437}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.40410723208876}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "California"}, "mds2": {"value": -48.55801997837997}, "mds3": {"value": -35.5933713251535}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -5.4664449562893065}}, "branch_attrs": {"mutations": {"nuc": ["T21477C"]}}}, {"name": "USA/B015923/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.182191737377304}, "umap_x": {"value": 20.548292}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.7870207}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.782447222603904}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.26527196490122}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.840786419653528}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Arkansas"}, "mds2": {"value": -47.10932474488759}, "mds3": {"value": -34.67888652586597}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -9.851207173933188}}, "branch_attrs": {"mutations": {"nuc": ["T15521A", "T25674C"]}}}]}]}]}, {"name": "NODE_0001789", "node_attrs": {"div": 55, "num_date": {"value": 2021.7552829611764, "confidence": [2021.57607097009, 2021.875133673374]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001446", "node_attrs": {"div": 56, "num_date": {"value": 2021.8364556778565, "confidence": [2021.6662184559077, 2021.9660018776126]}}, "branch_attrs": {"mutations": {"nuc": ["G5515T"]}}, "children": [{"name": "OV649885", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.308966909109664}, "umap_x": {"value": 20.649977}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.937674}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.25560075191072}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.42984470494475}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.981208283132272}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Hamburg"}, "mds2": {"value": -48.99728106545174}, "mds3": {"value": -31.53586033682194}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 19.147650604881704}}, "branch_attrs": {"mutations": {"nuc": ["G15451A", "C18526T", "-21765T"]}}}, {"name": "NODE_0001792", "node_attrs": {"div": 56, "num_date": {"value": 2021.8516839840952, "confidence": [2021.6702519379141, 2021.9739726027397]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH1006/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9739726027397, "confidence": [2021.9739726027397, 2021.9739726027397]}, "tsne_x": {"value": -2.903264739996612}, "umap_x": {"value": 20.680202}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.434519}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.634803980520791}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.543183399694726}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.486458828992204}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -40.76543323278116}, "mds3": {"value": -36.026005725906}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 30.98356011932784}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/CO-CDPHE-2102650995/2022", "node_attrs": {"div": 63, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.5405602565401333}, "umap_x": {"value": 20.444437}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5318856}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.898602135668744}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 38.849740916006986}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.68890065701902}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "USA"}, "mds2": {"value": -50.07424093000687}, "mds3": {"value": -39.29107948536528}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 19.72440842918673}}, "branch_attrs": {"mutations": {"nuc": ["C1059T", "T9429C", "C11224T", "G11609A", "G13374T", "T25000C", "C29750A"]}}}]}, {"name": "NODE_0001570", "node_attrs": {"div": 56, "num_date": {"value": 2021.9524901384934, "confidence": [2021.8761574135865, 2021.968493150685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NJ-CDC-ASC210636442/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_x": {"value": -2.6824119759595164}, "umap_x": {"value": 20.525814}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.8573823}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.3259170112444085}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.67808808350247}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.54986418691382}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Jersey"}, "mds2": {"value": -46.63798381917199}, "mds3": {"value": -36.06378961766521}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -6.3372068854083885}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001791", "node_attrs": {"div": 56, "num_date": {"value": 2021.984480236386, "confidence": [2021.9355417147303, 2022.0013698630137]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NV-NSPHL-22-00005901/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.994627249256891}, "umap_x": {"value": 20.355673}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.7090816}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.1287335529609224}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.57668146833888}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.259693611795326}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "USA"}, "mds2": {"value": -32.570204312872875}, "mds3": {"value": -26.07007671249713}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 13.186231920929975}}, "branch_attrs": {"mutations": {}}}, {"name": "HongKong/HKU-220213-333/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.675124900870889}, "umap_x": {"value": 20.517862}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.739404}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.820738903468575}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.68731738586675}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.931147940638564}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -46.74286356058099}, "mds3": {"value": -36.306538956140514}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 1.8503914593470088}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001793", "node_attrs": {"div": 55, "num_date": {"value": 2021.7844071747127, "confidence": [2021.675079312072, 2021.880552375089]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001794", "node_attrs": {"div": 55, "num_date": {"value": 2021.836052037291, "confidence": [2021.6719806662954, 2021.893309131072]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3764/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9876712328767, "confidence": [2021.9876712328767, 2021.9876712328767]}, "tsne_x": {"value": -3.013773492050662}, "umap_x": {"value": 20.684183}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.434693}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.63822945500102}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.44992849856956}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.954960930090916}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.213760474484}, "mds3": {"value": -36.76655993996988}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 30.970902190117457}}, "branch_attrs": {"mutations": {"nuc": ["A5608G", "C9073T"]}}}, {"name": "NODE_0001795", "node_attrs": {"div": 55, "num_date": {"value": 2021.8521571843655, "confidence": [2021.6824000150073, 2021.9265928550558]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS11214GENOV890126960063/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_x": {"value": -2.7207400219365296}, "umap_x": {"value": 20.628437}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.9569864}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.471936296281747}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.21"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.57718589543927}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.075072621984768}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Brazil"}, "mds2": {"value": -47.01461524439005}, "mds3": {"value": -35.07114713969711}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -3.1889136735826376}}, "branch_attrs": {"mutations": {"nuc": ["C20221A", "G27762T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AG51/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.463507504399632}, "umap_x": {"value": 20.722538}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.1241283}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.51221526651122}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.71899414759624}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.196350260954338}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -44.78918071725079}, "mds3": {"value": -34.353110654218035}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.662399822159646}}, "branch_attrs": {"mutations": {"nuc": ["T2067C", "C21727T"]}}}]}]}, {"name": "NODE_0001796", "node_attrs": {"div": 55, "num_date": {"value": 2021.832642875096, "confidence": [2021.6711705033651, 2021.8800048124058]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z749/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.8972602739725, "confidence": [2021.8972602739725, 2021.8972602739725]}, "tsne_x": {"value": -2.6540180337358}, "umap_x": {"value": 20.374142}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.7222986}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.5029801604717954}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.692308338098}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.02676795359977}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -33.57924574537972}, "mds3": {"value": -26.140537185705664}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 7.449068576302566}}, "branch_attrs": {"mutations": {"nuc": ["T9868C"]}}}, {"name": "NODE_0001467", "node_attrs": {"div": 56, "num_date": {"value": 2021.8942168890446, "confidence": [2021.74155321093, 2021.9594413446039]}}, "branch_attrs": {"mutations": {"nuc": ["C29632T"]}}, "children": [{"name": "NODE_0001798", "node_attrs": {"div": 56, "num_date": {"value": 2021.954285483199, "confidence": [2021.8947278583403, 2021.9931506849316]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3789/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9931506849316, "confidence": [2021.9931506849316, 2021.9931506849316]}, "tsne_x": {"value": -2.8088783913601367}, "umap_x": {"value": 20.753761}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.440787}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.780546086802897}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.52839898921262}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.820773773258098}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.020212131880456}, "mds3": {"value": -36.76121703702142}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 32.06880399825522}}, "branch_attrs": {"mutations": {}}}, {"name": "OV485564", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.600179165001564}, "umap_x": {"value": 20.774492}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.0494184}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.049723208918789}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.51985620754327}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.778278259459706}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -45.33025457905169}, "mds3": {"value": -34.78247845786249}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.13045122184201}}, "branch_attrs": {"mutations": {"nuc": ["G20578T"]}}}]}, {"name": "NODE_0001799", "node_attrs": {"div": 56, "num_date": {"value": 2021.9546590297928, "confidence": [2021.742052004101, 2021.97800892648]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0045/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_x": {"value": -2.9116339506507547}, "umap_x": {"value": 20.527946}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.608545}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.544987075673439}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.27819525325162}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.335214861582514}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -47.11210911521771}, "mds3": {"value": -37.8223259972069}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 12.83327185834441}}, "branch_attrs": {"mutations": {"nuc": ["C1419T", "C2595T", "-28365A"]}}}, {"name": "OX844176", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.8362561836674054}, "umap_x": {"value": 20.322018}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.7654004}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.833498957669198}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.614399941828765}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -10.779187474006484}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -34.127105533556346}, "mds3": {"value": -27.3098502802842}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 9.317916695501374}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001468", "node_attrs": {"div": 57, "num_date": {"value": 2021.9524512208914, "confidence": [2021.7766131018884, 2021.968493150685]}}, "branch_attrs": {"mutations": {"nuc": ["T3104C"]}}, "children": [{"name": "NZL/21MV3625/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_x": {"value": -2.8751520748009214}, "umap_x": {"value": 20.713085}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.3271704}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.700599965887052}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.380455110446206}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.37318704662134}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.665850605994905}, "mds3": {"value": -37.97657557900233}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.357053532981183}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001469", "node_attrs": {"div": 58, "num_date": {"value": 2021.9544111428013, "confidence": [2021.8353803704779, 2021.9903092905963]}}, "branch_attrs": {"mutations": {"nuc": ["G25352A"], "S": ["V1264M"]}, "labels": {"aa": "S: V1264M"}}, "children": [{"name": "NZL/22MV0068/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.996843735262704}, "umap_x": {"value": 20.726923}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.3308964}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.733670360550054}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.2053068297121}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.132743956174863}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.82075090396801}, "mds3": {"value": -38.2792809815543}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.55397500745304}}, "branch_attrs": {"mutations": {}}}, {"name": "Switzerland/GR-ETHZ-673757/2022", "node_attrs": {"div": 62, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.104790880327221}, "umap_x": {"value": 20.440067}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5447164}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.264978923577831}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 38.732481894307526}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -17.259325146729328}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Graub\u00fcnden"}, "mds2": {"value": -49.13128115886307}, "mds3": {"value": -37.53436383871173}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -1.358947130140787}}, "branch_attrs": {"mutations": {"nuc": ["G2492A", "C4940T", "A22102G", "C26770T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0001802", "node_attrs": {"div": 55, "num_date": {"value": 2021.6880275641545, "confidence": [2021.574030271408, 2021.8515506449364]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV590213", "node_attrs": {"div": 57, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_x": {"value": -2.4125346875508686}, "umap_x": {"value": 20.753185}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.130788}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.053913854932655}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.715813928769535}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.029319965105667}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -45.15972393337182}, "mds3": {"value": -34.72018340345514}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.126199107173682}}, "branch_attrs": {"mutations": {"nuc": ["C2902T", "G12575A"]}}}, {"name": "NODE_0001803", "node_attrs": {"div": 55, "num_date": {"value": 2021.7188955511049, "confidence": [2021.5727831385584, 2021.859626972986]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001441", "node_attrs": {"div": 56, "num_date": {"value": 2021.8329546303164, "confidence": [2021.649538783585, 2021.920338260206]}}, "branch_attrs": {"mutations": {"nuc": ["C12786T"]}}, "children": [{"name": "MWI/MLW000792/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9493150684932, "confidence": [2021.9493150684932, 2021.9493150684932]}, "tsne_x": {"value": -2.9774120353322777}, "umap_x": {"value": 20.502083}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.656013}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.226542041711545}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.370134559649046}, "country": {"value": "Malawi"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.100927696268537}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Malawi"}, "mds2": {"value": -48.47305519559}, "mds3": {"value": -37.11057006888875}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 10.834935647704691}}, "branch_attrs": {"mutations": {"nuc": ["C8326T", "A10892G"]}}}, {"name": "NODE_0001805", "node_attrs": {"div": 56, "num_date": {"value": 2021.8478378409427, "confidence": [2021.6239648491255, 2021.9475342465753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS11077GENOV828565927422/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_x": {"value": -2.7226089843606687}, "umap_x": {"value": 20.497498}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.6998887}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.436296724617915}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.52138168258413}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.270039066540514}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Brazil"}, "mds2": {"value": -47.533219693172605}, "mds3": {"value": -36.15924511187052}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -2.0773720588499387}}, "branch_attrs": {"mutations": {"nuc": ["T1582A"]}}}, {"name": "NODE_0001806", "node_attrs": {"div": 56, "num_date": {"value": 2021.8903932256944, "confidence": [2021.627182044541, 2021.9575342465753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS11353/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9575342465753, "confidence": [2021.9575342465753, 2021.9575342465753]}, "tsne_x": {"value": -3.1802330148240774}, "umap_x": {"value": 20.66488}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.433845}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 26.26749988194765}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.51089636603965}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -9.597526484854878}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Kenya"}, "mds2": {"value": -44.15125476963385}, "mds3": {"value": -32.20388636957689}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -0.1995921399087901}}, "branch_attrs": {"mutations": {"nuc": ["-6513G", "-6514T", "-6515T"]}}}, {"name": "NODE_0001807", "node_attrs": {"div": 56, "num_date": {"value": 2021.9528638047946, "confidence": [2021.6178803030195, 2021.964678001982]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0066/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.2089798169788706}, "umap_x": {"value": 20.704212}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.375862}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.634048797793602}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.33838452052296}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.435338166590848}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.83795398149324}, "mds3": {"value": -37.49471654327196}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 30.973343726574303}}, "branch_attrs": {"mutations": {"nuc": ["C745T", "G4486T"]}}}, {"name": "Brazil/BR-SP-UW22010114394/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -3.2441897257217005}, "umap_x": {"value": 20.581938}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.8731403}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.041514773444261}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.35467906137694}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.424402847315555}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Brazil"}, "mds2": {"value": -48.949328322551786}, "mds3": {"value": -35.27848489851617}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 30.52132778262112}}, "branch_attrs": {"mutations": {"nuc": ["C5388T", "C6990T", "G22696A"]}}}]}]}]}]}, {"name": "NODE_0001808", "node_attrs": {"div": 55, "num_date": {"value": 2021.7444157966781, "confidence": [2021.5716144367323, 2021.8691345516042]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001809", "node_attrs": {"div": 55, "num_date": {"value": 2021.7592536978236, "confidence": [2021.5712648788465, 2021.889750779056]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001810", "node_attrs": {"div": 55, "num_date": {"value": 2021.846654541186, "confidence": [2021.6652825209749, 2021.8945205479451]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0039/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.56219981768575}, "umap_x": {"value": 20.68208}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.2178288}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.3803909721347605}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.35530667073438}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.152602991158275}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -45.55094223836738}, "mds3": {"value": -33.6978843584255}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 15.486425776850284}}, "branch_attrs": {"mutations": {"nuc": ["C12781T", "T28271-", "T28311C", "-28362G", "-28363A", "-28364G", "-28365A", "-28366A", "-28367C", "-28368G", "-28369C", "-28370A"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AW75/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_x": {"value": -2.552309535983182}, "umap_x": {"value": 20.69761}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.439106}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.667204289755772}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.815876906776886}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.705978592662191}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -42.06664362831008}, "mds3": {"value": -32.97513695628207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.092059798786601}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001811", "node_attrs": {"div": 55, "num_date": {"value": 2021.7821328142152, "confidence": [2021.5721695503933, 2021.9243019492537]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001812", "node_attrs": {"div": 55, "num_date": {"value": 2021.835609599525, "confidence": [2021.6697114183114, 2021.9534538844823]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3583/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9602739726026, "confidence": [2021.9602739726026, 2021.9602739726026]}, "tsne_x": {"value": -2.7511236125302365}, "umap_x": {"value": 20.702925}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4442186}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.637042207963572}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1.10"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.58411352098612}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.13276328383528}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.193138663120585}, "mds3": {"value": -37.02933172385052}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 30.98130958365448}}, "branch_attrs": {"mutations": {"nuc": ["A17042G"]}}}, {"name": "NODE_0001813", "node_attrs": {"div": 55, "num_date": {"value": 2021.8917152781548, "confidence": [2021.6783913626796, 2021.9630136986302]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKU-220213-234/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9630136986302, "confidence": [2021.9630136986302, 2021.9630136986302]}, "tsne_x": {"value": -2.8106542333556286}, "umap_x": {"value": 20.634764}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.925561}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.827883716653691}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.58301561756439}, "country": {"value": "Hong Kong"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.91532094127672}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Hong Kong"}, "mds2": {"value": -47.049176937396425}, "mds3": {"value": -35.11090585956974}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 1.850168517267908}}, "branch_attrs": {"mutations": {"nuc": ["G5230A", "T24022C"]}}}, {"name": "NODE_0001814", "node_attrs": {"div": 55, "num_date": {"value": 2021.952860569455, "confidence": [2021.7546092994953, 2021.9709222987917]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV329889", "node_attrs": {"div": 55, "num_date": {"value": 2021.9739726027397, "confidence": [2021.9739726027397, 2021.9739726027397]}, "tsne_x": {"value": -2.592006800896816}, "umap_x": {"value": 20.757803}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.3733497}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.053480644240811}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.80810325345554}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.954548403304496}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Scotland"}, "mds2": {"value": -43.8919272829359}, "mds3": {"value": -33.64228646601566}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.1259192180169935}}, "branch_attrs": {"mutations": {}}}, {"name": "NGA/CV4995/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9739726027397, "confidence": [2021.9739726027397, 2021.9739726027397]}, "tsne_x": {"value": -2.806349050465654}, "umap_x": {"value": 20.691936}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.2201233}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.565264949243111}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.686126786380896}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.575462432233904}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Nigeria"}, "mds2": {"value": -45.75581596040193}, "mds3": {"value": -34.20132581808211}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -3.6013690522735016}}, "branch_attrs": {"mutations": {"nuc": ["T27722C"]}}}]}]}]}, {"name": "NODE_0001457", "node_attrs": {"div": 58, "num_date": {"value": 2021.8448710084117, "confidence": [2021.7751707523005, 2021.9350746709804]}}, "branch_attrs": {"mutations": {"nuc": ["T10135C", "C25708T", "A29301G"]}}, "children": [{"name": "USA/CO-CDPHE-2102968204/2022", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.52612054912422}, "umap_x": {"value": 20.423622}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.660711}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.13394378597086}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 38.84771673756181}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.401648692943567}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "USA"}, "mds2": {"value": -36.30727287814356}, "mds3": {"value": -29.130509010235773}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 13.196700933816295}}, "branch_attrs": {"mutations": {"nuc": ["A13884G", "C16362T"]}}}, {"name": "NODE_0001816", "node_attrs": {"div": 58, "num_date": {"value": 2021.8910093688814, "confidence": [2021.7659413912993, 2021.9443715421125]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV438545", "node_attrs": {"div": 59, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_x": {"value": -2.20062942658046}, "umap_x": {"value": 20.699085}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.8326817}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.607684932088475}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.16241774531276}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -16.594214850295096}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Scotland"}, "mds2": {"value": -45.87143812114014}, "mds3": {"value": -35.43500214498094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.759228985452261}}, "branch_attrs": {"mutations": {"nuc": ["C28849T"]}}}, {"name": "NODE_0001817", "node_attrs": {"div": 58, "num_date": {"value": 2021.893144540788, "confidence": [2021.7728784696094, 2021.9470398830365]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001818", "node_attrs": {"div": 58, "num_date": {"value": 2021.9077428058565, "confidence": [2021.7723549232785, 2021.9575342465753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/0-94787-4/2022", "node_attrs": {"div": 63, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.3828565397430586}, "umap_x": {"value": 20.68408}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.3631406}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.342553655592976}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 38.64023894762697}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.242157348898413}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Tennessee"}, "mds2": {"value": -45.32330863726057}, "mds3": {"value": -33.058529227400335}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.2940192647511}}, "branch_attrs": {"mutations": {"nuc": ["C11195T", "C15924T", "A22992G", "A22995C", "C23013A"], "S": ["N477S", "K478T", "A484E"]}, "labels": {"aa": "S: N477S, K478T, A484E"}}}, {"name": "OV596361", "node_attrs": {"div": 59, "num_date": {"value": 2021.9575342465753, "confidence": [2021.9575342465753, 2021.9575342465753]}, "tsne_x": {"value": -2.302449311486503}, "umap_x": {"value": 20.577723}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5438395}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.896129451759927}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.15.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.08873108584057}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.49694182461682}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -48.62565294187968}, "mds3": {"value": -35.695020639092526}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 4.6507979920457085}}, "branch_attrs": {"mutations": {"nuc": ["A24803G"], "S": ["I1081V"]}, "labels": {"aa": "S: I1081V"}}}]}, {"name": "NODE_0001819", "node_attrs": {"div": 58, "num_date": {"value": 2021.984480236386, "confidence": [2021.9232397980725, 2022.0013698630137]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-CDC-LC0466707/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.4166035824014536}, "umap_x": {"value": 20.457142}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.5399547}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.728356944344247}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.224313382634605}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.3907619866296}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Massachusetts"}, "mds2": {"value": -49.473558994541406}, "mds3": {"value": -35.584577843493186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 33.395444599646}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/GA-CDC-LC0461412/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.6307541022126166}, "umap_x": {"value": 20.619936}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.870375}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.371282706883099}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.22107489045571}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.217367338285763}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Georgia"}, "mds2": {"value": -48.16763078198107}, "mds3": {"value": -35.402495884869374}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 2.7986682048893194}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}, {"name": "NODE_0001476", "node_attrs": {"div": 56, "num_date": {"value": 2021.7618578106396, "confidence": [2021.6760731090067, 2021.8812700167903]}}, "branch_attrs": {"mutations": {"nuc": ["G5924A"]}}, "children": [{"name": "NODE_0001603", "node_attrs": {"div": 56, "num_date": {"value": 2021.7885956662858, "confidence": [2021.6765005077073, 2021.9219178082192]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-N227/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9219178082192, "confidence": [2021.9219178082192, 2021.9219178082192]}, "tsne_x": {"value": -1.9988770348345384}, "umap_x": {"value": 20.612791}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.957845}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.25437401400693}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 40.16328390424088}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.102055847590474}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -45.5299651987155}, "mds3": {"value": -35.377975432717136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.611691858958512}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "A8805C", "C23896T"]}}}, {"name": "NODE_0001605", "node_attrs": {"div": 56, "num_date": {"value": 2021.84211076046, "confidence": [2021.6732279638236, 2021.9418670047232]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0055/2021", "node_attrs": {"div": 60, "num_date": {"value": 2021.9986301369863, "confidence": [2021.9986301369863, 2021.9986301369863]}, "tsne_x": {"value": -1.7139060855401098}, "umap_x": {"value": 20.562166}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.764239}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.732589966135044}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.465382304128205}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.818076794130622}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -43.16761634756894}, "mds3": {"value": -41.44597336574631}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.563697505736915}}, "branch_attrs": {"mutations": {"nuc": ["C5672T", "T8652C", "A15192G", "T25532C", "A26487-", "T26488-", "A26489-"]}}}, {"name": "NZL/22MV0061/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.2647014182449965}, "umap_x": {"value": 20.648336}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.481148}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.868254622329764}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.628387009467005}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.704921857928849}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -40.41949602304187}, "mds3": {"value": -34.820767102236545}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 33.49235028377751}}, "branch_attrs": {"mutations": {"nuc": ["T19404C"]}}}]}]}, {"name": "NODE_0001821", "node_attrs": {"div": 56, "num_date": {"value": 2021.8355349205876, "confidence": [2021.686518652078, 2021.8947912598371]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-N025/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9027397260274, "confidence": [2021.9027397260274, 2021.9027397260274]}, "tsne_x": {"value": -2.2728849327550305}, "umap_x": {"value": 20.368223}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.7135086}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.6162151213218264}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.78266798360158}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.383295888100712}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -35.38926922628246}, "mds3": {"value": -27.5489479299656}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 5.622485024000455}}, "branch_attrs": {"mutations": {"nuc": ["C10440T"]}}}, {"name": "NODE_0001822", "node_attrs": {"div": 56, "num_date": {"value": 2021.8930378673156, "confidence": [2021.8326260073814, 2021.8972602739725]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-AW76/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.8972602739725, "confidence": [2021.8972602739725, 2021.8972602739725]}, "tsne_x": {"value": -2.3225984370750394}, "umap_x": {"value": 20.654057}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.464125}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.677332258840639}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.85894478734768}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.014817368078898}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -42.741665902288695}, "mds3": {"value": -33.56036501874756}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.077756068888842}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001823", "node_attrs": {"div": 56, "num_date": {"value": 2021.952860569455, "confidence": [2021.8875271010722, 2021.9739726027397]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3699/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9739726027397, "confidence": [2021.9739726027397, 2021.9739726027397]}, "tsne_x": {"value": -2.4626729031032992}, "umap_x": {"value": 20.72767}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.330071}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.970909930159109}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.788548138025135}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.72565041282905}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -44.92105859830153}, "mds3": {"value": -33.85821229284048}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 18.689042688637866}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001824", "node_attrs": {"div": 56, "num_date": {"value": 2021.968392707719, "confidence": [2021.9270963657054, 2021.9938721790936]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0071/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9986301369863, "confidence": [2021.9986301369863, 2021.9986301369863]}, "tsne_x": {"value": -2.267453639822808}, "umap_x": {"value": 20.625095}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.309407}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.701629259573738}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.66026258842748}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.737746543291044}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.90392430518874}, "mds3": {"value": -37.99888124552304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.34493992093223}}, "branch_attrs": {"mutations": {"nuc": ["C25452T"]}}}, {"name": "NZL/22MV0062/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.383372847890228}, "umap_x": {"value": 20.698042}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4280663}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.733224455283231}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.70127180404733}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.6513257020258}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -41.04285779603814}, "mds3": {"value": -36.55306489350345}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.55261430275368}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001825", "node_attrs": {"div": 56, "num_date": {"value": 2021.7841856550237, "confidence": [2021.6750366057247, 2021.888963410596]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-N026/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9027397260274, "confidence": [2021.9027397260274, 2021.9027397260274]}, "tsne_x": {"value": -2.2549692693541434}, "umap_x": {"value": 20.385254}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.702796}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.0783172441617793}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.86185772219061}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.348144476225686}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -34.01764561930366}, "mds3": {"value": -28.249928508803816}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 11.400167888589037}}, "branch_attrs": {"mutations": {"nuc": ["C21736T"]}}}, {"name": "NODE_0001826", "node_attrs": {"div": 56, "num_date": {"value": 2021.8001449208627, "confidence": [2021.6757047363305, 2021.8972602739725]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-N012/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.8972602739725, "confidence": [2021.8972602739725, 2021.8972602739725]}, "tsne_x": {"value": -2.432633163652261}, "umap_x": {"value": 20.35595}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.7234697}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.6463257965939104}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "tsne_y": {"value": 39.80336352005395}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.947558034348951}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "South Africa"}, "mds2": {"value": -33.67399984541084}, "mds3": {"value": -27.04160284348373}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 9.53807467185224}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001486", "node_attrs": {"div": 57, "num_date": {"value": 2021.8352429762124, "confidence": [2021.7066449692643, 2021.9135573382514]}}, "branch_attrs": {"mutations": {"nuc": ["C23664T"], "S": ["A701V"]}, "labels": {"aa": "S: A701V"}}, "children": [{"name": "USA/MA-CDCBI-CRSP_J76CTGNV4OWYXKJS/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9712328767123, "confidence": [2021.9712328767123, 2021.9712328767123]}, "tsne_x": {"value": -2.083949021137797}, "umap_x": {"value": 20.670584}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.269771}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.056972405434868}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 40.24023421157991}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.083770822436083}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Massachusetts"}, "mds2": {"value": -45.33775388581036}, "mds3": {"value": -33.88426332680163}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -11.715250871465932}}, "branch_attrs": {"mutations": {"nuc": ["C1376T", "C11866T"]}}}, {"name": "NODE_0001828", "node_attrs": {"div": 57, "num_date": {"value": 2021.8341745730722, "confidence": [2021.7112955776397, 2021.9254223798166]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001488", "node_attrs": {"div": 58, "num_date": {"value": 2021.858849683917, "confidence": [2021.7917656775155, 2021.97870090792]}}, "branch_attrs": {"mutations": {"nuc": ["T23489C"], "S": ["F643L"]}, "labels": {"aa": "S: F643L"}}, "children": [{"name": "BGD/Laila_693/2022", "node_attrs": {"div": 61, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -1.7208896315658628}, "umap_x": {"value": 20.440754}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.6557465}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.766369563847496}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 40.17558928530069}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.667638366835474}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Bangladesh"}, "mds2": {"value": -38.09928566128439}, "mds3": {"value": -29.63199143989817}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "3"}, "pca2": {"value": 18.78627434444214}}, "branch_attrs": {"mutations": {"nuc": ["G22882T", "T25000C", "G26577C"], "S": ["K440N"]}, "labels": {"aa": "S: K440N"}}}, {"name": "NODE_0001830", "node_attrs": {"div": 58, "num_date": {"value": 2021.8894433490832, "confidence": [2021.7900978499124, 2021.9799208830111]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0059/2022", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -1.6479306577319683}, "umap_x": {"value": 20.535748}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.727815}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.644855119377253}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.96862087206637}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.075685087062404}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -43.74408052673332}, "mds3": {"value": -41.55950037326999}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 30.98966522212173}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C6573T", "A23899G"]}}}, {"name": "NODE_0001831", "node_attrs": {"div": 58, "num_date": {"value": 2021.8999333057047, "confidence": [2021.79874570996, 2021.990410958904]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21342888112_S66_L001/2021", "node_attrs": {"div": 62, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_x": {"value": -1.6342748673239436}, "umap_x": {"value": 20.6572}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.4692965}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.614986995851369}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 40.195404012493526}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.764452623089472}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "Bahrain"}, "mds2": {"value": -41.97734271571465}, "mds3": {"value": -31.984503624352865}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": -1.27212662673517}}, "branch_attrs": {"mutations": {"nuc": ["A10449C", "C17678T", "T22813G", "G26530A"], "S": ["N417K"]}, "labels": {"aa": "S: N417K"}}}, {"name": "NODE_0001832", "node_attrs": {"div": 58, "num_date": {"value": 2021.9541872487232, "confidence": [2021.914558301165, 2022.0008211523652]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0058/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.082527682350767}, "umap_x": {"value": 20.606636}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.860687}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.90968739588259}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.9344925576365}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.62561348037183}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -47.11481784152066}, "mds3": {"value": -36.38349848797149}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 20.171243113495883}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-"]}}}, {"name": "OV677111", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.047992932297238}, "umap_x": {"value": 20.749807}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.8254232}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.455651176438412}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.9840442742768}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.553646073696406}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -45.13728484794737}, "mds3": {"value": -36.31190856762888}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.606095412432279}}, "branch_attrs": {"mutations": {"nuc": ["C4754T"]}}}]}]}]}]}, {"name": "NODE_0001492", "node_attrs": {"div": 58, "num_date": {"value": 2021.8693345258753, "confidence": [2021.7882754779364, 2021.9321853846636]}}, "branch_attrs": {"mutations": {"nuc": ["C3241T"]}}, "children": [{"name": "NZL/21MV3585/2021", "node_attrs": {"div": 61, "num_date": {"value": 2021.9602739726026, "confidence": [2021.9602739726026, 2021.9602739726026]}, "tsne_x": {"value": -1.743366221077801}, "umap_x": {"value": 20.69974}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -6.3566213}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.660546597967968}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.6837233573144}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.201563764021165}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "New Zealand"}, "mds2": {"value": -46.24238474313941}, "mds3": {"value": -30.678910140036155}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 31.34324911676214}}, "branch_attrs": {"mutations": {"nuc": ["A28881T", "A28882G", "C28883G"]}}}, {"name": "NODE_0001636", "node_attrs": {"div": 58, "num_date": {"value": 2021.8916204928844, "confidence": [2021.793934309395, 2021.9393149032205]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV643099", "node_attrs": {"div": 59, "num_date": {"value": 2021.9712328767123, "confidence": [2021.9712328767123, 2021.9712328767123]}, "tsne_x": {"value": -2.043229352925545}, "umap_x": {"value": 20.774618}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.9770937}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.609141620251752}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.93256454236764}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.83307481757713}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -45.087588821328254}, "mds3": {"value": -34.88538775447784}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 6.760083546822141}}, "branch_attrs": {"mutations": {"nuc": ["C10138T"]}}}, {"name": "NODE_0001834", "node_attrs": {"div": 58, "num_date": {"value": 2021.9314773616343, "confidence": [2021.792495169465, 2021.9493150684932]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV547265", "node_attrs": {"div": 59, "num_date": {"value": 2021.9493150684932, "confidence": [2021.9493150684932, 2021.9493150684932]}, "tsne_x": {"value": -1.9054897142660487}, "umap_x": {"value": 20.663511}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.743765}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.896808398266032}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 40.04000158205613}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -15.035607615050925}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -47.68977232749584}, "mds3": {"value": -36.32259763941754}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 4.651537126167464}}, "branch_attrs": {"mutations": {"nuc": ["G13897T"]}}}, {"name": "NODE_0001835", "node_attrs": {"div": 58, "num_date": {"value": 2021.9523419978475, "confidence": [2021.9102599648065, 2021.968493150685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV617542", "node_attrs": {"div": 58, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_x": {"value": -2.039287984646829}, "umap_x": {"value": 20.744858}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.880958}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.053385218679821}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.97912812611551}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.583982969108217}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -46.73383934934525}, "mds3": {"value": -34.97821636149465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.127005220302851}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001836", "node_attrs": {"div": 58, "num_date": {"value": 2021.960208121699, "confidence": [2021.9317912900287, 2021.9877638159455]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV670045", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -1.9094278169423724}, "umap_x": {"value": 20.604729}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.675398}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.896641759421544}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 40.0543478167245}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.80974020122484}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -47.96066774996852}, "mds3": {"value": -36.17331093571615}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 4.651572974061255}}, "branch_attrs": {"mutations": {"nuc": ["T19088G"]}}}, {"name": "NODE_0001837", "node_attrs": {"div": 58, "num_date": {"value": 2021.9706489675375, "confidence": [2021.947044455507, 2021.9968375843646]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV474836", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -1.9094289603963608}, "umap_x": {"value": 20.6635}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.7784724}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.046401657150244}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 40.05434741799912}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -14.519560995840465}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -47.13346528138895}, "mds3": {"value": -35.63658403641976}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.124395953083513}}, "branch_attrs": {"mutations": {"nuc": ["A8343T"]}}}, {"name": "OV683611", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_x": {"value": -2.0392878146469005}, "umap_x": {"value": 20.689201}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "umap_y": {"value": -5.770084}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.096822643994901}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "tsne_y": {"value": 39.9791282755056}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -13.901305703059846}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "division": {"value": "England"}, "mds2": {"value": -47.55372414177754}, "mds3": {"value": -35.41864716967066}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds_label_for_Nextstrain_clade": {"value": "4"}, "pca2": {"value": 5.625115770386562}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001543", "node_attrs": {"div": 27, "num_date": {"value": 2020.7385174654166, "confidence": [2020.5682520992182, 2020.8163638227918]}}, "branch_attrs": {"mutations": {"nuc": ["C913T", "C3267T", "C5388A", "C5986T", "C14676T", "C15279T", "T16176C", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "T21992-", "A21993-", "T21994-", "C23271A", "C23709T", "T24506G", "G24914C", "C27972T", "G28048T", "A28111G", "A28271-", "G28280C", "A28281T", "T28282A", "C28977T"], "S": ["I68X", "H69-", "V70X", "Y144-", "A570D", "T716I", "S982A", "D1118H", "*1274X"]}, "labels": {"aa": "S: I68X, H69-, V70X, Y144-, A570D, T716I, S982A, D1118H, *1274X"}}, "children": [{"name": "OU154914", "node_attrs": {"div": 38, "num_date": {"value": 2021.3082191780823, "confidence": [2021.3082191780823, 2021.3082191780823]}, "tsne_x": {"value": -19.08976322254367}, "umap_x": {"value": 18.524565}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.742111}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.432502936884197}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.735650948345082}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.27379020337874}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Hamburg"}, "mds2": {"value": 19.078123028478227}, "mds3": {"value": -37.6226313639521}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -18.254652054029137}}, "branch_attrs": {"mutations": {"nuc": ["C344T", "A905G", "C2119T", "C4021T", "C11199T", "C12970T", "C13551T", "A20727G", "C25638T", "C29750T", "C29769T"]}}}, {"name": "NODE_0001544", "node_attrs": {"div": 28, "num_date": {"value": 2020.780939455543, "confidence": [2020.6200262021987, 2020.8277177013395]}}, "branch_attrs": {"mutations": {"nuc": ["T6954C"]}}, "children": [{"name": "NODE_0001621", "node_attrs": {"div": 29, "num_date": {"value": 2020.839523372759, "confidence": [2020.645673154458, 2020.9433486714927]}}, "branch_attrs": {"mutations": {"nuc": ["C25413T"]}}, "children": [{"name": "USA/MA-CDC-LC0061957/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.3602739726027, "confidence": [2021.3602739726027, 2021.3602739726027]}, "tsne_x": {"value": -18.97609606293523}, "umap_x": {"value": 18.501476}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.713531}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.173026703788363}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.710428192068182}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.9225951947833706}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 27.97392678458847}, "mds3": {"value": -32.289616353694186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.6813334252915324}}, "branch_attrs": {"mutations": {"nuc": ["G1957A", "A2276G", "A3094T", "G4136T", "C11824T", "G19542T", "G22841A", "G25481A", "G25954T", "G26614T"], "S": ["D427N"]}, "labels": {"aa": "S: D427N"}}}, {"name": "NODE_0001622", "node_attrs": {"div": 35, "num_date": {"value": 2021.0664758554626, "confidence": [2020.9188841464538, 2021.1375683631966]}}, "branch_attrs": {"mutations": {"nuc": ["C6145A", "G7272A", "C12933T", "C16726T", "C21843T", "C29272T"], "S": ["S94F"]}, "labels": {"aa": "S: S94F"}}, "children": [{"name": "NZL/21MV0196/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.1986301369864, "confidence": [2021.1986301369864, 2021.1986301369864]}, "tsne_x": {"value": -17.669638187462954}, "umap_x": {"value": 18.801472}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 11.036078}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.4608764736812985}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.777056143988503}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.864447142472509}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 33.212184022583045}, "mds3": {"value": -31.351328584827105}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 11.724526525732989}}, "branch_attrs": {"mutations": {"nuc": ["G4951A", "C7423T", "G7798T", "C21114T", "T22246G"], "S": ["D228E"]}, "labels": {"aa": "S: D228E"}}}, {"name": "NZL/21MV0326/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.2753424657535, "confidence": [2021.2753424657535, 2021.2753424657535]}, "tsne_x": {"value": -17.674230877548826}, "umap_x": {"value": 18.803522}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 11.037629}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.724603956399223}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.779599174169}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.845298494951995}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 26.39580948069761}, "mds3": {"value": -35.565549809782745}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7056880117771662}}, "branch_attrs": {"mutations": {"nuc": ["C2306T", "C7528T", "G24821T", "C25728T", "C28657T"], "S": ["A1087S"]}, "labels": {"aa": "S: A1087S"}}}]}]}, {"name": "NODE_0001843", "node_attrs": {"div": 28, "num_date": {"value": 2020.80010256136, "confidence": [2020.6211523795796, 2020.9174846137112]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001620", "node_attrs": {"div": 30, "num_date": {"value": 2020.9404250029486, "confidence": [2020.716696858516, 2021.0554261321388]}}, "branch_attrs": {"mutations": {"nuc": ["C292T", "C25626T"]}}, "children": [{"name": "OU150126", "node_attrs": {"div": 37, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_x": {"value": -16.986201389928528}, "umap_x": {"value": 17.202581}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.156701}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.161573182988599}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.80618830183851}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.983309257721204}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Germany"}, "mds2": {"value": 21.453957063156004}, "mds3": {"value": -27.267302163825534}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -10.84868738877246}}, "branch_attrs": {"mutations": {"nuc": ["A1C", "A4-", "A5-", "A6G", "G8C", "A22C", "G23A", "C1912T", "A28295C"]}}}, {"name": "OU084168", "node_attrs": {"div": 36, "num_date": {"value": 2021.1602739726027, "confidence": [2021.1602739726027, 2021.1602739726027]}, "tsne_x": {"value": -17.49300798431638}, "umap_x": {"value": 18.268957}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.453003}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.037398850790569}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.12804343319849}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.58478763221411}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Berlin"}, "mds2": {"value": 20.65690182368968}, "mds3": {"value": -33.80094784938554}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -11.09564011293608}}, "branch_attrs": {"mutations": {"nuc": ["C745T", "C6395T", "C8078T", "C12076T", "T18750C", "C28313T"]}}}]}, {"name": "NODE_0001639", "node_attrs": {"div": 29, "num_date": {"value": 2020.8779706172884, "confidence": [2020.7106847607572, 2020.9652037991716]}}, "branch_attrs": {"mutations": {"nuc": ["C21855T"], "S": ["S98F"]}, "labels": {"aa": "S: S98F"}}, "children": [{"name": "NZL/20CV0680/2020", "node_attrs": {"div": 32, "num_date": {"value": 2020.9658469945355, "confidence": [2020.9658469945355, 2020.9658469945355]}, "tsne_x": {"value": -17.094526687862235}, "umap_x": {"value": 17.103462}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.066042}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.725616796383812}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.55808595520997}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.82311409261324}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Auckland"}, "mds2": {"value": 18.024998985642693}, "mds3": {"value": -28.90892582901745}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7057817057127802}}, "branch_attrs": {"mutations": {"nuc": ["C15240T", "G26775A", "A26933G"]}}}, {"name": "NODE_0001846", "node_attrs": {"div": 29, "num_date": {"value": 2020.938930669508, "confidence": [2020.6734751174704, 2021.1221331230458]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Switzerland/BS-ETHZ-540373/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.204109589041, "confidence": [2021.204109589041, 2021.204109589041]}, "tsne_x": {"value": -17.347328235574846}, "umap_x": {"value": 17.76226}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.825614}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.529267643269093}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.462651560657346}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.35256184831423}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Basel-Stadt"}, "mds2": {"value": 19.109754516455048}, "mds3": {"value": -31.92677937487692}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.8761243357885321}}, "branch_attrs": {"mutations": {"nuc": ["G1304A", "G10046A", "T14988C", "G22244C", "C25810T"], "S": ["D228H"]}, "labels": {"aa": "S: D228H"}}}, {"name": "MNG/10011498/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5630136986301, "confidence": [2021.5630136986301, 2021.5630136986301]}, "tsne_x": {"value": -18.601561443247927}, "umap_x": {"value": 18.336416}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.534503}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.359872860089958}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.904715064446247}, "country": {"value": "Mongolia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.5875552073372594}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Mongolia"}, "mds2": {"value": 21.7409648599736}, "mds3": {"value": -34.55485084091813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -11.727020813697289}}, "branch_attrs": {"mutations": {"nuc": ["C2061T", "C3177T", "C4099T", "G6446T", "C18060T", "C21575T", "C25587T", "C28006T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}]}]}, {"name": "NODE_0001847", "node_attrs": {"div": 28, "num_date": {"value": 2020.808189780868, "confidence": [2020.6083470940684, 2020.9541742985132]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001607", "node_attrs": {"div": 29, "num_date": {"value": 2020.890912535521, "confidence": [2020.7834445302074, 2020.9867585076365]}}, "branch_attrs": {"mutations": {"nuc": ["C3177T"]}}, "children": [{"name": "OX574235", "node_attrs": {"div": 33, "num_date": {"value": 2020.9986338797814, "confidence": [2020.9986338797814, 2020.9986338797814]}, "tsne_x": {"value": -17.022147154529492}, "umap_x": {"value": 17.671484}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.673314}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.341387962519621}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.824676570547265}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.796998431109747}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Wales"}, "mds2": {"value": 21.626956317592946}, "mds3": {"value": -29.03031386474188}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -20.32052469754897}}, "branch_attrs": {"mutations": {"nuc": ["C1060T", "A2928G", "G9136T", "C18508T"]}}}, {"name": "NODE_0001849", "node_attrs": {"div": 29, "num_date": {"value": 2020.9927228149197, "confidence": [2020.7204636234087, 2021.161153979494]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX582862", "node_attrs": {"div": 34, "num_date": {"value": 2021.2013698630137, "confidence": [2021.2013698630137, 2021.2013698630137]}, "tsne_x": {"value": -16.64203289641438}, "umap_x": {"value": 17.5793}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.62102}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.127259437613442}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.92111696809457}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.418237280749743}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Wales"}, "mds2": {"value": 21.27120721615568}, "mds3": {"value": -29.99502771969573}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -8.495324238969271}}, "branch_attrs": {"mutations": {"nuc": ["C2880T", "T7891G", "C8025T", "C10507T", "C25513T"]}}}, {"name": "NODE_0001850", "node_attrs": {"div": 29, "num_date": {"value": 2021.0806506700908, "confidence": [2020.7149667561887, 2021.2215366302905]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "JPN/HiroFH64c/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_x": {"value": -17.136810088524243}, "umap_x": {"value": 17.322145}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.282048}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.73322872493804}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.57251292674783}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.477480221780757}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Japan"}, "mds2": {"value": 19.59882022016124}, "mds3": {"value": -29.263671381265123}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.713765375240484}}, "branch_attrs": {"mutations": {"nuc": ["C2842T", "C21660T", "G28109T"], "S": ["T33I"]}, "labels": {"aa": "S: T33I"}}}, {"name": "OU256609", "node_attrs": {"div": 35, "num_date": {"value": 2021.3, "confidence": [2021.3, 2021.3]}, "tsne_x": {"value": -18.127576572187618}, "umap_x": {"value": 18.078583}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.222238}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.733025443616573}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.020806721159595}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.029148180070695}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 21.87122706277973}, "mds3": {"value": -31.79815440022445}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6987130158597405}}, "branch_attrs": {"mutations": {"nuc": ["C7765T", "C9891T", "C13446T", "C16457T", "C24502A", "G25287T"], "S": ["S1242I"]}, "labels": {"aa": "S: S1242I"}}}]}]}]}, {"name": "NODE_0001611", "node_attrs": {"div": 29, "num_date": {"value": 2020.8708701582198, "confidence": [2020.6325253667194, 2021.03835868197]}}, "branch_attrs": {"mutations": {"nuc": ["C12970T"]}}, "children": [{"name": "NODE_0001614", "node_attrs": {"div": 34, "num_date": {"value": 2021.008708778357, "confidence": [2020.86485602601, 2021.1322049563294]}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "C7600T", "C7764T", "C14120T", "T16456C"]}}, "children": [{"name": "KEN/KEM-21-03-94257/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.1876712328767, "confidence": [2021.1876712328767, 2021.1876712328767]}, "tsne_x": {"value": -15.7401227295901}, "umap_x": {"value": 18.653446}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.880946}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.563014939902259}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.261300377612333}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.22805738840939}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 26.683587333266203}, "mds3": {"value": -32.7729271981644}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 13.56423032933823}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "C14937A", "C25572T", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-"]}}}, {"name": "NODE_0001615", "node_attrs": {"div": 37, "num_date": {"value": 2021.0941255106009, "confidence": [2020.9941277102093, 2021.153621350577]}}, "branch_attrs": {"mutations": {"nuc": ["A1168G", "C11200T", "G13201T"]}}, "children": [{"name": "DJI/NAMRU3_SOTF_EA26/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.1712328767123, "confidence": [2021.1712328767123, 2021.1712328767123]}, "tsne_x": {"value": -15.652951092413415}, "umap_x": {"value": 18.44533}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.654153}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.73151924213911}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.32240185282943}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.0378917447765217}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Djibouti"}, "mds2": {"value": 27.506856356271573}, "mds3": {"value": -32.32530906976556}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6997494449023876}}, "branch_attrs": {"mutations": {"nuc": ["C1170T"]}}}, {"name": "DJI/NAMRU3_SOTF_EA14/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.154794520548, "confidence": [2021.154794520548, 2021.154794520548]}, "tsne_x": {"value": -15.62229546812965}, "umap_x": {"value": 18.741074}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.974414}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.689156304597135}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.38456131084489}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.830596993157012}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Djibouti"}, "mds2": {"value": 34.37706203863854}, "mds3": {"value": -31.48766597394189}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7533099211964666}}, "branch_attrs": {"mutations": {"nuc": ["C21530G", "T21534A", "G21535T", "A21536C", "T21543-", "G21544-", "T21545-", "T21546-", "A21547-", "A21548-", "C21549-", "A21550-", "A21551-"]}}}]}]}, {"name": "NODE_0001854", "node_attrs": {"div": 29, "num_date": {"value": 2020.9385220059576, "confidence": [2020.6300188282974, 2021.0376147834318]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0132/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0534246575342, "confidence": [2021.0534246575342, 2021.0534246575342]}, "tsne_x": {"value": -17.04306750739513}, "umap_x": {"value": 17.040342}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.967831}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.519413638686597}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.70376161195656}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.852466719011187}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 12.62606842856039}, "mds3": {"value": -28.47618945885815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 15.504674472287688}}, "branch_attrs": {"mutations": {"nuc": ["A4094G", "G22427A", "C22522T"], "S": ["V289I"]}, "labels": {"aa": "S: V289I"}}}, {"name": "NODE_0001855", "node_attrs": {"div": 29, "num_date": {"value": 2020.9657559660386, "confidence": [2020.6350988785748, 2021.0581393536463]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0044/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_x": {"value": -17.021859335399984}, "umap_x": {"value": 17.10936}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.068997}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.538823180613306}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.49530902214597}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.116577400243244}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 20.32255484218745}, "mds3": {"value": -27.321808372071025}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 12.193906813705858}}, "branch_attrs": {"mutations": {"nuc": ["C3096T", "C17977T", "G25996T"]}}}, {"name": "OU129758", "node_attrs": {"div": 34, "num_date": {"value": 2021.2452054794521, "confidence": [2021.2452054794521, 2021.2452054794521]}, "tsne_x": {"value": -17.697264575431692}, "umap_x": {"value": 17.790087}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.858472}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.013294241960707}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.12791732557832}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.599319672329588}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Hamburg"}, "mds2": {"value": 19.30639534194508}, "mds3": {"value": -32.10992556877179}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -6.810279467398501}}, "branch_attrs": {"mutations": {"nuc": ["C850T", "T1885C", "T19038C", "A24014G", "C28498T"], "S": ["I818V"]}, "labels": {"aa": "S: I818V"}}}]}]}]}]}, {"name": "NODE_0001659", "node_attrs": {"div": 28, "num_date": {"value": 2020.845216465577, "confidence": [2020.7176939507208, 2020.9556993619415]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001597", "node_attrs": {"div": 29, "num_date": {"value": 2020.9930016708943, "confidence": [2020.8470145572817, 2021.0874702483788]}}, "branch_attrs": {"mutations": {"nuc": ["G18498T"]}}, "children": [{"name": "South_Africa/UW21052654719/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3986301369864, 2021.3986301369864]}, "tsne_x": {"value": -17.55504731506007}, "umap_x": {"value": 18.107782}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.24252}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.771333012428121}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.76663255098546}, "country": {"value": "South Africa"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.81393301347716}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "South Africa"}, "mds2": {"value": 25.472111595477976}, "mds3": {"value": -28.20679625555516}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 28.914993160829656}}, "branch_attrs": {"mutations": {"nuc": ["C7423T", "G8027T", "G13201T", "C27881T", "C29409T", "G29477T"]}}}, {"name": "OD995732", "node_attrs": {"div": 32, "num_date": {"value": 2021.127397260274, "confidence": [2021.127397260274, 2021.127397260274]}, "tsne_x": {"value": -17.141135759791688}, "umap_x": {"value": 17.47624}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.464715}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.731266308832039}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.61201418236229}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.74956162767108}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.463103309388487}, "mds3": {"value": -29.93956112350997}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6979551952329093}}, "branch_attrs": {"mutations": {"nuc": ["C3602T", "G10870T", "G23593T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}]}, {"name": "NODE_0001856", "node_attrs": {"div": 28, "num_date": {"value": 2020.8753235660888, "confidence": [2020.7258289034012, 2020.9594970981898]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001623", "node_attrs": {"div": 29, "num_date": {"value": 2020.9189587483297, "confidence": [2020.8015538318923, 2020.976211831571]}}, "branch_attrs": {"mutations": {"nuc": ["C2453T"]}}, "children": [{"name": "NODE_0001624", "node_attrs": {"div": 30, "num_date": {"value": 2020.9921625249772, "confidence": [2020.8731374479537, 2021.0902928890284]}}, "branch_attrs": {"mutations": {"nuc": ["C21622T"]}}, "children": [{"name": "DJI/NAMRU3_F232/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2753424657535, "confidence": [2021.2753424657535, 2021.2753424657535]}, "tsne_x": {"value": -16.673732221440925}, "umap_x": {"value": 18.5596}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.781253}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.607535247134179}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.43204039848228}, "country": {"value": "Djibouti"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.2647869739901069}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Djibouti"}, "mds2": {"value": 32.16349002528984}, "mds3": {"value": -28.56693914386476}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7064221605391587}}, "branch_attrs": {"mutations": {"nuc": ["C1387T", "A8512G", "G10870T", "G12268A", "C18171T", "G19388T", "G20476A", "G22104T", "C22329T"], "S": ["G181V", "S256L"]}, "labels": {"aa": "S: G181V, S256L"}}}, {"name": "BHR/341580934/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.154794520548, "confidence": [2021.154794520548, 2021.154794520548]}, "tsne_x": {"value": -16.95425995620144}, "umap_x": {"value": 17.184692}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.148989}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.417756404091318}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.016297263481164}, "country": {"value": "Bahrain"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.497869140207738}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Bahrain"}, "mds2": {"value": 20.441972193119256}, "mds3": {"value": -28.023797915008604}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -4.281302967689003}}, "branch_attrs": {"mutations": {"nuc": ["A5608G", "T25422C"]}}}]}, {"name": "NODE_0001629", "node_attrs": {"div": 30, "num_date": {"value": 2020.9452523227885, "confidence": [2020.838501695963, 2020.9884075065265]}}, "branch_attrs": {"mutations": {"nuc": ["G210T"]}}, "children": [{"name": "NZL/21CV0014/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.0013698630137, "confidence": [2021.0013698630137, 2021.0013698630137]}, "tsne_x": {"value": -16.67567175004115}, "umap_x": {"value": 17.379137}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.360347}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.706624911551329}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.32324844970065}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.543821576856583}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Auckland"}, "mds2": {"value": 24.962591415821898}, "mds3": {"value": -24.829119889257704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7175236204965152}}, "branch_attrs": {"mutations": {"nuc": ["C1190T", "C2536T", "T9454C", "C27575T"]}}}, {"name": "NZL/21MV0222/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2369863013698, "confidence": [2021.2369863013698, 2021.2369863013698]}, "tsne_x": {"value": -16.641422541049895}, "umap_x": {"value": 17.272903}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.287522}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 46.7594542320836}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.325851654327348}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -9.64967409152119}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 23.5235573478017}, "mds3": {"value": -24.252354562322832}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 3.2956409835475933}}, "branch_attrs": {"mutations": {"nuc": ["C11750T", "C15738T", "C21207T", "G25445T"]}}}]}, {"name": "NODE_0001860", "node_attrs": {"div": 29, "num_date": {"value": 2020.9435869954677, "confidence": [2020.7885168747594, 2021.036311224602]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD967794", "node_attrs": {"div": 31, "num_date": {"value": 2021.0753424657535, "confidence": [2021.0753424657535, 2021.0753424657535]}, "tsne_x": {"value": -17.019004326518253}, "umap_x": {"value": 17.344492}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.236888}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.729326629797344}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.839929588531184}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.186312232861627}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.55250351088504}, "mds3": {"value": -28.590496185978587}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6993788155887588}}, "branch_attrs": {"mutations": {"nuc": ["A11546G", "G29000T"]}}}, {"name": "NODE_0001861", "node_attrs": {"div": 29, "num_date": {"value": 2020.9693328075778, "confidence": [2020.7899840856348, 2021.0392053333073]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001862", "node_attrs": {"div": 29, "num_date": {"value": 2021.000991774258, "confidence": [2020.7889755316958, 2021.0432315972375]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX644522", "node_attrs": {"div": 33, "num_date": {"value": 2021.072602739726, "confidence": [2021.072602739726, 2021.072602739726]}, "tsne_x": {"value": -16.744791153611878}, "umap_x": {"value": 17.30575}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.260438}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 57.13449100585285}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.248570555031}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -6.201203998576217}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 23.83714582460455}, "mds3": {"value": -25.62739629902377}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.2711045035931984}}, "branch_attrs": {"mutations": {"nuc": ["C878T", "C6606T", "C12253T", "C18131T"]}}}, {"name": "OU205615", "node_attrs": {"div": 30, "num_date": {"value": 2021.2205479452055, "confidence": [2021.2205479452055, 2021.2205479452055]}, "tsne_x": {"value": -17.044425582238212}, "umap_x": {"value": 17.173191}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.116477}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.73318397963383}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.74755300897526}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.466591376199594}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.42063885231491}, "mds3": {"value": -27.470175581130515}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.696359692681138}}, "branch_attrs": {"mutations": {"nuc": ["G4508A"]}}}]}, {"name": "NODE_0001630", "node_attrs": {"div": 30, "num_date": {"value": 2021.0313019284586, "confidence": [2020.8570961648468, 2021.0977719426526]}}, "branch_attrs": {"mutations": {"nuc": ["G21974C"], "S": ["D138H"]}, "labels": {"aa": "S: D138H"}}, "children": [{"name": "BGD/ideSHi-S-06/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1191780821919, "confidence": [2021.1191780821919, 2021.1191780821919]}, "tsne_x": {"value": -16.82164350619777}, "umap_x": {"value": 17.403397}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.3954525}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.714508641910615}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.329639642262688}, "country": {"value": "Bangladesh"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.354275536239549}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Dhaka"}, "mds2": {"value": 22.656844114391387}, "mds3": {"value": -27.76729463395634}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7013874959607952}}, "branch_attrs": {"mutations": {"nuc": ["C2232T", "C10319T", "G29227T"]}}}, {"name": "NODE_0001672", "node_attrs": {"div": 30, "num_date": {"value": 2021.0665169998936, "confidence": [2020.8482307275574, 2021.173836520681]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001631", "node_attrs": {"div": 32, "num_date": {"value": 2021.1434974289666, "confidence": [2021.0096933426798, 2021.2763935544106]}}, "branch_attrs": {"mutations": {"nuc": ["C21855T", "A28295G"], "S": ["S98F"]}, "labels": {"aa": "S: S98F"}}, "children": [{"name": "USA/DE-CDC-LC0057963/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_x": {"value": -16.65104812241643}, "umap_x": {"value": 18.307028}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.499608}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.681153474481621}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.20819175284321}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.124253986281229}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Delaware"}, "mds2": {"value": 29.82971067142408}, "mds3": {"value": -28.47909606620328}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 13.565607555097133}}, "branch_attrs": {"mutations": {"nuc": ["C335T", "C9611T", "C10507T", "C14520T", "A27388-", "C27389-", "G27390-", "A27391-", "A27392-", "G28806T"]}}}, {"name": "IMS-10587-CVDP-F2AEC40B-1718-44F8-BDB2-21F1AB408926", "node_attrs": {"div": 38, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_x": {"value": -16.619068090158137}, "umap_x": {"value": 18.651537}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.880681}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.391637596396861}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.266607578906285}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.216141174519972}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": 24.9992926015004}, "mds3": {"value": -33.60839907164915}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -3.654560844661191}}, "branch_attrs": {"mutations": {"nuc": ["C6538T", "T14247C", "G19921A", "T22016C", "G24794T", "T27336G"], "S": ["W152R", "A1078S"]}, "labels": {"aa": "S: W152R, A1078S"}}}]}, {"name": "NODE_0001633", "node_attrs": {"div": 31, "num_date": {"value": 2021.1258028917212, "confidence": [2021.0721035556942, 2021.204911256198]}}, "branch_attrs": {"mutations": {"nuc": ["T23031C"], "S": ["F490S"]}, "labels": {"aa": "S: F490S"}}, "children": [{"name": "NODE_0001637", "node_attrs": {"div": 32, "num_date": {"value": 2021.1843157501023, "confidence": [2021.126751529346, 2021.263091751213]}}, "branch_attrs": {"mutations": {"nuc": ["C7299T"]}}, "children": [{"name": "KEN/SS1471/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.4424657534246, "confidence": [2021.4424657534246, 2021.4424657534246]}, "tsne_x": {"value": -16.63973751608983}, "umap_x": {"value": 17.442652}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.451725}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.8632089064497928}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.72649549210536}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.0167710148555291}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 22.989990759938824}, "mds3": {"value": -28.929912219086507}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 5.506921105322806}}, "branch_attrs": {"mutations": {"nuc": ["G26158-", "T26159-", "T26160-", "A26161-", "C27143T", "G28086T", "C29409T"]}}}, {"name": "KEN/C92035/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_x": {"value": -16.66175886782903}, "umap_x": {"value": 18.071495}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.186035}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.729323053035182}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.723355685188128}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.138207411277641}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 25.872445812728625}, "mds3": {"value": -28.980017221422067}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7283838376852622}}, "branch_attrs": {"mutations": {"nuc": ["C171T", "T22328G", "G29027T"], "S": ["S256A"]}, "labels": {"aa": "S: S256A"}}}]}, {"name": "NODE_0001867", "node_attrs": {"div": 31, "num_date": {"value": 2021.1436758134064, "confidence": [2021.0939615714863, 2021.2068493150684]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/CBRD62/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_x": {"value": -16.802126324301184}, "umap_x": {"value": 17.208141}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.161873}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.7993198361976144}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.37718393110522}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.89203138095505}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 20.480707480259493}, "mds3": {"value": -26.76232436980713}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 3.836364438885035}}, "branch_attrs": {"mutations": {"nuc": ["C6070T", "A27721G"]}}}, {"name": "NODE_0001868", "node_attrs": {"div": 31, "num_date": {"value": 2021.1680417582256, "confidence": [2021.1020784142033, 2021.2300062988613]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS7148/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2561643835616, "confidence": [2021.2561643835616, 2021.2561643835616]}, "tsne_x": {"value": -16.745103517549097}, "umap_x": {"value": 17.766788}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.82758}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.106504079396495}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.576713657901607}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.3691132808075097}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 22.001852864776005}, "mds3": {"value": -30.53618255048928}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.9756314403074429}}, "branch_attrs": {"mutations": {"nuc": ["C3593T", "C6040T", "C12880T"]}}}, {"name": "NODE_0001869", "node_attrs": {"div": 31, "num_date": {"value": 2021.2057992522941, "confidence": [2021.0835869757095, 2021.2991025078418]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C95837/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.354794520548, "confidence": [2021.354794520548, 2021.354794520548]}, "tsne_x": {"value": -16.680451918447726}, "umap_x": {"value": 17.063435}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.029853}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.246012193411012}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.22734118414997}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.31149559890874}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 21.29317780617922}, "mds3": {"value": -26.35975360325904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 3.5404112048649634}}, "branch_attrs": {"mutations": {"nuc": ["G12704A", "C23123T"], "S": ["P521S"]}, "labels": {"aa": "S: P521S"}}}, {"name": "KEN/C92996/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.305479452055, "confidence": [2021.305479452055, 2021.305479452055]}, "tsne_x": {"value": -16.75479887743935}, "umap_x": {"value": 17.096394}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.043755}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.061838802763182}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.32832502093489}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.1727061717807632}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 20.344558782333028}, "mds3": {"value": -27.02648892536937}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.5699157560806}}, "branch_attrs": {"mutations": {"nuc": ["A1395G", "C17766T"]}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001870", "node_attrs": {"div": 28, "num_date": {"value": 2020.9410791890139, "confidence": [2020.8602230814342, 2021.0528860532338]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001600", "node_attrs": {"div": 29, "num_date": {"value": 2021.069526834015, "confidence": [2020.92380178415, 2021.212654792697]}}, "branch_attrs": {"mutations": {"nuc": ["C7604T"]}}, "children": [{"name": "OU285895", "node_attrs": {"div": 34, "num_date": {"value": 2021.3602739726027, "confidence": [2021.3602739726027, 2021.3602739726027]}, "tsne_x": {"value": -16.985887867327722}, "umap_x": {"value": 17.922302}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.031436}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.720398830090436}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.45571874578049}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.67122493195449}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Scotland"}, "mds2": {"value": 18.990589108273483}, "mds3": {"value": -32.83292605752413}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7053612019690886}}, "branch_attrs": {"mutations": {"nuc": ["G370T", "C2453T", "C13059T", "C15654T", "G22927T"], "S": ["L455F"]}, "labels": {"aa": "S: L455F"}}}, {"name": "OU255473", "node_attrs": {"div": 34, "num_date": {"value": 2021.2890410958903, "confidence": [2021.2890410958903, 2021.2890410958903]}, "tsne_x": {"value": -17.334739689408504}, "umap_x": {"value": 17.954939}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.07076}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.723891375478583}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.43374074287234}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.026557039049202}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.56305833790413}, "mds3": {"value": -32.40579994635166}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6981618375713962}}, "branch_attrs": {"mutations": {"nuc": ["C12789T", "C12890T", "G17679T", "C26801T", "C27513T"]}}}]}, {"name": "NODE_0001872", "node_attrs": {"div": 28, "num_date": {"value": 2020.9923240017815, "confidence": [2020.8710566998284, 2021.0557712798327]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001873", "node_attrs": {"div": 28, "num_date": {"value": 2021.009522475162, "confidence": [2020.8766399796493, 2021.0571227901387]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001602", "node_attrs": {"div": 30, "num_date": {"value": 2021.1266648413348, "confidence": [2021.0029947663907, 2021.1858794941359]}}, "branch_attrs": {"mutations": {"nuc": ["G4255A", "G11507A"]}}, "children": [{"name": "Pakistan/UHS2-Pak-48/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3986301369864, 2021.3986301369864]}, "tsne_x": {"value": -16.805261707671086}, "umap_x": {"value": 17.034002}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.984718}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.99999838762129}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.916022252711823}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.1967088071630885}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Pakistan"}, "mds2": {"value": 15.599130785131536}, "mds3": {"value": -28.16124097118351}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6603458737427366}}, "branch_attrs": {"mutations": {"nuc": ["C1684T", "C10015T", "A25505G"]}}}, {"name": "NZL/21MV0258/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_x": {"value": -16.397958840733462}, "umap_x": {"value": 17.70623}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.74219}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 37.19516785782677}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.49811875854974}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -11.98215736262385}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 16.215202064758287}, "mds3": {"value": -31.28684334849132}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 3.486980022142947}}, "branch_attrs": {"mutations": {"nuc": ["C15963T", "G22205T", "C25433T", "G25445T", "C27434T"], "S": ["D215Y"]}, "labels": {"aa": "S: D215Y"}}}]}, {"name": "NODE_0001875", "node_attrs": {"div": 28, "num_date": {"value": 2021.019313061186, "confidence": [2020.8828479326844, 2021.0671232876712]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX553299", "node_attrs": {"div": 31, "num_date": {"value": 2021.0671232876712, "confidence": [2021.0671232876712, 2021.0671232876712]}, "tsne_x": {"value": -17.12859715410448}, "umap_x": {"value": 17.115606}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.075895}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 8.74244606886014}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.565241448093627}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.687591076692466}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Wales"}, "mds2": {"value": 19.612907231535083}, "mds3": {"value": -26.27916501336028}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -6.352612665494366}}, "branch_attrs": {"mutations": {"nuc": ["C14478T", "G17572T", "C21614T", "C27406-", "T27407-", "T27408-", "T27409-", "T27410-", "C27411-", "T27412-", "T27413-", "G27414-", "G27415-", "C27416-", "A27417-", "C27418-", "T27419-", "G27420-", "A27421-", "T27422-", "A27423-", "A27424-", "C27425-", "A27426-", "C27427-", "T27428-", "C27429-", "G27430-", "C27431-", "T27432-", "A27433-", "C27434-", "T27435-", "T27436-", "G27437-", "T27438-", "G27439-", "A27440-", "G27441-", "C27442-", "T27443-", "T27444-", "T27445-", "A27446-", "T27447-", "C27448-", "A27449-", "C27450-", "T27451-", "A27452-", "C27453-", "C27454-", "A27455-", "A27456-", "G27457-", "A27458-", "G27459-", "T27460-", "G27461-"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}, {"name": "NODE_0001604", "node_attrs": {"div": 29, "num_date": {"value": 2021.1437884835673, "confidence": [2021.0614867412157, 2021.2562859609413]}}, "branch_attrs": {"mutations": {"nuc": ["G17019T"]}}, "children": [{"name": "JPN/HiroC62c/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.3931506849315, "confidence": [2021.3931506849315, 2021.3931506849315]}, "tsne_x": {"value": -17.02217251262228}, "umap_x": {"value": 17.099201}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.055723}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.1026710419838}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.62061417575012}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.63750035866012}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Japan"}, "mds2": {"value": 19.513453319828404}, "mds3": {"value": -27.59430600161884}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -10.672123427042647}}, "branch_attrs": {"mutations": {"nuc": ["T18299C", "-28271A", "C29366T"]}}}, {"name": "NZL/21CH0023/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.313698630137, "confidence": [2021.313698630137, 2021.313698630137]}, "tsne_x": {"value": -16.85171946960542}, "umap_x": {"value": 17.338451}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.322721}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 54.47745564903749}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.63535744124599}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": -9.826824723539533}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 21.84193406753268}, "mds3": {"value": -26.20095583290697}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 4.428689267135634}}, "branch_attrs": {"mutations": {"nuc": ["T240C", "C11195T", "C12741T", "C17977T"]}}}]}]}]}, {"name": "NODE_0001877", "node_attrs": {"div": 28, "num_date": {"value": 2021.0284538128822, "confidence": [2020.9359710883207, 2021.1]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU090124", "node_attrs": {"div": 28, "num_date": {"value": 2021.1, "confidence": [2021.1, 2021.1]}, "tsne_x": {"value": -17.120125751236476}, "umap_x": {"value": 17.007832}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.954841}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.680490607546193}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.50469052734933}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.609214190173143}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 18.376680798355974}, "mds3": {"value": -26.0575643099715}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.110050741208831}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001878", "node_attrs": {"div": 28, "num_date": {"value": 2021.0669819413174, "confidence": [2020.9326383199543, 2021.121879831195]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001595", "node_attrs": {"div": 29, "num_date": {"value": 2021.1982611709107, "confidence": [2021.048216736315, 2021.3210437529826]}}, "branch_attrs": {"mutations": {"nuc": ["C11173T"]}}, "children": [{"name": "Japan/SZ-NIG-Y21652/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.5164383561644, "confidence": [2021.5164383561644, 2021.5164383561644]}, "tsne_x": {"value": -17.289293810653035}, "umap_x": {"value": 18.128649}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.281337}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.530392694520714}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 20.160008312799977}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.534771048154421}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Shizuoka"}, "mds2": {"value": 28.02103946753619}, "mds3": {"value": -28.026840909307}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -8.690027444312538}}, "branch_attrs": {"mutations": {"nuc": ["G443A", "C11074T", "C12880T", "G20160T", "C27741T", "C27942T", "C28112T"]}}}, {"name": "NZL/21CH0030/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.390410958904, "confidence": [2021.390410958904, 2021.390410958904]}, "tsne_x": {"value": -17.04691456557894}, "umap_x": {"value": 17.01734}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.968946}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 54.47895967627101}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.588784011302696}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": -7.134255240596437}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 20.052090867701345}, "mds3": {"value": -24.789775689078905}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 4.432383322588227}}, "branch_attrs": {"mutations": {"nuc": ["C2710T", "C24830T"], "S": ["P1090S"]}, "labels": {"aa": "S: P1090S"}}}]}, {"name": "NODE_0001880", "node_attrs": {"div": 28, "num_date": {"value": 2021.0662225694095, "confidence": [2020.9393721223937, 2021.132148374265]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/INSACOG-GBRC1373/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2150684931507, "confidence": [2021.2150684931507, 2021.2150684931507]}, "tsne_x": {"value": -17.812802845849006}, "umap_x": {"value": 18.236292}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.414869}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.0758092409815925}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.533735106365828}, "country": {"value": "India"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.426499252070371}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "India"}, "mds2": {"value": 22.666326926490584}, "mds3": {"value": -32.89929840656989}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -17.881017881905283}}, "branch_attrs": {"mutations": {"nuc": ["C119T", "C228T", "C13620T", "T15096C", "G16558T", "A18135C", "C20628T", "A27821T", "G29868T", "C29870A"]}}}, {"name": "NODE_0001881", "node_attrs": {"div": 28, "num_date": {"value": 2021.1244892151649, "confidence": [2020.9111925635468, 2021.2284602887526]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU279020", "node_attrs": {"div": 34, "num_date": {"value": 2021.3465753424657, "confidence": [2021.3465753424657, 2021.3465753424657]}, "tsne_x": {"value": -16.603022938233917}, "umap_x": {"value": 17.962149}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.065645}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.70646599809943}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.970009339123944}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.16666574902273}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.30641448882428}, "mds3": {"value": -32.77884902000919}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6995788011229098}}, "branch_attrs": {"mutations": {"nuc": ["A3600G", "T10003C", "G10193A", "A10195T", "C21216T", "C27577T"]}}}, {"name": "NODE_0001882", "node_attrs": {"div": 28, "num_date": {"value": 2021.1437626711827, "confidence": [2020.9247793376462, 2021.237291205326]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001883", "node_attrs": {"div": 28, "num_date": {"value": 2021.1515719989932, "confidence": [2020.9277180737058, 2021.2450765589442]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU155861", "node_attrs": {"div": 35, "num_date": {"value": 2021.3246575342466, "confidence": [2021.3246575342466, 2021.3246575342466]}, "tsne_x": {"value": -17.554465668840436}, "umap_x": {"value": 17.59923}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.651547}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.642821931726075}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.793785350025235}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.1100324120422696}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Mecklenburg-Vorpommern"}, "mds2": {"value": 25.61150612187278}, "mds3": {"value": -27.96971947369136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -7.409828806629818}}, "branch_attrs": {"mutations": {"nuc": ["T9139C", "C13554T", "G13770T", "A25910T", "G25954T", "C27389T", "A29170G"]}}}, {"name": "OX447027", "node_attrs": {"div": 35, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_x": {"value": -17.47393289554258}, "umap_x": {"value": 17.538939}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.576843}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.632322155971875}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.75173799890784}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.737771936954405}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Mecklenburg-Vorpommern"}, "mds2": {"value": 26.638785506225737}, "mds3": {"value": -25.866103824712813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 15.141748497636176}}, "branch_attrs": {"mutations": {"nuc": ["C6361T", "C12295T", "T14658A", "C23277T", "G25677T", "G26526T", "A29413G"], "S": ["T572I"]}, "labels": {"aa": "S: T572I"}}}]}, {"name": "NODE_0001884", "node_attrs": {"div": 28, "num_date": {"value": 2021.241319045318, "confidence": [2021.111023148952, 2021.3066607643652]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001885", "node_attrs": {"div": 28, "num_date": {"value": 2021.3217425901191, "confidence": [2021.144068361982, 2021.3246575342466]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y21110/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.3246575342466, "confidence": [2021.3246575342466, 2021.3246575342466]}, "tsne_x": {"value": -17.114813258937765}, "umap_x": {"value": 17.016476}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.96746}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.116156023356106}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.507475012426216}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.568461542188701}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Shizuoka"}, "mds2": {"value": 18.01592251199706}, "mds3": {"value": -24.81861159995563}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -7.254357781115625}}, "branch_attrs": {"mutations": {}}}, {"name": "OU303624", "node_attrs": {"div": 31, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3986301369864, 2021.3986301369864]}, "tsne_x": {"value": -17.15300376121284}, "umap_x": {"value": 17.377096}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.286297}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.73134480806097}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.51985085326247}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.977624598553582}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Scotland"}, "mds2": {"value": 18.986289052846946}, "mds3": {"value": -29.15945276710315}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.703448958103283}}, "branch_attrs": {"mutations": {"nuc": ["G25690T", "C27213T", "C27889T"]}}}]}, {"name": "NODE_0001591", "node_attrs": {"div": 29, "num_date": {"value": 2021.3160503746703, "confidence": [2021.204572972447, 2021.3164383561643]}}, "branch_attrs": {"mutations": {"nuc": ["T1292C"]}}, "children": [{"name": "Japan/SZ-NIG-Y21168/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.354794520548, "confidence": [2021.354794520548, 2021.354794520548]}, "tsne_x": {"value": -17.11091287636602}, "umap_x": {"value": 17.016846}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.967493}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.037182080623742}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.513089711440227}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.855548617821847}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Shizuoka"}, "mds2": {"value": 18.96416280021658}, "mds3": {"value": -26.04871200703061}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -3.485195138486664}}, "branch_attrs": {"mutations": {"nuc": ["C29250T"]}}}, {"name": "Japan/SZ-NIG-Y21120/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.3328767123287, "confidence": [2021.3328767123287, 2021.3328767123287]}, "tsne_x": {"value": -17.124635011066825}, "umap_x": {"value": 17.0259}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.980129}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.666636344189924}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.522407661703035}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.190766737242815}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Shizuoka"}, "mds2": {"value": 18.92188041456219}, "mds3": {"value": -26.57772347880279}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -5.145820536401447}}, "branch_attrs": {"mutations": {"nuc": ["G23009T"], "S": ["V483F"]}, "labels": {"aa": "S: V483F"}}}, {"name": "Japan/SZ-NIG-Y21095/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.3164383561643, "confidence": [2021.3164383561643, 2021.3164383561643]}, "tsne_x": {"value": -17.12261206852647}, "umap_x": {"value": 17.00124}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.951325}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.405398160112994}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.524315871028424}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.774295124248907}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Shizuoka"}, "mds2": {"value": 18.56082064325151}, "mds3": {"value": -25.55569281416424}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -8.318307109348702}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001545", "node_attrs": {"div": 29, "num_date": {"value": 2020.8177390637297, "confidence": [2020.700506422668, 2020.8374316939892]}}, "branch_attrs": {"mutations": {"nuc": ["A17615G"]}}, "children": [{"name": "OC997674", "node_attrs": {"div": 29, "num_date": {"value": 2020.8374316939892, "confidence": [2020.8374316939892, 2020.8374316939892]}, "tsne_x": {"value": -17.367223843820696}, "umap_x": {"value": 17.060986}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.0004225}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.733418456787707}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.61205005465781}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.989551942442351}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 18.832980778261472}, "mds3": {"value": -26.90194468492628}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6967357810117344}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001546", "node_attrs": {"div": 30, "num_date": {"value": 2020.859594401887, "confidence": [2020.6980951953378, 2020.9591239647254]}}, "branch_attrs": {"mutations": {"nuc": ["A12162G"]}}, "children": [{"name": "NODE_0001889", "node_attrs": {"div": 30, "num_date": {"value": 2020.8856757451147, "confidence": [2020.6992411007086, 2020.9664944060132]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001553", "node_attrs": {"div": 32, "num_date": {"value": 2020.9707511871388, "confidence": [2020.9199023392362, 2020.9931693989072]}}, "branch_attrs": {"mutations": {"nuc": ["A4964G", "G12032C"]}}, "children": [{"name": "NZL/21CV0065/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_x": {"value": -17.776512842719363}, "umap_x": {"value": 17.05974}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.007407}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.0711887367593351}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.76341883661281}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.78700079552784}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Auckland"}, "mds2": {"value": 16.108516859309166}, "mds3": {"value": -27.89385794249992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 2.459437875966644}}, "branch_attrs": {"mutations": {}}}, {"name": "OD926896", "node_attrs": {"div": 33, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -17.940811344847937}, "umap_x": {"value": 17.634935}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.658199}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.298337761906644}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.750130361882587}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.610998804481271}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 21.2438798293208}, "mds3": {"value": -28.93168402728812}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 16.276608694080824}}, "branch_attrs": {"mutations": {"nuc": ["C12488T"]}}}]}, {"name": "NODE_0001550", "node_attrs": {"div": 31, "num_date": {"value": 2020.9493509830088, "confidence": [2020.769245721878, 2021.033892524415]}}, "branch_attrs": {"mutations": {"nuc": ["T4744C"]}}, "children": [{"name": "NZL/21CH0026/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3164383561643, "confidence": [2021.3164383561643, 2021.3164383561643]}, "tsne_x": {"value": -18.85880820452096}, "umap_x": {"value": 18.475517}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.687319}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.53474397877094}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.816391710272256}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -2.796445710125214}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 31.089734164016967}, "mds3": {"value": -28.290757603403904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.722230367143518}}, "branch_attrs": {"mutations": {"nuc": ["C3382T", "C5907T", "A12410G", "G16197T", "G25537A", "C27737T", "C28748T"]}}}, {"name": "OU365716", "node_attrs": {"div": 34, "num_date": {"value": 2021.0671232876712, "confidence": [2021.0671232876712, 2021.0671232876712]}, "tsne_x": {"value": -18.30993003030916}, "umap_x": {"value": 17.699667}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.739632}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.419103715927103}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.8271524921771}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.182757858105804}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Baden-Wuerttemberg"}, "mds2": {"value": 19.64483930026397}, "mds3": {"value": -30.452405272751385}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -12.012413646087666}}, "branch_attrs": {"mutations": {"nuc": ["T1177C", "C10448T", "-11288T", "-11289C", "-11290T", "-11291G", "-11292G", "-11293T", "-11294T", "-11295T", "-11296T", "A17056G"]}}}]}]}, {"name": "NODE_0001892", "node_attrs": {"div": 30, "num_date": {"value": 2020.882897863987, "confidence": [2020.6982066967025, 2020.977538605557]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001893", "node_attrs": {"div": 30, "num_date": {"value": 2020.9382589255854, "confidence": [2020.6922665597801, 2021.002523099018]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0409/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3301369863013, "confidence": [2021.3301369863013, 2021.3301369863013]}, "tsne_x": {"value": -18.165768707753607}, "umap_x": {"value": 17.540497}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.610387}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.726945729397484}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.768374424852432}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.8118031294248845}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 21.938839622050367}, "mds3": {"value": -29.02015488561049}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6959943132736596}}, "branch_attrs": {"mutations": {"nuc": ["C6267T", "C6997T", "C8880T", "G19962T"]}}}, {"name": "NZL/21MV0112/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.141095890411, "confidence": [2021.141095890411, 2021.141095890411]}, "tsne_x": {"value": -18.850094274311303}, "umap_x": {"value": 18.654533}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.883315}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.53891714448001}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.96011026463057}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -11.962591531184534}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 22.95885000747483}, "mds3": {"value": -34.83822332875386}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.7414173224041425}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "T1452G", "G2764T", "G10870T", "G12176A", "T23042C", "A25136G", "C27549T"], "S": ["S494P", "N1192D"]}, "labels": {"aa": "S: S494P, N1192D"}}}]}, {"name": "NODE_0001547", "node_attrs": {"div": 33, "num_date": {"value": 2021.019454972912, "confidence": [2020.8556085890045, 2021.1374956115305]}}, "branch_attrs": {"mutations": {"nuc": ["C15720T", "A21137G", "G25135T"], "S": ["K1191N"]}, "labels": {"aa": "S: K1191N"}}, "children": [{"name": "USA/FL-BPHL-2376/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_x": {"value": -19.220566485671487}, "umap_x": {"value": 18.635885}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.862186}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.1332172400444172}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.619742121819712}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.3094989127556944}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Florida"}, "mds2": {"value": 32.39899795662837}, "mds3": {"value": -29.204207407889783}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.2073509553449864}}, "branch_attrs": {"mutations": {"nuc": ["G4444T", "C6213T", "A7705T", "G12685T", "T16444C", "C21588T", "C26509T"], "S": ["P9L"]}, "labels": {"aa": "S: P9L"}}}, {"name": "NODE_0001548", "node_attrs": {"div": 34, "num_date": {"value": 2021.0883088872808, "confidence": [2020.9144229314538, 2021.1773969967326]}}, "branch_attrs": {"mutations": {"nuc": ["C4900T"]}}, "children": [{"name": "USA/WI-CDC-ASC210068737/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.272602739726, "confidence": [2021.272602739726, 2021.272602739726]}, "tsne_x": {"value": -18.827504744210344}, "umap_x": {"value": 17.940727}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.054464}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.204518978338256}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.7539161146331}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.2381109011745193}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Wisconsin"}, "mds2": {"value": 26.87943873454413}, "mds3": {"value": -28.37930846237252}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -17.41410193846853}}, "branch_attrs": {"mutations": {"nuc": ["T597C", "T27447C"]}}}, {"name": "USA/MN-CDC-IBX035708908108/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.2287671232878, "confidence": [2021.2287671232878, 2021.2287671232878]}, "tsne_x": {"value": -19.18122578495269}, "umap_x": {"value": 18.766663}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 11.000701}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 31.40713818237059}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.77872418145881}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -8.793901405498204}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Minnesota"}, "mds2": {"value": 33.02827084237574}, "mds3": {"value": -29.52463616728746}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -12.23183811372052}}, "branch_attrs": {"mutations": {"nuc": ["G1379A", "C10834T", "C13730T", "C18570T", "C25169T", "G27217A"], "S": ["L1203F"]}, "labels": {"aa": "S: L1203F"}}}]}]}]}]}, {"name": "NODE_0001896", "node_attrs": {"div": 29, "num_date": {"value": 2020.8245467757163, "confidence": [2020.6963863180706, 2020.90279315422]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001572", "node_attrs": {"div": 30, "num_date": {"value": 2020.8604466116483, "confidence": [2020.7346694224793, 2020.9560534595303]}}, "branch_attrs": {"mutations": {"nuc": ["T8603C"]}}, "children": [{"name": "OD996707", "node_attrs": {"div": 38, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_x": {"value": -18.317243616249044}, "umap_x": {"value": 18.647453}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.87858}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.739827143616685}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.83748072317807}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.167410787379666}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 28.35387715970976}, "mds3": {"value": -32.02419112111208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.8009136292952873}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "A6672G", "A17409G", "G17523T", "A22161G", "C25549T", "C25901T", "G29778T"], "S": ["Y200C"]}, "labels": {"aa": "S: Y200C"}}}, {"name": "NODE_0001573", "node_attrs": {"div": 31, "num_date": {"value": 2020.9190417229631, "confidence": [2020.8154844182002, 2020.9734479522024]}}, "branch_attrs": {"mutations": {"nuc": ["G25437T"]}}, "children": [{"name": "NODE_0001899", "node_attrs": {"div": 31, "num_date": {"value": 2021.00936992775, "confidence": [2020.9346497431677, 2021.0780657308146]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD988692", "node_attrs": {"div": 31, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_x": {"value": -17.596034685862808}, "umap_x": {"value": 17.3423}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.267893}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.733698635638927}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.730852063057394}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.1174115656774966}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.751964747859336}, "mds3": {"value": -28.488660356743125}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6966345931981698}}, "branch_attrs": {"mutations": {}}}, {"name": "OD991267", "node_attrs": {"div": 33, "num_date": {"value": 2021.0890410958905, "confidence": [2021.0890410958905, 2021.0890410958905]}, "tsne_x": {"value": -17.878898386334715}, "umap_x": {"value": 17.684128}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.718282}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.733150964002352}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.872003211082767}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.097610381842902}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Northern Ireland"}, "mds2": {"value": 19.426456309470865}, "mds3": {"value": -31.362544280763807}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7104126653395856}}, "branch_attrs": {"mutations": {"nuc": ["C10376T", "A27894G"]}}}]}, {"name": "NODE_0001575", "node_attrs": {"div": 32, "num_date": {"value": 2020.9516963622355, "confidence": [2020.8692186709557, 2020.9874611763062]}}, "branch_attrs": {"mutations": {"nuc": ["C180T"]}}, "children": [{"name": "OD922029", "node_attrs": {"div": 35, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -18.1992832445332}, "umap_x": {"value": 18.109869}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.256847}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.735788310330316}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.13889021974768}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.927854863668006}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.91285363576453}, "mds3": {"value": -32.74864089264256}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7175674584998083}}, "branch_attrs": {"mutations": {"nuc": ["C1392T", "C16362T", "A24003G"], "S": ["K814R"]}, "labels": {"aa": "S: K814R"}}}, {"name": "OU019552", "node_attrs": {"div": 33, "num_date": {"value": 2021.1328767123289, "confidence": [2021.1328767123289, 2021.1328767123289]}, "tsne_x": {"value": -17.89551460884779}, "umap_x": {"value": 17.710316}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.746141}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.735922503784738}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.90496001431972}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.890926331353796}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.86860748218455}, "mds3": {"value": -31.193575686924696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7164925791886725}}, "branch_attrs": {"mutations": {"nuc": ["G14500T"]}}}]}]}]}, {"name": "NODE_0001901", "node_attrs": {"div": 29, "num_date": {"value": 2020.8431719956313, "confidence": [2020.6980385432416, 2020.9050307279322]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001561", "node_attrs": {"div": 30, "num_date": {"value": 2020.9189551386717, "confidence": [2020.7988525971552, 2021.031881332401]}}, "branch_attrs": {"mutations": {"nuc": ["G26730C"]}}, "children": [{"name": "OD939964", "node_attrs": {"div": 33, "num_date": {"value": 2021.0342465753424, "confidence": [2021.0342465753424, 2021.0342465753424]}, "tsne_x": {"value": -17.890959090779653}, "umap_x": {"value": 17.71618}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.756777}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.722351600710388}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.84047547370449}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.516575374394817}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.5373448622946}, "mds3": {"value": -30.41631089745041}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7018103073414553}}, "branch_attrs": {"mutations": {"nuc": ["C4719T", "A17823G", "G29227A"]}}}, {"name": "NODE_0001903", "node_attrs": {"div": 30, "num_date": {"value": 2020.9510907274334, "confidence": [2020.8042900348437, 2021.0364007784246]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001904", "node_attrs": {"div": 30, "num_date": {"value": 2020.9926159524998, "confidence": [2020.8044704307947, 2021.1206225568862]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/SEC-0350L/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_x": {"value": -18.22134108117571}, "umap_x": {"value": 17.862394}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.952018}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 53.6655416474425}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.206828004280727}, "country": {"value": "Colombia"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -5.760809097877361}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Colombia"}, "mds2": {"value": 26.37977579593656}, "mds3": {"value": -27.42028555611508}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -3.427501386305493}}, "branch_attrs": {"mutations": {"nuc": ["C14599T", "G18105T", "C26947T", "C27641T", "C29754T"]}}}, {"name": "OU271399", "node_attrs": {"div": 36, "num_date": {"value": 2021.3219178082193, "confidence": [2021.3219178082193, 2021.3219178082193]}, "tsne_x": {"value": -18.481325488782545}, "umap_x": {"value": 18.283718}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.464937}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.732453115516928}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.3856199114924}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.45797240230669}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.67650924114686}, "mds3": {"value": -34.635598719341466}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7012946529019309}}, "branch_attrs": {"mutations": {"nuc": ["C6432T", "C16391T", "C17676T", "C22687T", "G25785T", "C29109A"]}}}]}, {"name": "NODE_0001564", "node_attrs": {"div": 31, "num_date": {"value": 2021.009420037091, "confidence": [2020.8956744094473, 2021.0424657534247]}}, "branch_attrs": {"mutations": {"nuc": ["G20962A"]}}, "children": [{"name": "USA/CA-CDC-STM-000003173/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0424657534247, "confidence": [2021.0424657534247, 2021.0424657534247]}, "tsne_x": {"value": -17.76324603825724}, "umap_x": {"value": 17.017694}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.968308}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 29.33215301342713}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.811429196473128}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -3.864171270883869}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "California"}, "mds2": {"value": 18.35473158016668}, "mds3": {"value": -24.99241793534897}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -10.33551449205144}}, "branch_attrs": {"mutations": {"nuc": ["A136G"]}}}, {"name": "NODE_0001565", "node_attrs": {"div": 36, "num_date": {"value": 2021.1855141390222, "confidence": [2021.1263915015336, 2021.2412798329815]}}, "branch_attrs": {"mutations": {"nuc": ["G5023A", "C6568T", "A9529G", "G10396T", "G22094C"], "S": ["D178H"]}, "labels": {"aa": "S: D178H"}}, "children": [{"name": "USA/ALTCOV-VPTJSTZUPRYVYTEC/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2890410958903, "confidence": [2021.2890410958903, 2021.2890410958903]}, "tsne_x": {"value": -18.99594801562466}, "umap_x": {"value": 18.573568}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.794671}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.048006885992648}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "Q.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.87340946837966}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.225976537320306}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "USA"}, "mds2": {"value": 24.832059534982623}, "mds3": {"value": -36.006826658558474}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -6.968219132190463}}, "branch_attrs": {"mutations": {"nuc": ["A9922C", "C28093T", "C28905T"]}}}, {"name": "NODE_0001907", "node_attrs": {"div": 36, "num_date": {"value": 2021.2068363161243, "confidence": [2021.1537602012638, 2021.2479452054795]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-UW-2021040102339/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_x": {"value": -18.91026669338084}, "umap_x": {"value": 18.353954}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.547773}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.766747097810113}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "Q.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.788195962090263}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.6034044068303}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Washington"}, "mds2": {"value": 28.300085550717544}, "mds3": {"value": -29.394205432992702}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 28.913834264362265}}, "branch_attrs": {"mutations": {"nuc": ["A10323G"]}}}, {"name": "NODE_0001908", "node_attrs": {"div": 36, "num_date": {"value": 2021.2417354967295, "confidence": [2021.1601310927117, 2021.3]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-UW-21042004171/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3, "confidence": [2021.3, 2021.3]}, "tsne_x": {"value": -18.906155432803235}, "umap_x": {"value": 18.00799}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.134834}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.767955180118689}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "Q.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.783173798381032}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.00800664060152}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Washington"}, "mds2": {"value": 29.09636357889919}, "mds3": {"value": -27.034409424162305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 28.915281136405607}}, "branch_attrs": {"mutations": {"nuc": ["C1710T"]}}}, {"name": "USA/CA-CDC-ASC210109990/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_x": {"value": -19.016571643523854}, "umap_x": {"value": 18.771292}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 11.005793}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 41.13230601350775}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "Q.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.899336456820546}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -9.815942831083436}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "California"}, "mds2": {"value": 26.481549302518733}, "mds3": {"value": -36.08277130040148}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -10.99910385233157}}, "branch_attrs": {"mutations": {"nuc": ["G4504T", "G6404T", "C6843T", "G22093C"], "S": ["M177I"]}, "labels": {"aa": "S: M177I"}}}]}]}]}]}]}]}, {"name": "NODE_0001909", "node_attrs": {"div": 29, "num_date": {"value": 2020.8553696272447, "confidence": [2020.701418353778, 2020.908696540762]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU804897", "node_attrs": {"div": 33, "num_date": {"value": 2020.938524590164, "confidence": [2020.938524590164, 2020.938524590164]}, "tsne_x": {"value": -17.826790110642772}, "umap_x": {"value": 17.417595}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.419242}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.44345937500241}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.769038566249883}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.350725773134271}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.13537752520649}, "mds3": {"value": -29.670485150000538}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -12.680773721426556}}, "branch_attrs": {"mutations": {"nuc": ["C4573T", "A9935G", "C22224T", "G26428T"], "S": ["S221L"]}, "labels": {"aa": "S: S221L"}}}, {"name": "NODE_0001910", "node_attrs": {"div": 29, "num_date": {"value": 2020.877389190346, "confidence": [2020.6975146509942, 2020.9735190363456]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001578", "node_attrs": {"div": 30, "num_date": {"value": 2020.9380456996066, "confidence": [2020.800400608039, 2020.9898543113081]}}, "branch_attrs": {"mutations": {"nuc": ["C19854T"]}}, "children": [{"name": "OD926708", "node_attrs": {"div": 32, "num_date": {"value": 2021.004109589041, "confidence": [2021.004109589041, 2021.004109589041]}, "tsne_x": {"value": -17.668339848276595}, "umap_x": {"value": 17.596354}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.59759}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.733353933812522}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.72842176405562}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.44758634185365}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.72397215957204}, "mds3": {"value": -30.02603726891512}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.696842672140006}}, "branch_attrs": {"mutations": {"nuc": ["C3924T", "C14697T"]}}}, {"name": "NODE_0001912", "node_attrs": {"div": 30, "num_date": {"value": 2020.950898080924, "confidence": [2020.8066614386871, 2021.0035711605992]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0079/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0123287671233, "confidence": [2021.0123287671233, 2021.0123287671233]}, "tsne_x": {"value": -17.61389010203396}, "umap_x": {"value": 17.00577}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.9556055}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.2293318960344443}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.78176926046354}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.629501255006434}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Auckland"}, "mds2": {"value": 15.291184289305937}, "mds3": {"value": -26.51231774303795}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 2.8113535579244004}}, "branch_attrs": {"mutations": {"nuc": ["T25356C", "C28725T"], "S": ["L1265P"]}, "labels": {"aa": "S: L1265P"}}}, {"name": "NZL/21MV0372/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3109589041096, "confidence": [2021.3109589041096, 2021.3109589041096]}, "tsne_x": {"value": -18.33852685851626}, "umap_x": {"value": 18.327387}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.52466}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.734590921039824}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.58310537979596}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.55283679131796}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 21.825908922158685}, "mds3": {"value": -34.74488043239084}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6960431784049508}}, "branch_attrs": {"mutations": {"nuc": ["C4158T", "A8845G", "C13424A", "A14791G", "C17304T", "A19079G", "T21579C"], "S": ["V6A"]}, "labels": {"aa": "S: V6A"}}}]}]}, {"name": "NODE_0001913", "node_attrs": {"div": 29, "num_date": {"value": 2020.9022533189896, "confidence": [2020.7786894750104, 2020.9646304207456]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD927968", "node_attrs": {"div": 31, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_x": {"value": -17.529181944098262}, "umap_x": {"value": 17.273748}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.24297}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.73023542583346}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.67426328073317}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.939423104135012}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.71599735672006}, "mds3": {"value": -28.5359941412737}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6979585437514064}}, "branch_attrs": {"mutations": {"nuc": ["A3569G", "T5293C"]}}}, {"name": "NODE_0001914", "node_attrs": {"div": 29, "num_date": {"value": 2020.9407230655977, "confidence": [2020.8031161563504, 2020.9886440078105]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD922378", "node_attrs": {"div": 30, "num_date": {"value": 2020.99043715847, "confidence": [2020.99043715847, 2020.99043715847]}, "tsne_x": {"value": -17.43834169958108}, "umap_x": {"value": 17.134401}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.06434}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.730377057542379}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.618398564726736}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.431803035810206}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.221616490010565}, "mds3": {"value": -27.86909623401019}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6992248489287334}}, "branch_attrs": {"mutations": {"nuc": ["A8689C"]}}}, {"name": "NODE_0001915", "node_attrs": {"div": 29, "num_date": {"value": 2020.9509995237565, "confidence": [2020.7811702488534, 2021.0449166460157]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001916", "node_attrs": {"div": 29, "num_date": {"value": 2020.9913477767402, "confidence": [2020.7773676122686, 2021.0534246575342]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD953594", "node_attrs": {"div": 29, "num_date": {"value": 2021.0534246575342, "confidence": [2021.0534246575342, 2021.0534246575342]}, "tsne_x": {"value": -17.449937377792143}, "umap_x": {"value": 17.170208}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.110956}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.739403492950985}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.58943028745841}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.578300865945954}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.12593212494601}, "mds3": {"value": -27.63295918135837}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7398494087209304}}, "branch_attrs": {"mutations": {"nuc": ["A28254-"]}}}, {"name": "NODE_0001917", "node_attrs": {"div": 29, "num_date": {"value": 2021.0086500576053, "confidence": [2020.7780766884055, 2021.0749102741318]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU018785", "node_attrs": {"div": 34, "num_date": {"value": 2021.1328767123289, "confidence": [2021.1328767123289, 2021.1328767123289]}, "tsne_x": {"value": -18.07220460262646}, "umap_x": {"value": 17.921993}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.028005}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.731106526294103}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.752324787068645}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.605015114992112}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.687180400380225}, "mds3": {"value": -31.453222489650155}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6986643835816568}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "A1588G", "C13119T", "T18231C", "C18252T"]}}}, {"name": "NODE_0001918", "node_attrs": {"div": 29, "num_date": {"value": 2021.031161756691, "confidence": [2020.7785286875046, 2021.0925098532462]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU306799", "node_attrs": {"div": 39, "num_date": {"value": 2021.4068493150685, "confidence": [2021.4068493150685, 2021.4068493150685]}, "tsne_x": {"value": -18.955840409879617}, "umap_x": {"value": 18.750042}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.983819}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.720548944456071}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.33772454003343}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.491255097036024}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Scotland"}, "mds2": {"value": 24.53204031276898}, "mds3": {"value": -36.04937685155076}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6252721106730871}}, "branch_attrs": {"mutations": {"nuc": ["T400C", "T786A", "C2704T", "C4543T", "G8084A", "C11497T", "C27881T", "C28708A", "A29526G", "T29789A"]}}}, {"name": "OU095791", "node_attrs": {"div": 34, "num_date": {"value": 2021.1739726027397, "confidence": [2021.1739726027397, 2021.1739726027397]}, "tsne_x": {"value": -18.04048646299736}, "umap_x": {"value": 17.473171}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.47353}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.007496215261647}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.91309517186419}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.6452562673639735}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Saxony-Anhalt"}, "mds2": {"value": 18.091602405259216}, "mds3": {"value": -30.70603877726569}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -14.836168500970851}}, "branch_attrs": {"mutations": {"nuc": ["G688A", "A17627G", "C21846T", "C27643T", "G28903T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}}]}]}]}, {"name": "NODE_0001919", "node_attrs": {"div": 29, "num_date": {"value": 2020.9925501756804, "confidence": [2020.7767069513475, 2021.0439202682974]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU097681", "node_attrs": {"div": 35, "num_date": {"value": 2021.1794520547944, "confidence": [2021.1794520547944, 2021.1794520547944]}, "tsne_x": {"value": -18.197052487766413}, "umap_x": {"value": 17.215862}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.186445}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.347717900289743}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.67485493139864}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.245968998194081}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Hamburg"}, "mds2": {"value": 25.511781542914257}, "mds3": {"value": -23.18795216400032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 13.688492849218084}}, "branch_attrs": {"mutations": {"nuc": ["C10189T", "C13378T", "C21622T", "-21765T", "-21766A", "T21771-", "C21772-", "C22432T", "T23866C", "G28209C"], "S": ["X68I", "X70-", "X1274*"]}, "labels": {"aa": "S: X68I, X70-, X1274*"}}}, {"name": "NODE_0001920", "node_attrs": {"div": 29, "num_date": {"value": 2021.0005255747205, "confidence": [2020.7794805877331, 2021.0513554529348]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GMB/6823/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.072602739726, "confidence": [2021.072602739726, 2021.072602739726]}, "tsne_x": {"value": -17.652939647803727}, "umap_x": {"value": 17.30101}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.2654085}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.731306337361482}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.711859270347656}, "country": {"value": "Gambia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.519470205326178}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Gambia"}, "mds2": {"value": 20.433630112912752}, "mds3": {"value": -28.424191893703505}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6978573054648586}}, "branch_attrs": {"mutations": {"nuc": ["T1165C", "T7919C", "A29373G"]}}}, {"name": "NODE_0001580", "node_attrs": {"div": 31, "num_date": {"value": 2021.079385652857, "confidence": [2021.0398334112729, 2021.114106169714]}}, "branch_attrs": {"mutations": {"nuc": ["C16468T", "T17009G"]}}, "children": [{"name": "NODE_0001922", "node_attrs": {"div": 31, "num_date": {"value": 2021.1164383561643, "confidence": [2021.080534876427, 2021.1164383561643]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0062/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.1164383561643, "confidence": [2021.1164383561643, 2021.1164383561643]}, "tsne_x": {"value": -17.560688476330693}, "umap_x": {"value": 17.131878}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.086223}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.734024066622291}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.67710669861612}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.272078272430808}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 19.61692831062976}, "mds3": {"value": -27.46567043042991}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.698300220748685}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0099/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_x": {"value": -17.564320496077467}, "umap_x": {"value": 17.131443}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.087445}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.4682333202619455}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.675381098683246}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.96108585965716}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 19.556769983973915}, "mds3": {"value": -27.531222162177293}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 11.725978811532975}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001582", "node_attrs": {"div": 32, "num_date": {"value": 2021.1164383561643, "confidence": [2021.0985300615248, 2021.1164383561643]}}, "branch_attrs": {"mutations": {"nuc": ["C29296T"]}}, "children": [{"name": "NZL/21MV0107/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1575342465753, "confidence": [2021.1575342465753, 2021.1575342465753]}, "tsne_x": {"value": -17.69254882327539}, "umap_x": {"value": 17.343363}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.309572}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.540337264738128}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.70370263629165}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.687704175346617}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 20.056034166895497}, "mds3": {"value": -28.987496787596488}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 12.192549050691143}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0093/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.141095890411, "confidence": [2021.141095890411, 2021.141095890411]}, "tsne_x": {"value": -17.78261342116744}, "umap_x": {"value": 17.288912}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.247202}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.97672155274288}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.68371258481433}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.221738947934535}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 18.394037679349005}, "mds3": {"value": -29.523808565253063}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 14.094263157403098}}, "branch_attrs": {"mutations": {"nuc": ["G22225T"]}}}, {"name": "NZL/21MV0085/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_x": {"value": -17.664290176654987}, "umap_x": {"value": 17.100792}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.057712}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.669463914771479}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.687788922891475}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.7511300832937269}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 19.26491794463492}, "mds3": {"value": -27.382690012664888}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 12.738791418163576}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0086/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_x": {"value": -17.653522306201744}, "umap_x": {"value": 17.112501}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.07279}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.938609456475672}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.629530515003665}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.070124406416051}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 20.046129831551653}, "mds3": {"value": -26.316089977303296}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 19.81212441755645}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0063/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1164383561643, "confidence": [2021.1164383561643, 2021.1164383561643]}, "tsne_x": {"value": -17.569775922912562}, "umap_x": {"value": 17.218515}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.17022}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.73363590255739}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.68001815741}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.022026013408615}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 19.92339829079371}, "mds3": {"value": -27.791752370075184}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6978368630422602}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001641", "node_attrs": {"div": 29, "num_date": {"value": 2020.7995789267302, "confidence": [2020.6977244164536, 2020.8726916527924]}}, "branch_attrs": {"mutations": {"nuc": ["A28095T"]}}, "children": [{"name": "NODE_0001734", "node_attrs": {"div": 29, "num_date": {"value": 2020.818172139057, "confidence": [2020.6976466764497, 2020.8729316441952]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD907951", "node_attrs": {"div": 31, "num_date": {"value": 2020.8811475409836, "confidence": [2020.8811475409836, 2020.8811475409836]}, "tsne_x": {"value": -16.907814899272648}, "umap_x": {"value": 17.258278}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.163473}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.732608592268647}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.09660678621267}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.489792166363732}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.68042893617671}, "mds3": {"value": -28.741091057337616}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7294944520546179}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "A27061G"]}}}, {"name": "NODE_0001925", "node_attrs": {"div": 29, "num_date": {"value": 2020.8243585254704, "confidence": [2020.698261089197, 2020.9352715932437]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001648", "node_attrs": {"div": 30, "num_date": {"value": 2020.8653277803494, "confidence": [2020.7489173809502, 2020.9522791069753]}}, "branch_attrs": {"mutations": {"nuc": ["A1643T", "A28254-"]}}, "children": [{"name": "NODE_0001927", "node_attrs": {"div": 30, "num_date": {"value": 2020.8931900729199, "confidence": [2020.7478994360777, 2020.9882087486499]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Pakistan/UHS2-Pak-176/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4150684931508, "confidence": [2021.4150684931508, 2021.4150684931508]}, "tsne_x": {"value": -18.33871469207658}, "umap_x": {"value": 18.207966}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.384196}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.4127419431114876}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.108571506011845}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -12.838630766920636}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Pakistan"}, "mds2": {"value": 17.15486111365821}, "mds3": {"value": -34.040437353873}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.758532212074939}}, "branch_attrs": {"mutations": {"nuc": ["C2395T", "C4668T", "C5806T", "A12298G", "C18695A", "T19305C", "G25302T", "C26885T"], "S": ["C1247F"]}, "labels": {"aa": "S: C1247F"}}}, {"name": "OD972386", "node_attrs": {"div": 35, "num_date": {"value": 2021.0479452054794, "confidence": [2021.0479452054794, 2021.0479452054794]}, "tsne_x": {"value": -17.868608805229503}, "umap_x": {"value": 18.275404}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.457011}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.739088218946913}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.49425253582641}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.108582728920474}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 21.40518460951939}, "mds3": {"value": -34.36464779004153}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7722243333315677}}, "branch_attrs": {"mutations": {"nuc": ["G370T", "C13119T", "G22022A", "T24022C", "C27503T"], "S": ["E154K"]}, "labels": {"aa": "S: E154K"}}}]}, {"name": "NODE_0001650", "node_attrs": {"div": 31, "num_date": {"value": 2020.9184250503704, "confidence": [2020.800474279225, 2020.9615095311572]}}, "branch_attrs": {"mutations": {"nuc": ["T28245G"]}}, "children": [{"name": "OD959770", "node_attrs": {"div": 33, "num_date": {"value": 2020.9631147540983, "confidence": [2020.9631147540983, 2020.9631147540983]}, "tsne_x": {"value": -17.61670371605646}, "umap_x": {"value": 17.953894}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.063818}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.733125298196481}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.625478902227183}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.537873002488814}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.399421097544167}, "mds3": {"value": -32.566744536621854}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.770397957572875}}, "branch_attrs": {"mutations": {"nuc": ["G695T", "C4582T"]}}}, {"name": "NODE_0001929", "node_attrs": {"div": 31, "num_date": {"value": 2020.9391141719027, "confidence": [2020.798335771609, 2020.98371093268]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OX472802", "node_attrs": {"div": 35, "num_date": {"value": 2021.058904109589, "confidence": [2021.058904109589, 2021.058904109589]}, "tsne_x": {"value": -17.665418307257948}, "umap_x": {"value": 17.769966}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.842679}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.226195228165637}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.50582621779053}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.6675800583271}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 23.651224143800103}, "mds3": {"value": -30.078020024484363}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -14.029224726983667}}, "branch_attrs": {"mutations": {"nuc": ["C2306T", "G3328T", "G20002T", "G26416T"]}}}, {"name": "NODE_0001930", "node_attrs": {"div": 31, "num_date": {"value": 2020.950430306328, "confidence": [2020.8039498226142, 2021.0379210892195]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU059420", "node_attrs": {"div": 38, "num_date": {"value": 2021.182191780822, "confidence": [2021.182191780822, 2021.182191780822]}, "tsne_x": {"value": -18.39311815420796}, "umap_x": {"value": 18.750929}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.984725}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.725375423973178}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.067200016023712}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.56731326307695}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 23.697938989025868}, "mds3": {"value": -37.42580665373082}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7716083176234616}}, "branch_attrs": {"mutations": {"nuc": ["T4693A", "A7921G", "C20402T", "C24237T", "A25501G", "C27389T", "C27494T"], "S": ["A892V"]}, "labels": {"aa": "S: A892V"}}}, {"name": "Pakistan/UHS2-Pak-63/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4260273972602, "confidence": [2021.4260273972602, 2021.4260273972602]}, "tsne_x": {"value": -18.397120315009417}, "umap_x": {"value": 18.75402}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.988473}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.08265233383276}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.138151090495796}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.00086699352616}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Pakistan"}, "mds2": {"value": 26.16533890578938}, "mds3": {"value": -34.62681401894171}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -5.267925393085496}}, "branch_attrs": {"mutations": {"nuc": ["C6401T", "C9073T", "G9425T", "G15543T", "C15951T", "C16726T", "C25614T"]}}}]}]}]}]}, {"name": "NODE_0001931", "node_attrs": {"div": 29, "num_date": {"value": 2020.8505495866887, "confidence": [2020.6900884798106, 2020.948152187061]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001932", "node_attrs": {"div": 29, "num_date": {"value": 2020.8729822332384, "confidence": [2020.690452327003, 2020.9990168506497]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001646", "node_attrs": {"div": 33, "num_date": {"value": 2020.9924717927618, "confidence": [2020.8826365014236, 2021.0601785745]}}, "branch_attrs": {"mutations": {"nuc": ["C4784T", "C6968T", "C16887T", "C23664T"], "S": ["A701V"]}, "labels": {"aa": "S: A701V"}}, "children": [{"name": "Brazil/BR-MG-UW21021150992/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_x": {"value": -18.12405152807385}, "umap_x": {"value": 18.579998}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.803246}, "region": {"value": "South America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.860335433269029}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.613440873638503}, "country": {"value": "Brazil"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.4302326871654994}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Brazil"}, "mds2": {"value": 31.840428454551656}, "mds3": {"value": -29.88836236543736}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 29.26838870049512}}, "branch_attrs": {"mutations": {"nuc": ["C1101T", "C7604T", "G12566T", "C21530G", "T21534A", "G21535T", "A21536C"]}}}, {"name": "Switzerland/SZ-ETHZ-521033/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_x": {"value": -17.716118948934273}, "umap_x": {"value": 17.811163}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.905159}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.962435363460306}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.1877204879198}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.6494453967629611}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Schwyz"}, "mds2": {"value": 21.8964723471783}, "mds3": {"value": -32.13805294688455}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -4.90979788973748}}, "branch_attrs": {"mutations": {"nuc": ["T1948C", "C17676T", "-28271A"]}}}]}, {"name": "NODE_0001934", "node_attrs": {"div": 29, "num_date": {"value": 2020.9410589137503, "confidence": [2020.6420621875582, 2021.0616438356165]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD962240", "node_attrs": {"div": 30, "num_date": {"value": 2021.0616438356165, "confidence": [2021.0616438356165, 2021.0616438356165]}, "tsne_x": {"value": -16.920029172524504}, "umap_x": {"value": 17.14181}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.070613}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.722955703827891}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.139558962304257}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.068887416768196}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 19.338392296293907}, "mds3": {"value": -27.73394070682368}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7640159453968854}}, "branch_attrs": {"mutations": {"nuc": ["A27156T"]}}}, {"name": "NODE_0001935", "node_attrs": {"div": 29, "num_date": {"value": 2020.9930805408023, "confidence": [2020.6390835936645, 2021.0756902751298]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU017691", "node_attrs": {"div": 33, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_x": {"value": -16.790148712034167}, "umap_x": {"value": 17.693705}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.730283}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.7314087473485005}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.05862259619688}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.595561969237011}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.87896551245822}, "mds3": {"value": -30.57136328518412}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7347897882398976}}, "branch_attrs": {"mutations": {"nuc": ["C874T", "C9870T", "C11020T", "G13897T"]}}}, {"name": "OU423567", "node_attrs": {"div": 37, "num_date": {"value": 2021.2753424657535, "confidence": [2021.2753424657535, 2021.2753424657535]}, "tsne_x": {"value": -17.991453070404926}, "umap_x": {"value": 18.203732}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.38322}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.75264971914761}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.376742402321504}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.59570184026727}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 27.43460641040653}, "mds3": {"value": -28.804286166355112}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.119501739017331}}, "branch_attrs": {"mutations": {"nuc": ["C6255T", "C10369T", "A14031C", "C16575T", "A16609G", "T18417C", "G25126T", "G28904T"], "S": ["E1188D"]}, "labels": {"aa": "S: E1188D"}}}]}]}]}, {"name": "NODE_0001654", "node_attrs": {"div": 30, "num_date": {"value": 2020.8833441916136, "confidence": [2020.7829534874243, 2020.9541075227137]}}, "branch_attrs": {"mutations": {"nuc": ["C14120T"]}}, "children": [{"name": "NGA/BCVL-24264/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_x": {"value": -16.1352093731527}, "umap_x": {"value": 17.687176}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.73069}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.748444389341947}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.13049644585073}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.449507879945806}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Oyo State"}, "mds2": {"value": 22.29110746117496}, "mds3": {"value": -29.32531185556562}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.8432726242191005}}, "branch_attrs": {"mutations": {"nuc": ["C3777A", "G7042T", "G26062T"]}}}, {"name": "NODE_0001655", "node_attrs": {"div": 31, "num_date": {"value": 2020.9184027472036, "confidence": [2020.8562458873494, 2020.9568733614233]}}, "branch_attrs": {"mutations": {"nuc": ["C2110T"]}}, "children": [{"name": "NODE_0001662", "node_attrs": {"div": 32, "num_date": {"value": 2020.960073585718, "confidence": [2020.888707752797, 2021.007395444953]}}, "branch_attrs": {"mutations": {"nuc": ["G7042T"]}}, "children": [{"name": "NODE_0001669", "node_attrs": {"div": 34, "num_date": {"value": 2021.0692586259358, "confidence": [2021.0120972156672, 2021.0873296472457]}}, "branch_attrs": {"mutations": {"nuc": ["A2563G", "G5992A"]}}, "children": [{"name": "KEN/C98721/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_x": {"value": -15.41911370745963}, "umap_x": {"value": 17.804802}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.894522}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.670220154440533}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.02730719336436}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.5634550624669115}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 25.23304591987674}, "mds3": {"value": -29.29579516575356}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 2.01470967678526}}, "branch_attrs": {"mutations": {"nuc": ["C15656T", "G28936T"]}}}, {"name": "KEN/SS252/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.0890410958905, "confidence": [2021.0890410958905, 2021.0890410958905]}, "tsne_x": {"value": -15.587403930532458}, "umap_x": {"value": 17.709633}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.768547}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.0227460053815791}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.059265523103186}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.734763219051679}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 22.725048182407985}, "mds3": {"value": -29.993749512131128}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 2.3941405973689207}}, "branch_attrs": {"mutations": {"nuc": ["C25521T"]}}}]}, {"name": "NODE_0001940", "node_attrs": {"div": 32, "num_date": {"value": 2020.991796561886, "confidence": [2020.8895084227443, 2021.0145465604487]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001941", "node_attrs": {"div": 32, "num_date": {"value": 2021.0008704981174, "confidence": [2020.8949357850797, 2021.0205479452054]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-18420/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_x": {"value": -15.839848688561837}, "umap_x": {"value": 17.590622}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.619749}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.7438805134964666}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.092079026861448}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.264760873143043}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Oyo State"}, "mds2": {"value": 22.53844868063187}, "mds3": {"value": -29.23895929018728}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.8446446702119906}}, "branch_attrs": {"mutations": {"nuc": ["G6421T"]}}}, {"name": "NODE_0001663", "node_attrs": {"div": 34, "num_date": {"value": 2021.143128949974, "confidence": [2021.0723924013407, 2021.213992819549]}}, "branch_attrs": {"mutations": {"nuc": ["A10195G", "G28075T"]}}, "children": [{"name": "USA/MD-MDH-1856/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2671232876712, "confidence": [2021.2671232876712, 2021.2671232876712]}, "tsne_x": {"value": -15.34238778155958}, "umap_x": {"value": 18.025541}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.160589}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.460265203836385}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.125443387623687}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.8434552805761064}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Maryland"}, "mds2": {"value": 24.52154693943813}, "mds3": {"value": -31.19466082372192}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -4.706222729338293}}, "branch_attrs": {"mutations": {"nuc": ["C9979T", "T29727G"]}}}, {"name": "USA/MI-MDHHS-SC27333/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2287671232878, "confidence": [2021.2287671232878, 2021.2287671232878]}, "tsne_x": {"value": -15.109847120483185}, "umap_x": {"value": 17.413937}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.423328}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.662049084924308}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.392237007600272}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.573986907814767}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Michigan"}, "mds2": {"value": 26.10844186112056}, "mds3": {"value": -24.27399564806128}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -2.2637335653579536}}, "branch_attrs": {"mutations": {"nuc": ["G19816T", "G28056A", "-28271A"]}}}]}]}, {"name": "NODE_0001943", "node_attrs": {"div": 32, "num_date": {"value": 2021.0091055958458, "confidence": [2020.888634810906, 2021.1166244841636]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PAK/JRCGR_SCV-96_MARDAN-07/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.1876712328767, "confidence": [2021.1876712328767, 2021.1876712328767]}, "tsne_x": {"value": -15.585912666321168}, "umap_x": {"value": 18.002619}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.135287}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.914912627466844}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.043279863766102}, "country": {"value": "Pakistan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.638398117252396}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Pakistan"}, "mds2": {"value": 23.436508186874224}, "mds3": {"value": -31.56644058273773}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -3.4455028389758984}}, "branch_attrs": {"mutations": {"nuc": ["G3955T", "C14621T", "T18465C"]}}}, {"name": "NODE_0001944", "node_attrs": {"div": 32, "num_date": {"value": 2021.031348433956, "confidence": [2020.8903079784973, 2021.120539569952]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-24383/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_x": {"value": -15.38367604959828}, "umap_x": {"value": 17.83575}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.954935}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.741263003337905}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.040133600557297}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.2289657305348969}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Oyo State"}, "mds2": {"value": 25.35819888188017}, "mds3": {"value": -29.985325330332223}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.8441200535667411}}, "branch_attrs": {"mutations": {"nuc": ["A1051G", "G20102T", "C25487T", "G25489T"]}}}, {"name": "NODE_0001945", "node_attrs": {"div": 32, "num_date": {"value": 2021.065831226887, "confidence": [2020.8869238857671, 2021.1296904027988]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CT-CDC-QDX23177444/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.217808219178, "confidence": [2021.217808219178, 2021.217808219178]}, "tsne_x": {"value": -15.220987351328228}, "umap_x": {"value": 18.44734}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.648378}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.72406741609489}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.802750347699284}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.446846457140498}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Connecticut"}, "mds2": {"value": 26.17362111842257}, "mds3": {"value": -32.54107685119987}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7355443016129731}}, "branch_attrs": {"mutations": {"nuc": ["C1060T", "T1384C", "C12400T", "C13378T", "C17762T"]}}}, {"name": "USA/NY-PV35567/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2150684931507, "confidence": [2021.2150684931507, 2021.2150684931507]}, "tsne_x": {"value": -15.588259436039818}, "umap_x": {"value": 18.025862}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.160728}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.667086100749732}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.04232096669689}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.87438655565637}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "USA"}, "mds2": {"value": 23.552664190244645}, "mds3": {"value": -31.60674464733739}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 12.993972502401654}}, "branch_attrs": {"mutations": {"nuc": ["C15588T", "G24415T", "C27208T"]}}}]}]}]}]}]}, {"name": "NODE_0001677", "node_attrs": {"div": 32, "num_date": {"value": 2020.9439574533567, "confidence": [2020.9156822126936, 2020.9668738239866]}}, "branch_attrs": {"mutations": {"nuc": ["C19390T"]}}, "children": [{"name": "USA/PA-M21060309/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4397260273972, "confidence": [2021.4397260273972, 2021.4397260273972]}, "tsne_x": {"value": -14.548223493862984}, "umap_x": {"value": 18.806173}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 11.040985}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.1958100846151485}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.971167953222896}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.720546280238066}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Pennsylvania"}, "mds2": {"value": 31.24924828601275}, "mds3": {"value": -32.34888272023778}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -3.559003760668885}}, "branch_attrs": {"mutations": {"nuc": ["C1594T", "G4504T", "C6843T", "C8880T", "C10456T", "A13712G", "C21742T", "G29745T"]}}}, {"name": "USA/FL-CDC-STM-187/2020", "node_attrs": {"div": 34, "num_date": {"value": 2020.9986338797814, "confidence": [2020.9986338797814, 2020.9986338797814]}, "tsne_x": {"value": -15.695083000623866}, "umap_x": {"value": 17.092777}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.0568905}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.324363468570957}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.149388477425536}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.8333950762308153}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Florida"}, "mds2": {"value": 21.142209121838743}, "mds3": {"value": -25.812589639808387}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -11.082983887628806}}, "branch_attrs": {"mutations": {"nuc": ["C843T", "G12769T"]}}}, {"name": "NODE_0001679", "node_attrs": {"div": 33, "num_date": {"value": 2020.9767759562842, "confidence": [2020.9532834342428, 2020.9767759562842]}}, "branch_attrs": {"mutations": {"nuc": ["T7984C"]}}, "children": [{"name": "GHA/nmimr-SARS-CoV-2-NTRA-14902/2020", "node_attrs": {"div": 33, "num_date": {"value": 2020.9767759562842, "confidence": [2020.9767759562842, 2020.9767759562842]}, "tsne_x": {"value": -15.784317175864498}, "umap_x": {"value": 17.459435}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.46359}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.622199714201282}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.16320568559679}, "country": {"value": "Ghana"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.394928759522354}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Ghana"}, "mds2": {"value": 22.570592645899755}, "mds3": {"value": -28.28793542967812}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -19.06744953639378}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001761", "node_attrs": {"div": 33, "num_date": {"value": 2021.0068493150684, "confidence": [2020.9742372380135, 2021.0068493150684]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GHA/WACCBIP_nCoV_GS156/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.0068493150684, "confidence": [2021.0068493150684, 2021.0068493150684]}, "tsne_x": {"value": -15.58762096777237}, "umap_x": {"value": 17.019453}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.97088}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.165646901915095}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.422589929415512}, "country": {"value": "Ghana"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.996588822214637}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Ghana"}, "mds2": {"value": 19.46367371762022}, "mds3": {"value": -23.753918094199555}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 6.471064933341909}}, "branch_attrs": {"mutations": {"nuc": ["-21994T"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "NODE_0001948", "node_attrs": {"div": 33, "num_date": {"value": 2021.0797466761526, "confidence": [2020.9874081574105, 2021.1671526419025]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GHA/nmimr-SARS-CoV-2-TRA-21-6360/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.1931506849314, "confidence": [2021.1931506849314, 2021.1931506849314]}, "tsne_x": {"value": -15.571660589081956}, "umap_x": {"value": 18.058628}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.195384}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.583457600753336}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.21919982329817}, "country": {"value": "Ghana"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.08568485439521}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Ghana"}, "mds2": {"value": 24.027016346765183}, "mds3": {"value": -31.211253807781887}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 5.165766036236779}}, "branch_attrs": {"mutations": {"nuc": ["T21333C", "A27315G"]}}}, {"name": "NODE_0001949", "node_attrs": {"div": 33, "num_date": {"value": 2021.1240404317616, "confidence": [2021.0151905564321, 2021.1931081186876]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001950", "node_attrs": {"div": 33, "num_date": {"value": 2021.1490532648577, "confidence": [2021.0928615127284, 2021.2054214542077]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-MDHHS-SC29857/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_x": {"value": -15.184736231074195}, "umap_x": {"value": 17.577534}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.626409}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.664997662054908}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.44703053751657}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.8087924100441408}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Michigan"}, "mds2": {"value": 24.830476636456307}, "mds3": {"value": -28.098231078225048}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -3.634932449753681}}, "branch_attrs": {"mutations": {"nuc": ["C6401T", "-11290T", "-11291A", "-11292G", "-11293T", "-11294T", "-11295T", "-11296G", "-28271A"]}}}, {"name": "GMB/22740/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_x": {"value": -15.827476893514165}, "umap_x": {"value": 17.083534}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.039114}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 60.97533469498487}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.09186528057282}, "country": {"value": "Gambia"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -5.809826101775045}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Gambia"}, "mds2": {"value": 21.67993696291979}, "mds3": {"value": -24.3782992481738}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 5.341308318620782}}, "branch_attrs": {"mutations": {"nuc": ["G28857T"]}}}]}, {"name": "NODE_0001951", "node_attrs": {"div": 33, "num_date": {"value": 2021.1404814329974, "confidence": [2021.0242655356142, 2021.1994014504367]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-CDC-ASC210043901/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2534246575342, "confidence": [2021.2534246575342, 2021.2534246575342]}, "tsne_x": {"value": -15.852841408833136}, "umap_x": {"value": 17.10542}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.064391}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 46.841783152451086}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.359821065247058}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "mds1": {"value": -2.9155125471546377}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Michigan"}, "mds2": {"value": 22.81853812304106}, "mds3": {"value": -25.781234900874203}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 12.269871162047652}}, "branch_attrs": {"mutations": {"nuc": ["G7042A", "C17977T", "T28095A"]}}}, {"name": "NODE_0001952", "node_attrs": {"div": 33, "num_date": {"value": 2021.148979589259, "confidence": [2021.0321640096088, 2021.2147248102503]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-CDC-STM-000072768/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_x": {"value": -15.016085939087503}, "umap_x": {"value": 18.319698}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.51352}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.855825643421493}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.382658608783217}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.0887914673123361}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Florida"}, "mds2": {"value": 28.540727899259096}, "mds3": {"value": -29.9658415081584}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -6.423490222109635}}, "branch_attrs": {"mutations": {"nuc": ["G923A", "C4668T", "G8024A", "G21830T", "C26907T"], "S": ["V90F"]}, "labels": {"aa": "S: V90F"}}}, {"name": "USA/PR-CDC-2-4193777/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_x": {"value": -15.372042217752654}, "umap_x": {"value": 18.131908}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.28203}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.317613246421482}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.243626336272687}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.078687790323446}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Puerto Rico"}, "mds2": {"value": 23.809247990729475}, "mds3": {"value": -32.12599969942164}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -11.584059119223287}}, "branch_attrs": {"mutations": {"nuc": ["C10747T", "C17004T", "T27939C", "C29363T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0001953", "node_attrs": {"div": 31, "num_date": {"value": 2020.9437872027856, "confidence": [2020.8830383375855, 2021.017808219178]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-18510/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.017808219178, "confidence": [2021.017808219178, 2021.017808219178]}, "tsne_x": {"value": -16.192993880622296}, "umap_x": {"value": 17.299974}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.2352085}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.75052349732298}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.12472152910456}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.931264766932994}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Oyo State"}, "mds2": {"value": 20.889656915915577}, "mds3": {"value": -27.77231024094626}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.8436459042478238}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001954", "node_attrs": {"div": 31, "num_date": {"value": 2020.9909992902783, "confidence": [2020.8770417385408, 2021.036450452599]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-23154/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.1054794520549, "confidence": [2021.1054794520549, 2021.1054794520549]}, "tsne_x": {"value": -15.67343851636338}, "umap_x": {"value": 18.03057}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.182769}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.630380203703548}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.06379075201988}, "country": {"value": "Nigeria"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.49398095264105}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Oyo State"}, "mds2": {"value": 24.304620677683147}, "mds3": {"value": -30.404107574119983}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.8007981485629184}}, "branch_attrs": {"mutations": {"nuc": ["C7101T", "G22205T", "C25132G", "C25463T"], "S": ["D215Y"]}, "labels": {"aa": "S: D215Y"}}}, {"name": "NODE_0001955", "node_attrs": {"div": 31, "num_date": {"value": 2021.0184168570404, "confidence": [2020.874451741581, 2021.123006557469]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001673", "node_attrs": {"div": 34, "num_date": {"value": 2021.0999037421363, "confidence": [2021.0432554496417, 2021.1612327121022]}}, "branch_attrs": {"mutations": {"nuc": ["C2544T", "C12809T", "T26604C"]}}, "children": [{"name": "NODE_0001675", "node_attrs": {"div": 35, "num_date": {"value": 2021.1712328767123, "confidence": [2021.1340560352874, 2021.1712328767123]}}, "branch_attrs": {"mutations": {"nuc": ["C1263T"]}}, "children": [{"name": "NZL/21MV0156/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.1712328767123, "confidence": [2021.1712328767123, 2021.1712328767123]}, "tsne_x": {"value": -15.137084841310845}, "umap_x": {"value": 17.653563}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.709471}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.669766480627041}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.78570746081391}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.1084319021363281}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 24.35578941849337}, "mds3": {"value": -28.556481277765453}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7059444043255896}}, "branch_attrs": {"mutations": {"nuc": ["-21994T"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "NZL/21MV0154/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.1712328767123, "confidence": [2021.1712328767123, 2021.1712328767123]}, "tsne_x": {"value": -15.302615039555253}, "umap_x": {"value": 18.096506}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.2270155}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.676955047934766}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.800975884160703}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.702239748740173}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 24.91880072233557}, "mds3": {"value": -30.4029048775132}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7869757170104785}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001773", "node_attrs": {"div": 34, "num_date": {"value": 2021.1257525267613, "confidence": [2021.0463602931525, 2021.165649925356]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0183/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.1849315068494, "confidence": [2021.1849315068494, 2021.1849315068494]}, "tsne_x": {"value": -15.003356860051715}, "umap_x": {"value": 18.281725}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.466889}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.528287824357214}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.692357836021742}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -4.7755253232850094}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 27.831376639909248}, "mds3": {"value": -30.198821939096806}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.753942972485219}}, "branch_attrs": {"mutations": {"nuc": ["A2440C", "C3411T", "C26044G"]}}}, {"name": "NODE_0001778", "node_attrs": {"div": 34, "num_date": {"value": 2021.1436602046813, "confidence": [2021.05175747626, 2021.1832502318607]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0307/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_x": {"value": -15.134593276423832}, "umap_x": {"value": 18.13107}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.279872}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.731235718268138}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.73367644113459}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.058592959310272}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 24.62114129129232}, "mds3": {"value": -31.53281818221389}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7307657200730648}}, "branch_attrs": {"mutations": {"nuc": ["C5310T", "T27940C"]}}}, {"name": "NZL/21MV0231/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2205479452055, "confidence": [2021.2205479452055, 2021.2205479452055]}, "tsne_x": {"value": -14.993780415050791}, "umap_x": {"value": 18.331413}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.524793}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.732594924490699}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.672722443981584}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.831372955039125}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 27.08729563025184}, "mds3": {"value": -31.206355164235568}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7357953368435851}}, "branch_attrs": {"mutations": {"nuc": ["C11653T", "A23796G", "C24863T"], "S": ["D745G", "H1101Y"]}, "labels": {"aa": "S: D745G, H1101Y"}}}]}]}]}, {"name": "NODE_0001958", "node_attrs": {"div": 31, "num_date": {"value": 2021.0412175519791, "confidence": [2020.85362741392, 2021.1167461863724]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU028201", "node_attrs": {"div": 34, "num_date": {"value": 2021.1520547945206, "confidence": [2021.1520547945206, 2021.1520547945206]}, "tsne_x": {"value": -15.81268518879962}, "umap_x": {"value": 17.8989}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.000677}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.731980882059723}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.091975681263527}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.136059481758767}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 22.368860058806924}, "mds3": {"value": -31.401158089100644}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7338695523136355}}, "branch_attrs": {"mutations": {"nuc": ["C6040T", "A13715G", "C15540T"]}}}, {"name": "NODE_0001959", "node_attrs": {"div": 31, "num_date": {"value": 2021.0822325000797, "confidence": [2020.8426608395694, 2021.1758211774502]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001671", "node_attrs": {"div": 33, "num_date": {"value": 2021.2059969659085, "confidence": [2021.083384491681, 2021.2518440501046]}}, "branch_attrs": {"mutations": {"nuc": ["C12525T", "T27462C"]}}, "children": [{"name": "USA/NJ-CDC-LC0070481/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.4205479452055, "confidence": [2021.4205479452055, 2021.4205479452055]}, "tsne_x": {"value": -15.633325694177168}, "umap_x": {"value": 17.950071}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.068734}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.282038553802698}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.01495424082804}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.116645674061723}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Jersey"}, "mds2": {"value": 24.72480028917824}, "mds3": {"value": -29.87873148881009}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.7109233525422316}}, "branch_attrs": {"mutations": {"nuc": ["C4763T", "A13566G"]}}}, {"name": "USA/TN-CDC-ASC210047252/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_x": {"value": -15.624940524181914}, "umap_x": {"value": 18.1209}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.264157}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.557228046317993}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.03949265755019}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.561322778649533}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Tennessee"}, "mds2": {"value": 24.086449782753256}, "mds3": {"value": -30.95334481294915}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -18.66697150109746}}, "branch_attrs": {"mutations": {"nuc": ["C2488T", "C12114T"]}}}]}, {"name": "NODE_0001961", "node_attrs": {"div": 31, "num_date": {"value": 2021.1051907733101, "confidence": [2020.8437950100167, 2021.1849315068494]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU098315", "node_attrs": {"div": 34, "num_date": {"value": 2021.1849315068494, "confidence": [2021.1849315068494, 2021.1849315068494]}, "tsne_x": {"value": -15.7953377963262}, "umap_x": {"value": 17.277758}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.250484}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.460169391919296}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.0529180723479}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.83433230312678}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": 23.200043194274407}, "mds3": {"value": -26.28630514312294}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 14.70985402089452}}, "branch_attrs": {"mutations": {"nuc": ["A3383C", "C5175T", "C21304T"]}}}, {"name": "NODE_0001962", "node_attrs": {"div": 31, "num_date": {"value": 2021.1426949216398, "confidence": [2020.8422483081529, 2021.20395874277]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/DC-DFS-PHL-0478/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3164383561643, "confidence": [2021.3164383561643, 2021.3164383561643]}, "tsne_x": {"value": -14.907827993557945}, "umap_x": {"value": 18.141565}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.30309}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 38.07365530899198}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.19952254478416}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -3.8166387384449663}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Washington DC"}, "mds2": {"value": 29.20349747495172}, "mds3": {"value": -27.879305992685943}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -1.8825195146721057}}, "branch_attrs": {"mutations": {"nuc": ["G2782T", "C4456T", "C16393T", "C25366T", "G27459T", "A29687T"]}}}, {"name": "USA/MA-CDCBI-CRSP_O52KVHNEIQ5CVN4S/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.354794520548, "confidence": [2021.354794520548, 2021.354794520548]}, "tsne_x": {"value": -15.544267631105097}, "umap_x": {"value": 17.516897}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.560401}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.986864378896911}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.09301644191526}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.1498292203903442}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Massachusetts"}, "mds2": {"value": 23.318356546434465}, "mds3": {"value": -28.164018292441625}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -12.189089288397655}}, "branch_attrs": {"mutations": {"nuc": ["C5979T", "C10728T", "G22661C", "G25691A"], "S": ["V367L"]}, "labels": {"aa": "S: V367L"}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001686", "node_attrs": {"div": 30, "num_date": {"value": 2020.8526858568705, "confidence": [2020.7908598663955, 2020.9355730932573]}}, "branch_attrs": {"mutations": {"nuc": ["T15096C"]}}, "children": [{"name": "NODE_0001713", "node_attrs": {"div": 32, "num_date": {"value": 2020.9433924569194, "confidence": [2020.865219118071, 2021.0944010536807]}}, "branch_attrs": {"mutations": {"nuc": ["C19164T", "C25096T"]}}, "children": [{"name": "Japan/SZ-NIG-Y21135/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.3301369863013, "confidence": [2021.3301369863013, 2021.3301369863013]}, "tsne_x": {"value": -15.613774947987109}, "umap_x": {"value": 18.707191}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.93845}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.071582040667044}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.59085552102311}, "country": {"value": "Japan"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.9845007439967588}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Shizuoka"}, "mds2": {"value": 31.079166087977736}, "mds3": {"value": -32.23758871139353}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -3.708052474053981}}, "branch_attrs": {"mutations": {"nuc": ["C2048T", "C2146T", "G4904T", "C20429T", "C21077T", "C23557T", "G26763T", "G27676T"]}}}, {"name": "OU260507", "node_attrs": {"div": 41, "num_date": {"value": 2021.3027397260273, "confidence": [2021.3027397260273, 2021.3027397260273]}, "tsne_x": {"value": -17.322448803775874}, "umap_x": {"value": 18.728214}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.962407}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.737841571939796}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 15.995838817734104}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -11.805290965552482}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 31.00912105073517}, "mds3": {"value": -33.454628518784936}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.9932177809851366}}, "branch_attrs": {"mutations": {"nuc": ["C8327T", "C13487T", "C20930T", "T22555C", "G25471T", "C25611A", "C26447T", "T27502C", "C27739T"]}}}]}, {"name": "NODE_0001965", "node_attrs": {"div": 30, "num_date": {"value": 2020.877539414585, "confidence": [2020.799282998933, 2020.941256830601]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OD906655", "node_attrs": {"div": 32, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_x": {"value": -16.828288502605652}, "umap_x": {"value": 17.474134}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.475604}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.732068448111651}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.733727709425743}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.847382215370415}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 20.75940251390652}, "mds3": {"value": -29.49946042724208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7337897807261436}}, "branch_attrs": {"mutations": {"nuc": ["T606C", "C25521T"]}}}, {"name": "NODE_0001966", "node_attrs": {"div": 30, "num_date": {"value": 2020.9204157042102, "confidence": [2020.7624242012146, 2021.0301629067596]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001967", "node_attrs": {"div": 30, "num_date": {"value": 2020.9439248157892, "confidence": [2020.7591841292349, 2021.148909163351]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001694", "node_attrs": {"div": 31, "num_date": {"value": 2021.079712045405, "confidence": [2020.8262011102117, 2021.2201427004234]}}, "branch_attrs": {"mutations": {"nuc": ["C7299T"]}}, "children": [{"name": "USA/TG974033/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4835616438356, "confidence": [2021.4835616438356, 2021.4835616438356]}, "tsne_x": {"value": -15.427180499440148}, "umap_x": {"value": 18.619717}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.847322}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 30.6109845465695}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.699995722541512}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": 2.453121208652172}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Arizona"}, "mds2": {"value": 31.239040020867883}, "mds3": {"value": -30.989338876255168}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -10.36334101292768}}, "branch_attrs": {"mutations": {"nuc": ["A3776G", "C5310T", "C11345T", "C11750T", "C12049T", "G16207T", "G17516A", "-21994T", "G24040T", "G26589C", "G27463T"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "USA/CO-CDPHE-2101284104/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4205479452055, "confidence": [2021.4205479452055, 2021.4205479452055]}, "tsne_x": {"value": -17.292829628627352}, "umap_x": {"value": 18.368923}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.564617}, "region": {"value": "North America"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.725011933679329}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.94404199805133}, "country": {"value": "USA"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.928243699268592}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "USA"}, "mds2": {"value": 23.86575144475599}, "mds3": {"value": -34.866125490232555}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7427086302967778}}, "branch_attrs": {"mutations": {"nuc": ["G3308A", "G14118T", "C21077T", "C23029T", "A28877T", "G28878C"]}}}]}, {"name": "NODE_0001687", "node_attrs": {"div": 31, "num_date": {"value": 2021.0228330718187, "confidence": [2020.8473960408817, 2021.1714465211721]}}, "branch_attrs": {"mutations": {"nuc": ["G28884C"]}}, "children": [{"name": "NODE_0001970", "node_attrs": {"div": 31, "num_date": {"value": 2021.0561086342036, "confidence": [2020.8475389555033, 2021.1704828076538]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU367870", "node_attrs": {"div": 34, "num_date": {"value": 2021.1876712328767, "confidence": [2021.1876712328767, 2021.1876712328767]}, "tsne_x": {"value": -17.084830584290497}, "umap_x": {"value": 17.31103}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.267219}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 13.455763043690531}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 18.03397320724482}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -9.233822718164989}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Baden-Wuerttemberg"}, "mds2": {"value": 21.18154155786016}, "mds3": {"value": -26.73698321077148}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -10.325903381730988}}, "branch_attrs": {"mutations": {"nuc": ["C8986T", "T28095A", "A28880G"]}}}, {"name": "NODE_0001971", "node_attrs": {"div": 31, "num_date": {"value": 2021.0820576653434, "confidence": [2020.848242034781, 2021.1744190008726]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU178535", "node_attrs": {"div": 35, "num_date": {"value": 2021.286301369863, "confidence": [2021.286301369863, 2021.286301369863]}, "tsne_x": {"value": -16.98416096066063}, "umap_x": {"value": 18.083315}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.225823}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.922637696935087}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "Q.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.38559510358123}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.449106390920884}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Germany"}, "mds2": {"value": 22.21043879164729}, "mds3": {"value": -32.34871242990917}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -6.434349695335278}}, "branch_attrs": {"mutations": {"nuc": ["C5672T", "C12049T", "A17337G", "T18018C"]}}}, {"name": "OU137946", "node_attrs": {"div": 39, "num_date": {"value": 2021.2397260273972, "confidence": [2021.2397260273972, 2021.2397260273972]}, "tsne_x": {"value": -15.5605700722134}, "umap_x": {"value": 18.721367}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.954358}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.57185422968816}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.28911170343132}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.400511054033793}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Germany"}, "mds2": {"value": 27.967142725404763}, "mds3": {"value": -34.2046929727274}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -5.252748381282668}}, "branch_attrs": {"mutations": {"nuc": ["C912T", "C2607A", "G6527C", "T7771C", "C13264T", "T17967C", "C19263T", "C28725T"]}}}]}]}, {"name": "NODE_0001690", "node_attrs": {"div": 32, "num_date": {"value": 2021.0885158397575, "confidence": [2020.909155844874, 2021.172891637053]}}, "branch_attrs": {"mutations": {"nuc": ["C5944T"]}}, "children": [{"name": "OU131170", "node_attrs": {"div": 37, "num_date": {"value": 2021.231506849315, "confidence": [2021.231506849315, 2021.231506849315]}, "tsne_x": {"value": -17.211846442757327}, "umap_x": {"value": 18.31139}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.504731}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.495242543696143}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.86895836637454}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.522206247085694}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "North Rhine Westphalia"}, "mds2": {"value": 28.24695696146525}, "mds3": {"value": -29.65111701260476}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -4.765382468593276}}, "branch_attrs": {"mutations": {"nuc": ["G8572T", "C10186T", "G11083T", "C12025T", "T19530C"]}}}, {"name": "NODE_0001973", "node_attrs": {"div": 32, "num_date": {"value": 2021.12492767616, "confidence": [2020.9094516832067, 2021.1804286180907]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Switzerland/ZH-UZH-IMV-3ba49771/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3876712328768, "confidence": [2021.3876712328768, 2021.3876712328768]}, "tsne_x": {"value": -15.7078809243127}, "umap_x": {"value": 17.67015}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.732366}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.75009588139339}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.767938935160714}, "country": {"value": "Switzerland"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.541239791140612}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Z\u00fcrich"}, "mds2": {"value": 23.822201082557395}, "mds3": {"value": -29.20653185544317}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -5.692817751008074}}, "branch_attrs": {"mutations": {"nuc": ["-21994T", "C25714T", "G27506T", "G29744T"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "NODE_0001974", "node_attrs": {"div": 32, "num_date": {"value": 2021.1427080812648, "confidence": [2020.9114692988278, 2021.1925533483607]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU252448", "node_attrs": {"div": 38, "num_date": {"value": 2021.2835616438356, "confidence": [2021.2835616438356, 2021.2835616438356]}, "tsne_x": {"value": -17.35184184335308}, "umap_x": {"value": 18.678427}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.911169}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.737209299971062}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.583729268488096}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.289073903918666}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 24.159655479045902}, "mds3": {"value": -35.877006214025066}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7335468727949619}}, "branch_attrs": {"mutations": {"nuc": ["C6286T", "T12169A", "G14126A", "C23415T", "C25162T", "T27616C"], "S": ["T618I"]}, "labels": {"aa": "S: T618I"}}}, {"name": "IMS-10215-CVDP-7E127B61-0C8E-412B-87A2-8E0437D929D7", "node_attrs": {"div": 36, "num_date": {"value": 2021.2835616438356, "confidence": [2021.2835616438356, 2021.2835616438356]}, "tsne_x": {"value": -16.795679818884196}, "umap_x": {"value": 17.663095}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.689931}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.797841863996099}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.88845323998266}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.761136783060794}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": 17.853780143671166}, "mds3": {"value": -30.59212296060601}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 13.69058479039639}}, "branch_attrs": {"mutations": {"nuc": ["T5986C", "A11793G", "C14931T", "C15240T", "-21992T", "-21993A", "-21994T"], "S": ["-144Y"]}, "labels": {"aa": "S: -144Y"}}}]}]}]}]}]}, {"name": "NODE_0001975", "node_attrs": {"div": 30, "num_date": {"value": 2020.93667741228, "confidence": [2020.7653722752982, 2021.035246130898]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001715", "node_attrs": {"div": 32, "num_date": {"value": 2021.0659675631723, "confidence": [2020.9307915887773, 2021.1370601978547]}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "A11830G"]}}, "children": [{"name": "KEN/SS3050/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_x": {"value": -16.421238059148642}, "umap_x": {"value": 18.113668}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.252291}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.7153230192575055}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.301488465256575}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.798582166535568}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 26.140078893061773}, "mds3": {"value": -30.14175281505408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7332162040706826}}, "branch_attrs": {"mutations": {"nuc": ["C7267T", "A22525G", "C25916T", "C29171T"]}}}, {"name": "NODE_0001977", "node_attrs": {"div": 32, "num_date": {"value": 2021.1264533389779, "confidence": [2020.9124207185025, 2021.2071739271848]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C92034/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_x": {"value": -16.53777339038316}, "umap_x": {"value": 17.170101}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.13284}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.969097165225105}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.60845603398777}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -3.6940091382618414}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 21.428080422104845}, "mds3": {"value": -26.732410872734384}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 3.356111942652788}}, "branch_attrs": {"mutations": {"nuc": ["G27676T"]}}}, {"name": "NODE_0001978", "node_attrs": {"div": 32, "num_date": {"value": 2021.1433482682044, "confidence": [2020.9177666141302, 2021.2172941659153]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS7168/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2808219178082, "confidence": [2021.2808219178082, 2021.2808219178082]}, "tsne_x": {"value": -16.211687384468647}, "umap_x": {"value": 18.29523}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.484368}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.001419241836052}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.075231846536692}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.059081133314567}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 20.38022682660923}, "mds3": {"value": -35.72086276109515}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.767102065593718}}, "branch_attrs": {"mutations": {"nuc": ["A6524G", "C6730T", "T7096A", "A11160G", "C25000T"]}}}, {"name": "KEN/C94189/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.3219178082193, "confidence": [2021.3219178082193, 2021.3219178082193]}, "tsne_x": {"value": -16.352462261368732}, "umap_x": {"value": 17.340538}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.328079}, "region": {"value": "Africa"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.2964219414183939}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.62940784620371}, "country": {"value": "Kenya"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.0788681780217217}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Kenya"}, "mds2": {"value": 22.12946242315879}, "mds3": {"value": -28.03808909645272}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 3.4391819799558765}}, "branch_attrs": {"mutations": {"nuc": ["G15780A", "A17277G", "G18055A", "G23311T"], "S": ["E583D"]}, "labels": {"aa": "S: E583D"}}}]}]}]}, {"name": "NODE_0001979", "node_attrs": {"div": 30, "num_date": {"value": 2020.9513368699209, "confidence": [2020.768384129867, 2021.0428812813157]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001724", "node_attrs": {"div": 31, "num_date": {"value": 2021.0091491300568, "confidence": [2020.870196373158, 2021.094089514538]}}, "branch_attrs": {"mutations": {"nuc": ["C24109T"]}}, "children": [{"name": "NZL/21MV0054/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.0972602739726, "confidence": [2021.0972602739726, 2021.0972602739726]}, "tsne_x": {"value": -16.746940037261897}, "umap_x": {"value": 17.779673}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.843771}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 34.20099282404627}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.607077482440463}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -9.429813153557577}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 23.69369896156908}, "mds3": {"value": -28.41077203357465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 2.224140546580001}}, "branch_attrs": {"mutations": {"nuc": ["T26609C", "C28708T", "C29668T"]}}}, {"name": "NODE_0001981", "node_attrs": {"div": 31, "num_date": {"value": 2021.0415510429182, "confidence": [2020.8703314352715, 2021.22923300719]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001729", "node_attrs": {"div": 34, "num_date": {"value": 2021.2405005043574, "confidence": [2021.0481933869473, 2021.388780221486]}}, "branch_attrs": {"mutations": {"nuc": ["C1825T", "C17862T", "C29585T"]}}, "children": [{"name": "NZL/21MV0575/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5027397260274, "confidence": [2021.5027397260274, 2021.5027397260274]}, "tsne_x": {"value": -14.878642791057974}, "umap_x": {"value": 18.785854}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 11.020561}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.52384364812381}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.384046922266887}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -8.026020869069912}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 30.125296111348582}, "mds3": {"value": -33.95034224381961}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.7659915282467469}}, "branch_attrs": {"mutations": {"nuc": ["A1596G", "T8682G", "G9928T", "C11355T", "C17934T", "C28697T"]}}}, {"name": "NODE_0001730", "node_attrs": {"div": 35, "num_date": {"value": 2021.324129876498, "confidence": [2021.1921414767403, 2021.395495336437]}}, "branch_attrs": {"mutations": {"nuc": ["G26152T"]}}, "children": [{"name": "THA/CONI-0797/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4342465753425, "confidence": [2021.4342465753425, 2021.4342465753425]}, "tsne_x": {"value": -15.433134243507094}, "umap_x": {"value": 17.560951}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.626784}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 9.02578121712885}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.17836991896914}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.927761140857102}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Samut Prakan"}, "mds2": {"value": 25.54975775513425}, "mds3": {"value": -26.933018311673283}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -6.6176111340734405}}, "branch_attrs": {"mutations": {"nuc": ["A3054G"]}}}, {"name": "NODE_0001731", "node_attrs": {"div": 38, "num_date": {"value": 2021.4178082191781, "confidence": [2021.3870638612539, 2021.4178082191781]}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "C10714T", "T20600C"]}}, "children": [{"name": "THA/CONI-1340/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_x": {"value": -15.038230515891712}, "umap_x": {"value": 18.374855}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.577387}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.715356692694152}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.3305676986534}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -1.3090790809415322}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Tak"}, "mds2": {"value": 27.732623914023293}, "mds3": {"value": -31.95438293872407}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 13.568211263411277}}, "branch_attrs": {"mutations": {}}}, {"name": "THA/CONI-1329/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_x": {"value": -15.03873294869599}, "umap_x": {"value": 18.466156}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.676827}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.715356692694152}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 19.338178016741367}, "country": {"value": "Thailand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.9604044519030546}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Tak"}, "mds2": {"value": 28.2241751844902}, "mds3": {"value": -32.03509612046364}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 13.568211263411277}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001985", "node_attrs": {"div": 34, "num_date": {"value": 2021.185718716269, "confidence": [2021.065486101249, 2021.286301369863]}}, "branch_attrs": {"mutations": {"nuc": ["T25A", "C29857T", "T29858C"]}}, "children": [{"name": "SAU/SARS-CoV-2_KFSHRC8/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.286301369863, "confidence": [2021.286301369863, 2021.286301369863]}, "tsne_x": {"value": -16.69692747786295}, "umap_x": {"value": 17.170687}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.127542}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.290964636002475}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.679381804095808}, "country": {"value": "Saudi Arabia"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.8913866160933424}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Saudi Arabia"}, "mds2": {"value": 20.880929496778784}, "mds3": {"value": -27.812405285204605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -7.647759248259413}}, "branch_attrs": {"mutations": {"nuc": ["T921A"]}}}, {"name": "NODE_0001725", "node_attrs": {"div": 43, "num_date": {"value": 2021.4064282429963, "confidence": [2021.3652946320158, 2021.4155027390227]}}, "branch_attrs": {"mutations": {"nuc": ["G5374A", "C7162T", "C16323T", "C20736T", "T22016A", "C25427T", "A26319G", "C27503T", "G28739T"], "S": ["W152R"]}, "labels": {"aa": "S: W152R"}}, "children": [{"name": "NZL/21CH0034/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_x": {"value": -15.712768372427892}, "umap_x": {"value": 18.727674}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.9604435}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.734388757660634}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 15.837831040902184}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.9361318256696065}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 31.1871911146174}, "mds3": {"value": -32.30551569548255}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7347579536499191}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001987", "node_attrs": {"div": 43, "num_date": {"value": 2021.414843737205, "confidence": [2021.3829426088873, 2021.4178082191781]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0035/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.4260273972602, "confidence": [2021.4260273972602, 2021.4260273972602]}, "tsne_x": {"value": -15.702903040817432}, "umap_x": {"value": 18.738398}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.971661}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.469171421344162}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 15.824385581602847}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 0.2072406893378142}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 31.76237309649163}, "mds3": {"value": -32.71967920636112}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 11.760957964681513}}, "branch_attrs": {"mutations": {"nuc": ["T25496C"]}}}, {"name": "NZL/21CH0033/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_x": {"value": -15.71359902505967}, "umap_x": {"value": 18.73939}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.973806}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.734388757660634}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 15.83569775925948}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.33997811524561}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 30.80832079130238}, "mds3": {"value": -33.364657018006994}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7347579536499191}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}, {"name": "NODE_0001988", "node_attrs": {"div": 30, "num_date": {"value": 2020.967564147744, "confidence": [2020.7692309369645, 2021.0504457201548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001989", "node_attrs": {"div": 30, "num_date": {"value": 2021.0008694379724, "confidence": [2020.766479857895, 2021.1297442088676]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001721", "node_attrs": {"div": 32, "num_date": {"value": 2021.1437461276626, "confidence": [2021.0140776887904, 2021.196673953821]}}, "branch_attrs": {"mutations": {"nuc": ["A5041G", "T9853C"]}}, "children": [{"name": "NZL/21MV0221/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2150684931507, "confidence": [2021.2150684931507, 2021.2150684931507]}, "tsne_x": {"value": -16.78677906499175}, "umap_x": {"value": 17.720745}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.763191}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.527303853838745}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.549790714577433}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -11.0036996659377}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 20.846096857612505}, "mds3": {"value": -29.24640820482339}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.7629771473561564}}, "branch_attrs": {"mutations": {"nuc": ["C5869T", "C10029T"]}}}, {"name": "NZL/21MV0374/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2808219178082, "confidence": [2021.2808219178082, 2021.2808219178082]}, "tsne_x": {"value": -16.831522561382894}, "umap_x": {"value": 18.041674}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.186434}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.728355867333386}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.477763342324454}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.778591787830823}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 22.93836416970833}, "mds3": {"value": -31.635797044732577}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7334536921384942}}, "branch_attrs": {"mutations": {"nuc": ["C4633T", "C13821T", "G28805A"]}}}]}, {"name": "NODE_0001991", "node_attrs": {"div": 30, "num_date": {"value": 2021.0174808570898, "confidence": [2020.7676061577833, 2021.1362378620538]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0400/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3328767123287, "confidence": [2021.3328767123287, 2021.3328767123287]}, "tsne_x": {"value": -17.591371081901997}, "umap_x": {"value": 18.204277}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.374438}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 53.5295645092146}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.465849182731244}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "mds1": {"value": -16.025398866608636}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 18.52311329726541}, "mds3": {"value": -32.68450742790596}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 6.782808211667372}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "C8293T", "C8626T", "A17856G", "T20573C", "T21861C", "C23657A", "C25047T", "G28904-", "C28905-", "T28906-", "G28907-", "G28908-", "C28909-", "A28910-", "A28911-", "T28912-"], "S": ["I100T", "L699I", "P1162L"]}, "labels": {"aa": "S: I100T, L699I, P1162L"}}}, {"name": "NODE_0001992", "node_attrs": {"div": 30, "num_date": {"value": 2021.030766399568, "confidence": [2020.7690037106793, 2021.1435403599835]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0243/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2342465753425, "confidence": [2021.2342465753425, 2021.2342465753425]}, "tsne_x": {"value": -16.76399111024069}, "umap_x": {"value": 18.059118}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.197684}, "region": {"value": "Oceania"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 33.525832958703724}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.511086606286582}, "country": {"value": "New Zealand"}, "pca_label_for_Nextstrain_clade": {"value": "2"}, "mds1": {"value": -8.664165352475969}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "New Zealand"}, "mds2": {"value": 24.22657633265324}, "mds3": {"value": -30.357063501520443}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.7572061592589985}}, "branch_attrs": {"mutations": {"nuc": ["G3994T", "C17977T", "A21137G", "C28833T", "G28857T"]}}}, {"name": "OU252991", "node_attrs": {"div": 41, "num_date": {"value": 2021.2808219178082, "confidence": [2021.2808219178082, 2021.2808219178082]}, "tsne_x": {"value": -17.67661226742079}, "umap_x": {"value": 18.786007}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 11.019953}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.717787431600997}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.16171624119334}, "country": {"value": "United Kingdom"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.48675223381871}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "England"}, "mds2": {"value": 28.70892683299108}, "mds3": {"value": -37.16696217650205}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.7385078842390662}}, "branch_attrs": {"mutations": {"nuc": ["C6270T", "C11824T", "C12085T", "C12459T", "C13011T", "C14011A", "G14250A", "A21079C", "G26056T", "C27741T", "A29155G"]}}}]}]}]}, {"name": "NODE_0001696", "node_attrs": {"div": 32, "num_date": {"value": 2021.0314953768807, "confidence": [2020.9831950134694, 2021.0534246575342]}}, "branch_attrs": {"mutations": {"nuc": ["G25785T", "G29764A"]}}, "children": [{"name": "Lebanon/QIB-101/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0534246575342, "confidence": [2021.0534246575342, 2021.0534246575342]}, "tsne_x": {"value": -16.756639450973164}, "umap_x": {"value": 17.090069}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.045777}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.558365525160099}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.397599033995583}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -5.0314765003679245}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 21.0743975664743}, "mds3": {"value": -26.300590135594284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 8.28293283256352}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001815", "node_attrs": {"div": 32, "num_date": {"value": 2021.0471021343035, "confidence": [2020.96918208152, 2021.0898990842877]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-187/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1082191780822, "confidence": [2021.1082191780822, 2021.1082191780822]}, "tsne_x": {"value": -16.745377805917432}, "umap_x": {"value": 17.591084}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.58347}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.956831554671964}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.286434538062718}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.106655656609231}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 22.279266997141868}, "mds3": {"value": -28.28299239454292}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 6.806152200563814}}, "branch_attrs": {"mutations": {"nuc": ["T6577C"]}}}, {"name": "NODE_0001994", "node_attrs": {"div": 32, "num_date": {"value": 2021.0567995206263, "confidence": [2020.9720153272715, 2021.099991776653]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-346/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_x": {"value": -16.720618512924727}, "umap_x": {"value": 17.042986}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 8.998694}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.5181996026178515}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.247942656586563}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.212677402961537}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 16.515327424831348}, "mds3": {"value": -27.98498265467332}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.94026970976119}}, "branch_attrs": {"mutations": {"nuc": ["G26520A"]}}}, {"name": "NODE_0001995", "node_attrs": {"div": 32, "num_date": {"value": 2021.0674330567963, "confidence": [2020.9729008754657, 2021.1089170381613]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-407/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.16301369863, "confidence": [2021.16301369863, 2021.16301369863]}, "tsne_x": {"value": -16.599322614846788}, "umap_x": {"value": 17.714785}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.780373}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.8677005738449175}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.842945553404103}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.3292170224963313}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 21.52090331140989}, "mds3": {"value": -31.66224792622452}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -0.8366599953537603}}, "branch_attrs": {"mutations": {"nuc": ["C66T", "C6701T", "C12641T"]}}}, {"name": "NODE_0001996", "node_attrs": {"div": 32, "num_date": {"value": 2021.0727290498144, "confidence": [2020.97438488339, 2021.111070915923]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-336/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_x": {"value": -16.747058213221155}, "umap_x": {"value": 17.141563}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.097181}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.214958087032501}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.31154084737696}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.09708401998383}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 17.219431360802048}, "mds3": {"value": -28.05659566681327}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 10.086100822646324}}, "branch_attrs": {"mutations": {"nuc": ["C21T", "C25568T"]}}}, {"name": "NODE_0001997", "node_attrs": {"div": 32, "num_date": {"value": 2021.0804162490658, "confidence": [2020.9755465840071, 2021.113858743707]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-276/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.127397260274, "confidence": [2021.127397260274, 2021.127397260274]}, "tsne_x": {"value": -16.715805354054574}, "umap_x": {"value": 17.663795}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.700206}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.222107064362211}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.14393338737534}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.586312577675532}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 23.526040577500144}, "mds3": {"value": -27.74735313752732}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 10.892570600395093}}, "branch_attrs": {"mutations": {"nuc": ["C21774T", "C27393T"], "S": ["S71F"]}, "labels": {"aa": "S: S71F"}}}, {"name": "NODE_0001998", "node_attrs": {"div": 32, "num_date": {"value": 2021.0889887895198, "confidence": [2020.9732593475867, 2021.1577306143163]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-628/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2123287671234, "confidence": [2021.2123287671234, 2021.2123287671234]}, "tsne_x": {"value": -16.608386693513214}, "umap_x": {"value": 17.96693}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.07997}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.009157040811112}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.941627574950132}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -4.060877768284266}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 20.22040907368052}, "mds3": {"value": -33.47141238056629}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -5.106152429522854}}, "branch_attrs": {"mutations": {"nuc": ["C8320T", "T25695C", "C27923T"]}}}, {"name": "NODE_0001999", "node_attrs": {"div": 32, "num_date": {"value": 2021.097302410207, "confidence": [2020.9724350361696, 2021.1588448122195]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0002000", "node_attrs": {"div": 32, "num_date": {"value": 2021.1253140773672, "confidence": [2020.9707662709163, 2021.161117335895]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-487/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1849315068494, "confidence": [2021.1849315068494, 2021.1849315068494]}, "tsne_x": {"value": -16.678892410542126}, "umap_x": {"value": 17.06819}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.018889}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.9656101747351915}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.187152501537945}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.340526719163141}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 15.65497594446396}, "mds3": {"value": -29.38978791967529}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.5161018583646396}}, "branch_attrs": {"mutations": {"nuc": ["C11494T"]}}}, {"name": "Lebanon/QIB-697/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2397260273972, "confidence": [2021.2397260273972, 2021.2397260273972]}, "tsne_x": {"value": -16.66684150675581}, "umap_x": {"value": 18.479687}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.690542}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.871021454015024}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.389143162250985}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -7.806889529876345}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 19.95068131426635}, "mds3": {"value": -36.76153608809097}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 3.5652621076951494}}, "branch_attrs": {"mutations": {"nuc": ["G6101T", "C7471T", "G10396C", "C26151T", "G26428T", "T27384C", "G28857T"]}}}]}, {"name": "NODE_0002001", "node_attrs": {"div": 32, "num_date": {"value": 2021.1116074266436, "confidence": [2020.972022504837, 2021.1614979077792]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-677/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2287671232878, "confidence": [2021.2287671232878, 2021.2287671232878]}, "tsne_x": {"value": -16.271583841321586}, "umap_x": {"value": 18.354664}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.553361}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.902949836990859}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.69853701615422}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -0.5500441633135926}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 27.2456866638578}, "mds3": {"value": -31.730535608932897}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -4.7030127123487775}}, "branch_attrs": {"mutations": {"nuc": ["A158G", "C3619T", "C6968T", "C14120T", "C27389T", "G28727T"]}}}, {"name": "NODE_0002002", "node_attrs": {"div": 32, "num_date": {"value": 2021.1259568765213, "confidence": [2020.9477562085683, 2021.1709774339058]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0002003", "node_attrs": {"div": 32, "num_date": {"value": 2021.1437532860637, "confidence": [2020.9422430595237, 2021.2329638305678]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-749/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_x": {"value": -16.702109992258613}, "umap_x": {"value": 17.770575}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.865891}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.004497467397617}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 17.002435179934185}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -8.760082232597567}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 24.97863999067112}, "mds3": {"value": -27.2159401520868}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -5.031227267766923}}, "branch_attrs": {"mutations": {"nuc": ["C6541T", "G26730T", "G29742T"]}}}, {"name": "NODE_0002004", "node_attrs": {"div": 32, "num_date": {"value": 2021.1847458230445, "confidence": [2020.9380689373154, 2021.253270970516]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-120449/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_x": {"value": -16.4497616430518}, "umap_x": {"value": 18.230904}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.40784}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.7266391534066186}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.501151245858477}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 1.241800032189703}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Nordjylland"}, "mds2": {"value": 23.35183825779265}, "mds3": {"value": -33.3181864300765}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.6937648548427148}}, "branch_attrs": {"mutations": {"nuc": ["G3250T", "C5203T", "T8473C", "C18131T", "T18499C", "-21994T"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "IMS-10033-CVDP-3A4AF929-9552-415B-9F7A-F6B7629ED1FA", "node_attrs": {"div": 37, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_x": {"value": -16.69913716613235}, "umap_x": {"value": 18.195639}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.364317}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.183997947501641}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.906428705002707}, "country": {"value": "Germany"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -10.62468774298337}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": 25.0275705521824}, "mds3": {"value": -30.41105237519932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 18.08638814521504}}, "branch_attrs": {"mutations": {"nuc": ["C7081T", "C9442T", "C9979T", "C18129T", "T21574C"]}}}]}]}, {"name": "NODE_0002005", "node_attrs": {"div": 32, "num_date": {"value": 2021.1422217246231, "confidence": [2020.9476959682463, 2021.1770454963134]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-681/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2397260273972, "confidence": [2021.2397260273972, 2021.2397260273972]}, "tsne_x": {"value": -16.657724218852845}, "umap_x": {"value": 17.714428}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 9.770001}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.013017165530632}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.9733179171456}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -2.361868457040808}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 23.0613681006938}, "mds3": {"value": -30.44894428852669}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.1905594989143501}}, "branch_attrs": {"mutations": {"nuc": ["C2485T", "T7759A", "C8947T"]}}}, {"name": "NODE_0002006", "node_attrs": {"div": 32, "num_date": {"value": 2021.1502492501304, "confidence": [2020.9485401954657, 2021.1889958080242]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-648/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2260273972602, "confidence": [2021.2260273972602, 2021.2260273972602]}, "tsne_x": {"value": -16.662608784195157}, "umap_x": {"value": 18.204979}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.376527}, "region": {"value": "Asia"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.914896683974964}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.884265518964607}, "country": {"value": "Lebanon"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.146913660049864}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Lebanon"}, "mds2": {"value": 24.354090056571263}, "mds3": {"value": -32.22537727396892}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": -1.268420510260848}}, "branch_attrs": {"mutations": {"nuc": ["T820C", "C15720T", "A18836G", "C29272T"]}}}, {"name": "NODE_0001707", "node_attrs": {"div": 34, "num_date": {"value": 2021.2584260261287, "confidence": [2021.061163879217, 2021.328833541107]}}, "branch_attrs": {"mutations": {"nuc": ["-21994T", "T22016A", "A27674T"], "S": ["-144X", "W152R"]}, "labels": {"aa": "S: -144X, W152R"}}, "children": [{"name": "Denmark/DCGC-113829/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_x": {"value": -16.349644853928556}, "umap_x": {"value": 18.272793}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.4588375}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.91841841546684}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.342931132052197}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": 2.602152096177901}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Hovedstaden"}, "mds2": {"value": 28.391984046735782}, "mds3": {"value": -29.775745622724223}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 1.9024927176720388}}, "branch_attrs": {"mutations": {"nuc": ["G677A", "T17963C", "C21595T", "C29754T"]}}}, {"name": "Denmark/DCGC-118691/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_x": {"value": -16.521360331819032}, "umap_x": {"value": 18.229666}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "umap_y": {"value": 10.408456}, "region": {"value": "Europe"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.460318799613117}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "tsne_y": {"value": 16.577242348769307}, "country": {"value": "Denmark"}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "mds1": {"value": -6.317782799622054}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "division": {"value": "Hovedstaden"}, "mds2": {"value": 28.046871084444863}, "mds3": {"value": -29.69651516509342}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "mds_label_for_Nextstrain_clade": {"value": "0"}, "pca2": {"value": 0.5482407664885706}}, "branch_attrs": {"mutations": {"nuc": ["C16915T", "G25647T", "T29023C"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}}
\ No newline at end of file
+{"version": "v2", "meta": {"title": "Genetic cartography of SARS-CoV-2 (Jan 2020-Jan 2022)", "updated": "2023-08-17", "build_url": "https://github.com/blab/cartography", "maintainers": [{"name": "Sravani Nanduri"}, {"name": "John Huddleston"}], "display_defaults": {"color_by": "Nextstrain_clade", "distance_measure": "num_date", "geo_resolution": "division", "map_triplicate": true}, "genome_annotations": {"nuc": {"end": 29903, "start": 1, "strand": "+"}, "S": {"end": 25384, "seqid": "sars-cov-2-nextstrain/config/annotation.gff", "start": 21563, "strand": "+", "type": "gene"}}, "colorings": [{"key": "num_date", "title": "Sampling date", "type": "continuous"}, {"key": "gt", "title": "Genotype", "type": "categorical"}, {"key": "pca_label_for_Nextstrain_clade", "title": "PCA cluster (Nextstrain clade)", "type": "categorical"}, {"key": "tsne_y", "title": "t-SNE y", "type": "continuous"}, {"key": "pca_label_for_Nextclade_pango_collapsed", "title": "PCA cluster (Nextclade pango)", "type": "categorical"}, {"key": "mds_label_for_Nextclade_pango_collapsed", "title": "MDS cluster (Nextclade pango)", "type": "categorical"}, {"key": "tsne_x", "title": "t-SNE x", "type": "continuous"}, {"key": "mds3", "title": "MDS 3", "type": "continuous"}, {"key": "pca2", "title": "PCA 2", "type": "continuous"}, {"key": "t-sne_label_for_Nextclade_pango_collapsed", "title": "t-SNE cluster (Nextclade pango)", "type": "categorical"}, {"key": "umap_label_for_Nextstrain_clade", "title": "UMAP cluster (Nextstrain clade)", "type": "categorical"}, {"key": "mds1", "title": "MDS 1", "type": "continuous"}, {"key": "pca1", "title": "PCA 1", "type": "continuous"}, {"key": "umap_x", "title": "UMAP x", "type": "continuous"}, {"key": "t-sne_label_for_Nextstrain_clade", "title": "t-SNE cluster (Nextstrain clade)", "type": "categorical"}, {"key": "mds2", "title": "MDS 2", "type": "continuous"}, {"key": "umap_label_for_Nextclade_pango_collapsed", "title": "UMAP cluster (Nextclade pango)", "type": "categorical"}, {"key": "umap_y", "title": "UMAP y", "type": "continuous"}, {"key": "mds_label_for_Nextstrain_clade", "title": "MDS cluster (Nextstrain clade)", "type": "categorical"}, {"key": "Nextstrain_clade", "title": "Clade", "type": "categorical"}, {"key": "Nextclade_pango", "title": "Nextclade pango", "type": "categorical"}, {"key": "Nextclade_pango_collapsed", "title": "Nextclade pango (collapsed)", "type": "categorical"}], "filters": ["Nextstrain_clade", "Nextclade_pango_collapsed", "pca_label_for_Nextstrain_clade", "mds_label_for_Nextstrain_clade", "t-sne_label_for_Nextstrain_clade", "umap_label_for_Nextstrain_clade", "pca_label_for_Nextclade_pango_collapsed", "mds_label_for_Nextclade_pango_collapsed", "t-sne_label_for_Nextclade_pango_collapsed", "umap_label_for_Nextclade_pango_collapsed", "region", "country", "division"], "geo_resolutions": [{"key": "division", "demes": {"Georgia": {"latitude": 32.3293809, "longitude": -83.1137365}, "Scotland": {"latitude": 56.7861112, "longitude": -4.1140517}, "Maryland": {"latitude": 39.5162234, "longitude": -76.9382068}, "Florida": {"latitude": 27.7567667, "longitude": -81.4639834}, "Vermont": {"latitude": 44.5990718, "longitude": -72.5002607}, "Utah": {"latitude": 39.4225192, "longitude": -111.7143583}, "Virginia": {"latitude": 37.1232245, "longitude": -78.492772}, "Tennessee": {"latitude": 35.7730076, "longitude": -86.282008}, "Arkansas": {"latitude": 35.2048883, "longitude": -92.4479107}, "Oregon": {"latitude": 43.9792797, "longitude": -120.7372569}, "New Hampshire": {"latitude": 43.4718339, "longitude": -71.6182147}, "Minnesota": {"latitude": 45.9896587, "longitude": -94.6113287}, "Illinois": {"latitude": 40.0796319, "longitude": -89.4339808}, "New York": {"latitude": 40.7642499, "longitude": -73.9545249}, "North Carolina": {"latitude": 35.6729639, "longitude": -79.0392918}, "Texas": {"latitude": 31.8160381, "longitude": -99.5120985}, "South Carolina": {"latitude": 33.6874388, "longitude": -80.4363742}, "Alabama": {"latitude": 33.2588817, "longitude": -86.8295336}, "Indiana": {"latitude": 40.3270127, "longitude": -86.1746932}, "Pennsylvania": {"latitude": 40.9699889, "longitude": -77.727883}, "Michigan": {"latitude": 43.6211955, "longitude": -84.6824345}, "Alaska": {"latitude": 64.4459613, "longitude": -149.6809089}, "Colorado": {"latitude": 38.7251776, "longitude": -105.6077166}, "Arizona": {"latitude": 34.395342, "longitude": -111.7632754}, "Idaho": {"latitude": 43.6447642, "longitude": -114.015407}, "Ohio": {"latitude": 40.2253569, "longitude": -82.6881394}, "Oklahoma": {"latitude": 34.9550817, "longitude": -97.2684062}, "South Dakota": {"latitude": 44.6471761, "longitude": -100.3487609}, "Wisconsin": {"latitude": 44.4308975, "longitude": -89.6884636}, "Massachusetts": {"latitude": 42.3788774, "longitude": -72.0323659}, "Montana": {"latitude": 47.3752671, "longitude": -109.6387578}, "Kansas": {"latitude": 38.27312, "longitude": -98.5821871}, "Nebraska": {"latitude": 41.7370229, "longitude": -99.5873815}, "Delaware": {"latitude": 38.6920451, "longitude": -75.4013314}, "Washington": {"latitude": 47.6, "longitude": -122.33}, "New Jersey": {"latitude": 40.0757384, "longitude": -74.4041621}, "West Virginia": {"latitude": 38.4758406, "longitude": -80.8408414}, "Kentucky": {"latitude": 37.5726028, "longitude": -85.155141}, "California": {"latitude": 36.7014631, "longitude": -118.7559973}, "New Mexico": {"latitude": 34.5708167, "longitude": -105.9930069}, "Connecticut": {"latitude": 41.6500201, "longitude": -72.7342162}, "Mississippi": {"latitude": 32.9715645, "longitude": -89.7348496}}}, {"key": "country", "demes": {"India": {"latitude": 22.3511148, "longitude": 78.6677428}, "Ecuador": {"latitude": -1.3397667, "longitude": -79.3666964}, "France": {"latitude": 46.603354, "longitude": 1.8883335}, "Germany": {"latitude": 51.0834196, "longitude": 10.4234469}, "Paraguay": {"latitude": -23.33333, "longitude": -58.0}, "Taiwan": {"latitude": 23.6978, "longitude": 120.9605}, "Israel": {"latitude": 31.5, "longitude": 34.75}, "Laos": {"latitude": 20.0171109, "longitude": 103.378253}, "Gambia": {"latitude": 13.5, "longitude": -15.5}, "Pakistan": {"latitude": 30.0, "longitude": 70.0}, "Slovakia": {"latitude": 48.66667, "longitude": 19.5}, "Mexico": {"latitude": 19.4325301, "longitude": -99.1332101}, "United Kingdom": {"latitude": 54.542713, "longitude": -2.384858}, "Sierra Leone": {"latitude": 8.5, "longitude": -11.5}, "Bahrain": {"latitude": 26.22787, "longitude": 50.58565}, "Venezuela": {"latitude": 8.0, "longitude": -66.0}, "Iceland": {"latitude": 64.9841821, "longitude": -18.1059012}, "Lebanon": {"latitude": 33.88894, "longitude": 35.49442}, "South Korea": {"latitude": 35.3985008, "longitude": 127.937111}, "Bangladesh": {"latitude": 24.4768783, "longitude": 90.2932426}, "Finland": {"latitude": 63.2467777, "longitude": 25.9209164}, "Gabon": {"latitude": -0.8999694, "longitude": 11.6899699}, "Egypt": {"latitude": 26.2540493, "longitude": 29.2675469}, "Ghana": {"latitude": 8.0300284, "longitude": -1.080027}, "Japan": {"latitude": 35.68536, "longitude": 139.75309}, "Mali": {"latitude": 18.0, "longitude": -2.0}, "China": {"latitude": 35.000074, "longitude": 104.999927}, "Armenia": {"latitude": 40.18111, "longitude": 44.51361}, "Nigeria": {"latitude": 10.0, "longitude": 8.0}, "Malaysia": {"latitude": 2.3923759, "longitude": 112.8471939}, "Brazil": {"latitude": -10.3333332, "longitude": -53.1999999}, "Djibouti": {"latitude": 11.58901, "longitude": 43.14503}, "Seychelles": {"latitude": -4.58333, "longitude": 55.66667}, "Denmark": {"latitude": 56.0, "longitude": 10.0}, "Benin": {"latitude": 9.668764, "longitude": 2.284078}, "Mongolia": {"latitude": 46.8250388, "longitude": 103.8499736}, "Hong Kong": {"latitude": 22.3964, "longitude": 114.1095}, "New Zealand": {"latitude": -41.500083, "longitude": 172.8344077}, "Iraq": {"latitude": 33.0, "longitude": 44.0}, "Italy": {"latitude": 42.6384261, "longitude": 12.674297}, "Australia": {"latitude": -24.7761085, "longitude": 134.755}, "Jordan": {"latitude": 31.1667049, "longitude": 36.941628}, "USA": {"latitude": 39.7837304, "longitude": -100.4458824}, "Argentina": {"latitude": -34.0, "longitude": -64.0}, "Chile": {"latitude": -31.7613364, "longitude": -71.3187696}, "Vietnam": {"latitude": 16.16667, "longitude": 107.83333}, "Zimbabwe": {"latitude": -19.307486, "longitude": 29.7968377}, "Malawi": {"latitude": -13.550995, "longitude": 34.124594}, "Switzerland": {"latitude": 47.00016, "longitude": 8.01427}, "Kazakhstan": {"latitude": 47.2286086, "longitude": 65.2093197}, "Kenya": {"latitude": 1.0, "longitude": 38.0}, "Uruguay": {"latitude": -33.0, "longitude": -56.0}, "Saudi Arabia": {"latitude": 25.0, "longitude": 45.0}, "Tunisia": {"latitude": 36.81897, "longitude": 10.16579}, "Colombia": {"latitude": 2.893108, "longitude": -73.7845142}, "Thailand": {"latitude": 14.8971921, "longitude": 100.83273}, "Uganda": {"latitude": 1.5333554, "longitude": 32.2166578}, "South Africa": {"latitude": -28.8166235, "longitude": 24.991639}, "Bhutan": {"latitude": 27.5142, "longitude": 90.4336}, "Poland": {"latitude": 52.0977181, "longitude": 19.0258159}, "Peru": {"latitude": -10.0, "longitude": -75.25}}}, {"key": "region", "demes": {"Oceania": {"latitude": -25.0562891, "longitude": 152.008576}, "Africa": {"latitude": 4.070194, "longitude": 21.824559}, "North America": {"latitude": 28.2367447, "longitude": -97.738017}, "South America": {"latitude": -13.083583, "longitude": -58.470721}, "Europe": {"latitude": 49.646237, "longitude": 10.799454}}}], "panels": ["tree"]}, "tree": {"name": "NODE_0000004", "node_attrs": {"div": 0, "num_date": {"value": 2019.8936481979133, "confidence": [2019.7255438673337, 2019.918100159873]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Wuhan-Hu-1/2019", "node_attrs": {"div": 0, "num_date": {"value": 2019.9849315068493, "confidence": [2019.9849315068493, 2019.9849315068493]}, "tsne_y": {"value": -18.76452302060452}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "China"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.647861718649627}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.146309294828884}, "tsne_x": {"value": -6.63051146146272}, "mds3": {"value": 1.937704594834032}, "umap_x": {"value": 6.9355}, "pca2": {"value": -19.204588407913644}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.7349628452231788}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.33709}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000001", "node_attrs": {"div": 0, "num_date": {"value": 2019.9036352368396, "confidence": [2019.7253260294522, 2019.9187060627667]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000005", "node_attrs": {"div": 0, "num_date": {"value": 2019.912337819743, "confidence": [2019.840937659846, 2020.006072121583]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000542", "node_attrs": {"div": 1, "num_date": {"value": 2020.0066818093771, "confidence": [2019.963713288185, 2020.0750663953938]}}, "branch_attrs": {"mutations": {"nuc": ["C17373T"]}}, "children": [{"name": "AUS/VIC14/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0887978142077, "confidence": [2020.0887978142077, 2020.0887978142077]}, "tsne_y": {"value": -18.74141578883975}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.7182120528539215}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 1.429988178120443}, "tsne_x": {"value": -6.567748608672482}, "mds3": {"value": 2.1522331477130603}, "umap_x": {"value": 6.934645}, "pca2": {"value": -0.8478228556274792}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.6158061410626763}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.257648}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "CHN/IQTC03/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -18.11685156825144}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Guangdong"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.046915788015829}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.909283506757682}, "tsne_x": {"value": -6.25379011036958}, "mds3": {"value": 1.4676320698414649}, "umap_x": {"value": 6.075319}, "pca2": {"value": -13.91935801351424}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.587256707135593}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.15882}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["G654A", "G6819T", "T6996C", "G29527A"]}}}]}, {"name": "NODE_0000026", "node_attrs": {"div": 0, "num_date": {"value": 2019.9298453640108, "confidence": [2019.8754221166607, 2020.0120397033388]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000560", "node_attrs": {"div": 1, "num_date": {"value": 2020.008416703142, "confidence": [2019.9763971708392, 2020.055678649837]}}, "branch_attrs": {"mutations": {"nuc": ["G26144T"]}}, "children": [{"name": "HongKong/36_0702/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1079234972678, "confidence": [2020.1079234972678, 2020.1079234972678]}, "tsne_y": {"value": -18.867656576390115}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.224759061314415}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -3.93958622063095}, "tsne_x": {"value": -7.510830304897865}, "mds3": {"value": 3.637215460672224}, "umap_x": {"value": 5.966208}, "pca2": {"value": -0.2763632092945964}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.6458854036583337}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.409519}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C9962T", "C12756T", "T13929C", "C14724T", "T21584G"], "S": ["L8V"]}, "labels": {"aa": "S: L8V"}}}, {"name": "AUS/VIC01/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_y": {"value": -19.262665600860743}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.472663477402536}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.296504025852045}, "tsne_x": {"value": -6.860247861166969}, "mds3": {"value": 2.473181092923111}, "umap_x": {"value": 6.213188}, "pca2": {"value": -18.05823010567953}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.6096000486803703}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.41875}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["T19065C", "T22303G", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-"], "S": ["S247R"]}, "labels": {"aa": "S: S247R"}}}, {"name": "NODE_0000006", "node_attrs": {"div": 1, "num_date": {"value": 2020.0093226191802, "confidence": [2019.9897791127298, 2020.0588674699252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/2_1801/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.061475409836, "confidence": [2020.061475409836, 2020.061475409836]}, "tsne_y": {"value": -19.39857180468386}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.3879943266398165}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 4.7520964591428205}, "tsne_x": {"value": -6.866954105844062}, "mds3": {"value": 2.058472670533288}, "umap_x": {"value": 6.4693437}, "pca2": {"value": 1.675849220607159}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.000546563401618}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.615557}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T11409C", "T21537A", "T28861C"]}}}, {"name": "NODE_0000007", "node_attrs": {"div": 1, "num_date": {"value": 2020.0430956169885, "confidence": [2020.0092359936705, 2020.063108253825]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC02/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0642076502731, "confidence": [2020.0642076502731, 2020.0642076502731]}, "tsne_y": {"value": -18.989793016080945}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.687061207013513}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 0.991336542654904}, "tsne_x": {"value": -6.773656127314252}, "mds3": {"value": 2.1238355666649413}, "umap_x": {"value": 6.914885}, "pca2": {"value": -2.8872849694933413}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.662746767906775}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.248156}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000008", "node_attrs": {"div": 1, "num_date": {"value": 2020.0441084499737, "confidence": [2020.0228127031553, 2020.0637382287102]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OM065370", "node_attrs": {"div": 2, "num_date": {"value": 2020.0969945355191, "confidence": [2020.0969945355191, 2020.0969945355191]}, "tsne_y": {"value": -19.1017929740872}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Anhui"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.853117002964656}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.14515294471334}, "tsne_x": {"value": -6.83936448377205}, "mds3": {"value": 2.823054719309486}, "umap_x": {"value": 6.3663445}, "pca2": {"value": -19.20594747561176}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.367305308660734}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.614332}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["G28812T"]}}}, {"name": "NODE_0000009", "node_attrs": {"div": 1, "num_date": {"value": 2020.0504311222096, "confidence": [2020.0300775589112, 2020.0656508402412]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OM065363", "node_attrs": {"div": 4, "num_date": {"value": 2020.0915300546449, "confidence": [2020.0915300546449, 2020.0915300546449]}, "tsne_y": {"value": -19.38354320825376}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Anhui"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.785359621472595}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.14638279349188}, "tsne_x": {"value": -6.891351101681122}, "mds3": {"value": 1.573214389059853}, "umap_x": {"value": 6.1429195}, "pca2": {"value": -19.20307830083516}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.5647245072136764}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.329424}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["T6382A", "C14358T", "C28531T"]}}}, {"name": "NODE_0000011", "node_attrs": {"div": 1, "num_date": {"value": 2020.0627174840533, "confidence": [2020.0364525182483, 2020.0669398907103]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC03/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_y": {"value": -18.98835757950794}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.1197360408635015}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 0.5218262469935923}, "tsne_x": {"value": -6.778309634642823}, "mds3": {"value": 1.4817019075928293}, "umap_x": {"value": 6.9394865}, "pca2": {"value": -4.160903882848336}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.549879734635577}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.413527}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000567", "node_attrs": {"div": 5, "num_date": {"value": 2020.1623368016278, "confidence": [2020.120399308407, 2020.1908951041705]}}, "branch_attrs": {"mutations": {"nuc": ["G13627T", "C14805T", "C15540T", "A28338G"]}}, "children": [{"name": "NZL/20VR1857/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2445355191257, "confidence": [2020.2445355191257, 2020.2445355191257]}, "tsne_y": {"value": -20.16555636510255}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.298313889503817}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.3430607345013845}, "tsne_x": {"value": -7.1109028100436245}, "mds3": {"value": 0.1864731624420499}, "umap_x": {"value": 5.8635473}, "pca2": {"value": 1.2758247216816332}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.715704477203097}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.481415}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C3096T", "C12781T", "G17944T"]}}}, {"name": "CHL/Santiago-PUC_MVL_0012/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_y": {"value": -20.21888294566915}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.320851401792536}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.927422510570092}, "tsne_x": {"value": -7.503254515280201}, "mds3": {"value": 1.8389024506035736}, "umap_x": {"value": 5.9583826}, "pca2": {"value": 11.957528106010525}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 8.46824975174876}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.089885}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "C15738T", "C23744T", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-"], "S": ["P728S"]}, "labels": {"aa": "S: P728S"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000034", "node_attrs": {"div": 0, "num_date": {"value": 2019.9560010570954, "confidence": [2019.916835739508, 2020.015540043727]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000577", "node_attrs": {"div": 2, "num_date": {"value": 2019.983570820164, "confidence": [2019.9578740849356, 2020.0257266521196]}}, "branch_attrs": {"mutations": {"nuc": ["C8782T", "T28144C"]}}, "children": [{"name": "GBR/SARS-CoV-2Engl2/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -19.49651158362101}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "United Kingdom"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.41815865943378}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -3.892972650417733}, "tsne_x": {"value": -5.688311410972295}, "mds3": {"value": 1.2336886188215423}, "umap_x": {"value": 6.0828853}, "pca2": {"value": -0.2557728854409004}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.397105680166696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.166765}, "country": {"value": "United Kingdom"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["T18488C", "T23605G", "A29596G"]}}}, {"name": "NODE_0000578", "node_attrs": {"div": 4, "num_date": {"value": 2020.0603065684609, "confidence": [2020.0312669109799, 2020.0895965188904]}}, "branch_attrs": {"mutations": {"nuc": ["G28878A", "G29742A"]}}, "children": [{"name": "AUS/VIC07/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1051912568305, "confidence": [2020.1051912568305, 2020.1051912568305]}, "tsne_y": {"value": -19.25030808327132}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.717321541285491}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.3268113216521846}, "tsne_x": {"value": -5.2616066665360535}, "mds3": {"value": 0.1986594501909706}, "umap_x": {"value": 6.3018517}, "pca2": {"value": 0.5186752854261552}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.280941272609877}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.504017}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C10038T"]}}}, {"name": "NODE_0000015", "node_attrs": {"div": 4, "num_date": {"value": 2020.0997267759562, "confidence": [2020.0589166711566, 2020.0997267759562]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-03046181-001/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0997267759562, "confidence": [2020.0997267759562, 2020.0997267759562]}, "tsne_y": {"value": -19.22725262764572}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.037875534619708}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.421913892300259}, "tsne_x": {"value": -5.394192940349022}, "mds3": {"value": 0.5168076184082709}, "umap_x": {"value": 6.209617}, "pca2": {"value": -15.628256641396538}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.638423075120535}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.469517}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000016", "node_attrs": {"div": 4, "num_date": {"value": 2020.1607833703704, "confidence": [2019.9788020649514, 2020.1935515828413]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000018", "node_attrs": {"div": 4, "num_date": {"value": 2020.1843745793537, "confidence": [2019.9766405481248, 2020.219136707471]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GHA/3177_S12/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2445355191257, "confidence": [2020.2445355191257, 2020.2445355191257]}, "tsne_y": {"value": -19.2225013055208}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -6.968234601220279}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 41.28876973720831}, "tsne_x": {"value": -5.129655056917743}, "mds3": {"value": 0.2162746706114151}, "umap_x": {"value": 6.2593007}, "pca2": {"value": -7.970907087865683}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 7.3960598708210545}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.35658}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C21844T", "C24370T"]}}}, {"name": "NODE_0000584", "node_attrs": {"div": 7, "num_date": {"value": 2020.32647597869, "confidence": [2020.2777558669425, 2020.361719461364]}}, "branch_attrs": {"mutations": {"nuc": ["G11230T", "G27670T", "G28167A"]}}, "children": [{"name": "KEN/K10230/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -19.051977227931832}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.53651033593765}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.897046438249762}, "tsne_x": {"value": -4.675759926327489}, "mds3": {"value": 2.22333265659656}, "umap_x": {"value": 6.005101}, "pca2": {"value": -0.3203451993618042}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 7.811654300387397}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.866979}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G487T", "C5544T", "G29422T"]}}}, {"name": "KEN/C7579/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3674863387978, "confidence": [2020.3674863387978, 2020.3674863387978]}, "tsne_y": {"value": -19.15839521202629}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.983605960862658}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 12.581647932108812}, "tsne_x": {"value": -4.924811476856928}, "mds3": {"value": -0.813298522205002}, "umap_x": {"value": 5.9840784}, "pca2": {"value": 1.759201990657574}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.533416948028538}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.64585}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A19246G"]}}}]}]}, {"name": "NODE_0000579", "node_attrs": {"div": 5, "num_date": {"value": 2020.1847999287747, "confidence": [2020.1571049798256, 2020.2035519125684]}}, "branch_attrs": {"mutations": {"nuc": ["G22468T"]}}, "children": [{"name": "SAU/85613/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2035519125684, "confidence": [2020.2035519125684, 2020.2035519125684]}, "tsne_y": {"value": -19.169510612799165}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Mecca"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.636665229599716}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.397723780787069}, "tsne_x": {"value": -5.059495703046774}, "mds3": {"value": 0.1792936637433902}, "umap_x": {"value": 5.977228}, "pca2": {"value": -5.475408963919082}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.203645533711678}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.632359}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G28027T"]}}}, {"name": "NODE_0000021", "node_attrs": {"div": 5, "num_date": {"value": 2020.1932192098902, "confidence": [2020.1667205769475, 2020.2781129997438]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU994655", "node_attrs": {"div": 9, "num_date": {"value": 2020.3101092896175, "confidence": [2020.3101092896175, 2020.3101092896175]}, "tsne_y": {"value": -16.50957322598939}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.163769025837695}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.52181213632723}, "tsne_x": {"value": -4.688338182810632}, "mds3": {"value": 1.5902141448979066}, "umap_x": {"value": 7.3737884}, "pca2": {"value": -19.52047869919342}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": -2.180745460372804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.571974}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C241T", "C3037T", "G22289-", "C22290-", "T22291-", "T22292-", "T22293-", "A22294-", "A23403G", "G25563T"], "S": ["A243-", "L244-", "D614G"]}, "labels": {"aa": "S: A243-, L244-, D614G"}}}, {"name": "NODE_0000022", "node_attrs": {"div": 5, "num_date": {"value": 2020.2351972193992, "confidence": [2020.1641092961456, 2020.2840812054794]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "TUN/TUN_ADAGE_4870/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5150273224044, "confidence": [2020.5150273224044, 2020.5150273224044]}, "tsne_y": {"value": -18.934281182164856}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Tunisia"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.298824184077407}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.988813901005058}, "tsne_x": {"value": -4.630222688380077}, "mds3": {"value": 0.3286739084030819}, "umap_x": {"value": 6.0224466}, "pca2": {"value": -19.104240304644}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 9.649492034184236}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.818922}, "country": {"value": "Tunisia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A361G", "T5359C", "G6337T", "C11575T", "G27754T", "G29449T"]}}}, {"name": "IND/GBRC119/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3210382513662, "confidence": [2020.3210382513662, 2020.3210382513662]}, "tsne_y": {"value": -19.10340091105084}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Gujarat"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.97459283295636}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.287949519229328}, "tsne_x": {"value": -4.858874145810144}, "mds3": {"value": 0.1351549246284554}, "umap_x": {"value": 5.949052}, "pca2": {"value": -2.7499543205955828}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 7.920490085955496}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.3707905}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T771C", "G11306A", "C25513T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000023", "node_attrs": {"div": 2, "num_date": {"value": 2019.9917434791103, "confidence": [2019.9718959050301, 2020.0286258872704]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000024", "node_attrs": {"div": 2, "num_date": {"value": 2020.0001259449543, "confidence": [2019.9812099128617, 2020.0323666054753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000025", "node_attrs": {"div": 2, "num_date": {"value": 2020.0085649613711, "confidence": [2019.9921451959747, 2020.0543545394087]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC13/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0833333333333, "confidence": [2020.0833333333333, 2020.0833333333333]}, "tsne_y": {"value": -19.444324324612808}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.5110862213245175}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 0.614483568650324}, "tsne_x": {"value": -5.726040529720535}, "mds3": {"value": 1.647051586082799}, "umap_x": {"value": 6.347973}, "pca2": {"value": -4.136501685095186}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.608706091920455}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.486525}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A2476G", "C29743T"]}}}, {"name": "NODE_0000593", "node_attrs": {"div": 8, "num_date": {"value": 2020.1623014193815, "confidence": [2020.1263165639623, 2020.185683963808]}}, "branch_attrs": {"mutations": {"nuc": ["A895G", "C2942T", "G4390T", "C9598T", "G20134T", "G24047A"], "S": ["A829T"]}, "labels": {"aa": "S: A829T"}}, "children": [{"name": "THA/CONI-0262/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_y": {"value": -20.00576907938364}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.90107425910447}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.614312526984334}, "tsne_x": {"value": -4.292291758380967}, "mds3": {"value": 2.8020844984659288}, "umap_x": {"value": 6.030821}, "pca2": {"value": -5.293253535145097}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 8.79156924820319}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.829994}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A11782G", "C29741T"]}}}, {"name": "NODE_0000594", "node_attrs": {"div": 9, "num_date": {"value": 2020.2002297668294, "confidence": [2020.1731590626434, 2020.200819672131]}}, "branch_attrs": {"mutations": {"nuc": ["G27877T"]}}, "children": [{"name": "THA/CONI-0265/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_y": {"value": -19.99558657303728}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.73610383307331}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.206514523682154}, "tsne_x": {"value": -4.325844811420592}, "mds3": {"value": 4.013574520049137}, "umap_x": {"value": 5.993618}, "pca2": {"value": -7.984455652258632}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 7.298579894772212}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.930956}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "THA/CONI-0223/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_y": {"value": -20.00009677070624}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -17.71240198611041}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 37.23853440285752}, "tsne_x": {"value": -4.281700063497889}, "mds3": {"value": 2.7315760590957434}, "umap_x": {"value": 6.0189157}, "pca2": {"value": -9.900575049893462}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 8.949745653551766}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.852029}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C28868T"]}}}]}]}]}, {"name": "NODE_0000028", "node_attrs": {"div": 2, "num_date": {"value": 2020.0083879516815, "confidence": [2019.9886857222905, 2020.0333605750145]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/AP8/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_y": {"value": -19.212968272388075}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hubei"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.484181353761764}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.732284482914313}, "tsne_x": {"value": -5.398583554071006}, "mds3": {"value": 3.329677243693519}, "umap_x": {"value": 5.988161}, "pca2": {"value": -17.192594623150885}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.712363653066802}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.195174}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A18399G", "C23638T", "G25740T", "G25947T", "C29095T"]}}}, {"name": "NODE_0000031", "node_attrs": {"div": 2, "num_date": {"value": 2020.0092685719055, "confidence": [2019.9929577964222, 2020.0361422348037]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000589", "node_attrs": {"div": 7, "num_date": {"value": 2020.044220814181, "confidence": [2020.0356608960415, 2020.0582422344346]}}, "branch_attrs": {"mutations": {"nuc": ["C1663T", "G22661T", "C24034T", "T26729C", "G28077C"], "S": ["V367F"]}, "labels": {"aa": "S: V367F"}}, "children": [{"name": "HongKong/VM20001061-2/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.061475409836, "confidence": [2020.061475409836, 2020.061475409836]}, "tsne_y": {"value": -18.79832490917774}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.82589712974042}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.415317908817725}, "tsne_x": {"value": -5.129090076031626}, "mds3": {"value": 3.61085201237321}, "umap_x": {"value": 5.990145}, "pca2": {"value": -15.582834512924816}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.994983805901029}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.237902}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A24128-", "A24129-", "C24130-", "G24131-", "G24132-", "C24133-", "C24134-", "T24135-", "T24136-", "A24137-", "C24138-", "T24139-"], "S": ["N856-", "G857-", "L858-", "T859-"]}, "labels": {"aa": "S: N856-, G857-, L858-, T859-"}}}, {"name": "HongKong/VM20001061/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.058743169399, "confidence": [2020.058743169399, 2020.058743169399]}, "tsne_y": {"value": -18.63471398194076}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.14777142821652}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.745666955924396}, "tsne_x": {"value": -5.003444928901045}, "mds3": {"value": 2.950908710917451}, "umap_x": {"value": 5.994386}, "pca2": {"value": -12.665496283969617}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 9.331222121248516}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.886317}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C21636T", "G23607A", "T27265-", "T27266-", "T27267-", "A27268-", "A27269-", "A27270-", "G27271-", "T27272-", "T27273-", "T27274-", "C27275-", "C27276-", "A27277-", "T27278-", "T27279-", "T27280-", "G27281-", "G27282-", "A27283-", "A27284-", "T27285-", "C27286-", "T27287-", "T27288-", "G27289-", "A27290-", "T27291-"], "S": ["P25L", "R682Q"]}, "labels": {"aa": "S: P25L, R682Q"}}}]}, {"name": "NODE_0000595", "node_attrs": {"div": 6, "num_date": {"value": 2020.161331244932, "confidence": [2020.1151189442955, 2020.2011982384176]}}, "branch_attrs": {"mutations": {"nuc": ["T9477A", "C14805T", "G25979T", "C28863T"]}}, "children": [{"name": "BRA/17010/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_y": {"value": -21.082252277222107}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Rio de Janeiro"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.113292856240474}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.29907505903216}, "tsne_x": {"value": -6.065495085086988}, "mds3": {"value": 1.0212976078522575}, "umap_x": {"value": 6.0210023}, "pca2": {"value": -12.463850270519234}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 11.12603288466924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.833729}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A22T", "T444G", "A22151G", "T26258C", "G28242C"], "S": ["I197V"]}, "labels": {"aa": "S: I197V"}}}, {"name": "NODE_0000596", "node_attrs": {"div": 7, "num_date": {"value": 2020.1844874688636, "confidence": [2020.1592672903203, 2020.2117486338798]}}, "branch_attrs": {"mutations": {"nuc": ["C28657T"]}}, "children": [{"name": "PER/covper068/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_y": {"value": -21.088274339670072}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.982760745897004}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.805761780353921}, "tsne_x": {"value": -6.009641690683329}, "mds3": {"value": 0.4390505986043288}, "umap_x": {"value": 5.9540815}, "pca2": {"value": 30.924405318024665}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 8.076426966977717}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.17196}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5796T", "C29675-"]}}}, {"name": "NODE_0000036", "node_attrs": {"div": 7, "num_date": {"value": 2020.1949328960548, "confidence": [2020.1660968422498, 2020.2198521155483]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/WOR12903A862_202103451_202103451_2-4754120/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_y": {"value": -21.522203163632728}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.2.5.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -51.1466018988328}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.7048210808878}, "tsne_x": {"value": -6.055278969592334}, "mds3": {"value": -6.910553254689568}, "umap_x": {"value": 8.733768}, "pca2": {"value": -10.334860435773743}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": -1.891645033263416}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.350376}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C275T", "C1567T", "C4543T", "A5234G", "A5488G", "A8661C", "C10029T", "C11005A", "G11146T", "C12815T", "T15326C", "C16466T", "T16857C", "T18417C", "T21983-", "T21984-", "G21985-", "G21986-", "G21987-", "T21988-", "G21989-", "T21990-", "T21991-", "C22376T", "T22423C", "A22525G", "T22917G", "C23191T", "A23403G", "G24697A", "A25576G", "C25613T", "C26681T", "G27706T", "A28272T", "G28975T", "C29366T", "C29421T"], "S": ["L141-", "G142-", "V143-", "P272S", "L452R", "D614G"]}, "labels": {"aa": "S: L141-, G142-, V143-, P272S, L452R, D614G"}}}, {"name": "NODE_0000598", "node_attrs": {"div": 11, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2377296030968, 2020.2554644808743]}}, "branch_attrs": {"mutations": {"nuc": ["C4540T", "A4624G", "G26062T", "C28311T"]}}, "children": [{"name": "AUS/TAS47/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_y": {"value": -21.282590796167348}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Tasmania"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -18.764150780237152}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 49.7474291848628}, "tsne_x": {"value": -6.059848238860779}, "mds3": {"value": 2.781321979346922}, "umap_x": {"value": 6.0538836}, "pca2": {"value": -6.748474656538932}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 9.803366844993572}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.790908}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/TAS263/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2554644808743, 2020.2554644808743]}, "tsne_y": {"value": -21.267091751738025}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Tasmania"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.945064219695004}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.944736209166961}, "tsne_x": {"value": -6.059867694422255}, "mds3": {"value": 1.3346620697563765}, "umap_x": {"value": 6.0153847}, "pca2": {"value": -5.719421675818605}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 12.712626180058248}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.843684}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000040", "node_attrs": {"div": 11, "num_date": {"value": 2020.2800546448088, "confidence": [2020.2536288618787, 2020.2800546448088]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/TAS04/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.2800546448088, "confidence": [2020.2800546448088, 2020.2800546448088]}, "tsne_y": {"value": -21.279220434048128}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Tasmania"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.368784893633038}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 0.2494886855559059}, "tsne_x": {"value": -6.059242937438829}, "mds3": {"value": 1.87736835155124}, "umap_x": {"value": 6.0154223}, "pca2": {"value": -6.4008600788543655}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 12.13179893396649}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.826044}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/TAS131/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3046448087432, "confidence": [2020.3046448087432, 2020.3046448087432]}, "tsne_y": {"value": -21.28206139226794}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Tasmania"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.9357816638848}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.299376585800548}, "tsne_x": {"value": -6.058589402394327}, "mds3": {"value": 2.6537017347060896}, "umap_x": {"value": 6.02509}, "pca2": {"value": -8.481310448566845}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 11.480656161083012}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.838829}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000601", "node_attrs": {"div": 3, "num_date": {"value": 2020.0263304053183, "confidence": [2019.9990511990943, 2020.0462633920963]}}, "branch_attrs": {"mutations": {"nuc": ["C18060T"]}}, "children": [{"name": "CHN/Hefei-543/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1243169398906, "confidence": [2020.1243169398906, 2020.1243169398906]}, "tsne_y": {"value": -19.98283033693264}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "China"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.65076090603809}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.147021448553993}, "tsne_x": {"value": -5.874289518936532}, "mds3": {"value": 3.4487066891652014}, "umap_x": {"value": 5.9930754}, "pca2": {"value": -19.21912674360128}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.319086847169255}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.22606}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C4703A", "T8886C", "G10380T", "G11083T"]}}}, {"name": "USA/WA1/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_y": {"value": -19.64478766759832}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.781513953995708}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.936118046371872}, "tsne_x": {"value": -5.542538503326537}, "mds3": {"value": 2.1849905179816127}, "umap_x": {"value": 6.099322}, "pca2": {"value": 30.484613732030805}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.834297576470664}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.18788}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C23525T", "A29664G"], "S": ["H655Y"]}, "labels": {"aa": "S: H655Y"}}}, {"name": "NODE_0000058", "node_attrs": {"div": 3, "num_date": {"value": 2020.0463240414306, "confidence": [2020.0278641480418, 2020.0505464480875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-02982586-001/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_y": {"value": -19.515429781575502}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.643347107714882}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.419208942522813}, "tsne_x": {"value": -5.743184203443633}, "mds3": {"value": 1.5703726978321084}, "umap_x": {"value": 6.3202386}, "pca2": {"value": -15.585745409599978}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.013329988335124}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.604511}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/WA-CDC-WA1/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_y": {"value": -19.54129834333808}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.006002093556862}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.761759880795882}, "tsne_x": {"value": -5.730320622479509}, "mds3": {"value": 2.3400394368318502}, "umap_x": {"value": 6.2562823}, "pca2": {"value": -5.003923970099898}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.839447025420663}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.472605}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000042", "node_attrs": {"div": 3, "num_date": {"value": 2020.0441054887804, "confidence": [2020.023695340218, 2020.0483994616518]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/Yale-5643/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_y": {"value": -19.50455048340036}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.187975203481422}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.013279196275406}, "tsne_x": {"value": -5.728471966729465}, "mds3": {"value": 2.5684022225380514}, "umap_x": {"value": 6.2764807}, "pca2": {"value": -6.543289959434221}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.8102571151548585}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.511108}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000045", "node_attrs": {"div": 3, "num_date": {"value": 2020.0496250189399, "confidence": [2020.037849766402, 2020.0505464480875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA1_calu3_stock/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_y": {"value": -19.514073140983218}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.253112267672383}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.697530138743872}, "tsne_x": {"value": -5.742503750954553}, "mds3": {"value": 1.3151628174766756}, "umap_x": {"value": 6.3556495}, "pca2": {"value": -17.02079281062199}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.0142832583110675}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.710533}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/WA1-VE6-P3/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_y": {"value": -19.51100857261825}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.218604175047016}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.116611357067987}, "tsne_x": {"value": -5.735038832071221}, "mds3": {"value": 2.531831680656897}, "umap_x": {"value": 6.245072}, "pca2": {"value": -14.487338386637903}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.9007746085182924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.435535}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000047", "node_attrs": {"div": 3, "num_date": {"value": 2020.0439184301015, "confidence": [2020.017198020286, 2020.0472345694811]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA1_calu3_stocks/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0505464480875, "confidence": [2020.0505464480875, 2020.0505464480875]}, "tsne_y": {"value": -19.569361444241338}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.47153630956797}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.320920113542988}, "tsne_x": {"value": -5.699826398856064}, "mds3": {"value": 1.2612637431077602}, "umap_x": {"value": 6.296234}, "pca2": {"value": -15.366732189722049}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.300830257388059}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.62571}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A30T"]}}}, {"name": "NODE_0000048", "node_attrs": {"div": 3, "num_date": {"value": 2020.0434435007994, "confidence": [2020.0263638258095, 2020.0669398907103]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-02982585-001/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_y": {"value": -19.51779110707611}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.97047461060335}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.419208942522813}, "tsne_x": {"value": -5.742260585900633}, "mds3": {"value": 1.6984490477766332}, "umap_x": {"value": 6.3117833}, "pca2": {"value": -15.585745409599978}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.9686044750563703}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.577913}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000610", "node_attrs": {"div": 5, "num_date": {"value": 2020.077312400213, "confidence": [2020.0108859108725, 2020.1388891965632]}}, "branch_attrs": {"mutations": {"nuc": ["C17747T", "A17858G"]}}, "children": [{"name": "USA/CA-CDPH-UC1/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_y": {"value": -20.07463774593741}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.988992541495463}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.8482567272940855}, "tsne_x": {"value": -5.384037607128462}, "mds3": {"value": 1.4112016986425646}, "umap_x": {"value": 5.943717}, "pca2": {"value": -4.928796799281457}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.643455202832531}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.589713}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C5184T", "C29253T"]}}}, {"name": "NODE_0000086", "node_attrs": {"div": 5, "num_date": {"value": 2020.0766065893204, "confidence": [2020.0139686808534, 2020.152343470106]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000099", "node_attrs": {"div": 5, "num_date": {"value": 2020.126988024017, "confidence": [2020.0101804661238, 2020.1565520678855]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S243/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_y": {"value": -19.97783968603344}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.741637590715955}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.254129903398052}, "tsne_x": {"value": -5.42893471975561}, "mds3": {"value": 2.693582248439954}, "umap_x": {"value": 5.9582143}, "pca2": {"value": -11.83634793311644}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.711473567897009}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.5385065}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C28957T"]}}}, {"name": "NODE_0000055", "node_attrs": {"div": 5, "num_date": {"value": 2020.1447846314309, "confidence": [2020.0168371412597, 2020.1598360655737]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S107/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_y": {"value": -19.951917085314165}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.292791799707606}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.496292581148368}, "tsne_x": {"value": -5.444756468354833}, "mds3": {"value": 2.224523830599099}, "umap_x": {"value": 5.9707437}, "pca2": {"value": -12.02007636022548}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.711792440634172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.616555}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["T23010C"], "S": ["V483A"]}, "labels": {"aa": "S: V483A"}}}, {"name": "USA/WA-S44/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_y": {"value": -19.87883452025744}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.384239983682606}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.227116446665561}, "tsne_x": {"value": -5.500577257964408}, "mds3": {"value": 1.8116180543575489}, "umap_x": {"value": 6.0693283}, "pca2": {"value": -11.668050272932804}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.823322727432242}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.078941}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000105", "node_attrs": {"div": 5, "num_date": {"value": 2020.126992967133, "confidence": [2020.0038952498396, 2020.1479470738632]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/OR-S89/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_y": {"value": -20.06607235976605}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Oregon"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.911073639567569}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.371675319373941}, "tsne_x": {"value": -5.376590959902122}, "mds3": {"value": 2.220821375466441}, "umap_x": {"value": 5.974301}, "pca2": {"value": -12.123344408017172}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 8.073640969157296}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.344485}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C15240T", "C21774T"], "S": ["S71F"]}, "labels": {"aa": "S: S71F"}}}, {"name": "NODE_0000114", "node_attrs": {"div": 5, "num_date": {"value": 2020.1280956648363, "confidence": [2020.009431384741, 2020.154313968435]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000620", "node_attrs": {"div": 6, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1379244167724, 2020.1598360655737]}}, "branch_attrs": {"mutations": {"nuc": ["C5784T"]}}, "children": [{"name": "USA/WA-S48/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_y": {"value": -19.97834179786635}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.514344349661837}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.227248107723279}, "tsne_x": {"value": -5.432309229684311}, "mds3": {"value": 2.3846860477289304}, "umap_x": {"value": 5.9465895}, "pca2": {"value": -11.667932047006156}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.734211994598375}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.50762}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/WA-S42/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_y": {"value": -19.98307046365169}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.314849911824588}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.337517652475896}, "tsne_x": {"value": -5.436229759259993}, "mds3": {"value": 1.1261985438401283}, "umap_x": {"value": 6.054488}, "pca2": {"value": -11.91394195495934}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.258116732561062}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.955798}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000130", "node_attrs": {"div": 5, "num_date": {"value": 2020.1369961227656, "confidence": [2019.996889468018, 2020.159244415181]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000615", "node_attrs": {"div": 6, "num_date": {"value": 2020.1690283833054, "confidence": [2020.138439964765, 2020.204588108081]}}, "branch_attrs": {"mutations": {"nuc": ["A34-", "A35-", "C36T"]}}, "children": [{"name": "USA/WA-UW-1603/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.214480874317, "confidence": [2020.214480874317, 2020.214480874317]}, "tsne_y": {"value": -20.28417438634865}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.463725357251692}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.6142755129236175}, "tsne_x": {"value": -5.162190405549496}, "mds3": {"value": 1.7155194578269788}, "umap_x": {"value": 5.958368}, "pca2": {"value": -11.53305224105574}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 9.561716982250156}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.157245}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["-34T", "-35T", "C37A", "G8602A", "G26152A"]}}}, {"name": "USA/WA-UW-2193/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2281420765028, "confidence": [2020.2281420765028, 2020.2281420765028]}, "tsne_y": {"value": -20.02341380434616}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.042438338530966}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 4.90766212733112}, "tsne_x": {"value": -5.420778667995407}, "mds3": {"value": 1.5238878012045516}, "umap_x": {"value": 6.04474}, "pca2": {"value": -0.2940433272358753}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.204089040636208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.992231}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C19-", "C20-", "C21-", "A22-", "G23-", "G24-", "T25-", "A26-", "A27-", "C28-", "A29-", "A30-", "A31-", "C32-", "C33-"]}}}]}, {"name": "NODE_0000132", "node_attrs": {"div": 5, "num_date": {"value": 2020.1592752903102, "confidence": [2020.132539831023, 2020.1606360182186]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-9729/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1871584699454, "confidence": [2020.1871584699454, 2020.1871584699454]}, "tsne_y": {"value": -20.005015977875093}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.793852703286776}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.959344349775995}, "tsne_x": {"value": -5.418910220590234}, "mds3": {"value": 1.571848344246314}, "umap_x": {"value": 6.0456214}, "pca2": {"value": -5.771800050839795}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.132321027209172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.942471}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C15101T"]}}}, {"name": "NODE_0000054", "node_attrs": {"div": 5, "num_date": {"value": 2020.1625683060108, "confidence": [2020.147577057525, 2020.1625683060108]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S6/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_y": {"value": -19.87768840761627}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.402861953399755}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.201155679196377}, "tsne_x": {"value": -5.500123140437858}, "mds3": {"value": 1.8464325433539697}, "umap_x": {"value": 6.121019}, "pca2": {"value": -11.609063357540688}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.870314456995636}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.138529}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/WA-S108/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1625683060108, "confidence": [2020.1625683060108, 2020.1625683060108]}, "tsne_y": {"value": -19.878658033046545}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "A.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "A.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.215547965126847}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.337385991418157}, "tsne_x": {"value": -5.502214419197583}, "mds3": {"value": 1.1611890230323691}, "umap_x": {"value": 6.1025004}, "pca2": {"value": -11.914060180885956}, "Nextstrain_clade": {"value": "19B"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.071740475526129}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.160803}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000138", "node_attrs": {"div": 0, "num_date": {"value": 2019.9820700047387, "confidence": [2019.9435705738993, 2020.0445269567126]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000544", "node_attrs": {"div": 1, "num_date": {"value": 2020.0467265100092, "confidence": [2020.0013676570559, 2020.0873777298912]}}, "branch_attrs": {"mutations": {"nuc": ["G1440A"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0081/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -18.36445137152129}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.172869556453097}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.775526107278734}, "tsne_x": {"value": -6.305743507661115}, "mds3": {"value": 1.5488827248155144}, "umap_x": {"value": 6.1456485}, "pca2": {"value": -6.249715128484032}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.306397499560397}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.320572}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C10030T", "A27669G", "A29433G"]}}}, {"name": "NODE_0000545", "node_attrs": {"div": 2, "num_date": {"value": 2020.0778531007084, "confidence": [2020.0390898188687, 2020.1190869316974]}}, "branch_attrs": {"mutations": {"nuc": ["G2891A"]}}, "children": [{"name": "HongKong/HKPU-00037/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2363387978141, 2020.2363387978141]}, "tsne_y": {"value": -18.33406342202566}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.470510283235908}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9391084338885136}, "tsne_x": {"value": -6.276957036836439}, "mds3": {"value": 3.422920550803056}, "umap_x": {"value": 6.1180673}, "pca2": {"value": -0.2754707052852016}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.190418893686805}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.158134}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C10507T", "T25577C"]}}}, {"name": "DEU/NRW-08/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_y": {"value": -17.962122381342525}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.283503149414727}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -3.53650456647071}, "tsne_x": {"value": -6.038764614293417}, "mds3": {"value": 3.113901594245809}, "umap_x": {"value": 5.9430075}, "pca2": {"value": 0.1202597113518092}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.434420320356327}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.458835}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C4655T", "G8422A", "C22323T", "C29546A"], "S": ["S254F"]}, "labels": {"aa": "S: S254F"}}}]}]}, {"name": "NODE_0000057", "node_attrs": {"div": 0, "num_date": {"value": 2019.9905910840896, "confidence": [2019.9646846007577, 2020.0494928975963]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000533", "node_attrs": {"div": 1, "num_date": {"value": 2020.0092857631598, "confidence": [2019.9871416092178, 2020.0642076502731]}}, "branch_attrs": {"mutations": {"nuc": ["C28854T"]}}, "children": [{"name": "OM065340", "node_attrs": {"div": 3, "num_date": {"value": 2020.0642076502731, "confidence": [2020.0642076502731, 2020.0642076502731]}, "tsne_y": {"value": -18.50310158822103}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Anhui"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.855039255904593}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.161167996743194}, "tsne_x": {"value": -6.557000754809924}, "mds3": {"value": 2.131623598224768}, "umap_x": {"value": 6.2855377}, "pca2": {"value": -19.2053574021786}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.6770046655944495}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.537476}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A5084G", "G27666A"]}}}, {"name": "NODE_0000534", "node_attrs": {"div": 2, "num_date": {"value": 2020.0439724016921, "confidence": [2020.0191059753597, 2020.0758878363736]}}, "branch_attrs": {"mutations": {"nuc": ["A17423G"]}}, "children": [{"name": "OM065353", "node_attrs": {"div": 4, "num_date": {"value": 2020.0833333333333, "confidence": [2020.0833333333333, 2020.0833333333333]}, "tsne_y": {"value": -18.26133863993949}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Anhui"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.69155283506467}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.14369334523}, "tsne_x": {"value": -6.4995737227536745}, "mds3": {"value": 2.7513329532070614}, "umap_x": {"value": 6.1627593}, "pca2": {"value": -19.203423325261777}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.2754801668833866}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.280243}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A24389C", "G24390C"], "S": ["S943P"]}, "labels": {"aa": "S: S943P"}}}, {"name": "USA/MA-CDC-03038398-001/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -18.2856425680008}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.718053724279853}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.41255834595981}, "tsne_x": {"value": -6.457099426417918}, "mds3": {"value": 1.9650884373069943}, "umap_x": {"value": 6.1416416}, "pca2": {"value": -15.581301610238896}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.3846920157276545}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.312391}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["G3518T", "C24034T"]}}}]}]}, {"name": "NODE_0000060", "node_attrs": {"div": 0, "num_date": {"value": 2020.0073230058126, "confidence": [2019.9634515637563, 2020.0472004202252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000062", "node_attrs": {"div": 0, "num_date": {"value": 2020.0206826675571, "confidence": [2019.9905559428705, 2020.0541013782167]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000065", "node_attrs": {"div": 0, "num_date": {"value": 2020.061475409836, "confidence": [2020.0340210913307, 2020.061475409836]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/HZ-162/2020", "node_attrs": {"div": 0, "num_date": {"value": 2020.061475409836, "confidence": [2020.061475409836, 2020.061475409836]}, "tsne_y": {"value": -18.770973582933628}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Zhejiang"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.444046747642627}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -3.955497394880908}, "tsne_x": {"value": -6.606446451175019}, "mds3": {"value": 2.40552637248108}, "umap_x": {"value": 6.7963414}, "pca2": {"value": -0.161361395638992}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.7968949724295984}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.144148}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "CHN/HZ-551/2020", "node_attrs": {"div": 0, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_y": {"value": -18.777094622583657}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Zhejiang"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.856004685251865}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -3.955497394880908}, "tsne_x": {"value": -6.6113657889464905}, "mds3": {"value": 2.119201840951857}, "umap_x": {"value": 6.7828155}, "pca2": {"value": -0.161361395638992}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.7504178859104358}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.194923}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000067", "node_attrs": {"div": 0, "num_date": {"value": 2020.0436828837474, "confidence": [2020.0149795503428, 2020.057199965289]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000068", "node_attrs": {"div": 0, "num_date": {"value": 2020.0438767217177, "confidence": [2020.026548375871, 2020.062860549698]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/Beijing_IME-BJ05/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.0724043715848, "confidence": [2020.0724043715848, 2020.0724043715848]}, "tsne_y": {"value": -18.782895383739085}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Beijing"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.350607231218455}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.161851618476239}, "tsne_x": {"value": -6.584564963181033}, "mds3": {"value": 2.871089895953}, "umap_x": {"value": 6.36992}, "pca2": {"value": -8.8007864823197}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.4445601014513336}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.678036}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "C23520T"], "S": ["A653V"]}, "labels": {"aa": "S: A653V"}}}, {"name": "NODE_0000070", "node_attrs": {"div": 0, "num_date": {"value": 2020.060306566492, "confidence": [2020.0359537781264, 2020.0669398907103]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "TWN/CGMH-CGU-01/2020", "node_attrs": {"div": 0, "num_date": {"value": 2020.0669398907103, "confidence": [2020.0669398907103, 2020.0669398907103]}, "tsne_y": {"value": -18.766820097501835}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Taiwan"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.390392312423722}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.380050810491181}, "tsne_x": {"value": -6.622021721295946}, "mds3": {"value": 2.32571155571961}, "umap_x": {"value": 6.7135696}, "pca2": {"value": -14.001720455412766}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.8196884353462303}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.060234}, "country": {"value": "Taiwan"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "OM065356", "node_attrs": {"div": 3, "num_date": {"value": 2020.0860655737704, "confidence": [2020.0860655737704, 2020.0860655737704]}, "tsne_y": {"value": -18.68626860194184}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Anhui"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.280666892045952}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.142095355391898}, "tsne_x": {"value": -6.496127225033736}, "mds3": {"value": 3.2915438116546616}, "umap_x": {"value": 6.2355165}, "pca2": {"value": -19.20472381711776}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.6034702377565624}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.400763}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A3674G", "A18114G", "C26370T"]}}}]}]}, {"name": "NODE_0000071", "node_attrs": {"div": 0, "num_date": {"value": 2020.0601821854336, "confidence": [2020.0407920520242, 2020.0724043715848]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-03037551-001/2020", "node_attrs": {"div": 0, "num_date": {"value": 2020.0724043715848, "confidence": [2020.0724043715848, 2020.0724043715848]}, "tsne_y": {"value": -18.784383787796404}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.803527313430206}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.426930018001551}, "tsne_x": {"value": -6.615557916967536}, "mds3": {"value": 2.533694912343769}, "umap_x": {"value": 6.656536}, "pca2": {"value": -15.5604601046446}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.8817027313768704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.982067}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-"]}}}, {"name": "NODE_0000072", "node_attrs": {"div": 0, "num_date": {"value": 2020.0602789285876, "confidence": [2020.0480448431588, 2020.113387978142]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKPU-00021/2020", "node_attrs": {"div": 0, "num_date": {"value": 2020.113387978142, "confidence": [2020.113387978142, 2020.113387978142]}, "tsne_y": {"value": -18.833330769911147}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.614626121256474}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 1.5742884716207914}, "tsne_x": {"value": -6.694697912161734}, "mds3": {"value": 1.5796107630946636}, "umap_x": {"value": 7.2645893}, "pca2": {"value": 0.5931533643310808}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.052293290874198}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.823551}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000074", "node_attrs": {"div": 0, "num_date": {"value": 2020.1046950728257, "confidence": [2020.0443731568357, 2020.1215846994535]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OM065388", "node_attrs": {"div": 0, "num_date": {"value": 2020.1215846994535, "confidence": [2020.1215846994535, 2020.1215846994535]}, "tsne_y": {"value": -18.76007879498664}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Anhui"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.857657379089879}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.146309294828884}, "tsne_x": {"value": -6.625964242975745}, "mds3": {"value": 2.609133242197242}, "umap_x": {"value": 6.697902}, "pca2": {"value": -19.204588407913644}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.640975632195578}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.032011}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000075", "node_attrs": {"div": 0, "num_date": {"value": 2020.1130081231202, "confidence": [2020.0451344259905, 2020.1464474254838]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/Shanghai_CH-02/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_y": {"value": -18.477584327828467}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "China"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.302474186686349}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.371907776694773}, "tsne_x": {"value": -6.318991409526908}, "mds3": {"value": 3.663940184590888}, "umap_x": {"value": 6.1230826}, "pca2": {"value": -11.857067817693268}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.766665520991723}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.331406}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C14676T", "C19884T", "C23525T", "C28826T"], "S": ["H655Y"]}, "labels": {"aa": "S: H655Y"}}}, {"name": "NODE_0000078", "node_attrs": {"div": 0, "num_date": {"value": 2020.2797139140669, "confidence": [2020.0863132796644, 2020.3670682991317]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY_CCHE57357_A_03/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.3674863387978, "confidence": [2020.3674863387978, 2020.3674863387978]}, "tsne_y": {"value": -18.26863468626794}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.946602668812402}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.120716250181829}, "tsne_x": {"value": -6.729702477646882}, "mds3": {"value": 1.9296020405112533}, "umap_x": {"value": 6.6271434}, "pca2": {"value": -19.1954873453564}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.8548080608682482}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.972885}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A21343G", "C23081T", "A23403G"], "S": ["P507S", "D614G"]}, "labels": {"aa": "S: P507S, D614G"}}}, {"name": "NODE_0000079", "node_attrs": {"div": 0, "num_date": {"value": 2020.3264769618602, "confidence": [2020.0762376502016, 2020.4493620600092]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Rodent/CHN/C57MA14/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_y": {"value": -17.494842328961017}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "China"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.074829012718876}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.121998785641251}, "tsne_x": {"value": -6.087855796983676}, "mds3": {"value": 3.311946078763097}, "umap_x": {"value": 6.050328}, "pca2": {"value": -19.20240010673524}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 10.09185371692569}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.802186}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3264T", "C8090T", "G9471A", "C10809T", "T12879G", "A12884G", "A22812C", "A23056C", "C26309A", "C27393T"], "S": ["K417T", "Q498H"]}, "labels": {"aa": "S: K417T, Q498H"}}}, {"name": "USA/TN-VUMC-001111/2021", "node_attrs": {"div": 10, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_y": {"value": -17.88965240736435}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Tennessee"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.482493608306115}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.6011812431380985}, "tsne_x": {"value": -5.614939093712691}, "mds3": {"value": 2.031831491715672}, "umap_x": {"value": 6.0074883}, "pca2": {"value": 0.869912559845038}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 10.152284280322522}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.879387}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1005G", "T4149A", "G4205T", "T5404G", "A8107C", "T10945C", "G12647T", "A20721G", "C24096A", "T29480G"], "S": ["A845D"]}, "labels": {"aa": "S: A845D"}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000081", "node_attrs": {"div": 0, "num_date": {"value": 2020.0081355181815, "confidence": [2019.969042134279, 2020.0508569992019]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000082", "node_attrs": {"div": 0, "num_date": {"value": 2020.0218693807367, "confidence": [2019.9945209086734, 2020.0546671615487]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHN/P7-SARS-CoV-2/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.0724043715848, "confidence": [2020.0724043715848, 2020.0724043715848]}, "tsne_y": {"value": -18.78979077817848}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hunan"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.57217120654986}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -9.146604570880054}, "tsne_x": {"value": -6.618116005926996}, "mds3": {"value": 1.5396514741559846}, "umap_x": {"value": 6.716728}, "pca2": {"value": -19.20546899980653}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.2078864457769491}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.102243}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["T25525A"]}}}, {"name": "NODE_0000085", "node_attrs": {"div": 0, "num_date": {"value": 2020.0426638039003, "confidence": [2020.0135570346297, 2020.0519692208459]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000538", "node_attrs": {"div": 1, "num_date": {"value": 2020.0600620850796, "confidence": [2020.0423127206573, 2020.0668760422227]}}, "branch_attrs": {"mutations": {"nuc": ["C21707T"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}, "children": [{"name": "USA/CA-CDC-03040142-001/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -18.7828018461775}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.441773249631862}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.418691758891157}, "tsne_x": {"value": -6.584329336618978}, "mds3": {"value": 1.6142593853294387}, "umap_x": {"value": 6.608845}, "pca2": {"value": -15.578791011002416}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.812757884820675}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.870935}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C2091T"]}}}, {"name": "Finland/1/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -18.76553243276051}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Finland"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.954067412439967}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.342005848210049}, "tsne_x": {"value": -6.62713307953682}, "mds3": {"value": 2.298440822058029}, "umap_x": {"value": 6.639864}, "pca2": {"value": -1.5221965029250548}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.2198877870816147}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.983025}, "country": {"value": "Finland"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A1C"]}}}, {"name": "NODE_0000088", "node_attrs": {"div": 1, "num_date": {"value": 2020.0738836960602, "confidence": [2020.0526904770688, 2020.077868852459]}}, "branch_attrs": {"mutations": {"nuc": ["C23585-", "A23586-", "G23587-", "A23588-", "C23589-", "T23590-", "C23591-", "A23592-", "G23593-", "A23594-", "C23595-", "T23596-", "A23597-", "A23598-", "T23599-"], "S": ["Q675-", "T676-", "Q677-", "T678-", "N679-"]}, "labels": {"aa": "S: Q675-, T676-, Q677-, T678-, N679-"}}, "children": [{"name": "Finland/FIN-1-VE6-P2/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -18.7622299480088}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Finland"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.182761391475475}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.283851423492768}, "tsne_x": {"value": -6.600896940220785}, "mds3": {"value": 2.6136075308544138}, "umap_x": {"value": 6.5698166}, "pca2": {"value": 0.3834079841335571}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.610564161296753}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.88116}, "country": {"value": "Finland"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "Finland/FIN-1-VE6-P4/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -18.7826719177576}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Finland"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.873514779055283}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.283851423492771}, "tsne_x": {"value": -6.613925860869172}, "mds3": {"value": 3.116247509574598}, "umap_x": {"value": 6.5027213}, "pca2": {"value": 0.3834079841335582}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.1748496644223712}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.796154}, "country": {"value": "Finland"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000546", "node_attrs": {"div": 1, "num_date": {"value": 2020.0494871744797, "confidence": [2020.0297544752218, 2020.0947049689773]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "NODE_0000547", "node_attrs": {"div": 4, "num_date": {"value": 2020.1278060259824, "confidence": [2020.09677388413, 2020.148436351972]}}, "branch_attrs": {"mutations": {"nuc": ["G1397A", "T28688C", "G29742T"]}}, "children": [{"name": "NODE_0000550", "node_attrs": {"div": 5, "num_date": {"value": 2020.1898907103825, "confidence": [2020.1593605736305, 2020.1898907103825]}}, "branch_attrs": {"mutations": {"nuc": ["C1076T"]}}, "children": [{"name": "AUS/VIC30/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1898907103825, "confidence": [2020.1898907103825, 2020.1898907103825]}, "tsne_y": {"value": -18.27621056061384}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.645908444809265}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 0.8780610957094781}, "tsne_x": {"value": -7.457544941445687}, "mds3": {"value": -0.4193388653188576}, "umap_x": {"value": 6.673357}, "pca2": {"value": -4.154674359868027}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.597409263321363}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.908749}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000551", "node_attrs": {"div": 6, "num_date": {"value": 2020.2688063444646, "confidence": [2020.1945551905098, 2020.26912568306]}}, "branch_attrs": {"mutations": {"nuc": ["C27964T"]}}, "children": [{"name": "AUS/VIC1625/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_y": {"value": -17.979004428999517}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.318827464211292}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 7.092306496310661}, "tsne_x": {"value": -7.842042242649457}, "mds3": {"value": -0.5226688843725389}, "umap_x": {"value": 6.0036907}, "pca2": {"value": -7.397092171265899}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.774912185581809}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.977222}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5178T", "C7318T", "C11832T"]}}}, {"name": "AUS/VIC1144/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_y": {"value": -18.15289253069677}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.558866599905796}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -1.9655028813974065}, "tsne_x": {"value": -7.70715403768342}, "mds3": {"value": -0.9765991404401811}, "umap_x": {"value": 6.014046}, "pca2": {"value": -5.694105590024408}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.13259715650553}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.090422}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000175", "node_attrs": {"div": 4, "num_date": {"value": 2020.1383434677448, "confidence": [2020.108769960153, 2020.1571038251366]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR0174/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_y": {"value": -18.299649479569503}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.384992372435509}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9343335884456674}, "tsne_x": {"value": -7.597262634036051}, "mds3": {"value": -0.6931989021151501}, "umap_x": {"value": 6.127871}, "pca2": {"value": -0.1994448120266553}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.6739272794724114}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.24216}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G25618A"]}}}, {"name": "NODE_0000098", "node_attrs": {"div": 4, "num_date": {"value": 2020.1644886534402, "confidence": [2020.1083519055026, 2020.1917311926256]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PAK/SARS-CoV-2_5/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4084699453551, "confidence": [2020.4084699453551, 2020.4084699453551]}, "tsne_y": {"value": -18.033957550049973}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Punjab PK"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.27228682278269}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.139795892199832}, "tsne_x": {"value": -7.800847454807139}, "mds3": {"value": -0.6336273809105948}, "umap_x": {"value": 5.999545}, "pca2": {"value": -19.12474629301374}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.177262299799193}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.161996}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C884T", "G8653T", "C8964T", "C21639T"], "S": ["P26L"]}, "labels": {"aa": "S: P26L"}}}, {"name": "AUS/VIC996/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_y": {"value": -17.904124837238253}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.75200361518201}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 2.7807195598062866}, "tsne_x": {"value": -7.891904055689577}, "mds3": {"value": -0.7429058040443174}, "umap_x": {"value": 6.008104}, "pca2": {"value": -6.446277619749584}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 7.453536552535896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 14.880528}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C228T", "G9479T", "A9514G", "G20247T", "G26720C", "T28835C"]}}}]}]}]}, {"name": "NODE_0000195", "node_attrs": {"div": 1, "num_date": {"value": 2020.0604271844468, "confidence": [2020.042667709148, 2020.0987148588677]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/NT01/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.1407103825136, "confidence": [2020.1407103825136, 2020.1407103825136]}, "tsne_y": {"value": -18.89214097857975}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Northern Territory"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.180665446576228}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.760034145081546}, "tsne_x": {"value": -7.13501125851626}, "mds3": {"value": 2.649944431654971}, "umap_x": {"value": 6.1955237}, "pca2": {"value": -4.994375761033328}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.192222390165582}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.433403}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C3099T", "G28378T"]}}}, {"name": "NODE_0000090", "node_attrs": {"div": 1, "num_date": {"value": 2020.0768933287225, "confidence": [2020.0509597343037, 2020.1127944632103]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/Cruise-CDC-03052614-001/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.129781420765, "confidence": [2020.129781420765, 2020.129781420765]}, "tsne_y": {"value": -18.902436218635223}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.943644098587007}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.419187749989696}, "tsne_x": {"value": -7.016602337293564}, "mds3": {"value": 1.6719143463655517}, "umap_x": {"value": 6.56298}, "pca2": {"value": -15.587616252405317}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.7060310546736923}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.881887}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["G3259T"]}}}, {"name": "NODE_0000092", "node_attrs": {"div": 1, "num_date": {"value": 2020.10545238938, "confidence": [2020.013146627891, 2020.127049180328]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/DP0328/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.127049180328, "confidence": [2020.127049180328, 2020.127049180328]}, "tsne_y": {"value": -18.878643429005347}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.980660055493883}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -5.860883056966461}, "tsne_x": {"value": -6.93332900584085}, "mds3": {"value": 2.167271566695937}, "umap_x": {"value": 6.583007}, "pca2": {"value": -8.347444566274815}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.203698983994432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.952763}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000093", "node_attrs": {"div": 1, "num_date": {"value": 2020.1271045106357, "confidence": [2020.0134857352557, 2020.139979860064]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/NT05/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1489071038252, "confidence": [2020.1489071038252, 2020.1489071038252]}, "tsne_y": {"value": -18.892538908475903}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Northern Territory"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.814967735800226}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.20069360473119}, "tsne_x": {"value": -7.009784512385024}, "mds3": {"value": 2.148480750620344}, "umap_x": {"value": 6.478947}, "pca2": {"value": -7.553568548098021}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.633765562758925}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.774101}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C29635T"]}}}, {"name": "NODE_0000094", "node_attrs": {"div": 1, "num_date": {"value": 2020.1366334065542, "confidence": [2020.0168462896283, 2020.1434426229507]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/NT04/2020", "node_attrs": {"div": 1, "num_date": {"value": 2020.1434426229507, "confidence": [2020.1434426229507, 2020.1434426229507]}, "tsne_y": {"value": -18.88574701321007}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Northern Territory"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.35008452886264}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 12.861474152320543}, "tsne_x": {"value": -6.9174489338346765}, "mds3": {"value": 1.5599173380418487}, "umap_x": {"value": 6.8717546}, "pca2": {"value": -3.2888142885996303}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.302988730246061}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 17.2254}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/Cruise-CDC-03056442-001/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.1489071038252, "confidence": [2020.1489071038252, 2020.1489071038252]}, "tsne_y": {"value": -18.87907194703829}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.678753969321863}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.43165773204119}, "tsne_x": {"value": -7.05980483692866}, "mds3": {"value": 0.9865460711122664}, "umap_x": {"value": 6.503289}, "pca2": {"value": -15.595931539931213}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.8081323231889308}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.751495}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "C22033A"], "S": ["F157L"]}, "labels": {"aa": "S: F157L"}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000507", "node_attrs": {"div": 1, "num_date": {"value": 2020.0413073371471, "confidence": [2020.0144058687795, 2020.0648838805319]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "NODE_0000103", "node_attrs": {"div": 1, "num_date": {"value": 2020.0495557494005, "confidence": [2020.0286572105615, 2020.0825840733537]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/NT02/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.1407103825136, "confidence": [2020.1407103825136, 2020.1407103825136]}, "tsne_y": {"value": -18.853748476837943}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Northern Territory"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.930239518943541}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.865523202413057}, "tsne_x": {"value": -7.277374245933882}, "mds3": {"value": 1.6578116606307411}, "umap_x": {"value": 6.135319}, "pca2": {"value": -5.409763484374784}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.317681511956296}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.333025}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C9333T", "C11671T", "T11737C"]}}}, {"name": "NODE_0000104", "node_attrs": {"div": 1, "num_date": {"value": 2020.0681539668929, "confidence": [2020.0366086353895, 2020.1405612657838]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Mesocricetusauratus/HKG/8_P2/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.370218579235, "confidence": [2020.370218579235, 2020.370218579235]}, "tsne_y": {"value": -18.90955780677208}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.33293939071886}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -3.938949513103585}, "tsne_x": {"value": -6.990136882364433}, "mds3": {"value": 1.974672529377519}, "umap_x": {"value": 6.5066333}, "pca2": {"value": -0.282550673442598}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.7316572164164972}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.82247}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C8092T"]}}}, {"name": "NODE_0000510", "node_attrs": {"div": 5, "num_date": {"value": 2020.1868422928292, "confidence": [2020.1684398919617, 2020.2062253110762]}}, "branch_attrs": {"mutations": {"nuc": ["C6312A", "C13730T", "C23929T", "C28311T"]}}, "children": [{"name": "SLE/KGH-G-8604/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2554644808743, 2020.2554644808743]}, "tsne_y": {"value": -18.8561361196324}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Sierra Leone"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.205226098448994}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.193985179493947}, "tsne_x": {"value": -8.135646031793494}, "mds3": {"value": 1.815827032150345}, "umap_x": {"value": 6.099908}, "pca2": {"value": -11.259060851782513}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.585389259394916}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.24047}, "country": {"value": "Sierra Leone"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "KEN/NIC_266/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2281420765028, "confidence": [2020.2281420765028, 2020.2281420765028]}, "tsne_y": {"value": -18.841435711487456}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.6.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -13.305937573417662}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 44.07693002103153}, "tsne_x": {"value": -8.375015642016171}, "mds3": {"value": 3.492512819967258}, "umap_x": {"value": 5.9720197}, "pca2": {"value": -5.330443679083253}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.638322029942094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.292037}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C5849T", "G24882T"], "S": ["R1107M"]}, "labels": {"aa": "S: R1107M"}}}, {"name": "NODE_0000212", "node_attrs": {"div": 5, "num_date": {"value": 2020.2062627557339, "confidence": [2020.168852077596, 2020.2090163934427]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MYS/NC288/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2090163934427, "confidence": [2020.2090163934427, 2020.2090163934427]}, "tsne_y": {"value": -18.83258016799084}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.6.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Malaysia"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -7.387765989353485}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 40.35876763789433}, "tsne_x": {"value": -8.142190814940065}, "mds3": {"value": 1.2082421167838215}, "umap_x": {"value": 6.1854453}, "pca2": {"value": -1.141586779561172}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.014280343494089}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.411573}, "country": {"value": "Malaysia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000109", "node_attrs": {"div": 5, "num_date": {"value": 2020.2130627896818, "confidence": [2020.1527698566827, 2020.3239563424167]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1653/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3674863387978, "confidence": [2020.3674863387978, 2020.3674863387978]}, "tsne_y": {"value": -18.83403336348431}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.282151831104889}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 4.995315544800677}, "tsne_x": {"value": -8.369868459779168}, "mds3": {"value": 3.0606546181481566}, "umap_x": {"value": 5.9178452}, "pca2": {"value": -12.128888908005166}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 7.475803363024857}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.314833}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C10507T", "G29090T"]}}}, {"name": "NODE_0000113", "node_attrs": {"div": 5, "num_date": {"value": 2020.2385230364096, "confidence": [2020.1516582192678, 2020.3269916116635]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1583/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_y": {"value": -18.831421773533872}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.233235980051642}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.108207808342204}, "tsne_x": {"value": -8.49589023917376}, "mds3": {"value": 1.929325777111774}, "umap_x": {"value": 5.9906054}, "pca2": {"value": -8.700624618810718}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 10.671742601670193}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.064169}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3429T", "C12786T", "A13951G", "C21811T"]}}}, {"name": "IND/nimh-11076/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_y": {"value": -18.83605285918258}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.925301871667404}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.297588998575562}, "tsne_x": {"value": -8.370374042861608}, "mds3": {"value": 2.3675041523870446}, "umap_x": {"value": 5.922113}, "pca2": {"value": -5.866073877362743}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 7.957349396125287}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.4438}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C8818T", "G18397T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000515", "node_attrs": {"div": 2, "num_date": {"value": 2020.0599989250193, "confidence": [2020.040617835822, 2020.0715184547305]}}, "branch_attrs": {"mutations": {"nuc": ["G26144T"]}}, "children": [{"name": "Iceland/13/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_y": {"value": -19.22572750718048}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Iceland"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.32447787534111}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.555953897794506}, "tsne_x": {"value": -7.607399606544397}, "mds3": {"value": 0.3976598013048774}, "umap_x": {"value": 6.1656485}, "pca2": {"value": 34.1595116799692}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.3523078897684644}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.283617}, "country": {"value": "Iceland"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T7876A", "C18395T", "C21614T", "G22225T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}, {"name": "ITA/INMI1/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_y": {"value": -19.11977159254526}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Italy"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.125825845427543}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.728362585630604}, "tsne_x": {"value": -7.003112383336967}, "mds3": {"value": 2.416587480279779}, "umap_x": {"value": 6.41731}, "pca2": {"value": -12.672688081027568}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.6706237074824708}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.692947}, "country": {"value": "Italy"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A2269T"]}}}, {"name": "NODE_0000218", "node_attrs": {"div": 2, "num_date": {"value": 2020.0606862323737, "confidence": [2020.0463497897233, 2020.0806010928961]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ITA/INMI2-N/2020", "node_attrs": {"div": 2, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_y": {"value": -19.135026110858032}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Lazio"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.463174875098473}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.159613479934251}, "tsne_x": {"value": -7.118558328546739}, "mds3": {"value": 1.475705124844148}, "umap_x": {"value": 6.6543164}, "pca2": {"value": -8.831323103991679}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.828037421604653}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.938988}, "country": {"value": "Italy"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000518", "node_attrs": {"div": 3, "num_date": {"value": 2020.069370620563, "confidence": [2020.0253587190516, 2020.1402262913364]}}, "branch_attrs": {"mutations": {"nuc": ["C14805T"]}}, "children": [{"name": "NODE_0000527", "node_attrs": {"div": 4, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1168271122374, 2020.1598360655737]}}, "branch_attrs": {"mutations": {"nuc": ["T17247C"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-9008/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_y": {"value": -19.72711668917278}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.39"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.742425811350452}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 6.740495802905495}, "tsne_x": {"value": -7.557162745490074}, "mds3": {"value": 3.1809473409286664}, "umap_x": {"value": 5.9503555}, "pca2": {"value": -5.452887572140729}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.855550776054725}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.420335}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["A1515G", "C9223T"]}}}, {"name": "BRA/SP02/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_y": {"value": -19.514893833117004}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.896689319071497}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.169477904374313}, "tsne_x": {"value": -7.390240814784958}, "mds3": {"value": 2.013980366292677}, "umap_x": {"value": 6.101148}, "pca2": {"value": -14.396360310298228}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.970743192871473}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.27721}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000117", "node_attrs": {"div": 3, "num_date": {"value": 2020.0773230717537, "confidence": [2020.023772408961, 2020.1430683874787]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000525", "node_attrs": {"div": 4, "num_date": {"value": 2020.1295663843205, "confidence": [2020.0995768747864, 2020.1516769429315]}}, "branch_attrs": {"mutations": {"nuc": ["G5572T"]}}, "children": [{"name": "KOR/BA-ACH_2604/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_y": {"value": -19.55799931850101}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Korea"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.241296425376133}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.419219844432332}, "tsne_x": {"value": -7.551875563829138}, "mds3": {"value": 2.8284613790463213}, "umap_x": {"value": 6.0644107}, "pca2": {"value": -15.583877682299288}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.682583740327412}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.059734}, "country": {"value": "South Korea"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C28311T"]}}}, {"name": "KOR/2020-CoV55_Nasopharynx/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1543715846994, "confidence": [2020.1543715846994, 2020.1543715846994]}, "tsne_y": {"value": -19.60423729459554}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Korea"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.403547847608804}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -7.876595461481486}, "tsne_x": {"value": -7.478583851015389}, "mds3": {"value": 1.4541751994457988}, "umap_x": {"value": 6.0678606}, "pca2": {"value": -14.803361141982364}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 3.734891268243996}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.250462}, "country": {"value": "South Korea"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["T3142C"]}}}]}, {"name": "NODE_0000119", "node_attrs": {"div": 3, "num_date": {"value": 2020.1047717624165, "confidence": [2020.018932246962, 2020.1463719687981]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000529", "node_attrs": {"div": 4, "num_date": {"value": 2020.211411654417, "confidence": [2020.1479539688173, 2020.2117486338798]}}, "branch_attrs": {"mutations": {"nuc": ["G28842T"]}}, "children": [{"name": "AUS/VIC169/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_y": {"value": -19.52137357551433}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.652713339256042}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.186796808984958}, "tsne_x": {"value": -7.390879170127868}, "mds3": {"value": 2.687280824114895}, "umap_x": {"value": 6.162028}, "pca2": {"value": -1.9585431482781257}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.7337910554502}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.318476}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "JOR/SEARCH-0051-JOR/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2581967213114, "confidence": [2020.2581967213114, 2020.2581967213114]}, "tsne_y": {"value": -19.67348728121124}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Amman"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -7.996511744885442}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 12.153086938280724}, "tsne_x": {"value": -7.570434425210268}, "mds3": {"value": -0.8544409856411593}, "umap_x": {"value": 6.137294}, "pca2": {"value": 33.434136810174564}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.5040429840236564}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.315666}, "country": {"value": "Jordan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2048T", "T7270C"]}}}]}, {"name": "NODE_0000121", "node_attrs": {"div": 3, "num_date": {"value": 2020.1296061717542, "confidence": [2020.0153969273974, 2020.149741299475]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/TAS78/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2226775956285, "confidence": [2020.2226775956285, 2020.2226775956285]}, "tsne_y": {"value": -19.8325943240663}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Tasmania"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.416630622253589}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": 6.946513088264459}, "tsne_x": {"value": -7.637293347770075}, "mds3": {"value": 2.6357439554205344}, "umap_x": {"value": 5.9544325}, "pca2": {"value": -6.526095054387572}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.059527250766337}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.329802}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["T1368C", "C6990T", "C20736T", "C23707T"]}}}, {"name": "NODE_0000519", "node_attrs": {"div": 5, "num_date": {"value": 2020.1600739436599, "confidence": [2020.1298575619714, 2020.1753360271102]}}, "branch_attrs": {"mutations": {"nuc": ["A2480G", "C2558T"]}}, "children": [{"name": "ISR/hCov-19-Israel-CVL-n3030/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1844262295083, "confidence": [2020.1844262295083, 2020.1844262295083]}, "tsne_y": {"value": -19.942418533956385}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Israel"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.432808316711}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.829003637734968}, "tsne_x": {"value": -7.83360430487426}, "mds3": {"value": 0.9004608009930204}, "umap_x": {"value": 5.935121}, "pca2": {"value": 9.554547406278465}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.704737570067513}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.378742}, "country": {"value": "Israel"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1623C", "C11074T"]}}}, {"name": "NODE_0000123", "node_attrs": {"div": 5, "num_date": {"value": 2020.168919364605, "confidence": [2020.1397220391625, 2020.1924477809114]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000124", "node_attrs": {"div": 5, "num_date": {"value": 2020.1856186046198, "confidence": [2020.1467576861792, 2020.2109825326106]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-9012/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_y": {"value": -19.959500462043245}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.55723004345945}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.921552964503619}, "tsne_x": {"value": -7.829663300950576}, "mds3": {"value": 3.0901820449684774}, "umap_x": {"value": 6.0324492}, "pca2": {"value": -5.633729826614615}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 4.467579359074634}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.219855}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["G13183A", "C17977T"]}}}, {"name": "NGA/CV156/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_y": {"value": -19.763454361494887}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.648477555141763}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.112574809058383}, "tsne_x": {"value": -7.633227610336036}, "mds3": {"value": 2.9482592811682355}, "umap_x": {"value": 5.9927998}, "pca2": {"value": -11.080899440598868}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 2.9673112999827445}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.665321}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000125", "node_attrs": {"div": 5, "num_date": {"value": 2020.1695839575293, "confidence": [2020.146054083036, 2020.196336978044]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "POL/PL_MCB_12/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.266393442623, "confidence": [2020.266393442623, 2020.266393442623]}, "tsne_y": {"value": -20.020983788136576}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Poland"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.465422473905086}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -5.704851255985465}, "tsne_x": {"value": -7.894295327831232}, "mds3": {"value": 1.994884952110324}, "umap_x": {"value": 5.9335513}, "pca2": {"value": -3.3583728781449445}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 6.442171001194997}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.254657}, "country": {"value": "Poland"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C2644T", "C12525T", "C18885A"]}}}, {"name": "NODE_0000127", "node_attrs": {"div": 5, "num_date": {"value": 2020.1841714077223, "confidence": [2020.1446445594015, 2020.1978650929873]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/D6/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2090163934427, "confidence": [2020.2090163934427, 2020.2090163934427]}, "tsne_y": {"value": -20.017095354167267}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.716761988167802}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.840183176865452}, "tsne_x": {"value": -7.905074344762147}, "mds3": {"value": 3.310091326142925}, "umap_x": {"value": 6.018496}, "pca2": {"value": 19.61510120150915}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.390156961555094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.101408}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "T26665C", "T29748C"]}}}, {"name": "NGA/CV262/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2609289617487, "confidence": [2020.2609289617487, 2020.2609289617487]}, "tsne_y": {"value": -19.95131025113466}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.40"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.989236881595808}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -8.789766680662327}, "tsne_x": {"value": -7.8226085326193475}, "mds3": {"value": 1.7755049262740623}, "umap_x": {"value": 5.9079647}, "pca2": {"value": -18.40748413321506}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 5.529254107213721}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 15.383445}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {"nuc": ["C11020T", "C25460T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000502", "node_attrs": {"div": 1, "num_date": {"value": 2019.9126304736596, "confidence": [2019.7646216905569, 2019.9200595495315]}}, "branch_attrs": {"mutations": {"nuc": ["C3037T"]}}, "children": [{"name": "NODE_0000503", "node_attrs": {"div": 4, "num_date": {"value": 2020.0763786862392, "confidence": [2020.0472133236644, 2020.0806010928961]}}, "branch_attrs": {"mutations": {"nuc": ["C17074T", "C27213T", "T27384C"]}}, "children": [{"name": "AUS/SA04/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_y": {"value": -17.602460151760297}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Australia"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.618406851475478}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -4.920294945636844}, "tsne_x": {"value": -6.7914374474231325}, "mds3": {"value": 3.2083522492141325}, "umap_x": {"value": 6.3964934}, "pca2": {"value": -5.6223793189543}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 0.820523253751392}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.623363}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/SA01/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_y": {"value": -17.615683382345846}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Australia"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.522249068760184}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.422988975950576}, "tsne_x": {"value": -6.797237297839747}, "mds3": {"value": 1.2478444234301385}, "umap_x": {"value": 6.6763597}, "pca2": {"value": -9.06181234676036}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.5820431813031788}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.93709}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/SA03/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_y": {"value": -17.6090737713457}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Australia"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.917359124301781}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.6125799330632855}, "tsne_x": {"value": -6.791511295696005}, "mds3": {"value": 2.786709419121768}, "umap_x": {"value": 6.463301}, "pca2": {"value": -8.910589003505656}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.1563721727748972}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.630522}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/SA02/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.0806010928961, "confidence": [2020.0806010928961, 2020.0806010928961]}, "tsne_y": {"value": -17.62275120378394}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "8"}, "division": {"value": "South Australia"}, "umap_label_for_Nextstrain_clade": {"value": "5"}, "Nextclade_pango_collapsed": {"value": "B"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.789894207889021}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "8"}, "pca1": {"value": -6.6125799330632855}, "tsne_x": {"value": -6.793079263834305}, "mds3": {"value": 2.533944188319944}, "umap_x": {"value": 6.537401}, "pca2": {"value": -8.910589003505656}, "Nextstrain_clade": {"value": "19A"}, "t-sne_label_for_Nextstrain_clade": {"value": "7"}, "mds2": {"value": 1.2081633302046106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "5"}, "umap_y": {"value": 16.741297}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "8"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000490", "node_attrs": {"div": 3, "num_date": {"value": 2019.9218898244737, "confidence": [2019.849325973843, 2019.9345521803089]}}, "branch_attrs": {"mutations": {"nuc": ["C241T", "A23403G"], "S": ["D614G"]}, "labels": {"aa": "S: D614G"}}, "children": [{"name": "NODE_0000238", "node_attrs": {"div": 3, "num_date": {"value": 2020.0439819940354, "confidence": [2019.99158103959, 2020.0696865816822]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DEU/BavPat1-ChVir929/2020", "node_attrs": {"div": 3, "num_date": {"value": 2020.0751366120219, "confidence": [2020.0751366120219, 2020.0751366120219]}, "tsne_y": {"value": -11.14341001844115}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bavaria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.359242557812691}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.9337763826506817}, "tsne_x": {"value": -7.5381159961644}, "mds3": {"value": 2.7300962444794514}, "umap_x": {"value": 7.5670834}, "pca2": {"value": -0.2599686383078399}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.9015931275991068}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.159534}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000131", "node_attrs": {"div": 3, "num_date": {"value": 2020.049710692115, "confidence": [2020.0202672431299, 2020.0742749290457]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000492", "node_attrs": {"div": 4, "num_date": {"value": 2020.077868852459, "confidence": [2020.0577173739744, 2020.077868852459]}}, "branch_attrs": {"mutations": {"nuc": ["G6446A"]}}, "children": [{"name": "OU072896", "node_attrs": {"div": 4, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -11.261764299689286}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bavaria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.024949272941821}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.204697616208645}, "tsne_x": {"value": -7.537556609792076}, "mds3": {"value": 2.4207980134195344}, "umap_x": {"value": 7.487145}, "pca2": {"value": -11.175147011810257}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.738473146470336}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.092978}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "DEU/BavPat4-ChVir1019/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.077868852459, "confidence": [2020.077868852459, 2020.077868852459]}, "tsne_y": {"value": -11.255487030875711}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bavaria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.7274290209946024}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.114899968677752}, "tsne_x": {"value": -7.512558092536371}, "mds3": {"value": 2.068813896598936}, "umap_x": {"value": 7.4883027}, "pca2": {"value": -8.952480162983004}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.9489414768388}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.135954}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000494", "node_attrs": {"div": 9, "num_date": {"value": 2020.5833333333333, "confidence": [2020.5638115138274, 2020.5833333333333]}}, "branch_attrs": {"mutations": {"nuc": ["C14362T", "G15907A", "T17091C", "G25563T", "G26257T", "A29871G"]}}, "children": [{"name": "EGY/EGY-70/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6407103825136, "confidence": [2020.6407103825136, 2020.6407103825136]}, "tsne_y": {"value": -11.99540280182403}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.5832524973138185}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.254385822246749}, "mds3": {"value": 1.6873460040092696}, "umap_x": {"value": 7.524752}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.013702745792316}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.705303}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/EGY-025/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6188524590164, "confidence": [2020.6188524590164, 2020.6188524590164]}, "tsne_y": {"value": -11.999579295764295}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.741460324438146}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.255064256045366}, "mds3": {"value": 2.451031117000978}, "umap_x": {"value": 7.4391317}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.8390515906169407}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.612064}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/Egy-S019/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.5833333333333, "confidence": [2020.5833333333333, 2020.5833333333333]}, "tsne_y": {"value": -11.999618351064385}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.69527814290448}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.255593674239747}, "mds3": {"value": 2.426339801143719}, "umap_x": {"value": 7.358064}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.776370079712122}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.621223}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/Egy-S007/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.5833333333333, "confidence": [2020.5833333333333, 2020.5833333333333]}, "tsne_y": {"value": -12.000065603107794}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.42075740359212}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.253082129848768}, "mds3": {"value": 3.2021430142507064}, "umap_x": {"value": 7.407382}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.712614708984849}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.60279}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000245", "node_attrs": {"div": 9, "num_date": {"value": 2020.6007103825136, "confidence": [2020.5599518207075, 2020.6356154640043]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY-86/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6407103825136, "confidence": [2020.6407103825136, 2020.6407103825136]}, "tsne_y": {"value": -11.999757944144026}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.69102098500818}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.2555157537264225}, "mds3": {"value": 2.4256945967479138}, "umap_x": {"value": 7.414933}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.7739515376939874}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.62599}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000246", "node_attrs": {"div": 9, "num_date": {"value": 2020.6317508884201, "confidence": [2020.599371654972, 2020.6407103825136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY-78/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6407103825136, "confidence": [2020.6407103825136, 2020.6407103825136]}, "tsne_y": {"value": -11.995444976519629}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.583256843633175}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.254476283961876}, "mds3": {"value": 1.6873467528338348}, "umap_x": {"value": 7.458208}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.013696630813895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.746752}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000247", "node_attrs": {"div": 9, "num_date": {"value": 2020.6398727057056, "confidence": [2020.6176046759053, 2020.649277659183]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY-136/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_y": {"value": -11.999566940012231}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.0958915402095775}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.2554151649191785}, "mds3": {"value": 1.9181188535161369}, "umap_x": {"value": 7.4131403}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.923795032024772}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.646885}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000134", "node_attrs": {"div": 9, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6332536953041, 2020.6516393442623]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/EGY-135/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_y": {"value": -11.999543405003788}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.095891202664657}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.2556505779235816}, "mds3": {"value": 1.9181187109207336}, "umap_x": {"value": 7.444756}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.9237955532341755}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.656034}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "EGY/EGY-117/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_y": {"value": -11.999611516671257}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.6910209844205415}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.617112007575586}, "tsne_x": {"value": -3.255405102617232}, "mds3": {"value": 2.4256945959303}, "umap_x": {"value": 7.308059}, "pca2": {"value": -10.7338123716049}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.773951538675483}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.59071}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}, {"name": "NODE_0000383", "node_attrs": {"div": 4, "num_date": {"value": 2019.9329356895682, "confidence": [2019.8746816989717, 2019.9364826728272]}}, "branch_attrs": {"mutations": {"nuc": ["C14408T"]}}, "children": [{"name": "NODE_0000621", "node_attrs": {"div": 5, "num_date": {"value": 2019.9376927955395, "confidence": [2019.8895501459135, 2019.948559965432]}}, "branch_attrs": {"mutations": {"nuc": ["G25563T"]}}, "children": [{"name": "NODE_0000137", "node_attrs": {"div": 5, "num_date": {"value": 2020.045396104988, "confidence": [2019.9807199305358, 2020.1314672174274]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000626", "node_attrs": {"div": 7, "num_date": {"value": 2020.1853858091783, "confidence": [2020.1422774978391, 2020.217213114754]}}, "branch_attrs": {"mutations": {"nuc": ["C1594T", "C11109T"]}}, "children": [{"name": "AUS/VIC1198/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_y": {"value": -10.742862484901112}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.22"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.161566760805964}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 7.251743224720275}, "tsne_x": {"value": -6.6408481992238615}, "mds3": {"value": 4.155595165218016}, "umap_x": {"value": 7.5070267}, "pca2": {"value": -5.140764658433014}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.531925675744786}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.607786}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C8290T", "C18788T", "G29399T"]}}}, {"name": "NZL/20VR1277/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_y": {"value": -10.66278325207638}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.22"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.077100815651345}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.943405218758688}, "tsne_x": {"value": -6.450049192393678}, "mds3": {"value": 2.522302979958908}, "umap_x": {"value": 7.57932}, "pca2": {"value": -0.3862123054963352}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.623365762426046}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.03294}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000139", "node_attrs": {"div": 5, "num_date": {"value": 2020.060244532328, "confidence": [2020.0091997290685, 2020.1335781494581]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000636", "node_attrs": {"div": 6, "num_date": {"value": 2020.1622472304423, "confidence": [2020.1082476179329, 2020.2381274643997]}}, "branch_attrs": {"mutations": {"nuc": ["C2416T"]}}, "children": [{"name": "NODE_0000637", "node_attrs": {"div": 7, "num_date": {"value": 2020.2082883462735, "confidence": [2020.1512796237473, 2020.264225828734]}}, "branch_attrs": {"mutations": {"nuc": ["G8371T"]}}, "children": [{"name": "PAK/SARS-CoV-2_92/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.2882513661202, "confidence": [2020.2882513661202, 2020.2882513661202]}, "tsne_y": {"value": -9.98954564133263}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Khyber Pakhtunkhwa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.018389961164505}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.118129192384457}, "tsne_x": {"value": -7.022587068063487}, "mds3": {"value": 5.840566652510867}, "umap_x": {"value": 7.499238}, "pca2": {"value": -19.21226143438934}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.153522371911293}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.977891}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1101T", "G3231T", "G11083T", "G19999T", "C22477T", "C24442T"]}}}, {"name": "BHR/40062405/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.7581967213114, "confidence": [2020.7581967213114, 2020.7581967213114]}, "tsne_y": {"value": -10.44488087418032}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.214971529639643}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 4.138351201370384}, "tsne_x": {"value": -6.615635800465338}, "mds3": {"value": 2.8729599760750024}, "umap_x": {"value": 7.54176}, "pca2": {"value": -7.69815031719908}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.0757607275863283}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.458395}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C2937T"]}}}]}, {"name": "NODE_0000142", "node_attrs": {"div": 6, "num_date": {"value": 2020.1842928780738, "confidence": [2020.1563987374414, 2020.2458367775482]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AK200/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2800546448088, "confidence": [2020.2800546448088, 2020.2800546448088]}, "tsne_y": {"value": -10.415535672413132}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Alaska"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.2697528078843487}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.431428593947802}, "tsne_x": {"value": -6.681265433153793}, "mds3": {"value": 2.180406456179674}, "umap_x": {"value": 7.645328}, "pca2": {"value": -12.361968879128243}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.221027391434034}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.27546}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C4755T", "C20148T", "G26233T"]}}}, {"name": "NODE_0000143", "node_attrs": {"div": 6, "num_date": {"value": 2020.2113038334044, "confidence": [2020.1725378640333, 2020.2584275123622]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR2556/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2882513661202, "confidence": [2020.2882513661202, 2020.2882513661202]}, "tsne_y": {"value": -10.451468073083737}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.013002496926448}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.923691972166421}, "tsne_x": {"value": -6.659894642742373}, "mds3": {"value": 4.240484731111987}, "umap_x": {"value": 7.456172}, "pca2": {"value": -0.2674853497198526}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.002158669710742}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.867764}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A1953G", "C14786T", "G20578T"]}}}, {"name": "USA/FL-BPHL-1183/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.6352459016393, "confidence": [2020.6352459016393, 2020.6352459016393]}, "tsne_y": {"value": -10.276106551621588}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.787895981562732}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.851651203110043}, "tsne_x": {"value": -6.798070317917293}, "mds3": {"value": 3.5875587994666254}, "umap_x": {"value": 7.5325565}, "pca2": {"value": -10.068391207225591}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.686849378485264}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.618645}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C16616T", "C26885T", "C27603T", "C28887T"]}}}]}]}]}, {"name": "NODE_0000144", "node_attrs": {"div": 5, "num_date": {"value": 2020.062372299202, "confidence": [2020.0257986788688, 2020.1359128348]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000145", "node_attrs": {"div": 5, "num_date": {"value": 2020.1618773599464, "confidence": [2019.973336645405, 2020.2064728046096]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000628", "node_attrs": {"div": 7, "num_date": {"value": 2020.2005505654806, "confidence": [2020.1542998696589, 2020.2250790618846]}}, "branch_attrs": {"mutations": {"nuc": ["G1319A", "C8389T"]}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0052/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_y": {"value": -10.687765119627532}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.209370604210651}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.06513409325238}, "tsne_x": {"value": -6.372321696992364}, "mds3": {"value": 3.884994907609408}, "umap_x": {"value": 7.481536}, "pca2": {"value": 12.753388105622312}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.292886023260225}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.123333}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C5310T"]}}}, {"name": "NODE_0000629", "node_attrs": {"div": 8, "num_date": {"value": 2020.2354051349369, "confidence": [2020.2092330871349, 2020.2472677595629]}}, "branch_attrs": {"mutations": {"nuc": ["C25810T"]}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0094/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_y": {"value": -10.68648831951889}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.267287688433492}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.004781153353986}, "tsne_x": {"value": -6.380616759712478}, "mds3": {"value": 3.122667185154141}, "umap_x": {"value": 7.560198}, "pca2": {"value": 11.588295688019311}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.0599431029496085}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.435255}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000265", "node_attrs": {"div": 8, "num_date": {"value": 2020.2485098337802, "confidence": [2020.2326023214569, 2020.2527322404371]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Talagante-PUC_MVL_0118/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2527322404371, "confidence": [2020.2527322404371, 2020.2527322404371]}, "tsne_y": {"value": -10.684727256949468}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.3567609384706816}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.07309107727318}, "tsne_x": {"value": -6.387458111557248}, "mds3": {"value": 2.874309229930004}, "umap_x": {"value": 7.6109424}, "pca2": {"value": 12.753613421142196}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.368826577086141}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.605843}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-PUC_MVL_0175/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2800546448088, "confidence": [2020.2800546448088, 2020.2800546448088]}, "tsne_y": {"value": -10.691064238244184}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.110"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.568618141819026}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.025977516457317}, "tsne_x": {"value": -6.376103292476394}, "mds3": {"value": 3.541526664075716}, "umap_x": {"value": 7.547334}, "pca2": {"value": 12.436511055677432}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.9963938244230017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.43352}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000148", "node_attrs": {"div": 5, "num_date": {"value": 2020.2076709269468, "confidence": [2020.1138480717132, 2020.293864034516]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000624", "node_attrs": {"div": 7, "num_date": {"value": 2020.3229760463182, "confidence": [2020.2418901071833, 2020.3335874390245]}}, "branch_attrs": {"mutations": {"nuc": ["C5284T", "G29744A"]}}, "children": [{"name": "Colombia/UW20120787349/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.9330601092897, "confidence": [2020.9330601092897, 2020.9330601092897]}, "tsne_y": {"value": -9.488543232935545}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.871894062827211}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.02452423582472}, "tsne_x": {"value": -6.7469744199756025}, "mds3": {"value": 4.460610917710262}, "umap_x": {"value": 7.5297565}, "pca2": {"value": 30.39217845805321}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.014017328897191}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.751322}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1059T", "C16611T", "C17285T", "C19610T", "T23031C", "G25593A", "G25906T", "G27877A", "G28166A", "G28899T"], "S": ["F490S"]}, "labels": {"aa": "S: F490S"}}}, {"name": "EGY/CUNCI-HGC008/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3346994535518, "confidence": [2020.3346994535518, 2020.3346994535518]}, "tsne_y": {"value": -11.031515407674874}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.334461033009408}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.434739791363796}, "tsne_x": {"value": -6.278304369660569}, "mds3": {"value": 2.65760002031037}, "umap_x": {"value": 7.6309237}, "pca2": {"value": 3.076719786897299}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.230071136823638}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.735138}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C28849T"]}}}]}, {"name": "NODE_0000153", "node_attrs": {"div": 5, "num_date": {"value": 2020.2451279514585, "confidence": [2020.185005623984, 2020.3023212144412]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000154", "node_attrs": {"div": 5, "num_date": {"value": 2020.3046448087432, "confidence": [2020.2661186538435, 2020.3046448087432]}}, "branch_attrs": {"mutations": {"nuc": ["T241-"]}}, "children": [{"name": "FRA/IHUCOVID-011567_Illu1/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.3046448087432, "confidence": [2020.3046448087432, 2020.3046448087432]}, "tsne_y": {"value": -10.71827277613466}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -2.793147616088402}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 43.718336338526605}, "tsne_x": {"value": -6.453464341338306}, "mds3": {"value": 0.7064310198503899}, "umap_x": {"value": 7.6780906}, "pca2": {"value": 10.81473286904775}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.8920473913951388}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.360563}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G242-"]}}}, {"name": "EGY/CPHL-NRC-14/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_y": {"value": -10.66908310105546}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.892794964792115}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 0.035611904542413}, "tsne_x": {"value": -6.502321004595668}, "mds3": {"value": 1.910951009349412}, "umap_x": {"value": 7.613209}, "pca2": {"value": 7.289509722742196}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.7829977082405418}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.320719}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["-241T"]}}}]}, {"name": "NODE_0000633", "node_attrs": {"div": 6, "num_date": {"value": 2020.2983250419015, "confidence": [2020.2362270033007, 2020.3424684130348]}}, "branch_attrs": {"mutations": {"nuc": ["C26735T"]}}, "children": [{"name": "NODE_0000156", "node_attrs": {"div": 6, "num_date": {"value": 2020.334182526185, "confidence": [2020.2995014282506, 2020.3456284153006]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV081737", "node_attrs": {"div": 7, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_y": {"value": -11.406974925411118}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.735695255728635}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.134936323919476}, "tsne_x": {"value": -6.099272004495915}, "mds3": {"value": 2.915043155994854}, "umap_x": {"value": 7.5758314}, "pca2": {"value": -19.20635986723852}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.840079408391737}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.78574}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C"]}}}, {"name": "OU990210", "node_attrs": {"div": 6, "num_date": {"value": 2020.3456284153006, "confidence": [2020.3456284153006, 2020.3456284153006]}, "tsne_y": {"value": -11.130768486776404}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.542857894868142}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.133123986966954}, "tsne_x": {"value": -6.257766295193036}, "mds3": {"value": 3.3543279146441294}, "umap_x": {"value": 7.608776}, "pca2": {"value": -19.20207465965047}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.485142503858566}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.600399}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000635", "node_attrs": {"div": 7, "num_date": {"value": 2020.326064802736, "confidence": [2020.2657030315365, 2020.3694706823726]}}, "branch_attrs": {"mutations": {"nuc": ["C28887T"]}}, "children": [{"name": "OV081845", "node_attrs": {"div": 12, "num_date": {"value": 2020.4002732240438, "confidence": [2020.4002732240438, 2020.4002732240438]}, "tsne_y": {"value": -11.70358558996037}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.094015206289102}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.130089160441466}, "tsne_x": {"value": -5.055615858057258}, "mds3": {"value": 3.781443446279286}, "umap_x": {"value": 7.5742035}, "pca2": {"value": -19.20757815595262}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.339743124096068}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.70272}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6990T", "C8092T", "T14313C", "G23403A", "G24193T"], "S": ["G614D"]}, "labels": {"aa": "S: G614D"}}}, {"name": "OV005900", "node_attrs": {"div": 12, "num_date": {"value": 2020.6434426229507, "confidence": [2020.6434426229507, 2020.6434426229507]}, "tsne_y": {"value": -11.495510364950809}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.6976430428270963}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.155467095461111}, "tsne_x": {"value": -5.254649375340357}, "mds3": {"value": 2.3445792421712093}, "umap_x": {"value": 7.57983}, "pca2": {"value": -18.864949982126323}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.671859108896574}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.19995}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C10340T", "C12747T", "C18490T", "C25578T", "C29708T"]}}}]}]}]}]}]}, {"name": "NODE_0000641", "node_attrs": {"div": 6, "num_date": {"value": 2020.1038393743547, "confidence": [2020.0091048645302, 2020.138506374231]}}, "branch_attrs": {"mutations": {"nuc": ["C18877T"]}}, "children": [{"name": "NODE_0000159", "node_attrs": {"div": 6, "num_date": {"value": 2020.161915938616, "confidence": [2020.1099192338636, 2020.1938418340453]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NM-UNM-00116/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2527322404371, "confidence": [2020.2527322404371, 2020.2527322404371]}, "tsne_y": {"value": -11.376223562308578}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -2.1638513380052573}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 39.08756183893923}, "tsne_x": {"value": -6.153806999058653}, "mds3": {"value": 0.7969021507536981}, "umap_x": {"value": 7.5855517}, "pca2": {"value": -10.447279424020088}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.6914428381831511}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.185219}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G4148T", "A20465G"]}}}, {"name": "NODE_0000160", "node_attrs": {"div": 6, "num_date": {"value": 2020.1842640654165, "confidence": [2020.141723864333, 2020.196606130715]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/CPHL-NRC-22/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.198087431694, "confidence": [2020.198087431694, 2020.198087431694]}, "tsne_y": {"value": -11.273980660165456}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.048241162430108}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.148143601008878}, "tsne_x": {"value": -6.217826804480373}, "mds3": {"value": 2.709606720176314}, "umap_x": {"value": 7.6035337}, "pca2": {"value": -11.572401702657476}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.514865360447612}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.857277}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C19524T"]}}}, {"name": "NODE_0000163", "node_attrs": {"div": 6, "num_date": {"value": 2020.1938539194027, "confidence": [2020.1469061729927, 2020.2493579071818]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Mexico/BCN-SEARCH-102881/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_y": {"value": -11.45295256651746}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Baja California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.615294335700154}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.75982062413619}, "tsne_x": {"value": -5.497535946852108}, "mds3": {"value": 1.821966226415344}, "umap_x": {"value": 7.440431}, "pca2": {"value": 23.12029831061084}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.63301780314424}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.848771}, "country": {"value": "Mexico"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1096G", "C1101T", "C11208T", "G14874T", "T17379C", "G25538T", "G25912T", "C29085T"]}}}, {"name": "NODE_0000164", "node_attrs": {"div": 6, "num_date": {"value": 2020.3224027367812, "confidence": [2020.2204854636611, 2020.4536991911928]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000649", "node_attrs": {"div": 10, "num_date": {"value": 2020.4920586924452, "confidence": [2020.4084242257538, 2020.5368852459017]}}, "branch_attrs": {"mutations": {"nuc": ["C10507T", "G15380T", "T22016C", "C29614T"], "S": ["W152R"]}, "labels": {"aa": "S: W152R"}}, "children": [{"name": "Colombia/UW20112280712/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8920765027322, "confidence": [2020.8920765027322, 2020.8920765027322]}, "tsne_y": {"value": -11.889846877541146}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.96730283197799}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.020912804057204}, "tsne_x": {"value": -4.560997680178367}, "mds3": {"value": 1.222651601139619}, "umap_x": {"value": 7.4565125}, "pca2": {"value": 30.399441029491147}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.677234664371702}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.073299}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G2513C", "C3653T", "C9246T", "C18647T", "C20178T", "C28923T"]}}}, {"name": "COL/RSEC-00003C/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_y": {"value": -11.82139568536276}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.115223053937359}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -0.7435758845436452}, "tsne_x": {"value": -4.715290293802847}, "mds3": {"value": 2.920162877819535}, "umap_x": {"value": 7.558429}, "pca2": {"value": -0.0046573378318482}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.920592484563078}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.895033}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A17994G", "C22591T"]}}}]}, {"name": "NODE_0000166", "node_attrs": {"div": 6, "num_date": {"value": 2020.3622861648994, "confidence": [2020.2705349497032, 2020.4624772384375]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WI-UW-595/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_y": {"value": -11.425230909551075}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Wisconsin"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.1916517537983475}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.924500057632877}, "tsne_x": {"value": -5.914360746258979}, "mds3": {"value": 2.796234247164323}, "umap_x": {"value": 7.5884657}, "pca2": {"value": -0.2689170821756089}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.415076321212441}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.655008}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C619T", "C1380T", "T7513C", "T15354C"]}}}, {"name": "NODE_0000169", "node_attrs": {"div": 6, "num_date": {"value": 2020.4247125459713, "confidence": [2020.2742989859944, 2020.5687757697744]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/GA-EHC-845O/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_y": {"value": -11.445799970196608}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.436"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Georgia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.8337037782205257}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.063685600426057}, "tsne_x": {"value": -5.963703863756091}, "mds3": {"value": 3.0105405346430136}, "umap_x": {"value": 7.581006}, "pca2": {"value": -13.98533648051514}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.539376872967819}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.686615}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T6612C", "G26109T", "C28890T", "T29710A"]}}}, {"name": "NZL/20CV0670/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.938524590164, "confidence": [2020.938524590164, 2020.938524590164]}, "tsne_y": {"value": -11.76528814148677}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.647868222276236}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.922991680336639}, "tsne_x": {"value": -6.781729705517658}, "mds3": {"value": 13.294139360819706}, "umap_x": {"value": 7.884566}, "pca2": {"value": -0.2741656739220108}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -14.291417610598408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.119808}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5833T", "C10207T", "T11525C", "T12811C", "C16375A", "G16741T", "C18501T", "A25864G", "T27299C", "T28229C", "C28977T", "T29233C"]}}}]}]}]}]}]}]}, {"name": "NODE_0000173", "node_attrs": {"div": 6, "num_date": {"value": 2020.1060781788312, "confidence": [2020.0129090332146, 2020.1434212804318]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV044773", "node_attrs": {"div": 11, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_y": {"value": -11.318778334740069}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.9"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Makkah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.562983177292165}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.225163746704822}, "tsne_x": {"value": -6.290037063732478}, "mds3": {"value": 3.187607369498456}, "umap_x": {"value": 7.5813723}, "pca2": {"value": -11.71345483129264}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.907237445495417}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.655176}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C2113T", "C7765T", "C17690T", "A21137G", "A29871T"]}}}, {"name": "NODE_0000650", "node_attrs": {"div": 7, "num_date": {"value": 2020.1368848890131, "confidence": [2020.1068698007757, 2020.146174863388]}}, "branch_attrs": {"mutations": {"nuc": ["C26735T"]}}, "children": [{"name": "SAU/627/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.146174863388, "confidence": [2020.146174863388, 2020.146174863388]}, "tsne_y": {"value": -11.90679457457104}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Saudi Arabia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.10304672474197}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.132530584800804}, "tsne_x": {"value": -5.966327391488286}, "mds3": {"value": 3.1525894806716086}, "umap_x": {"value": 7.526647}, "pca2": {"value": -19.203273521049937}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.853021062354402}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.517023}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C1549T"]}}}, {"name": "NODE_0000291", "node_attrs": {"div": 7, "num_date": {"value": 2020.1838223998393, "confidence": [2020.1380547810272, 2020.222820966228]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000662", "node_attrs": {"div": 8, "num_date": {"value": 2020.32971044701, "confidence": [2020.1613414553933, 2020.5544605815173]}}, "branch_attrs": {"mutations": {"nuc": ["C28887T"]}}, "children": [{"name": "NODE_0000663", "node_attrs": {"div": 21, "num_date": {"value": 2020.9002732240438, "confidence": [2020.8544255704207, 2020.9002732240438]}}, "branch_attrs": {"mutations": {"nuc": ["T4579A", "T7771C", "C8733T", "G12793A", "C14670T", "G14718A", "C16915T", "G20691A", "G21305A", "A23586G", "T24202C", "G25775T", "T26130C"], "S": ["Q675R"]}, "labels": {"aa": "S: Q675R"}}, "children": [{"name": "NZL/20CV0607/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.9002732240438, "confidence": [2020.9002732240438, 2020.9002732240438]}, "tsne_y": {"value": -6.587324212676124}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.471"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.343679129939211}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9382143891017294}, "tsne_x": {"value": -7.638472875105462}, "mds3": {"value": 11.45089233586099}, "umap_x": {"value": 8.248215}, "pca2": {"value": -0.2829942577008701}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -19.22987166553417}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.57922}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20CV0625/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.9139344262296, "confidence": [2020.9139344262296, 2020.9139344262296]}, "tsne_y": {"value": -6.587012022292511}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.471"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.86843461724957}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.940440423039579}, "tsne_x": {"value": -7.638734561242353}, "mds3": {"value": 3.08688884714597}, "umap_x": {"value": 8.2477}, "pca2": {"value": -0.2825941306736978}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.2130284842686754}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.565578}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000664", "node_attrs": {"div": 9, "num_date": {"value": 2020.4117569309944, "confidence": [2020.2537188253468, 2020.613641456983]}}, "branch_attrs": {"mutations": {"nuc": ["C17012T"]}}, "children": [{"name": "NZL/21CV0188/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.3301369863013, "confidence": [2021.3301369863013, 2021.3301369863013]}, "tsne_y": {"value": -9.63619620844336}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.466.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.85148864154325}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9403470313396727}, "tsne_x": {"value": -7.384022060881306}, "mds3": {"value": -0.075667005768493}, "umap_x": {"value": 8.612049}, "pca2": {"value": -0.1156123169123435}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.23900778613211}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.7640915}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "C3096T", "A3207T", "C3768T", "G4142A", "C5184T", "A10323G", "A10978T", "C11195T", "A11782G", "C12880T", "T22219C", "C22879A", "C23604G", "C25561G", "G26426T", "C29718T", "C29743T", "A29797G"], "S": ["N439K", "P681R"]}, "labels": {"aa": "S: N439K, P681R"}}}, {"name": "NODE_0000665", "node_attrs": {"div": 17, "num_date": {"value": 2020.7431115362301, "confidence": [2020.688876315176, 2020.7581967213114]}}, "branch_attrs": {"mutations": {"nuc": ["T606C", "C1060T", "G3431T", "C7086T", "C10507T", "C26060T", "T26735C", "G29081A"]}}, "children": [{"name": "COL/RSEC-00001A/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7581967213114, "confidence": [2020.7581967213114, 2020.7581967213114]}, "tsne_y": {"value": -13.104016245565331}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.22645836713814}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9170678880788414}, "tsne_x": {"value": -3.899195267416702}, "mds3": {"value": 7.309770439235461}, "umap_x": {"value": 7.4174824}, "pca2": {"value": -0.2730941593935601}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.852210449747434}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.226196}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "COL/RSEC-00002B/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_y": {"value": -13.110958709802178}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.111"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.214935903948552}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.917245408240823}, "tsne_x": {"value": -3.893515102829724}, "mds3": {"value": 3.595426735681148}, "umap_x": {"value": 7.4430246}, "pca2": {"value": -0.2711342586284339}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.886027651893105}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.095539}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G25644T"]}}}]}]}]}, {"name": "NODE_0000179", "node_attrs": {"div": 7, "num_date": {"value": 2020.1855501247278, "confidence": [2020.157830736816, 2020.2279262966556]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000181", "node_attrs": {"div": 7, "num_date": {"value": 2020.2106007468915, "confidence": [2020.1483173702024, 2020.293269884385]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000658", "node_attrs": {"div": 8, "num_date": {"value": 2020.2813429867329, "confidence": [2020.184794123066, 2020.366727500445]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "OV081820", "node_attrs": {"div": 11, "num_date": {"value": 2020.4439890710382, "confidence": [2020.4439890710382, 2020.4439890710382]}, "tsne_y": {"value": -12.08647707986995}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.535366552814578}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.133410434873618}, "tsne_x": {"value": -5.851278619176743}, "mds3": {"value": 2.7819110488362715}, "umap_x": {"value": 7.5972857}, "pca2": {"value": -19.20970613469653}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.500951634177212}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.433338}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C6449T", "C9165T", "C17738T"]}}}, {"name": "PAK/SARS-CoV-2_67/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4112021857923, "confidence": [2020.4112021857923, 2020.4112021857923]}, "tsne_y": {"value": -12.088758920945882}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Punjab PK"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.584186682554456}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.02546434683157}, "tsne_x": {"value": -6.149517930355001}, "mds3": {"value": 2.809293124416412}, "umap_x": {"value": 7.3991885}, "pca2": {"value": -19.21508008064836}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.102546185840139}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.90428}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3003G", "C5826T", "C13170T", "G19525T", "C25571T", "G26849T"]}}}]}, {"name": "NODE_0000184", "node_attrs": {"div": 7, "num_date": {"value": 2020.2369649155528, "confidence": [2020.163392875214, 2020.2946444791992]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000186", "node_attrs": {"div": 7, "num_date": {"value": 2020.2799033362203, "confidence": [2020.2131608765535, 2020.3046448087432]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU993966", "node_attrs": {"div": 9, "num_date": {"value": 2020.3046448087432, "confidence": [2020.3046448087432, 2020.3046448087432]}, "tsne_y": {"value": -12.030014884587352}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.451421002520508}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.134286994947978}, "tsne_x": {"value": -5.879547789703817}, "mds3": {"value": 3.8211572081992986}, "umap_x": {"value": 7.4100513}, "pca2": {"value": -19.20922621798652}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.326289203990775}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.892488}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "C8782T"]}}}, {"name": "NODE_0000187", "node_attrs": {"div": 7, "num_date": {"value": 2020.2905282743047, "confidence": [2020.2607157752745, 2020.3216874004688]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV279/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3346994535518, "confidence": [2020.3346994535518, 2020.3346994535518]}, "tsne_y": {"value": -11.917778178515604}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.462"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.074449712395852}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.439099902059828}, "tsne_x": {"value": -5.935469194338511}, "mds3": {"value": 3.878444379702249}, "umap_x": {"value": 7.5038857}, "pca2": {"value": -16.953697302452554}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.17586131959432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.083586}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C3811T", "T27265-", "T27266-", "T27267-", "A27268-", "A27269-", "A27270-", "G27271-", "T27272-", "T27273-", "T27274-", "C27275-", "C27276-", "A27277-", "T27278-", "T27279-", "T27280-", "G27281-", "G27282-", "A27283-", "A27284-", "T27285-", "C27286-", "T27287-", "T27288-", "G27289-", "A27290-", "T27291-"]}}}, {"name": "NODE_0000189", "node_attrs": {"div": 7, "num_date": {"value": 2020.3235148780489, "confidence": [2020.29373317558, 2020.3237704918033]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC93/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_y": {"value": -11.8195425235744}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gujarat"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.632680426140724}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.319587170692451}, "tsne_x": {"value": -6.011497250683752}, "mds3": {"value": 2.6125890792131488}, "umap_x": {"value": 7.638912}, "pca2": {"value": -2.6872314985058297}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.477429578903146}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.033184}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000193", "node_attrs": {"div": 7, "num_date": {"value": 2020.3632971754903, "confidence": [2020.2871294203421, 2020.478926201766]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV090808", "node_attrs": {"div": 8, "num_date": {"value": 2020.4931693989072, "confidence": [2020.4931693989072, 2020.4931693989072]}, "tsne_y": {"value": -11.923572518814783}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Makkah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.630537535283915}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.479328263477427}, "tsne_x": {"value": -5.971644546555139}, "mds3": {"value": 1.970540368476259}, "umap_x": {"value": 7.596569}, "pca2": {"value": -13.396335559684642}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.9858497700070497}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.7451}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C28054T"]}}}, {"name": "OU998977", "node_attrs": {"div": 11, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_y": {"value": -12.052889619490394}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.146706600998682}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.150645948815365}, "tsne_x": {"value": -6.740224362213053}, "mds3": {"value": 4.151106465393669}, "umap_x": {"value": 7.48753}, "pca2": {"value": -19.098689760314084}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.2001319431152893}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.9021}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "C12312T", "T25563G", "G29751T"]}}}]}]}]}]}, {"name": "NODE_0000666", "node_attrs": {"div": 9, "num_date": {"value": 2020.329437068665, "confidence": [2020.239255523519, 2020.4439628991245]}}, "branch_attrs": {"mutations": {"nuc": ["C4543T", "G28975T"]}}, "children": [{"name": "NZL/20CV0480/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8073770491803, "confidence": [2020.8073770491803, 2020.8073770491803]}, "tsne_y": {"value": -11.873040762455814}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.523"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.20150564765175}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9265821917960415}, "tsne_x": {"value": -5.257495207511229}, "mds3": {"value": 7.978766729582918}, "umap_x": {"value": 7.734148}, "pca2": {"value": -0.2565338086571352}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.0561738334084643}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.427443}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A2214G", "C6190T", "A8257C", "C10582T", "C20930T", "G23611T", "G28178T", "C29614T"]}}}, {"name": "NODE_0000667", "node_attrs": {"div": 21, "num_date": {"value": 2020.6571038251366, "confidence": [2020.6121679647522, 2020.6571038251366]}}, "branch_attrs": {"mutations": {"nuc": ["G5629T", "G9526T", "C11497T", "G13993T", "G15766T", "A16889G", "G17019T", "G22992A", "C25710T", "T26876C", "T28975C", "G29399A"], "S": ["S477N"]}, "labels": {"aa": "S: S477N"}}, "children": [{"name": "FRA/IHUCOVID-035642_Nova1/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.6571038251366, "confidence": [2020.6571038251366, 2020.6571038251366]}, "tsne_y": {"value": -13.705945098752458}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.98790025447032}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -0.2423956796974413}, "tsne_x": {"value": -2.445934014470546}, "mds3": {"value": 4.091798663494269}, "umap_x": {"value": 8.08898}, "pca2": {"value": 10.722997508410147}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 6.511310697907372}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.781441}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000197", "node_attrs": {"div": 21, "num_date": {"value": 2020.6579540483096, "confidence": [2020.620099364143, 2020.7484324843967]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000669", "node_attrs": {"div": 22, "num_date": {"value": 2020.711398843971, "confidence": [2020.6448190665053, 2020.798879748899]}}, "branch_attrs": {"mutations": {"nuc": ["C27434T"]}}, "children": [{"name": "Switzerland/BS-ETHZ-380388/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.8948087431695, "confidence": [2020.8948087431695, 2020.8948087431695]}, "tsne_y": {"value": -13.709676886724136}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Basel-Stadt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.61260402851136}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.312117415377077}, "tsne_x": {"value": -2.4386706293574223}, "mds3": {"value": 4.110986637948453}, "umap_x": {"value": 8.579963}, "pca2": {"value": 0.256452875694783}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 11.691110526564438}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.933468}, "country": {"value": "Switzerland"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G2265A", "C7504T", "C21691T", "C25000T", "G25606T"]}}}, {"name": "NZL/20CV0613/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.9030054644809, "confidence": [2020.9030054644809, 2020.9030054644809]}, "tsne_y": {"value": -13.71155491006069}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.94423576548752}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.6141252764613663}, "tsne_x": {"value": -2.437085172125812}, "mds3": {"value": 3.090200792880532}, "umap_x": {"value": 8.581969}, "pca2": {"value": -0.2455803298942697}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 10.813079995861177}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.896402}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C11095T", "G15664T", "C17502T", "C17747T", "G29757T"]}}}]}, {"name": "NODE_0000200", "node_attrs": {"div": 21, "num_date": {"value": 2020.6999384250037, "confidence": [2020.6193332560747, 2020.7691373313785]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU470800", "node_attrs": {"div": 28, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_y": {"value": -13.729099045997556}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Friuli Venezia Giulia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.826982837888693}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.09256294348642}, "tsne_x": {"value": -2.4319596843429547}, "mds3": {"value": 1.7737645296549742}, "umap_x": {"value": 8.585922}, "pca2": {"value": 23.555798035600763}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 9.986771690534614}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.903297}, "country": {"value": "Italy"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T241C", "C503T", "C6525T", "T8167C", "C18591A", "G18803T", "G26720T"]}}}, {"name": "TUN/TUN-202061600/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.8948087431695, "confidence": [2020.8948087431695, 2020.8948087431695]}, "tsne_y": {"value": -13.711071046817803}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.160"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Tunisia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -30.343070817059072}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.779002575022536}, "tsne_x": {"value": -2.440062207821772}, "mds3": {"value": 2.448257059881953}, "umap_x": {"value": 8.564554}, "pca2": {"value": -18.38945141379812}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 10.804131879083338}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.960326}, "country": {"value": "Tunisia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3686T", "C9866A", "G22225T", "G25681A", "G28079T", "A28521G"]}}}]}]}]}]}]}]}, {"name": "NODE_0000203", "node_attrs": {"div": 7, "num_date": {"value": 2020.2088275634865, "confidence": [2020.1594861972037, 2020.2314595709413]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000205", "node_attrs": {"div": 7, "num_date": {"value": 2020.233606557377, "confidence": [2020.2069255884594, 2020.233606557377]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV064930", "node_attrs": {"div": 7, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_y": {"value": -11.84100177469246}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.116126982417013}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.132901568378566}, "tsne_x": {"value": -6.020490261398688}, "mds3": {"value": 2.851901213143986}, "umap_x": {"value": 7.577388}, "pca2": {"value": -19.20315541881225}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.445618590025799}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.773966}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "OV040221", "node_attrs": {"div": 7, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -11.821764931766214}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.919229515641194}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.132901568378566}, "tsne_x": {"value": -6.015180472585481}, "mds3": {"value": 3.4045374841027187}, "umap_x": {"value": 7.5201764}, "pca2": {"value": -19.20315541881225}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.667072623642576}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.560871}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000210", "node_attrs": {"div": 7, "num_date": {"value": 2020.2189711573706, "confidence": [2020.160831323601, 2020.255673339025]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU998640", "node_attrs": {"div": 9, "num_date": {"value": 2020.2636612021859, "confidence": [2020.2636612021859, 2020.2636612021859]}, "tsne_y": {"value": -11.990002529686777}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Makkah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.912126207117895}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.505779426474897}, "tsne_x": {"value": -5.904228637732139}, "mds3": {"value": 2.9789412567233646}, "umap_x": {"value": 7.5039926}, "pca2": {"value": -19.12490842562361}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.925391771788772}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.313982}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C84T", "G23403A"], "S": ["G614D"]}, "labels": {"aa": "S: G614D"}}}, {"name": "NODE_0000672", "node_attrs": {"div": 8, "num_date": {"value": 2020.248986114944, "confidence": [2020.1955602441776, 2020.366903447717]}}, "branch_attrs": {"mutations": {"nuc": ["C28854T"]}}, "children": [{"name": "NODE_0000673", "node_attrs": {"div": 9, "num_date": {"value": 2020.3264371735097, "confidence": [2020.2385540588775, 2020.407686103938]}}, "branch_attrs": {"mutations": {"nuc": ["A28900C"]}}, "children": [{"name": "EGY/EGY_CCHE57357_A_46/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5887978142077, 2020.5887978142077]}, "tsne_y": {"value": -12.598924591856026}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.57376826662403}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.113889013612132}, "tsne_x": {"value": -6.640342026756213}, "mds3": {"value": 3.8359063383947793}, "umap_x": {"value": 7.4155784}, "pca2": {"value": -19.2064357770724}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.9276767258015228}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.132592}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A2646T", "T10852C", "T14408C", "A19971G", "T21567A", "C23127T", "C29578T"], "S": ["F2Y", "A522V"]}, "labels": {"aa": "S: F2Y, A522V"}}}, {"name": "EGY/EGY_CCHE57357_P_17/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.50956284153, "confidence": [2020.50956284153, 2020.50956284153]}, "tsne_y": {"value": -12.170774931553332}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.388518015000528}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.172435744223447}, "tsne_x": {"value": -5.333544230011923}, "mds3": {"value": 2.8119918575867926}, "umap_x": {"value": 7.4108872}, "pca2": {"value": -19.09029528630965}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.8730960408740125}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.39817}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "A8301C", "A11782T", "T16224C", "C17012T", "G22346A", "G29778T"], "S": ["A262T"]}, "labels": {"aa": "S: A262T"}}}]}, {"name": "NODE_0000674", "node_attrs": {"div": 9, "num_date": {"value": 2020.3010186406357, "confidence": [2020.2498758237825, 2020.3871310377172]}}, "branch_attrs": {"mutations": {"nuc": ["C22444T"]}}, "children": [{"name": "NODE_0000320", "node_attrs": {"div": 9, "num_date": {"value": 2020.327124240811, "confidence": [2020.2497708049932, 2020.3965602951448]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000690", "node_attrs": {"div": 10, "num_date": {"value": 2020.4115038931454, "confidence": [2020.300530466816, 2020.518475359852]}}, "branch_attrs": {"mutations": {"nuc": ["C25844T"]}}, "children": [{"name": "OV009900", "node_attrs": {"div": 17, "num_date": {"value": 2020.6434426229507, "confidence": [2020.6434426229507, 2020.6434426229507]}, "tsne_y": {"value": -12.434017290178884}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -14.74955678076948}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -2.862795170248229}, "tsne_x": {"value": -6.835099594499653}, "mds3": {"value": 4.773731376796789}, "umap_x": {"value": 7.4221597}, "pca2": {"value": -17.88763587153469}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1927918895849114}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.609854}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3653T", "C10833T", "C16580T", "T18877C", "G19072T", "C26882T", "C29466T"]}}}, {"name": "NZL/20CV0542/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8483606557377, "confidence": [2020.8483606557377, 2020.8483606557377]}, "tsne_y": {"value": -12.67507499062926}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.24"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.94636480678528}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.894412755693307}, "tsne_x": {"value": -6.142115372678241}, "mds3": {"value": 6.0773256914985945}, "umap_x": {"value": 7.617167}, "pca2": {"value": -0.2642597172795024}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.948227076630237}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.413463}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A6464G", "A10108G", "G17140T", "G22201T", "G27047T", "G29348T", "G29405C"]}}}]}, {"name": "NODE_0000699", "node_attrs": {"div": 10, "num_date": {"value": 2020.3641964258293, "confidence": [2020.2940375657442, 2020.3971234422677]}}, "branch_attrs": {"mutations": {"nuc": ["T1947C"]}}, "children": [{"name": "AUS/VIC1822/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.405737704918, "confidence": [2020.405737704918, 2020.405737704918]}, "tsne_y": {"value": -13.113807200821023}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.23702986304196}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.017132992424575}, "tsne_x": {"value": -5.771854100434006}, "mds3": {"value": 5.700565835600275}, "umap_x": {"value": 7.3391924}, "pca2": {"value": 8.41345005744203}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.273648766838258}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.047494}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C9195A", "C13989T", "C21658T"]}}}, {"name": "NODE_0000216", "node_attrs": {"div": 10, "num_date": {"value": 2020.3831200200818, "confidence": [2020.2710990591784, 2020.4659342897257]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000217", "node_attrs": {"div": 10, "num_date": {"value": 2020.413552917471, "confidence": [2020.2688892913948, 2020.4662058589554]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/Isolate4549/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4959016393443, "confidence": [2020.4959016393443, 2020.4959016393443]}, "tsne_y": {"value": -13.271555743416956}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.185799048913015}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.606560740187057}, "tsne_x": {"value": -5.747261962387331}, "mds3": {"value": 3.8159051236675774}, "umap_x": {"value": 7.366205}, "pca2": {"value": -18.11765670080546}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.04342461217162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.962028}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1973T", "T5719C", "T18588C", "C29870A"]}}}, {"name": "NODE_0000702", "node_attrs": {"div": 11, "num_date": {"value": 2020.4654788571697, "confidence": [2020.2949377754933, 2020.5928077472317]}}, "branch_attrs": {"mutations": {"nuc": ["G23593T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}, "children": [{"name": "IND/GBRC562a/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_y": {"value": -13.069717218380916}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.678921206962873}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.55035600387827}, "tsne_x": {"value": -4.969325148850935}, "mds3": {"value": 12.205769535795572}, "umap_x": {"value": 8.3658085}, "pca2": {"value": -3.616293328972054}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -23.908656540981152}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.293235}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3052A", "C5812T", "A7506G", "C8460A", "G9434T", "G9623T", "A18459G", "T21992-", "A21993-", "T21994-", "G25785T", "G25793A", "C26801T", "G27948T", "G28373T"], "S": ["Y144-"]}, "labels": {"aa": "S: Y144-"}}}, {"name": "IND/GBRC436/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.922131147541, "confidence": [2020.922131147541, 2020.922131147541]}, "tsne_y": {"value": -13.628601611830923}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gujarat"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.874040764791133}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.506990040163968}, "tsne_x": {"value": -6.290938002420741}, "mds3": {"value": 3.142126799755103}, "umap_x": {"value": 8.398472}, "pca2": {"value": 0.8537175361870387}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.908051193030314}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.361101}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "T8158C", "C13694T", "G18090A", "G20006T", "G21255T", "G25500T", "C27128T", "T27384C", "C28603T", "G28812T", "G29134A"]}}}]}]}, {"name": "NODE_0000219", "node_attrs": {"div": 10, "num_date": {"value": 2020.4628935249898, "confidence": [2020.2372032769301, 2020.67396239068]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000704", "node_attrs": {"div": 11, "num_date": {"value": 2020.5931298385706, "confidence": [2020.36126409219, 2020.7934726564513]}}, "branch_attrs": {"mutations": {"nuc": ["G23587C"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}, "children": [{"name": "IND/GBRC475a/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.957650273224, "confidence": [2020.957650273224, 2020.957650273224]}, "tsne_y": {"value": -13.565597805811809}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.16765494264972}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.572896428814024}, "tsne_x": {"value": -6.107851180130941}, "mds3": {"value": 5.547320154801947}, "umap_x": {"value": 8.3325205}, "pca2": {"value": -3.730036376227592}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.395186191878913}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.464889}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1884T", "G2272A", "G5008T", "G6320A", "C6701T", "C8832T", "C8917T", "G15444T", "G19656T", "G25909T", "G28280T"]}}}, {"name": "NZL/21MV0134/2021", "node_attrs": {"div": 15, "num_date": {"value": 2021.1794520547944, "confidence": [2021.1794520547944, 2021.1794520547944]}, "tsne_y": {"value": -13.233803266918402}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -8.651616491904075}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 55.52771854964055}, "tsne_x": {"value": -5.768132612747037}, "mds3": {"value": -0.9878177618782182}, "umap_x": {"value": 7.4000626}, "pca2": {"value": 0.6718189114876232}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 8.09262091054245}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.9663105}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C335T", "G11222T", "G12274A", "T25556G"]}}}]}, {"name": "NODE_0000700", "node_attrs": {"div": 12, "num_date": {"value": 2020.5882943108008, "confidence": [2020.3853595542973, 2020.6885441855047]}}, "branch_attrs": {"mutations": {"nuc": ["C6310T", "C12546T"]}}, "children": [{"name": "NZL/20CV0521/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8401639344263, "confidence": [2020.8401639344263, 2020.8401639344263]}, "tsne_y": {"value": -13.48102971921946}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.412704573868343}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.585561305865313}, "tsne_x": {"value": -6.033624494782565}, "mds3": {"value": 1.1425186622215415}, "umap_x": {"value": 7.8166795}, "pca2": {"value": 17.318774360420836}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.6273610336544575}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.292319}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1661T", "T2482C", "C12501T", "A13938G", "A23476G", "C24912T", "G28655T"], "S": ["T1117I"]}, "labels": {"aa": "S: T1117I"}}}, {"name": "BTN/RCDC0019-SV200575/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.6898907103825, "confidence": [2020.6898907103825, 2020.6898907103825]}, "tsne_y": {"value": -13.097812829472232}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bhutan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.021289341808387}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 5.7975757969325965}, "tsne_x": {"value": -5.878163973776616}, "mds3": {"value": 4.1602104987287865}, "umap_x": {"value": 7.4353223}, "pca2": {"value": -9.465557443341677}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.764313765178416}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.042354}, "country": {"value": "Bhutan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3213G", "G5230T"]}}}]}]}]}]}]}, {"name": "NODE_0000225", "node_attrs": {"div": 9, "num_date": {"value": 2020.3272748779705, "confidence": [2020.248434743078, 2020.3949944161088]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000691", "node_attrs": {"div": 10, "num_date": {"value": 2020.3632917096252, "confidence": [2020.2870840954265, 2020.4149897039765]}}, "branch_attrs": {"mutations": {"nuc": ["C2836T"]}}, "children": [{"name": "BGD/BCSIR_NILMRC_216/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_y": {"value": -12.819448313049271}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.05208375368007}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.126059838558334}, "tsne_x": {"value": -5.39665579394997}, "mds3": {"value": 6.295820151176715}, "umap_x": {"value": 7.4148245}, "pca2": {"value": -19.21038262398172}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.411098821206175}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.7093725}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "T3836A", "G4504T", "C14708T", "C23114A"], "S": ["L518I"]}, "labels": {"aa": "S: L518I"}}}, {"name": "NODE_0000232", "node_attrs": {"div": 10, "num_date": {"value": 2020.3728683886845, "confidence": [2020.2914817580286, 2020.427532595716]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC-383a/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4631147540983, "confidence": [2020.4631147540983, 2020.4631147540983]}, "tsne_y": {"value": -12.875348757983057}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gujarat"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.649102001100616}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.05474524640207}, "tsne_x": {"value": -5.333185647326661}, "mds3": {"value": 4.864706912925435}, "umap_x": {"value": 7.3947415}, "pca2": {"value": 4.204404295029396}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.876141645803499}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.690845}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T14408C", "T14501C", "T21582C", "C23997T", "T24811A"], "S": ["L7S", "P812L", "H1083Q"]}, "labels": {"aa": "S: L7S, P812L, H1083Q"}}}, {"name": "NODE_0000233", "node_attrs": {"div": 10, "num_date": {"value": 2020.4641501088588, "confidence": [2020.2288013067396, 2020.7286082600024]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/NGRI-R4-OR18/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_y": {"value": -12.810113458251688}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.37180858276318}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.036953588029507}, "tsne_x": {"value": -5.356210194252808}, "mds3": {"value": 5.852188166363345}, "umap_x": {"value": 7.4211693}, "pca2": {"value": -11.323440657511052}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.503981950429701}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.395371}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1170T", "C12400T", "A22173T", "T22174C", "C29284T"], "S": ["Y204F"]}, "labels": {"aa": "S: Y204F"}}}, {"name": "IND/GBRC558a/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.0287671232877, "confidence": [2021.0287671232877, 2021.0287671232877]}, "tsne_y": {"value": -12.73913351109678}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.8"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.655203664043192}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.482693396032019}, "tsne_x": {"value": -4.918944304323322}, "mds3": {"value": 6.645481166627489}, "umap_x": {"value": 7.6377215}, "pca2": {"value": -3.340966695851947}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.3635836270801963}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.689206}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1857A", "G10705T", "G16078A", "T22861C", "G22992A", "C25844T", "G26217T", "T28705C"], "S": ["S477N"]}, "labels": {"aa": "S: S477N"}}}]}]}]}, {"name": "NODE_0000235", "node_attrs": {"div": 9, "num_date": {"value": 2020.335044338426, "confidence": [2020.2545701516956, 2020.404915445303]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000236", "node_attrs": {"div": 9, "num_date": {"value": 2020.3634009383056, "confidence": [2020.2522247619117, 2020.4091559255817]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV009581", "node_attrs": {"div": 13, "num_date": {"value": 2020.4658469945355, "confidence": [2020.4658469945355, 2020.4658469945355]}, "tsne_y": {"value": -12.825453657586074}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.15294712320739}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.11623354887046}, "tsne_x": {"value": -5.779577095648187}, "mds3": {"value": 4.767592419590629}, "umap_x": {"value": 7.411851}, "pca2": {"value": -19.206870656201204}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.770500327687072}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.000505}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1684T", "A23931G", "A26449G", "G27364T"], "S": ["K790R"]}, "labels": {"aa": "S: K790R"}}}, {"name": "NODE_0000695", "node_attrs": {"div": 14, "num_date": {"value": 2020.5147694334794, "confidence": [2020.347475274611, 2020.634452303473]}}, "branch_attrs": {"mutations": {"nuc": ["C3267T", "C21034T", "G26173T", "G28183T", "T28277C"]}}, "children": [{"name": "IND/KA-NIMH-SEQ-116/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.031506849315, "confidence": [2021.031506849315, 2021.031506849315]}, "tsne_y": {"value": -8.0935683434354}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Karnataka"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.669970495724515}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.417833809080235}, "tsne_x": {"value": -8.479091467915367}, "mds3": {"value": 17.887981402501033}, "umap_x": {"value": 8.486661}, "pca2": {"value": -9.791370271163771}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -23.20200340283352}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.213695}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3695T", "A3841T", "C5901T", "C6401T", "T7099C", "C7108T", "C9344T", "G11998A", "C18400T", "G18412T", "C25658T", "C26256T", "C28708T", "A29768G"]}}}, {"name": "NODE_0000696", "node_attrs": {"div": 15, "num_date": {"value": 2020.571844413034, "confidence": [2020.3896069309287, 2020.6628867589725]}}, "branch_attrs": {"mutations": {"nuc": ["T22882G"], "S": ["N440K"]}, "labels": {"aa": "S: N440K"}}, "children": [{"name": "NZL/20CV0437/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.801912568306, "confidence": [2020.801912568306, 2020.801912568306]}, "tsne_y": {"value": -12.626715074506167}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.36.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -10.765884653737478}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 52.07924312985524}, "tsne_x": {"value": -6.4681951397162765}, "mds3": {"value": 12.711842971158529}, "umap_x": {"value": 8.311742}, "pca2": {"value": -3.389625004782534}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -21.733791785106217}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.41563}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1567T", "C4012A", "C15540T", "C17123T", "C20091T", "G23593T", "C25587T", "G28798A"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}, {"name": "IND/KA-NIMH-SEQ-83/2020", "node_attrs": {"div": 26, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_y": {"value": -13.037926276067353}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Karnataka"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.606770711774514}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.437679765448293}, "tsne_x": {"value": -6.476547077608301}, "mds3": {"value": 14.132184904570485}, "umap_x": {"value": 8.560734}, "pca2": {"value": -9.852920027130375}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -26.85038782815606}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.9016285}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G4300T", "C9857T", "C10336T", "C12076T", "G14250T", "C14583T", "G15672T", "C24026T", "G25135C", "T26038A", "G26062T"], "S": ["L822F", "K1191N"]}, "labels": {"aa": "S: L822F, K1191N"}}}]}]}]}, {"name": "NODE_0000239", "node_attrs": {"div": 9, "num_date": {"value": 2020.366339926109, "confidence": [2020.2549086222493, 2020.4144479890288]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV090780", "node_attrs": {"div": 15, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_y": {"value": -12.67592323885297}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Makkah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.368210862538277}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.679878193225681}, "tsne_x": {"value": -5.564205670095895}, "mds3": {"value": 7.246004484891553}, "umap_x": {"value": 7.3722744}, "pca2": {"value": -18.536292721829536}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.2891414546220883}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.6726265}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1692C", "T3037C", "A8636G", "C9924T", "C10582T", "A26127G"]}}}, {"name": "NODE_0000240", "node_attrs": {"div": 9, "num_date": {"value": 2020.4577531731268, "confidence": [2020.1918386832037, 2020.6486380542483]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000241", "node_attrs": {"div": 9, "num_date": {"value": 2020.4711144235127, "confidence": [2020.1989201421106, 2020.6602722308514]}}, "branch_attrs": {"mutations": {"nuc": ["A22190-", "T22191-", "T22192-"], "S": ["I210-"]}, "labels": {"aa": "S: I210-"}}, "children": [{"name": "NODE_0000676", "node_attrs": {"div": 20, "num_date": {"value": 2020.853825136612, "confidence": [2020.8160455393004, 2020.853825136612]}}, "branch_attrs": {"mutations": {"nuc": ["C2445T", "C8802T", "C15240T", "C17004T", "G17259T", "G19419T", "A19667G", "C20283T", "C20404T", "T29173G", "G29751T"]}}, "children": [{"name": "NZL/20CV0563/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8811475409836, "confidence": [2020.8811475409836, 2020.8811475409836]}, "tsne_y": {"value": -7.538377450135599}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Wellington"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.30661379716774}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.794179316583365}, "tsne_x": {"value": -7.89661769227288}, "mds3": {"value": 6.305923172761725}, "umap_x": {"value": 8.058594}, "pca2": {"value": 11.775467645740752}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.6361334708701936}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.876921}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/20CV0527/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.853825136612, "confidence": [2020.853825136612, 2020.853825136612]}, "tsne_y": {"value": -7.53775561655896}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Wellington"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.24437138388274}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.84170873194867}, "tsne_x": {"value": -7.898549265176875}, "mds3": {"value": 13.384628106938528}, "umap_x": {"value": 8.108529}, "pca2": {"value": 12.11669964354381}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -15.42068576964522}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.782593}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000243", "node_attrs": {"div": 9, "num_date": {"value": 2020.5141186399076, "confidence": [2020.1986297827364, 2020.6691312149048]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0639/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.922131147541, "confidence": [2020.922131147541, 2020.922131147541]}, "tsne_y": {"value": -12.368434157159404}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.79319254708653}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.011174807026963}, "tsne_x": {"value": -6.401440142912862}, "mds3": {"value": 3.937019962131629}, "umap_x": {"value": 8.015153}, "pca2": {"value": -3.30555094265428}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.109127134145702}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.912425}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G8936A", "C10641T", "C15324T", "C15579T", "G17122A", "A17615G", "C17766T", "C19018T", "G25340T", "A28521G", "G28703A"], "S": ["D1260Y"]}, "labels": {"aa": "S: D1260Y"}}}, {"name": "NODE_0000244", "node_attrs": {"div": 9, "num_date": {"value": 2020.560750309507, "confidence": [2020.195922949734, 2020.6777676104796]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-36/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0150684931507, "confidence": [2021.0150684931507, 2021.0150684931507]}, "tsne_y": {"value": -13.139865422087375}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.70895925465457}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.893103293920148}, "tsne_x": {"value": -6.67998543287418}, "mds3": {"value": 3.789982491257824}, "umap_x": {"value": 8.529205}, "pca2": {"value": -0.2698214596783611}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.222709897852651}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.921154}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2061T", "T3475C", "T4591C", "G9329A", "C11224T", "C11941T", "C12043T", "C12242T", "C12439T", "C15952T", "G21974C", "-22190A", "-22191T", "-22192T", "G25456C", "G25630A", "G25654T", "G28907A", "G29474T"], "S": ["D138H", "-210I"]}, "labels": {"aa": "S: D138H, -210I"}}}, {"name": "NZL/20CV0628/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.9193989071039, "confidence": [2020.9193989071039, 2020.9193989071039]}, "tsne_y": {"value": -12.608764618972604}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.545949493977124}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.884926685117548}, "tsne_x": {"value": -5.280595246948454}, "mds3": {"value": 7.456953726337757}, "umap_x": {"value": 7.4099665}, "pca2": {"value": -0.2592696406152378}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.494806896580514}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.291529}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4320T", "A11211G", "G18826T", "G19648T", "A26676T", "C28310T"]}}}]}]}]}, {"name": "NODE_0000680", "node_attrs": {"div": 10, "num_date": {"value": 2020.5883658161524, "confidence": [2020.3661804695316, 2020.6806502751542]}}, "branch_attrs": {"mutations": {"nuc": ["G25494T"]}}, "children": [{"name": "BGD/NGRI-R2-24/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.6926229508197, "confidence": [2020.6926229508197, 2020.6926229508197]}, "tsne_y": {"value": -13.24478865887849}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.835644424121616}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.369071764519245}, "tsne_x": {"value": -5.479170395557686}, "mds3": {"value": 8.244818879399743}, "umap_x": {"value": 7.391769}, "pca2": {"value": -9.73045076928232}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.469330121138153}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.962529}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C10138T", "A13192G", "C26642T", "T29726-", "T29727-"]}}}, {"name": "NODE_0000681", "node_attrs": {"div": 12, "num_date": {"value": 2020.7796945170971, "confidence": [2020.6012062324942, 2020.8694739415153]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "G18756T"]}}, "children": [{"name": "MYS/NCOV27755/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.9084699453551, "confidence": [2020.9084699453551, 2020.9084699453551]}, "tsne_y": {"value": -13.912390113087598}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Malaysia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -13.103371118360116}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 34.22545072946339}, "tsne_x": {"value": -5.231148383230983}, "mds3": {"value": 4.901626549796347}, "umap_x": {"value": 7.395169}, "pca2": {"value": -1.8402123161640795}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.045973907811541}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.735396}, "country": {"value": "Malaysia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C9559T", "A28615G"]}}}, {"name": "NODE_0000682", "node_attrs": {"div": 15, "num_date": {"value": 2020.940963749088, "confidence": [2020.8465131231417, 2020.965553932212]}}, "branch_attrs": {"mutations": {"nuc": ["C6317T", "C17999T", "C22938T"], "S": ["S459F"]}, "labels": {"aa": "S: S459F"}}, "children": [{"name": "THA/CONI-0339/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.9658469945355, "confidence": [2020.9658469945355, 2020.9658469945355]}, "tsne_y": {"value": -14.14389727700896}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Samut Sakhon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.154744730912206}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 7.095732964831887}, "tsne_x": {"value": -5.105769508483546}, "mds3": {"value": 3.967625673634544}, "umap_x": {"value": 7.3607106}, "pca2": {"value": -4.92603451991071}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.559957792714081}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.85395}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "THA/CONI-0369/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.9658469945355, "confidence": [2020.9658469945355, 2020.9658469945355]}, "tsne_y": {"value": -14.1978492699614}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Samut Sakhon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.22789087159332}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 7.133394202853605}, "tsne_x": {"value": -5.079704981930453}, "mds3": {"value": 4.812671801074177}, "umap_x": {"value": 7.3863263}, "pca2": {"value": -4.926462818725297}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.303658986139713}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.633197}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G15957T"]}}}, {"name": "NODE_0000685", "node_attrs": {"div": 16, "num_date": {"value": 2020.9767759562842, "confidence": [2020.9511193907422, 2020.9767759562842]}}, "branch_attrs": {"mutations": {"nuc": ["C29509T"]}}, "children": [{"name": "THA/CONI-0386/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.9767759562842, "confidence": [2020.9767759562842, 2020.9767759562842]}, "tsne_y": {"value": -14.202774912820283}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Samut Sakhon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.778359356447526}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 4.533407295462814}, "tsne_x": {"value": -5.079363609834744}, "mds3": {"value": 2.959792047810775}, "umap_x": {"value": 7.388867}, "pca2": {"value": 14.6585877914596}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.382770837242607}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.511761}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "THA/CONI-0388/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.9795081967213, "confidence": [2020.9795081967213, 2020.9795081967213]}, "tsne_y": {"value": -14.201527436435844}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Samut Sakhon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.911042983881847}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.877895482526769}, "tsne_x": {"value": -5.079132636274062}, "mds3": {"value": 5.5590015267803}, "umap_x": {"value": 7.3942437}, "pca2": {"value": -4.916185282886305}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.662936918399685}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.414654}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000352", "node_attrs": {"div": 15, "num_date": {"value": 2020.9629306585446, "confidence": [2020.84052541422, 2021.0287671232877]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/CONI-0469/2021", "node_attrs": {"div": 15, "num_date": {"value": 2021.0287671232877, "confidence": [2021.0287671232877, 2021.0287671232877]}, "tsne_y": {"value": -14.142853071975184}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Samut Sakhon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.92591123690414}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.877475907103145}, "tsne_x": {"value": -5.104552707284169}, "mds3": {"value": 3.653757560871424}, "umap_x": {"value": 7.3753943}, "pca2": {"value": -4.917740233664665}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.5502877129731845}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.891269}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000683", "node_attrs": {"div": 16, "num_date": {"value": 2021.0086633542508, "confidence": [2020.907322664945, 2021.0680254993647]}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}, "children": [{"name": "THA/CONI-0535/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_y": {"value": -14.330013984430298}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Pathum Thani"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.15624360538421}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.784856937709628}, "tsne_x": {"value": -5.022235212286105}, "mds3": {"value": 4.376965756506888}, "umap_x": {"value": 8.082599}, "pca2": {"value": -6.313320371751539}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.0774191597474063}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.752105}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3210G", "C6318T", "T7546C", "C11919T", "C14928T"]}}}, {"name": "THA/CONI-0503/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.1082191780822, "confidence": [2021.1082191780822, 2021.1082191780822]}, "tsne_y": {"value": -14.266478511228886}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.36.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Pathum Thani"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.380468786487032}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.444736642442861}, "tsne_x": {"value": -5.047503291869016}, "mds3": {"value": 3.779895901712788}, "umap_x": {"value": 7.457681}, "pca2": {"value": -8.085102703033622}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.267100126809407}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.046575}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C17745T", "C29171T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000706", "node_attrs": {"div": 6, "num_date": {"value": 2019.946319689206, "confidence": [2019.9035009390225, 2019.9548400404847]}}, "branch_attrs": {"mutations": {"nuc": ["C1059T"]}}, "children": [{"name": "NODE_0000785", "node_attrs": {"div": 7, "num_date": {"value": 2019.954195163372, "confidence": [2019.914898808371, 2019.9561987318714]}}, "branch_attrs": {"mutations": {"nuc": ["C27964T"]}}, "children": [{"name": "NODE_0000255", "node_attrs": {"div": 8, "num_date": {"value": 2020.1867026324355, "confidence": [2020.1162654922896, 2020.2472863516646]}}, "branch_attrs": {"mutations": {"nuc": ["C29870A"]}}, "children": [{"name": "NODE_0000792", "node_attrs": {"div": 9, "num_date": {"value": 2020.2353114487357, "confidence": [2020.1789173515263, 2020.314882630693]}}, "branch_attrs": {"mutations": {"nuc": ["T833C"]}}, "children": [{"name": "USA/NC-QDX-180/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_y": {"value": -9.023527491819928}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "North Carolina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.579028365189116}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.9219054829191897}, "tsne_x": {"value": -5.71005337260024}, "mds3": {"value": 3.486342572619896}, "umap_x": {"value": 7.6312857}, "pca2": {"value": -0.2691610908279639}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.604906136623196}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.694292}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C11752T", "C11962T"]}}}, {"name": "NODE_0000257", "node_attrs": {"div": 9, "num_date": {"value": 2020.2803361020308, "confidence": [2020.1753649579227, 2020.3286610230714]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-UPHL-2012267269/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4631147540983, "confidence": [2020.4631147540983, 2020.4631147540983]}, "tsne_y": {"value": -7.731886516208761}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -0.8146726852010606}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 46.368808446869416}, "tsne_x": {"value": -6.636613583369239}, "mds3": {"value": 4.540046817006366}, "umap_x": {"value": 7.596373}, "pca2": {"value": -13.752024820323586}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.366264151036109}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.089064}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C8389T", "G9705T", "T10665C", "G11521A", "G28899A", "G29260T"]}}}, {"name": "NODE_0000794", "node_attrs": {"div": 21, "num_date": {"value": 2020.613359008199, "confidence": [2020.5601426611677, 2020.6421879109337]}}, "branch_attrs": {"mutations": {"nuc": ["A2473G", "C5512T", "C6541T", "C9515T", "C11379T", "C17125T", "A19175C", "T19839C", "C21221T", "A22320G", "G25523T", "T29685G"], "S": ["D253G"]}, "labels": {"aa": "S: D253G"}}, "children": [{"name": "USA/AK-PHL21541/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.73087431694, "confidence": [2020.73087431694, 2020.73087431694]}, "tsne_y": {"value": -6.754432584039624}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.426"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Alaska"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.229834342570022}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.513536894703469}, "tsne_x": {"value": -6.59421376535719}, "mds3": {"value": 4.0905886278332}, "umap_x": {"value": 8.057059}, "pca2": {"value": 14.004236889318314}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -23.18152947724661}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.505243}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T10830C", "C27644T"]}}}, {"name": "NODE_0000795", "node_attrs": {"div": 22, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6169634190135, 2020.6516393442623]}}, "branch_attrs": {"mutations": {"nuc": ["C27434T"]}}, "children": [{"name": "USA/AK-PHL21216/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_y": {"value": -6.755032731600151}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.426"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Alaska"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.186322436554725}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.266532838072601}, "tsne_x": {"value": -6.592598378900477}, "mds3": {"value": 3.356513069819136}, "umap_x": {"value": 8.183122}, "pca2": {"value": -9.456326286592503}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.595896649661553}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.477153}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/AK-PHL21642/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_y": {"value": -6.747203236692929}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.426"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Alaska"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -28.925172525288858}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.318064437872001}, "tsne_x": {"value": -6.594891196130659}, "mds3": {"value": 4.692986129449952}, "umap_x": {"value": 8.221207}, "pca2": {"value": -9.521393642675214}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.6481350954206018}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.361174}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3828T", "T27833A"]}}}]}]}]}]}, {"name": "NODE_0000260", "node_attrs": {"div": 8, "num_date": {"value": 2020.235926904309, "confidence": [2020.137432682389, 2020.2526733985078]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000790", "node_attrs": {"div": 10, "num_date": {"value": 2020.3623290867931, "confidence": [2020.2661130555703, 2020.5085118162322]}}, "branch_attrs": {"mutations": {"nuc": ["C3042T", "G11083T"]}}, "children": [{"name": "NGA/CV302/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6734972677596, "confidence": [2020.6734972677596, 2020.6734972677596]}, "tsne_y": {"value": -8.432905397132345}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.603049951036445}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.121608680984763}, "tsne_x": {"value": -5.846030778333414}, "mds3": {"value": 4.914698451522476}, "umap_x": {"value": 7.432218}, "pca2": {"value": -6.900670562349585}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -12.42575302580796}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.126354}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "A1876G", "G1942T", "T15420C", "T16456C", "G21724T", "T23308C"], "S": ["L54F"]}, "labels": {"aa": "S: L54F"}}}, {"name": "USA/NY-PV19643/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.7636612021859, "confidence": [2020.7636612021859, 2020.7636612021859]}, "tsne_y": {"value": -8.548023201528952}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.336"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.84420621788389}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.231044268730415}, "tsne_x": {"value": -6.132531598712142}, "mds3": {"value": 1.4726103520906928}, "umap_x": {"value": 7.57932}, "pca2": {"value": 14.336857906053336}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.454126531135391}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.435186}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6404T", "C9967T", "C11109T", "C12473T", "A18931G", "G21786T", "T21922C", "A23416T", "T27939C", "G28899T"], "S": ["G75V"]}, "labels": {"aa": "S: G75V"}}}]}, {"name": "NODE_0000262", "node_attrs": {"div": 8, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2121621465071, 2020.2554644808743]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/LA-BIE-049/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2554644808743, "confidence": [2020.2554644808743, 2020.2554644808743]}, "tsne_y": {"value": -9.655032237676968}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.065498453465563}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.012644574455648}, "tsne_x": {"value": -5.75256447651945}, "mds3": {"value": 2.963111438249358}, "umap_x": {"value": 7.661244}, "pca2": {"value": 0.492231915880589}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.3639156714535114}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.888569}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000263", "node_attrs": {"div": 8, "num_date": {"value": 2020.2563797924045, "confidence": [2020.1510059592217, 2020.4016067523683]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-0969/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.5204918032787, "confidence": [2020.5204918032787, 2020.5204918032787]}, "tsne_y": {"value": -8.31775728738987}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.176346269069976}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.709941335665415}, "tsne_x": {"value": -6.181786285277823}, "mds3": {"value": 8.301670097844443}, "umap_x": {"value": 7.5697384}, "pca2": {"value": -10.040800233578125}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -13.663344798598567}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.543926}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G7393T", "C10188T", "C17745T", "C18946T", "T24982C", "A26231C", "T27531C", "T27901C", "G28077C", "C29149T"]}}}, {"name": "NODE_0000264", "node_attrs": {"div": 8, "num_date": {"value": 2020.3261600483672, "confidence": [2020.1369120362156, 2020.4167198500127]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AK-PHL21698/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_y": {"value": -8.717700913709928}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Alaska"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.00470217207826}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.507390893944158}, "tsne_x": {"value": -6.370087627444535}, "mds3": {"value": 5.83006491807962}, "umap_x": {"value": 8.276029}, "pca2": {"value": -15.58333545500459}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -20.42286872441301}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.3257265}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2003T", "A6022G", "C8240T", "A10286G", "C11835A", "T12066C", "C16349T", "T18519C", "C21110T", "G21850T", "A23691G", "C26681T", "G27852T", "C28846T", "C29580T"], "S": ["E96D", "N710S"]}, "labels": {"aa": "S: E96D, N710S"}}}, {"name": "USA/DC-CDC-LC0005033/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0123287671233, "confidence": [2021.0123287671233, 2021.0123287671233]}, "tsne_y": {"value": -10.621080611065404}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Washington DC"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.710195999201}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.17296836702128}, "tsne_x": {"value": -5.101912370066593}, "mds3": {"value": 10.096748687856484}, "umap_x": {"value": 8.08479}, "pca2": {"value": 13.72554785377137}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -19.551453655528817}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.571715}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G174T", "A691G", "A3314G", "C8752T", "C9940T", "C11020T", "C12084T", "C12400T", "A15626C", "C17339T", "C24337T", "C26885T", "C27615T", "C28311G"]}}}]}]}]}]}]}, {"name": "NODE_0000796", "node_attrs": {"div": 8, "num_date": {"value": 2019.9584726152511, "confidence": [2019.925153128126, 2019.9607323345144]}}, "branch_attrs": {"mutations": {"nuc": ["C10319T"]}}, "children": [{"name": "NODE_0000266", "node_attrs": {"div": 8, "num_date": {"value": 2020.2035519125684, "confidence": [2020.1598287924041, 2020.2035519125684]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-QDX-1340/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2035519125684, "confidence": [2020.2035519125684, 2020.2035519125684]}, "tsne_y": {"value": -9.266380313496782}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.327242885890959}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.920708478429136}, "tsne_x": {"value": -5.668341758138614}, "mds3": {"value": 2.9593225682619644}, "umap_x": {"value": 7.6884027}, "pca2": {"value": -0.2694644237822209}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.106775354676801}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.770773}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000267", "node_attrs": {"div": 8, "num_date": {"value": 2020.3287721184413, "confidence": [2020.2359759365363, 2020.4573476078706]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-HHD-4391121/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4631147540983, "confidence": [2020.4631147540983, 2020.4631147540983]}, "tsne_y": {"value": -8.601393644202778}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Texas"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.261705868792158}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.920678435125703}, "tsne_x": {"value": -5.54905295167337}, "mds3": {"value": 3.737618741518268}, "umap_x": {"value": 7.659954}, "pca2": {"value": -16.295297972721077}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.87676849965493}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.281809}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C1150T", "C17977T", "G25641T"]}}}, {"name": "NODE_0000269", "node_attrs": {"div": 8, "num_date": {"value": 2020.365497418268, "confidence": [2020.287101904141, 2020.5279952175563]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MT-UMGC-04689/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.782786885246, "confidence": [2020.782786885246, 2020.782786885246]}, "tsne_y": {"value": -8.296073610067484}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Montana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.020081011033346}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.962264912746078}, "tsne_x": {"value": -5.605520886699653}, "mds3": {"value": 2.6173878617676003}, "umap_x": {"value": 7.5927505}, "pca2": {"value": -12.092184293994956}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.679312893093345}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.784887}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5512T", "C6026T", "C8683T", "T27929A", "C29870A"]}}}, {"name": "USA/UT-UPHL-2012521294/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7254098360656, "confidence": [2020.7254098360656, 2020.7254098360656]}, "tsne_y": {"value": -7.961178676950025}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -15.35551670057022}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 31.232254215643405}, "tsne_x": {"value": -5.800560388637645}, "mds3": {"value": 5.571780281239295}, "umap_x": {"value": 7.5549603}, "pca2": {"value": -2.0043565977543616}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.31442472409503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.5333605}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3411T", "T6394C", "C12469T", "C20270A", "G24368T", "C26208T", "C28887T", "C29144T", "A29487G"], "S": ["D936Y"]}, "labels": {"aa": "S: D936Y"}}}]}]}]}, {"name": "NODE_0000800", "node_attrs": {"div": 9, "num_date": {"value": 2019.9639525199016, "confidence": [2019.961399419538, 2019.9639525199016]}}, "branch_attrs": {"mutations": {"nuc": ["C28472T"]}}, "children": [{"name": "USA/WI-UW-2310/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_y": {"value": -9.731689622937564}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Wisconsin"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.262427255894888}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 8.00154116087488}, "tsne_x": {"value": -6.250767724687671}, "mds3": {"value": 2.69210716162058}, "umap_x": {"value": 7.6761036}, "pca2": {"value": -3.334762126448481}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.6121285476893985}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.16964}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000801", "node_attrs": {"div": 13, "num_date": {"value": 2019.983186384187, "confidence": [2019.973826307669, 2019.983186384187]}}, "branch_attrs": {"mutations": {"nuc": ["A18424G", "C21304T", "G25907T", "C28869T"]}}, "children": [{"name": "NODE_0000802", "node_attrs": {"div": 15, "num_date": {"value": 2019.9908246779912, "confidence": [2019.9787935802142, 2019.9979552561256]}}, "branch_attrs": {"mutations": {"nuc": ["G8083A", "C14805T"]}}, "children": [{"name": "NODE_0000812", "node_attrs": {"div": 16, "num_date": {"value": 2019.9971084866834, "confidence": [2019.9854081936764, 2020.0093079900912]}}, "branch_attrs": {"mutations": {"nuc": ["G29402T"]}}, "children": [{"name": "USA/MT-UMGC-02796/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.00956284153, "confidence": [2020.00956284153, 2020.00956284153]}, "tsne_y": {"value": -5.206764680078209}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Montana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.979979379804035}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.009056691385401}, "tsne_x": {"value": -4.4821719314274695}, "mds3": {"value": 1.575714203564132}, "umap_x": {"value": 7.536486}, "pca2": {"value": -12.156759316321766}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -17.677325863285454}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.265853}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G669A", "T1075C", "C3177T", "C29870A"]}}}, {"name": "NODE_0000275", "node_attrs": {"div": 16, "num_date": {"value": 2020.7085317445255, "confidence": [2020.340515978724, 2020.9346645142202]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0672/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.9603825136612, "confidence": [2020.9603825136612, 2020.9603825136612]}, "tsne_y": {"value": -5.225376837634346}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.92135365611894}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 2.000902300907947}, "tsne_x": {"value": -4.470213593341748}, "mds3": {"value": 0.4355652870957441}, "umap_x": {"value": 7.407017}, "pca2": {"value": 0.6760185195005562}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -15.234199537259244}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.95183}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1444T", "G8653T", "A25397C"]}}}, {"name": "USA/WV090896/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_y": {"value": -5.114283688395918}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "West Virginia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.282520547570222}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.441208243121567}, "tsne_x": {"value": -4.5108839374180585}, "mds3": {"value": 1.5897393922937972}, "umap_x": {"value": 7.86156}, "pca2": {"value": -9.539644343484484}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -20.002031080533698}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.666535}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G7010A", "C9665T", "G23593T", "G26775T", "G26951T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}]}]}, {"name": "NODE_0000276", "node_attrs": {"div": 15, "num_date": {"value": 2020.4924632957554, "confidence": [2020.4034926144443, 2020.52337990043]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000807", "node_attrs": {"div": 16, "num_date": {"value": 2020.6319882153562, "confidence": [2020.4900882594827, 2020.7362943305782]}}, "branch_attrs": {"mutations": {"nuc": ["C18131T"]}}, "children": [{"name": "USA/AL-CDC-LC0004974/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0123287671233, "confidence": [2021.0123287671233, 2021.0123287671233]}, "tsne_y": {"value": -4.977342910502331}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Alabama"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -20.16565872976721}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.154174344481783}, "tsne_x": {"value": -4.579244362277184}, "mds3": {"value": 0.7437568330355325}, "umap_x": {"value": 8.101964}, "pca2": {"value": 13.718556431161318}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -18.66200218331992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.363976}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1670T", "C6633T", "T7171G", "A8763G", "G28357T", "G29402T", "G29715T"]}}}, {"name": "USA/JEHT/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8428961748634, "confidence": [2020.8428961748634, 2020.8428961748634]}, "tsne_y": {"value": -5.129273013631012}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Alabama"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.708995946533046}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.905551451397853}, "tsne_x": {"value": -4.5315197321931935}, "mds3": {"value": 5.420654250082976}, "umap_x": {"value": 7.879132}, "pca2": {"value": -0.2619476960010408}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -19.73128927495438}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.626108}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T7348A", "C10789T", "G23593T", "G24608A", "T29726-"], "S": ["Q677H", "A1016T"]}, "labels": {"aa": "S: Q677H, A1016T"}}}]}, {"name": "NODE_0000278", "node_attrs": {"div": 15, "num_date": {"value": 2020.525956284153, "confidence": [2020.4760039570674, 2020.525956284153]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-MDHHS-SC21808/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.525956284153, "confidence": [2020.525956284153, 2020.525956284153]}, "tsne_y": {"value": -5.389185377383201}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.285445547897926}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 19.56825666142901}, "tsne_x": {"value": -4.394888715306499}, "mds3": {"value": 1.6155553870276926}, "umap_x": {"value": 7.507086}, "pca2": {"value": -5.121554749648898}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -12.352614146595965}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.073467}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000279", "node_attrs": {"div": 15, "num_date": {"value": 2020.536249530817, "confidence": [2020.485601998876, 2020.6239709230067]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-1153/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.629781420765, "confidence": [2020.629781420765, 2020.629781420765]}, "tsne_y": {"value": -5.3216168203080345}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.112049059799144}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 24.018874956472462}, "tsne_x": {"value": -4.426547347561559}, "mds3": {"value": 1.1083208176240853}, "umap_x": {"value": 7.4564414}, "pca2": {"value": -4.841701161821691}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -14.468123370537905}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.416588}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "A7479G"]}}}, {"name": "NODE_0000280", "node_attrs": {"div": 15, "num_date": {"value": 2020.5888913907686, "confidence": [2020.445685617649, 2020.7218111471227]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/94087/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8374316939892, "confidence": [2020.8374316939892, 2020.8374316939892]}, "tsne_y": {"value": -5.222091994860467}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.31175386562174}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.551711903930234}, "tsne_x": {"value": -4.561296699911936}, "mds3": {"value": 6.641722396773544}, "umap_x": {"value": 7.552373}, "pca2": {"value": -9.447238133152362}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -16.371844851108914}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.197239}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3994A", "C10189T", "T21304C", "C22079A", "G26951C"], "S": ["Q173K"]}, "labels": {"aa": "S: Q173K"}}}, {"name": "NODE_0000281", "node_attrs": {"div": 15, "num_date": {"value": 2020.6331547225943, "confidence": [2020.445405252778, 2020.7290115125572]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MO-CDC-2-3714191/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.8510928961748, "confidence": [2020.8510928961748, 2020.8510928961748]}, "tsne_y": {"value": -4.977087680268277}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Missouri"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.39702041899413}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.683986063913662}, "tsne_x": {"value": -4.613941195178012}, "mds3": {"value": 4.300230418494632}, "umap_x": {"value": 8.109628}, "pca2": {"value": -6.469040062947338}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -20.29665826307368}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.3362665}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3784T", "A5269G", "G5273C", "C5274A", "C6628A", "G13201T", "C19269T", "G20176T"]}}}, {"name": "NODE_0000282", "node_attrs": {"div": 15, "num_date": {"value": 2020.689977189629, "confidence": [2020.4199987644859, 2020.9092159397178]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0635/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.922131147541, "confidence": [2020.922131147541, 2020.922131147541]}, "tsne_y": {"value": -5.311727232916365}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.64794672610113}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.712486831062645}, "tsne_x": {"value": -4.474165815410169}, "mds3": {"value": 5.738202453328142}, "umap_x": {"value": 7.5285525}, "pca2": {"value": -0.2953086619086462}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -13.860857823602275}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.339251}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1409T", "C14016T", "G25621T"]}}}, {"name": "NODE_0000285", "node_attrs": {"div": 15, "num_date": {"value": 2020.714199160306, "confidence": [2020.4231307380217, 2020.9168849884707]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-CDC-LC0005756/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.0397260273974, "confidence": [2021.0397260273974, 2021.0397260273974]}, "tsne_y": {"value": -5.297108769622138}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.297061878839944}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.036268925315353}, "tsne_x": {"value": -5.077995234882917}, "mds3": {"value": 6.809966535498394}, "umap_x": {"value": 8.123787}, "pca2": {"value": 14.890530181737654}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -25.39226399934389}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.325803}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G521T", "C3411T", "C3686T", "A6796G", "C8626A", "C16547T", "G21088T", "C21302T", "T21304A", "G21305A", "G25687T"]}}}, {"name": "NODE_0000286", "node_attrs": {"div": 15, "num_date": {"value": 2020.7602566218725, "confidence": [2020.426649896343, 2020.9283321489042]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/GA-CDC-STM-000019388/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_y": {"value": -5.04898757272354}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Georgia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.556365242066796}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.737265752823609}, "tsne_x": {"value": -4.5291527842618535}, "mds3": {"value": 5.531472053211605}, "umap_x": {"value": 7.9860225}, "pca2": {"value": -18.089389991315123}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -21.996111430029053}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.5283165}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C823T", "C5812T", "C12049T", "C17410T", "T27792-", "T27793-", "C27999T", "C29754T"]}}}, {"name": "USA/AL-CDC-2-4611581/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0534246575342, "confidence": [2021.0534246575342, 2021.0534246575342]}, "tsne_y": {"value": -5.04709912706096}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Alabama"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.081447468045912}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.2519767005750015}, "tsne_x": {"value": -4.542352952054968}, "mds3": {"value": 5.704396276359654}, "umap_x": {"value": 8.012862}, "pca2": {"value": -6.595193342238295}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -21.676130297469253}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.442873}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2232A", "A12180T", "T12394C", "C12488T", "C19955T", "C25416T", "G27987T"]}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000287", "node_attrs": {"div": 13, "num_date": {"value": 2020.366172974005, "confidence": [2020.2750193660704, 2020.5031005939572]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000288", "node_attrs": {"div": 13, "num_date": {"value": 2020.4630556292993, "confidence": [2020.3491981420527, 2020.5056762918753]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TN-SPHL-01438/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5232240437158, "confidence": [2020.5232240437158, 2020.5232240437158]}, "tsne_y": {"value": -5.577291443970117}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Tennessee"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.082045420176471}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 3.766872581525941}, "tsne_x": {"value": -4.280851664613505}, "mds3": {"value": 1.1894393801003165}, "umap_x": {"value": 7.581465}, "pca2": {"value": -0.6945132071990388}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -10.065213031223932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.369783}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G9928T", "C10440T"]}}}, {"name": "NODE_0000290", "node_attrs": {"div": 13, "num_date": {"value": 2020.5534637826793, "confidence": [2020.410893159802, 2020.758466887992]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000820", "node_attrs": {"div": 14, "num_date": {"value": 2020.6895780147784, "confidence": [2020.4809178312833, 2020.9253831171488]}}, "branch_attrs": {"mutations": {"nuc": ["C19881T"]}}, "children": [{"name": "NZL/21MV0077/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_y": {"value": -6.158967984652108}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.74705134908044}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.943233825196785}, "tsne_x": {"value": -4.481072925476665}, "mds3": {"value": 8.226870472741153}, "umap_x": {"value": 8.160991}, "pca2": {"value": 11.861405440874048}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -22.71389705282418}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.287518}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G533A", "C7688T", "C11020T", "C16626T", "G19999T", "G22332A", "C25658T", "C27453T", "C28093T"], "S": ["G257D"]}, "labels": {"aa": "S: G257D"}}}, {"name": "USA/FL-CDC-STM-000011845/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.1054794520549, "confidence": [2021.1054794520549, 2021.1054794520549]}, "tsne_y": {"value": -5.89880787833964}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -13.131856159354124}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 41.11179617981456}, "tsne_x": {"value": -4.591614611579371}, "mds3": {"value": 5.414116236159016}, "umap_x": {"value": 7.6167517}, "pca2": {"value": -10.539948103251248}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -17.012147329300227}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.095601}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1471T", "G11071C", "T11953C", "T12203C", "G13201T", "G29810T"]}}}]}, {"name": "NODE_0000292", "node_attrs": {"div": 13, "num_date": {"value": 2020.5878680052024, "confidence": [2020.4209152690084, 2020.759008456749]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-MGH-03263/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.799180327869, "confidence": [2020.799180327869, 2020.799180327869]}, "tsne_y": {"value": -5.982924969606723}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.745453663682486}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.895387025307151}, "tsne_x": {"value": -4.341629213102406}, "mds3": {"value": 5.034833397171452}, "umap_x": {"value": 7.9898086}, "pca2": {"value": -18.57504556520038}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -18.931066986395063}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.437452}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G9526T", "C11884T", "G11939T", "T11940G", "C12084T", "G15598T", "C17678T", "T28118C"]}}}, {"name": "NODE_0000293", "node_attrs": {"div": 13, "num_date": {"value": 2020.6482578640398, "confidence": [2020.4977596489782, 2020.8058510672718]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NV-NSPHL-306409/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_y": {"value": -5.710876947819151}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.428669961973112}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.875451501833275}, "tsne_x": {"value": -4.312667626327371}, "mds3": {"value": 6.461916640264861}, "umap_x": {"value": 7.7284904}, "pca2": {"value": -0.2677575984360056}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -17.119995420786374}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.880183}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C16192T", "C19170T", "C20451T", "G25135T", "T28382G", "G28922T"], "S": ["K1191N"]}, "labels": {"aa": "S: K1191N"}}}, {"name": "NODE_0000294", "node_attrs": {"div": 13, "num_date": {"value": 2020.6914496348647, "confidence": [2020.5026543553338, 2020.8076766800964]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000295", "node_attrs": {"div": 13, "num_date": {"value": 2020.708668750382, "confidence": [2020.5116885805649, 2020.8168660365534]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-14877/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.886612021858, "confidence": [2020.886612021858, 2020.886612021858]}, "tsne_y": {"value": -5.712067673586045}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.53139264980691}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.879724264073837}, "tsne_x": {"value": -4.347842665047934}, "mds3": {"value": 5.798589034531658}, "umap_x": {"value": 7.767581}, "pca2": {"value": -9.901170813239691}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -16.23283998734807}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.899708}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G4642A", "A10842G", "C20970T", "C21595T", "C29421T", "G29830T"]}}}, {"name": "USA/TG923231/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8346994535518, "confidence": [2020.8346994535518, 2020.8346994535518]}, "tsne_y": {"value": -5.599406877334623}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -6.4820994346017375}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 10.32440148957955}, "tsne_x": {"value": -4.284050506921054}, "mds3": {"value": 1.8783992576224389}, "umap_x": {"value": 7.580656}, "pca2": {"value": 11.479716703316756}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -11.38376461828123}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.280752}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6461A", "G11743A"]}}}]}, {"name": "NODE_0000296", "node_attrs": {"div": 13, "num_date": {"value": 2020.7087008403566, "confidence": [2020.5080529530053, 2020.8432801631695]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/SD-SDAIHG-0889/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_y": {"value": -5.992590257053353}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "South Dakota"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.772908165902845}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.337684310364434}, "tsne_x": {"value": -4.761169474246247}, "mds3": {"value": 2.9747794795030083}, "umap_x": {"value": 8.132708}, "pca2": {"value": 1.201474841928403}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -13.346664885356311}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.333204}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G105T", "G9220A", "C11572T", "C11747T", "C12484T", "A16011G", "C21614T", "G23611T", "C25096T", "G25784T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}, {"name": "USA/AZ-ASU18323/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.0561643835617, "confidence": [2021.0561643835617, 2021.0561643835617]}, "tsne_y": {"value": -5.623114061922228}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.85284555731441}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.20910782479824}, "tsne_x": {"value": -4.3052993187048685}, "mds3": {"value": 4.932266682920686}, "umap_x": {"value": 7.504531}, "pca2": {"value": 0.693130810681941}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -16.04888776885314}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.326884}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5497T", "C6317T", "T14045C", "C16215T", "C18555T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000823", "node_attrs": {"div": 15, "num_date": {"value": 2020.4793317917336, "confidence": [2020.4185485386106, 2020.5177595628415]}}, "branch_attrs": {"mutations": {"nuc": ["T1927C", "A22255T"]}}, "children": [{"name": "USA/42170/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5177595628415, "confidence": [2020.5177595628415, 2020.5177595628415]}, "tsne_y": {"value": -5.582274919662548}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Idaho"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.351543678617324}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.9384117244996535}, "tsne_x": {"value": -4.038543604880409}, "mds3": {"value": 4.256670396720641}, "umap_x": {"value": 7.378811}, "pca2": {"value": -5.834449801151137}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -13.892080160187838}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.955345}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C19185T"]}}}, {"name": "NODE_0000298", "node_attrs": {"div": 15, "num_date": {"value": 2020.5059291528767, "confidence": [2020.421268475518, 2020.543745398638]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/hCov_19_USA_ID_IVREF_635968_2020/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.5696721311476, "confidence": [2020.5696721311476, 2020.5696721311476]}, "tsne_y": {"value": -5.588958159638163}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Idaho"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.02620388344748}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.582679064255297}, "tsne_x": {"value": -4.000637437452284}, "mds3": {"value": 5.833410294231936}, "umap_x": {"value": 7.5188513}, "pca2": {"value": -6.433516127816499}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -14.511092980809892}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.261222}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A6284G", "G20113T"]}}}, {"name": "NODE_0000299", "node_attrs": {"div": 15, "num_date": {"value": 2020.536291359733, "confidence": [2020.4088013756345, 2020.6336496353767]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000300", "node_attrs": {"div": 15, "num_date": {"value": 2020.557489309117, "confidence": [2020.4099176937548, 2020.6364008050732]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/17861/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.6926229508197, "confidence": [2020.6926229508197, 2020.6926229508197]}, "tsne_y": {"value": -5.67596523003609}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -11.87328833628756}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 18.802020487708383}, "tsne_x": {"value": -3.8521913319633327}, "mds3": {"value": 7.610620413852687}, "umap_x": {"value": 7.555564}, "pca2": {"value": -10.948060360966258}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -16.48391764687171}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.144193}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1980A", "G5950T", "C19813T", "T21304C", "C29274T"]}}}, {"name": "NODE_0000824", "node_attrs": {"div": 17, "num_date": {"value": 2020.637875866106, "confidence": [2020.5530357239659, 2020.6808965417824]}}, "branch_attrs": {"mutations": {"nuc": ["G25565A", "C29095T"]}}, "children": [{"name": "USA/UT-UPHL-2101964660/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.9603825136612, "confidence": [2020.9603825136612, 2020.9603825136612]}, "tsne_y": {"value": -5.616379130989663}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -9.17457061023202}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 32.974676288057154}, "tsne_x": {"value": -3.892703884547477}, "mds3": {"value": 12.36732076245422}, "umap_x": {"value": 7.5013604}, "pca2": {"value": -7.215426085199496}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -8.627197914023961}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.041568}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1758T", "G16741T"]}}}, {"name": "USA/MA-MGH-03147/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.6844262295083, "confidence": [2020.6844262295083, 2020.6844262295083]}, "tsne_y": {"value": -5.620395786245356}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.011635456342846}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.68671602056614}, "tsne_x": {"value": -3.89265042805803}, "mds3": {"value": 8.773504282449256}, "umap_x": {"value": 7.445998}, "pca2": {"value": -6.730268066633196}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -16.50016702414036}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.280243}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T27901C", "A28254C"]}}}]}]}, {"name": "NODE_0000302", "node_attrs": {"div": 15, "num_date": {"value": 2020.589682878587, "confidence": [2020.327029403646, 2020.762842862661]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000304", "node_attrs": {"div": 15, "num_date": {"value": 2020.672639787558, "confidence": [2020.3185922657385, 2020.8376800348076]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-22780/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.99043715847, "confidence": [2020.99043715847, 2020.99043715847]}, "tsne_y": {"value": -5.728183790071651}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.939205219698476}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.435029840744432}, "tsne_x": {"value": -3.5777514321201305}, "mds3": {"value": 6.915468808745787}, "umap_x": {"value": 8.181103}, "pca2": {"value": -3.5619103369152163}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -24.24839257217496}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.284661}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1884T", "T3412A", "G7790A", "C12374T", "C14724T", "A17841C", "G21624T", "G29179T", "C29200T"], "S": ["R21I"]}, "labels": {"aa": "S: R21I"}}}, {"name": "NODE_0000305", "node_attrs": {"div": 15, "num_date": {"value": 2020.713335508078, "confidence": [2020.3229976176488, 2020.8790498637838]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-CDC-QDX22163942/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.1301369863013, "confidence": [2021.1301369863013, 2021.1301369863013]}, "tsne_y": {"value": -5.627648384033108}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.40407240369105}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.882430589466592}, "tsne_x": {"value": -3.5145718384963094}, "mds3": {"value": 7.128472737568878}, "umap_x": {"value": 8.231785}, "pca2": {"value": -0.2150243452319784}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -25.30224875955546}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.175485}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G248T", "C14016T", "G17427T", "C18167T", "A21137G", "A25472G", "G25489T", "A28254-", "C29420T", "C29459T"]}}}, {"name": "USA/UT-UPHL-2101397071/2021", "node_attrs": {"div": 19, "num_date": {"value": 2021.0397260273974, "confidence": [2021.0397260273974, 2021.0397260273974]}, "tsne_y": {"value": -5.583140339882265}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -13.59615443030414}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 29.170098051937213}, "tsne_x": {"value": -3.931688484266037}, "mds3": {"value": 5.42373546921923}, "umap_x": {"value": 7.6445074}, "pca2": {"value": -6.932812265465264}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -16.907743365818156}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.009262}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G185T", "C2449T", "C15120T", "A27663T"]}}}]}]}, {"name": "NODE_0000831", "node_attrs": {"div": 19, "num_date": {"value": 2020.8007435276888, "confidence": [2020.6218958070358, 2020.8476580114434]}}, "branch_attrs": {"mutations": {"nuc": ["G15766T", "G18538T", "T25930C", "A29439T"]}}, "children": [{"name": "USA/ID-UI-IIDS-U0932/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.8620218579235, "confidence": [2020.8620218579235, 2020.8620218579235]}, "tsne_y": {"value": -5.550914088988732}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Idaho"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.029661081777904}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.555020189450683}, "tsne_x": {"value": -3.607573198516309}, "mds3": {"value": 5.893943741354796}, "umap_x": {"value": 7.889046}, "pca2": {"value": 0.8477593881411408}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -20.38232705312053}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.6441555}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C9286T", "C13724T"]}}}, {"name": "NODE_0000832", "node_attrs": {"div": 23, "num_date": {"value": 2021.017808219178, "confidence": [2020.9738481865493, 2021.017808219178]}}, "branch_attrs": {"mutations": {"nuc": ["G3227A", "C6196T", "G23120T", "G26951T"], "S": ["A520S"]}, "labels": {"aa": "S: A520S"}}, "children": [{"name": "NZL/21CV0048/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.017808219178, "confidence": [2021.017808219178, 2021.017808219178]}, "tsne_y": {"value": -5.528859267973699}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.544244456540508}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.863030418802764}, "tsne_x": {"value": -3.4672606260548102}, "mds3": {"value": 5.617564512875672}, "umap_x": {"value": 8.166433}, "pca2": {"value": -0.2434318369291502}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -21.602684716276592}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.32864}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0093/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0369863013698, "confidence": [2021.0369863013698, 2021.0369863013698]}, "tsne_y": {"value": -5.529721527212316}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "11"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.5819603121126}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.869561552631664}, "tsne_x": {"value": -3.466947227089377}, "mds3": {"value": 5.378286947195022}, "umap_x": {"value": 8.134982}, "pca2": {"value": -0.2459204390641807}, "Nextstrain_clade": {"value": "20G"}, "t-sne_label_for_Nextstrain_clade": {"value": "11"}, "mds2": {"value": -21.84217528745209}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.31242}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000313", "node_attrs": {"div": 6, "num_date": {"value": 2020.0455651601185, "confidence": [2019.958479146406, 2020.1398476704546]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000722", "node_attrs": {"div": 7, "num_date": {"value": 2020.0652547713469, "confidence": [2019.9829061822943, 2020.2485383330654]}}, "branch_attrs": {"mutations": {"nuc": ["C10582T"]}}, "children": [{"name": "GBR/EDB1304/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2718579234972, "confidence": [2020.2718579234972, 2020.2718579234972]}, "tsne_y": {"value": -9.861144007589765}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Scotland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.757325645725516}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.20925647590057}, "tsne_x": {"value": -5.503874835406361}, "mds3": {"value": 4.398127142292832}, "umap_x": {"value": 7.447411}, "pca2": {"value": 0.7982150327158}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.493001488840036}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.865452}, "country": {"value": "United Kingdom"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C1076T", "C26461T"]}}}, {"name": "FRA/IHUCOVID-035673_Nova1/2020", "node_attrs": {"div": 31, "num_date": {"value": 2020.6598360655737, "confidence": [2020.6598360655737, 2020.6598360655737]}, "tsne_y": {"value": -8.84705082566879}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.367"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.85418247588227}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.947941353361161}, "tsne_x": {"value": -7.386663643860811}, "mds3": {"value": 4.983411331023748}, "umap_x": {"value": 8.729219}, "pca2": {"value": 11.73291187847465}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -31.74417476229653}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.550537}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3099T", "G4960T", "C4965T", "C6070T", "C7303T", "C7564T", "T8743C", "C9246T", "C10279T", "C10301A", "C10525T", "G10688T", "C11758T", "G11851T", "C14230A", "G16377T", "G16647A", "C20320T", "G21800T", "G27632T", "C27804T", "C28830A", "G29402T", "G29779T"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}}]}, {"name": "NODE_0000315", "node_attrs": {"div": 6, "num_date": {"value": 2020.0595329394275, "confidence": [2019.9892939986426, 2020.1465089437513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000317", "node_attrs": {"div": 6, "num_date": {"value": 2020.1313013920853, "confidence": [2019.9802382700395, 2020.186159209986]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000708", "node_attrs": {"div": 7, "num_date": {"value": 2020.1754606469167, "confidence": [2020.1424755312871, 2020.1871584699454]}}, "branch_attrs": {"mutations": {"nuc": ["C10851T"]}}, "children": [{"name": "USA/NY-CDC-3082352-001/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1871584699454, "confidence": [2020.1871584699454, 2020.1871584699454]}, "tsne_y": {"value": -10.010777446517045}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.319"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New York"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.523288790911028}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.40472885559705}, "tsne_x": {"value": -5.660333033207315}, "mds3": {"value": 3.198633397772822}, "umap_x": {"value": 7.533506}, "pca2": {"value": -15.581906314152407}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.915585394505216}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.498167}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C"]}}}, {"name": "AUS/TAS220/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_y": {"value": -9.934131080692076}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.319"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tasmania"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.693639212974988}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.163406349806512}, "tsne_x": {"value": -5.7328899861520215}, "mds3": {"value": 2.73047266851223}, "umap_x": {"value": 7.658422}, "pca2": {"value": -1.833827551030252}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.19955250363922}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.07419}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000319", "node_attrs": {"div": 6, "num_date": {"value": 2020.1840619937675, "confidence": [2019.9723346577011, 2020.2401474143185]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-MDHHS-SC21881/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2909836065573, "confidence": [2020.2909836065573, 2020.2909836065573]}, "tsne_y": {"value": -9.56288779021829}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.866346191427965}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 19.45171805249832}, "tsne_x": {"value": -5.654402269750858}, "mds3": {"value": 0.8242904910900397}, "umap_x": {"value": 7.6763315}, "pca2": {"value": -1.8866703636288653}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.120925146307128}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.884329}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A672G", "C4582T", "C6606T"]}}}, {"name": "NODE_0000732", "node_attrs": {"div": 8, "num_date": {"value": 2020.2795715012585, "confidence": [2020.0819117789827, 2020.369032776859]}}, "branch_attrs": {"mutations": {"nuc": ["C16260T", "C28821A"]}}, "children": [{"name": "USA/CO-CDPHE-2008230832/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6379781420765, "confidence": [2020.6379781420765, 2020.6379781420765]}, "tsne_y": {"value": -10.656316137100982}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.897097045233586}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -1.362049797505221}, "tsne_x": {"value": -5.185844804306617}, "mds3": {"value": 10.574464526861076}, "umap_x": {"value": 7.476073}, "pca2": {"value": -0.0603364573369758}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -12.093697038149324}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.709732}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4331T", "C5339T", "C5893T", "C8140T", "C8208T", "C18188T", "G25440T", "C26522T", "G29477T"]}}}, {"name": "NODE_0000322", "node_attrs": {"div": 8, "num_date": {"value": 2020.3285800037202, "confidence": [2020.0775297912455, 2020.3821443635852]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MD-UW-5500285/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.561475409836, "confidence": [2020.561475409836, 2020.561475409836]}, "tsne_y": {"value": -10.821197647489026}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.65937974925541}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.029874868852612}, "tsne_x": {"value": -4.331957944101599}, "mds3": {"value": 2.4578507719197447}, "umap_x": {"value": 7.657987}, "pca2": {"value": 30.452228372224848}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.094794105194771}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.279856}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G10943A", "C17550T", "G18394T", "C21530G", "T21534A", "G21535T", "A21536C", "C22323A", "T22384C", "G26230C", "G27916T"], "S": ["S254Y"]}, "labels": {"aa": "S: S254Y"}}}, {"name": "USA/ID-UI-IIDS-U1029/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.8811475409836, "confidence": [2020.8811475409836, 2020.8811475409836]}, "tsne_y": {"value": -8.927414116732882}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Idaho"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.917151828659328}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.589163458598311}, "tsne_x": {"value": -7.193082334374285}, "mds3": {"value": 8.67171980108946}, "umap_x": {"value": 8.312846}, "pca2": {"value": 0.8283008187602056}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -23.358251211722887}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.522739}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G806A", "C832T", "T1936C", "C4582T", "C6968T", "C13487T", "T20331C", "C21707T", "C23557T", "C23635T", "C24937T", "G26690T", "C28087T", "T28879C"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}}]}]}]}]}, {"name": "NODE_0000325", "node_attrs": {"div": 6, "num_date": {"value": 2020.0612318486371, "confidence": [2019.9983346963231, 2020.1571576521064]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000762", "node_attrs": {"div": 7, "num_date": {"value": 2020.1619536015385, "confidence": [2020.1207922049805, 2020.207202788604]}}, "branch_attrs": {"mutations": {"nuc": ["C11916T"]}}, "children": [{"name": "NODE_0000327", "node_attrs": {"div": 7, "num_date": {"value": 2020.2114480792318, "confidence": [2020.1520089379715, 2020.25]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CT-Yale-241/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -9.940289199442834}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Connecticut"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -3.36025675660114}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 51.41824688437264}, "tsne_x": {"value": -5.595055314490575}, "mds3": {"value": 0.7068610165487109}, "umap_x": {"value": 7.6581388}, "pca2": {"value": 0.1453274237237269}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.2366184405287246}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.04633}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C29614T"]}}}, {"name": "NODE_0000329", "node_attrs": {"div": 7, "num_date": {"value": 2020.2388117630237, "confidence": [2020.1440867853678, 2020.4170315922274]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TN-SPHL-02984/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5396174863388, "confidence": [2020.5396174863388, 2020.5396174863388]}, "tsne_y": {"value": -10.216695887999204}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.509"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tennessee"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -9.303391535185844}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 54.436177477079205}, "tsne_x": {"value": -4.532619533369254}, "mds3": {"value": 0.4381326793502766}, "umap_x": {"value": 7.5073004}, "pca2": {"value": 0.3987106883604929}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.931578335876821}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.95042}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1738T", "G3242A", "C4540T", "G13571T", "G16564T", "C28087T", "C28531T"]}}}, {"name": "NODE_0000330", "node_attrs": {"div": 7, "num_date": {"value": 2020.3254916415372, "confidence": [2020.1286794832772, 2020.4131811441016]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TN-SPHL-05022/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_y": {"value": -9.379740501379734}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tennessee"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.012674611460568}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -4.742235766293033}, "tsne_x": {"value": -6.581787324272711}, "mds3": {"value": 3.7884389948027137}, "umap_x": {"value": 7.9565706}, "pca2": {"value": -5.006166266529504}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.596293844088788}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.912809}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["T4882C", "C5051T", "C9592T", "C10138T", "C14649T", "G18028T", "G23311T", "C23987T", "C25658T", "C28310T", "G28851T", "G29737A"], "S": ["E583D", "P809S"]}, "labels": {"aa": "S: E583D, P809S"}}}, {"name": "KOR/KD-Cov-N16/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7390710382513, "confidence": [2020.7390710382513, 2020.7390710382513]}, "tsne_y": {"value": -9.251618082423516}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.497"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Korea"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.47609835098246}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9564147953047057}, "tsne_x": {"value": -6.703220215127713}, "mds3": {"value": 2.9496203121018074}, "umap_x": {"value": 7.448004}, "pca2": {"value": 0.0268014650167427}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.15230374981429}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.886715}, "country": {"value": "South Korea"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C344T", "G7331A", "C16650T", "G18027T", "A20675T", "C28606T", "G29179T", "G29745T", "G29755T", "G29779T"]}}}]}]}]}, {"name": "NODE_0000766", "node_attrs": {"div": 9, "num_date": {"value": 2020.211601646089, "confidence": [2020.1868450702852, 2020.2254098360656]}}, "branch_attrs": {"mutations": {"nuc": ["C18998T", "G29540A"]}}, "children": [{"name": "BRA/RJ01/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_y": {"value": -9.980827320323788}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.878579338269955}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.156991162392432}, "tsne_x": {"value": -4.036758859677196}, "mds3": {"value": 3.2368584534693805}, "umap_x": {"value": 7.6218367}, "pca2": {"value": -15.855687916311336}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.999952808582863}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.70817}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G598T"]}}}, {"name": "NODE_0000332", "node_attrs": {"div": 9, "num_date": {"value": 2020.328695047075, "confidence": [2020.1443286194617, 2020.4720403064157]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000333", "node_attrs": {"div": 9, "num_date": {"value": 2020.32879203981, "confidence": [2020.1656205895456, 2020.4885667979252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2008060436/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.594262295082, "confidence": [2020.594262295082, 2020.594262295082]}, "tsne_y": {"value": -9.805967105014687}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.503"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.05787767546868}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 14.612031446910107}, "tsne_x": {"value": -3.928775474108406}, "mds3": {"value": 0.1241543746848404}, "umap_x": {"value": 7.506016}, "pca2": {"value": -7.730115092628767}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.56125155916862}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.776633}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2822T", "G3259T", "C12513T", "C12525T", "C15108T", "G24928T", "G25947C", "C28887T"]}}}, {"name": "ISR/NH_GD2_0714/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5341530054645, "confidence": [2020.5341530054645, 2020.5341530054645]}, "tsne_y": {"value": -9.992473908081053}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Israel"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.699558110683405}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.775312881480429}, "tsne_x": {"value": -3.8469429769373535}, "mds3": {"value": 4.6985702315307245}, "umap_x": {"value": 7.478198}, "pca2": {"value": -13.125416934537196}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.111083556686436}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.910902}, "country": {"value": "Israel"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6807T", "G26217T", "G26709T", "C27925T", "A29752T"]}}}]}, {"name": "NODE_0000769", "node_attrs": {"div": 10, "num_date": {"value": 2020.4151337878372, "confidence": [2020.2837971583172, 2020.52868852459]}}, "branch_attrs": {"mutations": {"nuc": ["C28863T"]}}, "children": [{"name": "PRY/WOR12903A606_202103291_2-4710517/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.52868852459, "confidence": [2020.52868852459, 2020.52868852459]}, "tsne_y": {"value": -10.07475953954657}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.45126825827379}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.968214621327028}, "tsne_x": {"value": -3.691494137384731}, "mds3": {"value": 3.6373549254517297}, "umap_x": {"value": 7.6008387}, "pca2": {"value": -10.483648964378936}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.418954038446467}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.034616}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C1471A", "G28307A"]}}}, {"name": "NODE_0000336", "node_attrs": {"div": 10, "num_date": {"value": 2020.4586724081958, "confidence": [2020.2849540024822, 2020.5680566869416]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000773", "node_attrs": {"div": 15, "num_date": {"value": 2020.670744825668, "confidence": [2020.587029231842, 2020.6989805752432]}}, "branch_attrs": {"mutations": {"nuc": ["T202C", "G1274T", "G8287A", "G23522C", "C29358T"], "S": ["E654Q"]}, "labels": {"aa": "S: E654Q"}}, "children": [{"name": "ARG/Cordoba-15976/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_y": {"value": -10.19134047506258}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.33156459278052}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.879876304113341}, "tsne_x": {"value": -3.2201055139745964}, "mds3": {"value": 8.397508309046161}, "umap_x": {"value": 7.548377}, "pca2": {"value": 11.399208229084875}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.64638074692428}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.702093}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C18692T"]}}}, {"name": "ARG/Cordoba-3199/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7117486338798, "confidence": [2020.7117486338798, 2020.7117486338798]}, "tsne_y": {"value": -10.18914486162158}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.972944600517021}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.892676332645409}, "tsne_x": {"value": -3.2219183749579234}, "mds3": {"value": 6.998491999773995}, "umap_x": {"value": 7.448863}, "pca2": {"value": 12.565660973267846}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -13.261040007351532}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.9190445}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5221T"]}}}]}, {"name": "NODE_0000339", "node_attrs": {"div": 10, "num_date": {"value": 2020.465384928324, "confidence": [2020.2927171559638, 2020.5777732872402]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARG/Cordoba-2932/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.700819672131, "confidence": [2020.700819672131, 2020.700819672131]}, "tsne_y": {"value": -10.086673578812963}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.754117199270905}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.959764623084796}, "tsne_x": {"value": -3.621429892889272}, "mds3": {"value": 5.7771111944639495}, "umap_x": {"value": 7.44882}, "pca2": {"value": 12.114215059164277}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.834923508756246}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.526626}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4540T", "A8031G", "G11083T", "G20758T", "C21714T"], "S": ["T51I"]}, "labels": {"aa": "S: T51I"}}}, {"name": "NODE_0000341", "node_attrs": {"div": 10, "num_date": {"value": 2020.511813982838, "confidence": [2020.2883898242328, 2020.5743614490282]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARG/Cordoba-919/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_y": {"value": -10.252519103875285}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.779881605507851}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.927480198184024}, "tsne_x": {"value": -3.604581199103226}, "mds3": {"value": 7.415664114120503}, "umap_x": {"value": 7.642377}, "pca2": {"value": 11.896140575572788}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -16.699884776772777}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.387943}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A642G", "A2647G", "C7279T", "C7528T", "C9746T", "C10450T", "C29445T", "C29555T"]}}}, {"name": "NODE_0000342", "node_attrs": {"div": 10, "num_date": {"value": 2020.5310693290476, "confidence": [2020.2921861392415, 2020.5952180388886]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Argentina/UW20122871200/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.99043715847, "confidence": [2020.99043715847, 2020.99043715847]}, "tsne_y": {"value": -10.097603421828104}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.676643144987734}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.019625110260403}, "tsne_x": {"value": -3.517521934395987}, "mds3": {"value": 0.8954357875516155}, "umap_x": {"value": 7.4178085}, "pca2": {"value": 30.40320889869846}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.865600442606748}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.996055}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A5715G", "A5879G", "C6037T", "C15240T", "A21592C", "C28987T", "C29420T"]}}}, {"name": "ARG/Cordoba-83535/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.700819672131, "confidence": [2020.700819672131, 2020.700819672131]}, "tsne_y": {"value": -10.084593196055852}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.499"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.745813403206684}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.964937755606641}, "tsne_x": {"value": -3.504090405960828}, "mds3": {"value": 8.438577341036126}, "umap_x": {"value": 7.4637146}, "pca2": {"value": 12.562177078302994}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -14.728521271348503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.837253}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6446T", "C16762T", "T21408C", "G23438T", "T24175G", "A25351C", "G28321T"], "S": ["A626S"]}, "labels": {"aa": "S: A626S"}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000344", "node_attrs": {"div": 6, "num_date": {"value": 2020.1269268656408, "confidence": [2019.9841346525702, 2020.1607152103138]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000754", "node_attrs": {"div": 7, "num_date": {"value": 2020.1844786492654, "confidence": [2020.1341522299285, 2020.2686271508883]}}, "branch_attrs": {"mutations": {"nuc": ["C18555T"]}}, "children": [{"name": "USA/NC-CDC-STM-000015222/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_y": {"value": -8.320321488002326}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.349"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "North Carolina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.080194320219489}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.532916414524427}, "tsne_x": {"value": -7.221284258776771}, "mds3": {"value": 7.827549523824089}, "umap_x": {"value": 7.5189304}, "pca2": {"value": -17.47294531031134}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -14.619072006218904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.677982}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C140T", "G1559A", "C2433T", "C5497T", "C9661T", "G25793A", "C28720T", "A28804G", "C28892T", "G28975T"]}}}, {"name": "NODE_0000755", "node_attrs": {"div": 11, "num_date": {"value": 2020.2978694971032, "confidence": [2020.2596285517252, 2020.324034163405]}}, "branch_attrs": {"mutations": {"nuc": ["C6651T", "C18744T", "G20580T", "C25572T"]}}, "children": [{"name": "NODE_0000429", "node_attrs": {"div": 11, "num_date": {"value": 2020.3259520120225, "confidence": [2020.295844123109, 2020.3265027322404]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1499/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3265027322404, "confidence": [2020.3265027322404, 2020.3265027322404]}, "tsne_y": {"value": -8.012124522838405}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.637639957612034}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 6.337476505976238}, "tsne_x": {"value": -4.756402741689715}, "mds3": {"value": 5.053087161496592}, "umap_x": {"value": 7.6063704}, "pca2": {"value": -8.072750823566434}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.752667412182049}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.985259}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000430", "node_attrs": {"div": 11, "num_date": {"value": 2020.3292090300467, "confidence": [2020.3182678860467, 2020.3700349854882]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC2018/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.370218579235, "confidence": [2020.370218579235, 2020.370218579235]}, "tsne_y": {"value": -7.946932891082692}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.72271242136026}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.931547246629026}, "tsne_x": {"value": -4.726902970810082}, "mds3": {"value": 3.8421222999086537}, "umap_x": {"value": 7.6306796}, "pca2": {"value": -5.720494716066845}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.077216022780364}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.043243}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T10980C"]}}}, {"name": "AUS/VIC1725/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3920765027322, "confidence": [2020.3920765027322, 2020.3920765027322]}, "tsne_y": {"value": -8.024293947901283}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.1241993793519125}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 12.84291672209934}, "tsne_x": {"value": -4.756661716957813}, "mds3": {"value": 0.8872888607301657}, "umap_x": {"value": 7.648891}, "pca2": {"value": -5.046037200846578}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.8814811692248549}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.988441}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000348", "node_attrs": {"div": 11, "num_date": {"value": 2020.3098231797187, "confidence": [2020.2828137921501, 2020.3346994535518]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1655/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3346994535518, "confidence": [2020.3346994535518, 2020.3346994535518]}, "tsne_y": {"value": -7.947594213919967}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.942281724175382}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 6.7267049918548905}, "tsne_x": {"value": -4.728509713956504}, "mds3": {"value": 3.826244776972984}, "umap_x": {"value": 7.5823574}, "pca2": {"value": -7.652564056843442}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.958469778893721}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.177483}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A11061G"]}}}, {"name": "NODE_0000759", "node_attrs": {"div": 12, "num_date": {"value": 2020.3617694266738, "confidence": [2020.3275942688279, 2020.3674863387978]}}, "branch_attrs": {"mutations": {"nuc": ["G23015C"], "S": ["G485R"]}, "labels": {"aa": "S: G485R"}}, "children": [{"name": "AUS/VIC1807/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_y": {"value": -7.868591364386929}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.785665675493611}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.27886095989395}, "tsne_x": {"value": -4.70189603485621}, "mds3": {"value": 6.109512532929887}, "umap_x": {"value": 7.510605}, "pca2": {"value": -8.068053881314524}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.317169055563465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.751764}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A7990G", "A27137G"]}}}, {"name": "AUS/VIC1628/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3674863387978, "confidence": [2020.3674863387978, 2020.3674863387978]}, "tsne_y": {"value": -7.937721962510224}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.526750992842361}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 8.62827974493095}, "tsne_x": {"value": -4.728862766335007}, "mds3": {"value": 4.942517065504289}, "umap_x": {"value": 7.607452}, "pca2": {"value": -6.086967657762894}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.2551187728234785}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.992025}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000351", "node_attrs": {"div": 6, "num_date": {"value": 2020.1278654307707, "confidence": [2019.9956724144834, 2020.1610828595278]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000748", "node_attrs": {"div": 10, "num_date": {"value": 2020.2796427513106, "confidence": [2020.180091616044, 2020.3086942724376]}}, "branch_attrs": {"mutations": {"nuc": ["T20049C", "C21627A", "C23655T", "T27586C"], "S": ["T22N", "S698L"]}, "labels": {"aa": "S: T22N, S698L"}}, "children": [{"name": "USA/UT-04082/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_y": {"value": -8.866997226786351}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -6.362748175423511}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 48.27709643547258}, "tsne_x": {"value": -6.310917992137379}, "mds3": {"value": 1.4167530415524117}, "umap_x": {"value": 7.626216}, "pca2": {"value": -10.931012541224549}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.117754768131217}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.879289}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T10636C", "C20259T", "G28985T"]}}}, {"name": "USA/UT-03039/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3319672131147, "confidence": [2020.3319672131147, 2020.3319672131147]}, "tsne_y": {"value": -8.906795869702036}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.118506981335187}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.28511494700365}, "tsne_x": {"value": -6.33924860518506}, "mds3": {"value": 4.0854090278165245}, "umap_x": {"value": 7.6167493}, "pca2": {"value": -16.83168549860943}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.167862083255063}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.881074}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G23856T", "G28960T"], "S": ["R765L"]}, "labels": {"aa": "S: R765L"}}}]}, {"name": "NODE_0000355", "node_attrs": {"div": 6, "num_date": {"value": 2020.1465585850513, "confidence": [2020.1163962208423, 2020.1633878382252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000357", "node_attrs": {"div": 6, "num_date": {"value": 2020.1598561488734, "confidence": [2020.1246444759208, 2020.1913310481011]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-QDX-1563/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2062841530055, "confidence": [2020.2062841530055, 2020.2062841530055]}, "tsne_y": {"value": -9.952937444096689}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.046226594709005}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.921705174380776}, "tsne_x": {"value": -5.754073723778255}, "mds3": {"value": 2.851831511756977}, "umap_x": {"value": 7.624453}, "pca2": {"value": -0.2540115190688664}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.184940446706113}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.901714}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A29700G"]}}}, {"name": "NODE_0000358", "node_attrs": {"div": 6, "num_date": {"value": 2020.168574714479, "confidence": [2020.1462055680136, 2020.1961465314243]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000728", "node_attrs": {"div": 8, "num_date": {"value": 2020.2796500067532, "confidence": [2020.2238881094836, 2020.3079141276658]}}, "branch_attrs": {"mutations": {"nuc": ["T1666C", "A6371C"]}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0197/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3155737704917, "confidence": [2020.3155737704917, 2020.3155737704917]}, "tsne_y": {"value": -9.40794177824162}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.099359609554912}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.362297624803211}, "tsne_x": {"value": -5.759464967618185}, "mds3": {"value": 3.935458161306872}, "umap_x": {"value": 7.574921}, "pca2": {"value": 15.178982190051704}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.2538987455304085}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.736246}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T6148C", "C27679T"]}}}, {"name": "CHL/Santiago-PUC_MVL_0540/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.4002732240438, "confidence": [2020.4002732240438, 2020.4002732240438]}, "tsne_y": {"value": -9.607376601408902}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.9930745713986}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.44038166457938}, "tsne_x": {"value": -5.713326685713107}, "mds3": {"value": 3.6356405965312217}, "umap_x": {"value": 7.5927997}, "pca2": {"value": 15.759263009549253}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.536453969377906}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.207823}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T28693C"]}}}]}, {"name": "NODE_0000360", "node_attrs": {"div": 6, "num_date": {"value": 2020.1841869043205, "confidence": [2020.1626183409812, 2020.194559701681]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC168/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_y": {"value": -9.950441062382769}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.619892545446721}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 1.1621528644860366}, "tsne_x": {"value": -5.736492836996495}, "mds3": {"value": 2.335525654495328}, "umap_x": {"value": 7.619134}, "pca2": {"value": -0.9889056153852458}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.2408931594295791}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.14431}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A20755C"]}}}, {"name": "NODE_0000362", "node_attrs": {"div": 6, "num_date": {"value": 2020.1847549531728, "confidence": [2020.1704678519347, 2020.1999880210892]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000364", "node_attrs": {"div": 6, "num_date": {"value": 2020.1935693736518, "confidence": [2020.1769711569905, 2020.2075706059209]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-QDX-1605/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_y": {"value": -9.97956646680852}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.320"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.846346220868623}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.9196166728665776}, "tsne_x": {"value": -5.636188501475839}, "mds3": {"value": 3.237449935313839}, "umap_x": {"value": 7.575095}, "pca2": {"value": -0.2731059311745268}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.801218403976802}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.541866}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "C7765T"]}}}, {"name": "NODE_0000365", "node_attrs": {"div": 6, "num_date": {"value": 2020.2097676565143, "confidence": [2020.176190054326, 2020.2739612069142]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000366", "node_attrs": {"div": 6, "num_date": {"value": 2020.2358227260056, "confidence": [2020.173448834681, 2020.2768658232158]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AZ-209/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.282786885246, "confidence": [2020.282786885246, 2020.282786885246]}, "tsne_y": {"value": -9.94996381341645}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.127641146869756}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.143723192428382}, "tsne_x": {"value": -5.726192961121564}, "mds3": {"value": 3.534111799353871}, "umap_x": {"value": 7.5659404}, "pca2": {"value": -9.16640717158208}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.5034336243967026}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.556747}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C22295T"], "S": ["H245Y"]}, "labels": {"aa": "S: H245Y"}}}, {"name": "USA/MA-MASPHL-00456/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_y": {"value": -9.08877735508179}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.356218828753578}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.205156926545797}, "tsne_x": {"value": -5.250015527665926}, "mds3": {"value": 5.172611568272897}, "umap_x": {"value": 7.567938}, "pca2": {"value": -16.7649175247578}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.041557202225872}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.768107}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A3132C", "C5886T", "G20919T", "G22244C", "C22858T"], "S": ["D228H"]}, "labels": {"aa": "S: D228H"}}}]}, {"name": "NODE_0000751", "node_attrs": {"div": 7, "num_date": {"value": 2020.2908154954653, "confidence": [2020.2425950429222, 2020.3319672131147]}}, "branch_attrs": {"mutations": {"nuc": ["G28300T"]}}, "children": [{"name": "USA/MN-CDC-STM-000012349/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.1109589041096, "confidence": [2021.1109589041096, 2021.1109589041096]}, "tsne_y": {"value": -8.614566466222843}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.311"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.56125548510368}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.8860553924390615}, "tsne_x": {"value": -6.914961921869045}, "mds3": {"value": 1.4106265179030255}, "umap_x": {"value": 8.250388}, "pca2": {"value": -6.069118347603874}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.163671785243439}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.344971}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G204T", "C4754T", "A5011C", "A8456C", "C12525T", "G14118T", "G19009T", "G19180T", "G21824C", "G24781T", "C27920T", "C27923T", "A28254-", "C28677T", "C28893T", "C28988-", "A28989-", "A28990-", "C29445T"], "S": ["D88H", "K1073N"]}, "labels": {"aa": "S: D88H, K1073N"}}}, {"name": "USA/MA-MGH-01065/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3319672131147, "confidence": [2020.3319672131147, 2020.3319672131147]}, "tsne_y": {"value": -9.778637019054088}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.969368623691212}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.51274899964768}, "tsne_x": {"value": -5.704624569799363}, "mds3": {"value": 2.921614983745996}, "umap_x": {"value": 7.668992}, "pca2": {"value": -11.590497843263226}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.571511708735355}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.46817}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G23587T", "G26155-", "T26156-", "T26157-"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}]}]}]}, {"name": "NODE_0000368", "node_attrs": {"div": 6, "num_date": {"value": 2020.2011212808557, "confidence": [2020.1685014664204, 2020.2357576954314]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000369", "node_attrs": {"div": 6, "num_date": {"value": 2020.2363062001334, "confidence": [2020.203497264619, 2020.2390710382513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR2670/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_y": {"value": -10.04743871977492}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.22966993770624}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 7.989367309358446}, "tsne_x": {"value": -5.829127543674359}, "mds3": {"value": 3.0158046248564445}, "umap_x": {"value": 7.6500096}, "pca2": {"value": -3.328658260592235}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.753063794948853}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.960077}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/TG305914/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3265027322404, "confidence": [2020.3265027322404, 2020.3265027322404]}, "tsne_y": {"value": -9.825586725860362}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.371"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.289289492341259}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -8.506885375157749}, "tsne_x": {"value": -5.490386008159475}, "mds3": {"value": 2.5331580747204714}, "umap_x": {"value": 7.497262}, "pca2": {"value": -1.5155980598953096}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.383019893642988}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.986393}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G4720T", "A29257T", "G29553A"]}}}]}, {"name": "NODE_0000370", "node_attrs": {"div": 6, "num_date": {"value": 2020.2352072035424, "confidence": [2020.2034950307384, 2020.2390710382513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0041/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_y": {"value": -9.983721421287209}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.802080029609675}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.374269035393508}, "tsne_x": {"value": -5.82278044052766}, "mds3": {"value": 3.5384797513015327}, "umap_x": {"value": 7.55741}, "pca2": {"value": 15.177059436302352}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.0668026102899}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.814655}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000778", "node_attrs": {"div": 7, "num_date": {"value": 2020.279454155546, "confidence": [2020.2260593640415, 2020.340071403133]}}, "branch_attrs": {"mutations": {"nuc": ["G28857A"]}}, "children": [{"name": "NODE_0000783", "node_attrs": {"div": 9, "num_date": {"value": 2020.361840771473, "confidence": [2020.2745421278046, 2020.4573949851665]}}, "branch_attrs": {"mutations": {"nuc": ["T25468C", "T27901C"]}}, "children": [{"name": "KEN/SS2816/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7581967213114, "confidence": [2020.7581967213114, 2020.7581967213114]}, "tsne_y": {"value": -10.465728916621783}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.396389819227863}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 21.603018105739825}, "tsne_x": {"value": -4.7338702198934905}, "mds3": {"value": -2.595329377886064}, "umap_x": {"value": 7.704172}, "pca2": {"value": 4.502467593377312}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.318449873097303}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.331141}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A870G", "G3431T", "G4136T", "G4925T", "A12936G", "C18312T", "A25201G", "G28001T", "C28854T", "G29742T"]}}}, {"name": "KEN/KEM-20-07-40604/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_y": {"value": -8.938797097436057}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.040033446424351}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 2.896655015862633}, "tsne_x": {"value": -4.64536181390259}, "mds3": {"value": 3.1010756188248685}, "umap_x": {"value": 7.49967}, "pca2": {"value": 17.4372110393885}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -12.049759413541077}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.563806}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2295T", "C3096T", "C12525T", "G20578T", "C22281T", "G29179T"], "S": ["T240I"]}, "labels": {"aa": "S: T240I"}}}]}, {"name": "NODE_0000378", "node_attrs": {"div": 7, "num_date": {"value": 2020.2998546347173, "confidence": [2020.238084565648, 2020.3478369738016]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/D5/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.389344262295, "confidence": [2020.389344262295, 2020.389344262295]}, "tsne_y": {"value": -9.11445945349243}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.88526497744808}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 3.408923244055804}, "tsne_x": {"value": -4.624370909326793}, "mds3": {"value": 3.758715844721047}, "umap_x": {"value": 7.538434}, "pca2": {"value": 12.24955010407363}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.36849909693435}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.846478}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T2341C", "C8320T", "C13168T", "C26447T", "T28843C"]}}}, {"name": "NODE_0000379", "node_attrs": {"div": 7, "num_date": {"value": 2020.3285605767408, "confidence": [2020.2852114401194, 2020.420644903831]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000380", "node_attrs": {"div": 7, "num_date": {"value": 2020.3656413979113, "confidence": [2020.2928016354433, 2020.4426296033732]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/K26778/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5642076502731, "confidence": [2020.5642076502731, 2020.5642076502731]}, "tsne_y": {"value": -9.07365305833696}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.664979905212089}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.887292946085232}, "tsne_x": {"value": -4.50912829114463}, "mds3": {"value": 4.70765554048377}, "umap_x": {"value": 7.429603}, "pca2": {"value": -0.2666881397324763}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.481919151514948}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.171234}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G600A", "C8139T", "G13459T", "C21057T", "A21169G", "G28845T"]}}}, {"name": "KEN/KEM-20-07-54817/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5806010928961, "confidence": [2020.5806010928961, 2020.5806010928961]}, "tsne_y": {"value": -9.35611084985598}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.485390542435295}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.001552584250811}, "tsne_x": {"value": -4.775905968033547}, "mds3": {"value": 3.8684181260946366}, "umap_x": {"value": 7.590464}, "pca2": {"value": 13.51807319650155}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.817697259394328}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.374655}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A1278G", "C1489T", "C11103A", "G24257T"], "S": ["A899S"]}, "labels": {"aa": "S: A899S"}}}]}, {"name": "NODE_0000382", "node_attrs": {"div": 7, "num_date": {"value": 2020.3673325285752, "confidence": [2020.289681489549, 2020.4253997804685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C21582/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4658469945355, "confidence": [2020.4658469945355, 2020.4658469945355]}, "tsne_y": {"value": -9.25465075713022}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.67186940631227}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.884774094877685}, "tsne_x": {"value": -4.6156971838535865}, "mds3": {"value": 4.960601237684133}, "umap_x": {"value": 7.6062603}, "pca2": {"value": -0.2717112327893926}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.780489172446693}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.037603}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1177C", "C8092T", "C14676T", "C19269T", "C19317T"]}}}, {"name": "NODE_0000781", "node_attrs": {"div": 8, "num_date": {"value": 2020.5395474197958, "confidence": [2020.3689867238677, 2020.6806631655552]}}, "branch_attrs": {"mutations": {"nuc": ["C28830T"]}}, "children": [{"name": "KEN/C71987/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8784153005465, "confidence": [2020.8784153005465, 2020.8784153005465]}, "tsne_y": {"value": -10.738485045741774}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.215180839465145}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -0.4111989294344993}, "tsne_x": {"value": -4.694147122653536}, "mds3": {"value": 4.043418474548406}, "umap_x": {"value": 7.487949}, "pca2": {"value": 1.5325835816339584}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.579734490816}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.932622}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2106T", "C12823T", "A19339G", "C20669T", "G24047A", "T24085A", "C25460T", "C27982T"], "S": ["A829T"]}, "labels": {"aa": "S: A829T"}}}, {"name": "KEN/K93252/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.8483606557377, "confidence": [2020.8483606557377, 2020.8483606557377]}, "tsne_y": {"value": -9.472437097558776}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.785938602913166}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.917014572659485}, "tsne_x": {"value": -4.739853377277541}, "mds3": {"value": 3.275358613465776}, "umap_x": {"value": 7.609633}, "pca2": {"value": -0.2708483352809254}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.00070051567729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.4423}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A3064G", "C10232T", "G24781T"], "S": ["K1073N"]}, "labels": {"aa": "S: K1073N"}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000384", "node_attrs": {"div": 6, "num_date": {"value": 2020.1599258710635, "confidence": [2020.1337349994094, 2020.1634380193423]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CT-QDX-1454/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2062841530055, "confidence": [2020.2062841530055, 2020.2062841530055]}, "tsne_y": {"value": -9.943729514787464}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Connecticut"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.948916488995689}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.9236822931284494}, "tsne_x": {"value": -5.741349977082384}, "mds3": {"value": 2.8989568934940784}, "umap_x": {"value": 7.6785836}, "pca2": {"value": -0.2716981409301476}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.2297804131619103}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.96842}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G24095T"], "S": ["A845S"]}, "labels": {"aa": "S: A845S"}}}, {"name": "NODE_0000385", "node_attrs": {"div": 6, "num_date": {"value": 2020.1620906518492, "confidence": [2020.1448223335015, 2020.168755449781]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ISR/hCov-19-Israel-CVL-n-6136/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2035519125684, "confidence": [2020.2035519125684, 2020.2035519125684]}, "tsne_y": {"value": -9.913747123721246}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Israel"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.079813072074307}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.129797036340834}, "tsne_x": {"value": -5.688255001269744}, "mds3": {"value": 2.917570605174841}, "umap_x": {"value": 7.619085}, "pca2": {"value": -19.20037464862084}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.9574970423934617}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.598085}, "country": {"value": "Israel"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G4504T", "A10994G"]}}}, {"name": "NODE_0000386", "node_attrs": {"div": 6, "num_date": {"value": 2020.1692917014032, "confidence": [2020.158768511494, 2020.1707650273224]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Iceland/27/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.1707650273224, "confidence": [2020.1707650273224, 2020.1707650273224]}, "tsne_y": {"value": -10.002130438140334}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Iceland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.628627842045591}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.881566794685329}, "tsne_x": {"value": -5.810385642106666}, "mds3": {"value": 3.2730105858642533}, "umap_x": {"value": 7.5901604}, "pca2": {"value": -8.619240352645457}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.0236285319694094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.769653}, "country": {"value": "Iceland"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000388", "node_attrs": {"div": 6, "num_date": {"value": 2020.1707650273224, "confidence": [2020.1549865137195, 2020.2218337143538]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-1179/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_y": {"value": -9.895323105585137}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.337539282039011}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.092818618093001}, "tsne_x": {"value": -5.615542346078636}, "mds3": {"value": 3.4525556236086}, "umap_x": {"value": 7.6126733}, "pca2": {"value": -6.789330293988683}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.826746977623536}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.454885}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C26456T", "G29557T"]}}}, {"name": "NODE_0000389", "node_attrs": {"div": 6, "num_date": {"value": 2020.1842287466607, "confidence": [2020.1694813034521, 2020.2236312097052]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-0689/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.233606557377, "confidence": [2020.233606557377, 2020.233606557377]}, "tsne_y": {"value": -9.900545490981417}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.170079478851122}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.732216890722641}, "tsne_x": {"value": -5.659828631931718}, "mds3": {"value": 3.0257225126332763}, "umap_x": {"value": 7.6463194}, "pca2": {"value": -10.133051370939237}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.933071921783767}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.681705}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "C16887T"]}}}, {"name": "NODE_0000390", "node_attrs": {"div": 6, "num_date": {"value": 2020.1934524297421, "confidence": [2020.164905008101, 2020.222528329474]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-0696/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2418032786886, "confidence": [2020.2418032786886, 2020.2418032786886]}, "tsne_y": {"value": -9.91211464802524}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.1253542917299404}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 1.2086447421227071}, "tsne_x": {"value": -5.761823862858493}, "mds3": {"value": 1.18343541141436}, "umap_x": {"value": 7.65782}, "pca2": {"value": -11.472084630544876}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.009935378948943}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.102207}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C1917T"]}}}, {"name": "NODE_0000397", "node_attrs": {"div": 6, "num_date": {"value": 2020.2105280465523, "confidence": [2020.1507725386452, 2020.2306021228483]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000736", "node_attrs": {"div": 7, "num_date": {"value": 2020.2904210462605, "confidence": [2020.1677234023957, 2020.4023492030287]}}, "branch_attrs": {"mutations": {"nuc": ["A10323G"]}}, "children": [{"name": "NODE_0000737", "node_attrs": {"div": 9, "num_date": {"value": 2020.4086412918698, "confidence": [2020.254265798582, 2020.4545203007106]}}, "branch_attrs": {"mutations": {"nuc": ["T15276A", "G28842T"]}}, "children": [{"name": "USA/TX-DSHS-1767/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_y": {"value": -8.972306770239847}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Texas"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -6.697384493563582}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 26.28650531404348}, "tsne_x": {"value": -5.204670777499465}, "mds3": {"value": 4.1755530778645005}, "umap_x": {"value": 7.622617}, "pca2": {"value": -18.57214482189938}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.428559690947871}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.313782}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G6421T", "C17913T"]}}}, {"name": "USA/WV090278/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_y": {"value": -7.866934182987409}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.568"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "West Virginia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -36.87822691665546}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.405246586064689}, "tsne_x": {"value": -6.032739687770138}, "mds3": {"value": 0.1788349030877532}, "umap_x": {"value": 8.68981}, "pca2": {"value": -8.173504574137338}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.858450486260745}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.598249}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C140A", "G1135T", "G1820A", "C3176T", "C5654T", "C10450T", "C12049T", "C12455A", "C16428T", "G16935T", "C17483T", "T19704C", "C21302T", "C21304A", "G21305A", "C23243T", "G23384A", "G25166C", "G25913A", "G27916T", "C29730-", "A29731-", "C29732-", "C29733-", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-"], "S": ["P561S", "V608I", "E1202Q"]}, "labels": {"aa": "S: P561S, V608I, E1202Q"}}}]}, {"name": "NODE_0000400", "node_attrs": {"div": 7, "num_date": {"value": 2020.328620945342, "confidence": [2020.1704680700877, 2020.4044028492965]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LR963369", "node_attrs": {"div": 10, "num_date": {"value": 2020.4166666666667, "confidence": [2020.4166666666667, 2020.4166666666667]}, "tsne_y": {"value": -9.59929133732886}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Zimbabwe"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.288261556384938}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 5.763619382742221}, "tsne_x": {"value": -5.019263052381386}, "mds3": {"value": 2.946096949109993}, "umap_x": {"value": 7.632238}, "pca2": {"value": -1.3002770202865226}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.544203598610466}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.988745}, "country": {"value": "Zimbabwe"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G5230T", "C13665T", "T14345G"]}}}, {"name": "NODE_0000739", "node_attrs": {"div": 11, "num_date": {"value": 2020.5279307386718, "confidence": [2020.3715167682126, 2020.6702393537992]}}, "branch_attrs": {"mutations": {"nuc": ["G569C", "C28310T", "G28857A", "C28892A"]}}, "children": [{"name": "NODE_0000744", "node_attrs": {"div": 14, "num_date": {"value": 2020.7103562804243, "confidence": [2020.6065413350402, 2020.8067073717955]}}, "branch_attrs": {"mutations": {"nuc": ["C2485T", "T27618C", "G27708T"]}}, "children": [{"name": "KEN/C69432/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8428961748634, "confidence": [2020.8428961748634, 2020.8428961748634]}, "tsne_y": {"value": -8.500195070648228}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.760180674343871}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.348347034811446}, "tsne_x": {"value": -3.413777041302997}, "mds3": {"value": 10.254257995410624}, "umap_x": {"value": 7.6233087}, "pca2": {"value": 1.286960256762118}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.35341341330744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.381995}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6872T", "C16428T", "C17474T", "C28290T"]}}}, {"name": "KEN/C66867/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_y": {"value": -8.53456486819978}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.942596163349654}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.179272218978443}, "tsne_x": {"value": -3.4426007958837035}, "mds3": {"value": 6.127214491764613}, "umap_x": {"value": 7.4420133}, "pca2": {"value": 0.7974079724727062}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.588153833372091}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.454843}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}}]}, {"name": "NODE_0000403", "node_attrs": {"div": 11, "num_date": {"value": 2020.5609322040873, "confidence": [2020.3747124093475, 2020.670909894243]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS2790/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6789617486338, "confidence": [2020.6789617486338, 2020.6789617486338]}, "tsne_y": {"value": -8.578466130321614}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.304249043298892}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 9.317514705620685}, "tsne_x": {"value": -3.514580477403149}, "mds3": {"value": 6.106951546615531}, "umap_x": {"value": 7.445604}, "pca2": {"value": 4.000306097719456}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.112023442674207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.281666}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4680T", "T8234C", "C11833T", "G29427T"]}}}, {"name": "NODE_0000404", "node_attrs": {"div": 11, "num_date": {"value": 2020.589517272996, "confidence": [2020.3767774557205, 2020.6764517547692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS2805/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7117486338798, "confidence": [2020.7117486338798, 2020.7117486338798]}, "tsne_y": {"value": -8.590149428035048}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.011277692231715}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.855421263379452}, "tsne_x": {"value": -3.521114294466339}, "mds3": {"value": 5.975409558502248}, "umap_x": {"value": 7.4532137}, "pca2": {"value": -0.269652849309349}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.51154452787349}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.046962}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A4123C", "G27382T"]}}}, {"name": "NODE_0000405", "node_attrs": {"div": 11, "num_date": {"value": 2020.602214944761, "confidence": [2020.3791468518687, 2020.6864971569682]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C69611/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.8428961748634, "confidence": [2020.8428961748634, 2020.8428961748634]}, "tsne_y": {"value": -8.570222275355558}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.55504393733405}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.209422535838893}, "tsne_x": {"value": -3.5170978221420603}, "mds3": {"value": 10.97908599645013}, "umap_x": {"value": 8.247022}, "pca2": {"value": 0.802732680959263}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -17.773051507567416}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.401347}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1592G", "G3471T", "A6311G", "T10933G", "C13115T", "C13665T", "C15720T", "C26456T", "C29304T", "C29503T"]}}}, {"name": "NODE_0000740", "node_attrs": {"div": 15, "num_date": {"value": 2020.7816201152475, "confidence": [2020.6514570465686, 2020.8276413415408]}}, "branch_attrs": {"mutations": {"nuc": ["G448A", "C14220T", "G21800T", "C22687T"], "S": ["D80Y"]}, "labels": {"aa": "S: D80Y"}}, "children": [{"name": "KEN/C68684/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8374316939892, "confidence": [2020.8374316939892, 2020.8374316939892]}, "tsne_y": {"value": -8.49587569700944}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.389093702375034}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.168250463935687}, "tsne_x": {"value": -3.3447966189792075}, "mds3": {"value": 7.04461623177259}, "umap_x": {"value": 7.520552}, "pca2": {"value": 0.8072663675655443}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.908285618222193}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.714383}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C9611T", "C27002T"]}}}, {"name": "KEN/C69876/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8401639344263, "confidence": [2020.8401639344263, 2020.8401639344263]}, "tsne_y": {"value": -8.501596803412307}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.335827587907838}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.448669567427935}, "tsne_x": {"value": -3.34641666346732}, "mds3": {"value": 1.98173380218522}, "umap_x": {"value": 7.4376893}, "pca2": {"value": 3.462283414086812}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -12.205756400143724}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.937229}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G219T", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000407", "node_attrs": {"div": 6, "num_date": {"value": 2020.2199321433945, "confidence": [2020.1504783578603, 2020.2331474461496]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000411", "node_attrs": {"div": 6, "num_date": {"value": 2020.2366786375933, "confidence": [2020.1492753311143, 2020.2418032786886]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-1598/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2418032786886, "confidence": [2020.2418032786886, 2020.2418032786886]}, "tsne_y": {"value": -10.0026377631955}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.2289566811973724}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.097800026585214}, "tsne_x": {"value": -5.824209435903988}, "mds3": {"value": 3.0749455577074354}, "umap_x": {"value": 7.674654}, "pca2": {"value": -10.933185375054132}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.79947691671249}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.941063}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000412", "node_attrs": {"div": 6, "num_date": {"value": 2020.2411310471807, "confidence": [2020.148855589117, 2020.328289146055]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000414", "node_attrs": {"div": 6, "num_date": {"value": 2020.2467872452078, "confidence": [2020.1507724427115, 2020.3362981663174]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DJI/NAMRU3_016/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.47131147541, "confidence": [2020.47131147541, 2020.47131147541]}, "tsne_y": {"value": -8.206231432074887}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.324"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Djibouti"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.343877828190439}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 3.5894952766874937}, "tsne_x": {"value": -6.813243047240702}, "mds3": {"value": 2.923754343730318}, "umap_x": {"value": 7.5680356}, "pca2": {"value": 0.7990936010928162}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -16.90272370639566}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.667374}, "country": {"value": "Djibouti"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "C6145T", "C7528T", "C10202T", "C12076T", "G12202T", "C18247T", "A18751G", "G27505-", "G27506-", "A27507-", "A27508-", "C27509-", "A27510-", "T27511-", "A27512-", "C27513-", "G27514-", "A27515-", "G27516-", "G27517-", "G27518-", "C27519-", "A27520-", "A27521-", "T27522-", "T27523-", "C27524-", "A27525-", "C27526-", "C27527-", "A27528-", "T27529-", "T27530-", "T27531-", "C27532-", "A27533-", "T27534-", "C27535-", "C27536-", "T27537-", "C27538-", "T27539-", "A27540-", "G27541-", "C27542-", "T27543-", "G27544-", "A27545-", "T27546-", "A27547-", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "A27624-", "C27625-", "G27626-", "T27627-", "G27628-", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "C27641-", "A27642-", "C27643-", "C27644-", "T27645-", "A27646-", "A27647-", "A27648-", "C27649-", "T27650-", "G27651-", "T27652-", "T27653-", "C27654-", "A27655-", "T27656-", "C27657-", "A27658-", "G27659-", "A27660-", "C27661-", "A27662-", "A27663-", "G27664-", "A27665-", "G27666-", "G27667-", "A27668-", "A27669-", "G27670-", "T27671-", "T27672-", "C27673-", "G28875A", "A29369-", "C29370-", "A29371-", "C29585T"]}}}, {"name": "NODE_0000415", "node_attrs": {"div": 6, "num_date": {"value": 2020.2848587336662, "confidence": [2020.1436016787882, 2020.3351459443775]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-DSHS-3993/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_y": {"value": -9.424365010043516}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Texas"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.175334176484585}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.928840175191168}, "tsne_x": {"value": -6.616373495030309}, "mds3": {"value": 6.896225268516743}, "umap_x": {"value": 7.5093646}, "pca2": {"value": 11.688811469632466}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.708983962541704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.774721}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G248T", "C335T", "C9120T", "A12197C", "C15720T", "T16425G", "G17019T"]}}}, {"name": "USA/CO-CDPHE-2005260686/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4002732240438, "confidence": [2020.4002732240438, 2020.4002732240438]}, "tsne_y": {"value": -9.25999228712361}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.308298860907678}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 14.470401381698585}, "tsne_x": {"value": -6.098354406615779}, "mds3": {"value": 1.2728350609089294}, "umap_x": {"value": 7.694902}, "pca2": {"value": -1.1626558599409769}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.777816882044595}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.80124}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G2035A", "C3593T", "A6355G", "C22624T", "C23454A"], "S": ["P631H"]}, "labels": {"aa": "S: P631H"}}}]}]}, {"name": "NODE_0000416", "node_attrs": {"div": 7, "num_date": {"value": 2020.3223037339585, "confidence": [2020.264475206489, 2020.3923384297311]}}, "branch_attrs": {"mutations": {"nuc": ["A29898G"]}}, "children": [{"name": "USA/CO-CDPHE-2007172976/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.5314207650274, "confidence": [2020.5314207650274, 2020.5314207650274]}, "tsne_y": {"value": -9.811460035766816}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.412607521360739}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 3.3318198407226105}, "tsne_x": {"value": -5.428799555325549}, "mds3": {"value": 3.846416120438794}, "umap_x": {"value": 7.4764695}, "pca2": {"value": 0.566128809133254}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.02074288025486}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.9487}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G3286A", "C12171T", "C17550T"]}}}, {"name": "NODE_0000418", "node_attrs": {"div": 7, "num_date": {"value": 2020.3286512520297, "confidence": [2020.285487994358, 2020.396431547805]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MD-MDH-0109/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_y": {"value": -9.583619072450055}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Maryland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.30191853925103}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.069140361773814}, "tsne_x": {"value": -5.437161035777185}, "mds3": {"value": 3.370063687224009}, "umap_x": {"value": 7.593689}, "pca2": {"value": -19.046197964450467}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.925782818526443}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.994831}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A4T", "C20132T", "A21137G", "G27993A"]}}}, {"name": "NODE_0000420", "node_attrs": {"div": 7, "num_date": {"value": 2020.3612670224902, "confidence": [2020.2964127231476, 2020.402235516954]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AR-CDC-3646740-001/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5177595628415, "confidence": [2020.5177595628415, 2020.5177595628415]}, "tsne_y": {"value": -10.610913852529023}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.069735460620556}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.394233931181567}, "tsne_x": {"value": -5.176049547604005}, "mds3": {"value": 4.971989052810927}, "umap_x": {"value": 7.515305}, "pca2": {"value": -15.609181859542076}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -10.38792888195058}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.945314}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G199A", "C2925T", "A8898-", "T8899-", "G8900-", "G15128T", "G17110T", "G18538T", "T20688C", "G26690T"]}}}, {"name": "NODE_0000422", "node_attrs": {"div": 7, "num_date": {"value": 2020.3830134986024, "confidence": [2020.309547069178, 2020.4363026313226]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/GA-CDC-4049121-001/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.6024590163934, "confidence": [2020.6024590163934, 2020.6024590163934]}, "tsne_y": {"value": -8.724829440742257}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.760607143208656}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.455927864479143}, "tsne_x": {"value": -5.3100411575699376}, "mds3": {"value": 5.867113150820183}, "umap_x": {"value": 7.526016}, "pca2": {"value": -8.146876211062388}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.242045158736717}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.942578}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1235A", "C6627T", "G10106A", "C14286T", "C21575T", "C21997T", "G23236T"], "S": ["L5F", "K558N"]}, "labels": {"aa": "S: L5F, K558N"}}}, {"name": "USA/CO-CDPHE-2006190291/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4603825136612, "confidence": [2020.4603825136612, 2020.4603825136612]}, "tsne_y": {"value": -9.914769073330412}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.6272930538646615}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 1.3590768294473885}, "tsne_x": {"value": -5.739649522958763}, "mds3": {"value": 2.487101282958299}, "umap_x": {"value": 7.6194997}, "pca2": {"value": -0.2648772859278578}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.071664849999098}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.120663}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G27967T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000424", "node_attrs": {"div": 6, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2135744276698, 2020.2363387978141]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR3007/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2363387978141, 2020.2363387978141]}, "tsne_y": {"value": -10.013842550998604}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.761415670939782}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.918818087800641}, "tsne_x": {"value": -5.821330536771002}, "mds3": {"value": 2.691137605273056}, "umap_x": {"value": 7.7174077}, "pca2": {"value": -0.260286663756779}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.497202207021809}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.0857}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000425", "node_attrs": {"div": 6, "num_date": {"value": 2020.2367127443008, "confidence": [2020.1495147052096, 2020.2699981227154]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG670117/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3319672131147, "confidence": [2020.3319672131147, 2020.3319672131147]}, "tsne_y": {"value": -9.282795277049864}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.576"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.576"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -5.225135845664715}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 45.34950372212709}, "tsne_x": {"value": -5.564266737147323}, "mds3": {"value": 0.4518254042041034}, "umap_x": {"value": 7.595966}, "pca2": {"value": 12.812469561400857}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.6260223884676375}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.985268}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T12883C", "C24181T", "G27165A", "G28621A"]}}}, {"name": "NODE_0000833", "node_attrs": {"div": 7, "num_date": {"value": 2020.2875528130078, "confidence": [2020.153473089374, 2020.4083123008484]}}, "branch_attrs": {"mutations": {"nuc": ["C28887T"]}}, "children": [{"name": "NODE_0000427", "node_attrs": {"div": 7, "num_date": {"value": 2020.3290347965458, "confidence": [2020.155232804756, 2020.403974939447]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000428", "node_attrs": {"div": 7, "num_date": {"value": 2020.3359539904216, "confidence": [2020.1579831056856, 2020.4131613631612]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-DSHS-0606/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_y": {"value": -9.95282111143144}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Texas"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -5.124505839206577}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 51.07165090285606}, "tsne_x": {"value": -5.062571938544326}, "mds3": {"value": 1.359587417905417}, "umap_x": {"value": 7.659046}, "pca2": {"value": -3.4667824774469107}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.7928800314468125}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.160746}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G19936A", "G22021A", "A24955C"], "S": ["M153I"]}, "labels": {"aa": "S: M153I"}}}, {"name": "NODE_0000840", "node_attrs": {"div": 13, "num_date": {"value": 2020.5293567126632, "confidence": [2020.3154077989618, 2020.6977504701931]}}, "branch_attrs": {"mutations": {"nuc": ["G17014T", "G21600T", "G22018T", "T22917G", "C26681T", "A28272T"], "S": ["S13I", "W152C", "L452R"]}, "labels": {"aa": "S: S13I, W152C, L452R"}}, "children": [{"name": "NODE_0000841", "node_attrs": {"div": 21, "num_date": {"value": 2020.9702908160107, "confidence": [2020.7878730657203, 2021.0824330970215]}}, "branch_attrs": {"mutations": {"nuc": ["T1851C", "C3619A", "G9738C", "G13713A", "C16394T", "C25317T", "T25467C", "T26066C"], "S": ["S1252F"]}, "labels": {"aa": "S: S1252F"}}, "children": [{"name": "USA/CA-CZB-27754/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.1328767123289, "confidence": [2021.1328767123289, 2021.1328767123289]}, "tsne_y": {"value": -9.4198592918191}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.427"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.9349966527274}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.86703940062851}, "tsne_x": {"value": -2.1821323440365124}, "mds3": {"value": 0.3223640703868194}, "umap_x": {"value": 8.273578}, "pca2": {"value": -10.41858509195608}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -19.808333766892183}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.352802}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5173T", "C20178T"]}}}, {"name": "USA/CA-CDC-ASC210002477/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.176712328767, "confidence": [2021.176712328767, 2021.176712328767]}, "tsne_y": {"value": -9.430227703088145}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.427"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -31.040175675609124}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 50.85184331252816}, "tsne_x": {"value": -2.172734340775093}, "mds3": {"value": -3.992965448887964}, "umap_x": {"value": 8.513016}, "pca2": {"value": -11.121064990702283}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.1593138784896001}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.974595}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1387T", "C1457T", "T4348G", "A8651G", "C15540T", "T22207C", "C28725T"]}}}]}, {"name": "NODE_0000842", "node_attrs": {"div": 20, "num_date": {"value": 2020.7074528518767, "confidence": [2020.538224719272, 2020.8558119269967]}}, "branch_attrs": {"mutations": {"nuc": ["C2395T", "T2597C", "C8947T", "C12100T", "A12878G", "T24349C", "G27890T"]}}, "children": [{"name": "USA/F4F034901CEC4A33BA6CEE085F4B39DF/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.1876712328767, "confidence": [2021.1876712328767, 2021.1876712328767]}, "tsne_y": {"value": -8.037298690134845}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "North Carolina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -33.372056865465}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 29.60771356353382}, "tsne_x": {"value": -1.5660440591131255}, "mds3": {"value": -1.1514421802490362}, "umap_x": {"value": 8.558096}, "pca2": {"value": -9.29711867044784}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.029769017344661}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.839396}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A742C", "C16457T", "T18099C", "C21364T", "G28191T", "G28975T", "A29725G"]}}}, {"name": "NODE_0000843", "node_attrs": {"div": 21, "num_date": {"value": 2020.751185762633, "confidence": [2020.574028046579, 2020.8590199799285]}}, "branch_attrs": {"mutations": {"nuc": ["C29362T"]}}, "children": [{"name": "USA/CA-CDPH-2000007267/2020", "node_attrs": {"div": 29, "num_date": {"value": 2020.9439890710382, "confidence": [2020.9439890710382, 2020.9439890710382]}, "tsne_y": {"value": -8.034978796634093}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -36.388371637907895}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.8600645274008585}, "tsne_x": {"value": -1.560526008239003}, "mds3": {"value": -0.5945014761497143}, "umap_x": {"value": 8.647788}, "pca2": {"value": -10.236665412001107}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.536812589911023}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.691709}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "C3444T", "C4683T", "T11049G", "T11632A", "G11634T", "C15738T", "C27610T"]}}}, {"name": "NODE_0000434", "node_attrs": {"div": 21, "num_date": {"value": 2020.7552188520478, "confidence": [2020.5808916088872, 2020.8677740471173]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000844", "node_attrs": {"div": 22, "num_date": {"value": 2020.8179609593649, "confidence": [2020.627289079556, 2020.8713150157494]}}, "branch_attrs": {"mutations": {"nuc": ["C21638T"], "S": ["P26S"]}, "labels": {"aa": "S: P26S"}}, "children": [{"name": "USA/CA-CDPH-2000001483/2020", "node_attrs": {"div": 28, "num_date": {"value": 2020.9166666666667, "confidence": [2020.9166666666667, 2020.9166666666667]}, "tsne_y": {"value": -8.03662107796408}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.87661289355308}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.900791959272212}, "tsne_x": {"value": -1.561509987617922}, "mds3": {"value": 2.352819383676444}, "umap_x": {"value": 8.623999}, "pca2": {"value": -0.1991686507925268}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -23.98876569327728}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.730336}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1342T", "T7813C", "A10417G", "T10732C", "A19476G", "G22708T"]}}}, {"name": "TWN/CGMH-CGU-49/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.0561643835617, "confidence": [2021.0561643835617, 2021.0561643835617]}, "tsne_y": {"value": -8.0380701484114}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Taiwan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.00371632723495}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.0263478177863}, "tsne_x": {"value": -1.564030414738394}, "mds3": {"value": 0.8352314683580635}, "umap_x": {"value": 8.498004}, "pca2": {"value": -19.003167475328645}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -23.06818241565282}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.973731}, "country": {"value": "Taiwan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C15324T", "C18981G", "C25603T", "C25710T"]}}}]}, {"name": "NODE_0000436", "node_attrs": {"div": 21, "num_date": {"value": 2020.8184125768385, "confidence": [2020.5743438995908, 2020.8749724207782]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-STM-000011263/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1082191780822, "confidence": [2021.1082191780822, 2021.1082191780822]}, "tsne_y": {"value": -8.0346687139045}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -28.154855142974814}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 55.118574056371095}, "tsne_x": {"value": -1.5592575277844152}, "mds3": {"value": -2.042443994344813}, "umap_x": {"value": 8.59816}, "pca2": {"value": 17.12254142675536}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -20.493560480254327}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.74497}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C835T", "G2086T", "C8683T", "C14898T", "G24050T", "A24190G", "A29497G"], "S": ["D830Y"]}, "labels": {"aa": "S: D830Y"}}}, {"name": "USA/CA-CDC-QDX21497095/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.0753424657535, "confidence": [2021.0753424657535, 2021.0753424657535]}, "tsne_y": {"value": -8.037167756119203}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.429"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.33437048112806}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 7.455814955769644}, "tsne_x": {"value": -1.5606433378071471}, "mds3": {"value": -1.8889966584401603}, "umap_x": {"value": 8.595343}, "pca2": {"value": 1.4830789846903758}, "Nextstrain_clade": {"value": "21C (Epsilon)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.2176391569126261}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.782288}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "G12514A", "C18377T", "G19419A", "A25856G", "G27703T", "A29552G"]}}}]}]}]}]}]}]}, {"name": "NODE_0000437", "node_attrs": {"div": 7, "num_date": {"value": 2020.357530805315, "confidence": [2020.2839682009917, 2020.407521051451]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000439", "node_attrs": {"div": 7, "num_date": {"value": 2020.3672138071188, "confidence": [2020.2907829507064, 2020.418389969466]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2007202084/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_y": {"value": -9.868147748360464}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.230563427452786}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.4738245901654823}, "tsne_x": {"value": -4.725502039939103}, "mds3": {"value": 4.163221629256967}, "umap_x": {"value": 7.592372}, "pca2": {"value": -0.1557071680011023}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.087559801279196}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.978434}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C2509T", "C6408T", "C13072T", "G21123T", "A26161-"]}}}, {"name": "IRQ/USAFSAM-S068/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.457650273224, "confidence": [2020.457650273224, 2020.457650273224]}, "tsne_y": {"value": -10.032565768044943}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Iraq"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.060419934970098}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.972933877052849}, "tsne_x": {"value": -4.864483024716172}, "mds3": {"value": 3.4177154068770594}, "umap_x": {"value": 7.6132374}, "pca2": {"value": -5.87208681711045}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.68326978982272}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.410501}, "country": {"value": "Iraq"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C1302T", "C10440T", "C10834T", "C23127T"], "S": ["A522V"]}, "labels": {"aa": "S: A522V"}}}]}, {"name": "NODE_0000440", "node_attrs": {"div": 7, "num_date": {"value": 2020.3804367574985, "confidence": [2020.2618219758422, 2020.5078809460733]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000839", "node_attrs": {"div": 10, "num_date": {"value": 2020.5117704929178, "confidence": [2020.3982471865008, 2020.580632395684]}}, "branch_attrs": {"mutations": {"nuc": ["A12820G", "C16762T", "C20762T"]}}, "children": [{"name": "Japan/Donner284/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_y": {"value": -11.09732346680728}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.346"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.22104325842723}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.914062275635793}, "tsne_x": {"value": -4.443399464301965}, "mds3": {"value": 4.961066736123983}, "umap_x": {"value": 7.64736}, "pca2": {"value": -0.2736950139903089}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.561560874560316}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.341531}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A6948C", "G14587T", "C15324T", "T15403C", "A17637G", "A17880G", "C24337T", "C26735T"]}}}, {"name": "USA/NM-UNM-TC222456/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.6188524590164, "confidence": [2020.6188524590164, 2020.6188524590164]}, "tsne_y": {"value": -10.690325862650267}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.346"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.168493134873668}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.141155972060967}, "tsne_x": {"value": -4.571466813830812}, "mds3": {"value": 2.39763134920598}, "umap_x": {"value": 7.5552464}, "pca2": {"value": 13.392097087282297}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.963455112920903}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.51897}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3308A", "A6393G", "G18318T"]}}}]}, {"name": "NODE_0000444", "node_attrs": {"div": 7, "num_date": {"value": 2020.426367085855, "confidence": [2020.2599066387104, 2020.7254472723994]}}, "branch_attrs": {"mutations": {"nuc": ["A28271-"]}}, "children": [{"name": "NODE_0000445", "node_attrs": {"div": 7, "num_date": {"value": 2020.4625252914286, "confidence": [2020.2678405439824, 2020.7366800167692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NC-CDC-STM-000034080/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.1931506849314, "confidence": [2021.1931506849314, 2021.1931506849314]}, "tsne_y": {"value": -9.13436256941}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.575"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "North Carolina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.164196674611239}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.890896793396218}, "tsne_x": {"value": -7.018689173843116}, "mds3": {"value": 2.082318072926676}, "umap_x": {"value": 8.271755}, "pca2": {"value": -7.482333176249349}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -25.61232237889408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.512852}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1180G", "C3961A", "C10029T", "C11514T", "C11704T", "C16375T", "C20404T", "T20748C", "T23042C", "C23604A", "C23709T", "C24374T", "T26767C", "C27513T", "C28093T", "G29711-", "C29719T"], "S": ["S494P", "P681H", "T716I", "L938F"]}, "labels": {"aa": "S: S494P, P681H, T716I, L938F"}}}, {"name": "USA/CA-CHLA-PLM72377620/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.872950819672, "confidence": [2020.872950819672, 2020.872950819672]}, "tsne_y": {"value": -10.623665955796202}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.38371204952504}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.128674713957055}, "tsne_x": {"value": -5.004575334149551}, "mds3": {"value": 9.35385639477683}, "umap_x": {"value": 7.501338}, "pca2": {"value": -19.20702773359244}, "Nextstrain_clade": {"value": "20C"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -12.5606917818462}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.658964}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "C4891T", "C12025T", "C13860T", "G16014T", "C16949T", "C21658T", "T22152C", "T22843C", "T28255C", "-28271A"], "S": ["I197T"]}, "labels": {"aa": "S: I197T"}}}]}, {"name": "NODE_0000849", "node_attrs": {"div": 11, "num_date": {"value": 2020.627596633964, "confidence": [2020.3609133404093, 2020.873438906415]}}, "branch_attrs": {"mutations": {"nuc": ["T9867C", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "C25517T", "C27925T", "G28975A"]}}, "children": [{"name": "NODE_0000850", "node_attrs": {"div": 28, "num_date": {"value": 2021.1319952935783, "confidence": [2020.981404441246, 2021.24537040915]}}, "branch_attrs": {"mutations": {"nuc": ["G5300T", "C5581T", "A9749G", "C9891T", "G11804A", "T12628C", "A13533G", "A21801G", "T21992-", "A21993-", "T21994-", "T22032C", "T22917G", "C24138A", "G24410C", "C25413T", "C25702T", "C25703T", "G28044T", "C28333T"], "S": ["D80G", "Y144-", "F157S", "L452R", "T859N", "D950H"]}, "labels": {"aa": "S: D80G, Y144-, F157S, L452R, T859N, D950H"}}, "children": [{"name": "USA/CA-CDC-QDX23916481/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_y": {"value": -11.828918241994243}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.637"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.2779515704631}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.6427114125739735}, "tsne_x": {"value": -1.6188124058858122}, "mds3": {"value": 1.2003958474030998}, "umap_x": {"value": 8.779327}, "pca2": {"value": 0.0990695460948402}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -36.79014008204635}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.390696}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6312T", "T10879C", "C26464T", "A27691-", "T27692-", "T27693-", "T27694-", "C29741T"]}}}, {"name": "USA/CA-CDC-ASC210036937/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.327397260274, "confidence": [2021.327397260274, 2021.327397260274]}, "tsne_y": {"value": -11.830825230127752}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.637"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.208790667726223}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.578814649569819}, "tsne_x": {"value": -1.6128794691612358}, "mds3": {"value": 1.5392909092676508}, "umap_x": {"value": 8.776717}, "pca2": {"value": -15.499895077170754}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -38.67200361459506}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.366197}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A4485G", "T5749C", "A10657G", "T18623C", "C22664T", "C23929T", "C26601T"]}}}]}, {"name": "NODE_0000851", "node_attrs": {"div": 20, "num_date": {"value": 2021.106408498508, "confidence": [2020.9796432404971, 2021.1678056481026]}}, "branch_attrs": {"mutations": {"nuc": ["G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "A16500C", "A20262G", "C21575T", "C21846T", "A22320G", "G23012A", "C23664T", "C28869T", "T28887C"], "S": ["L5F", "T95I", "D253G", "E484K", "A701V"]}, "labels": {"aa": "S: L5F, T95I, D253G, E484K, A701V"}}, "children": [{"name": "USA/PA-CDC-STM-000048612/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.2452054794521, "confidence": [2021.2452054794521, 2021.2452054794521]}, "tsne_y": {"value": -10.61372614844048}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.526"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Pennsylvania"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.841223058038937}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.326125026666331}, "tsne_x": {"value": -1.8769949071554148}, "mds3": {"value": 7.136550529042074}, "umap_x": {"value": 8.340259}, "pca2": {"value": -6.927387877988656}, "Nextstrain_clade": {"value": "21F (Iota)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -26.345314538131284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.2982}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G509-", "T519-", "G520-", "G521-", "T522-", "T523-", "C9207T", "C13436T", "G25489T", "C26013T"]}}}, {"name": "NODE_0000449", "node_attrs": {"div": 20, "num_date": {"value": 2021.1297115434654, "confidence": [2020.996812530939, 2021.177895299394]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NJ-CDC-QDX23892797/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.2753424657535, "confidence": [2021.2753424657535, 2021.2753424657535]}, "tsne_y": {"value": -10.6147869759459}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.526"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Jersey"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.47251842865151}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -0.2074870320099537}, "tsne_x": {"value": -1.8894592037839988}, "mds3": {"value": 3.921546825071079}, "umap_x": {"value": 8.09805}, "pca2": {"value": 0.8758728907600657}, "Nextstrain_clade": {"value": "21F (Iota)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -21.895377627199057}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.880143}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["-510G", "-511T", "-512C", "-513A", "-514T", "-515G", "-516T", "-517T", "-518A", "T18471C", "A20598G"]}}}, {"name": "USA/NY-PRL-2021_0319_00L21/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_y": {"value": -10.614403042516988}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.526"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.68443332679712}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.884731206217047}, "tsne_x": {"value": -1.8839983179478696}, "mds3": {"value": 3.7475874124545214}, "umap_x": {"value": 8.168629}, "pca2": {"value": 9.832986858890694}, "Nextstrain_clade": {"value": "21F (Iota)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.107218196860015}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.462535}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1399G", "T13996C", "C21627T"], "S": ["T22I"]}, "labels": {"aa": "S: T22I"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000853", "node_attrs": {"div": 8, "num_date": {"value": 2020.3414549319189, "confidence": [2020.1953878837885, 2020.4712432169542]}}, "branch_attrs": {"mutations": {"nuc": ["G23012A"], "S": ["E484K"]}, "labels": {"aa": "S: E484K"}}, "children": [{"name": "NODE_0000854", "node_attrs": {"div": 12, "num_date": {"value": 2020.4932206372137, "confidence": [2020.3073495565643, 2020.6763093823124]}}, "branch_attrs": {"mutations": {"nuc": ["T1059C", "C18877T", "G24410A", "A28272G"], "S": ["D950N"]}, "labels": {"aa": "S: D950N"}}, "children": [{"name": "COL/SEC-0367C/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.217808219178, "confidence": [2021.217808219178, 2021.217808219178]}, "tsne_y": {"value": -11.549615678596933}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.625"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.42529338484432}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 0.8611388155620233}, "tsne_x": {"value": -6.719839312770902}, "mds3": {"value": -3.788464846858997}, "umap_x": {"value": 8.620329}, "pca2": {"value": 2.1237980621044805}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.7309370921361644}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.748022}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G521T", "C1385T", "C2306T", "A4220G", "C5730T", "C6401T", "A10323G", "C10775T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "T12730G", "A13712G", "C16694T", "G21255T", "C22033A", "T22324C", "T22882G", "G25244T", "T26767C", "A27721G", "A27897-", "A27898-", "A27899-", "T27900-", "T27901-", "T28887C", "G28975T"], "S": ["F157L", "N440K", "V1228L"]}, "labels": {"aa": "S: F157L, N440K, V1228L"}}}, {"name": "NODE_0000855", "node_attrs": {"div": 32, "num_date": {"value": 2021.132530607556, "confidence": [2021.0381278090797, 2021.2464058386445]}}, "branch_attrs": {"mutations": {"nuc": ["A3428G", "C4878T", "C6037T", "C10029T", "A11451G", "A13057T", "C17491T", "T19035C", "C20148T", "C21846T", "A21993C", "T21995A", "G22599A", "A23063T", "C23604A", "G26158-", "T26159-", "T26160-", "A26161-", "A26492T", "C27925A", "C28005T", "C28093T", "G28272T"], "S": ["T95I", "Y144S", "Y145N", "R346K", "N501Y", "P681H"]}, "labels": {"aa": "S: T95I, Y144S, Y145N, R346K, N501Y, P681H"}}, "children": [{"name": "COL/SEC-0446D/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.286301369863, "confidence": [2021.286301369863, 2021.286301369863]}, "tsne_y": {"value": -15.367630300226647}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.621"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.06887087455335}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 12.971198946139518}, "tsne_x": {"value": -2.9649532928698323}, "mds3": {"value": 9.121706471073704}, "umap_x": {"value": 8.81337}, "pca2": {"value": -2.9805883972342047}, "Nextstrain_clade": {"value": "21H (Mu)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -38.1930719979096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.505199}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A15002G", "G17019T", "T21765C", "C25452G", "C26907T"], "S": ["I68T"]}, "labels": {"aa": "S: I68T"}}}, {"name": "NODE_0000453", "node_attrs": {"div": 32, "num_date": {"value": 2021.1859320132407, "confidence": [2021.0393095256154, 2021.2384238867517]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Colombia/CO-ATL-UW21041376734/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2808219178082, "confidence": [2021.2808219178082, 2021.2808219178082]}, "tsne_y": {"value": -15.367711787847522}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.621"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.075486420115372}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.956216354342225}, "tsne_x": {"value": -2.964439232807866}, "mds3": {"value": 4.066535881461216}, "umap_x": {"value": 8.741398}, "pca2": {"value": 30.74276330078233}, "Nextstrain_clade": {"value": "21H (Mu)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -32.12872332666419}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.685328}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C17010T"]}}}, {"name": "NODE_0000454", "node_attrs": {"div": 32, "num_date": {"value": 2021.1977438137226, "confidence": [2021.0449775509524, 2021.248185764396]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Colombia/CO-ATL-UW21041684175/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2890410958903, "confidence": [2021.2890410958903, 2021.2890410958903]}, "tsne_y": {"value": -15.3688120187387}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.621"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.27263928065328}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.956732853861269}, "tsne_x": {"value": -2.96414824602432}, "mds3": {"value": -2.393774711182905}, "umap_x": {"value": 8.715192}, "pca2": {"value": 30.742644473297783}, "Nextstrain_clade": {"value": "21H (Mu)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 17.50182205825917}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.572055}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G4403A", "G15327T"]}}}, {"name": "NODE_0000456", "node_attrs": {"div": 32, "num_date": {"value": 2021.2115335024623, "confidence": [2021.0476024777865, 2021.2648337553644]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Colombia/CO-ATL-UW21072275714/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_y": {"value": -15.372275708536636}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.621"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -37.57961352487369}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.969875463317128}, "tsne_x": {"value": -2.963332265606986}, "mds3": {"value": -3.227975921032224}, "umap_x": {"value": 8.787631}, "pca2": {"value": 30.884726151446404}, "Nextstrain_clade": {"value": "21H (Mu)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 18.57177066650071}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.369685}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C7162T", "G17302T", "C21575T", "C22993A", "C25463T", "C25771T", "C28291T"], "S": ["L5F", "S477R"]}, "labels": {"aa": "S: L5F, S477R"}}}, {"name": "USA/FL-BPHL-13146/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_y": {"value": -15.372355267066238}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.621.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -20.63359797406095}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 50.6774180110902}, "tsne_x": {"value": -2.962510534721842}, "mds3": {"value": 8.295625805635297}, "umap_x": {"value": 8.75322}, "pca2": {"value": -3.812050186879976}, "Nextstrain_clade": {"value": "21H (Mu)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -44.12580289977831}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.320699}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A687G", "C5192T", "A6704G", "G7393A", "C9120T", "C17707T", "C20402T", "G26167T", "C27673T", "G27703-", "G28086T", "C28657T", "T29748C"]}}}]}]}]}]}]}, {"name": "NODE_0000859", "node_attrs": {"div": 18, "num_date": {"value": 2020.5888860297887, "confidence": [2020.496653635521, 2020.7435907316985]}}, "branch_attrs": {"mutations": {"nuc": ["G174T", "G5230T", "A10323G", "A21801C", "T22283-", "T22284-", "A22285-", "C22286-", "T22287-", "T22288-", "G22289-", "C22290-", "T22291-", "G22813T", "A23063T", "C23664T", "C25904T", "C26456T", "C28253T"], "S": ["D80A", "L241-", "L242-", "A243-", "K417N", "N501Y", "A701V"]}, "labels": {"aa": "S: D80A, L241-, L242-, A243-, K417N, N501Y, A701V"}}, "children": [{"name": "NODE_0000860", "node_attrs": {"div": 24, "num_date": {"value": 2020.759596696026, "confidence": [2020.6872136614234, 2020.855117368863]}}, "branch_attrs": {"mutations": {"nuc": ["C8660T", "C8964T", "G11230T", "C14925T", "G22299T", "T27504C"], "S": ["R246I"]}, "labels": {"aa": "S: R246I"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7035-KRISP/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_y": {"value": -10.700058292111729}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.79381605313149}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 2.492513755668847}, "tsne_x": {"value": 2.1095956346296902}, "mds3": {"value": 10.235527141909571}, "umap_x": {"value": 8.982915}, "pca2": {"value": -20.38672185707504}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -18.441118520396387}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.552375}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "C547T", "C16308T"]}}}, {"name": "NODE_0000861", "node_attrs": {"div": 25, "num_date": {"value": 2020.8168174589146, "confidence": [2020.7287659855665, 2020.8619354032055]}}, "branch_attrs": {"mutations": {"nuc": ["T29856C"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1378/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.8674863387978, "confidence": [2020.8674863387978, 2020.8674863387978]}, "tsne_y": {"value": -10.766501642733267}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -26.90990860951417}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 2.216197295094539}, "tsne_x": {"value": 2.2135222046779144}, "mds3": {"value": 8.909216988640365}, "umap_x": {"value": 8.883006}, "pca2": {"value": -21.46848426471045}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -11.01652709810402}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.313318}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GS-7001-KRISP/2020", "node_attrs": {"div": 30, "num_date": {"value": 2020.886612021858, "confidence": [2020.886612021858, 2020.886612021858]}, "tsne_y": {"value": -10.748295831207942}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -25.44398024150246}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 1.7257018557035793}, "tsne_x": {"value": 2.1295736420709392}, "mds3": {"value": 10.891723635422542}, "umap_x": {"value": 8.969784}, "pca2": {"value": -21.304596436158683}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -18.70065847704776}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.494975}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["A26G", "G28817T", "A29852T", "G29853T", "T29859A"]}}}]}]}, {"name": "NODE_0000862", "node_attrs": {"div": 19, "num_date": {"value": 2020.644099249508, "confidence": [2020.5606025996678, 2020.7591148008808]}}, "branch_attrs": {"mutations": {"nuc": ["T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "A22206G"], "S": ["D215G"]}, "labels": {"aa": "S: D215G"}}, "children": [{"name": "NODE_0000865", "node_attrs": {"div": 20, "num_date": {"value": 2020.7975203440633, "confidence": [2020.6008672624573, 2020.9306516886127]}}, "branch_attrs": {"mutations": {"nuc": ["A28254C"]}}, "children": [{"name": "NZL/21MV0438/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_y": {"value": -11.276747932616487}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.383821036855554}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.62365046618302}, "tsne_x": {"value": 2.703868275819149}, "mds3": {"value": 13.929356961386372}, "umap_x": {"value": 8.973032}, "pca2": {"value": -3.0210629047637}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -18.170937505437607}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.582465}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1263T", "A5794C", "A6484C", "C16887T", "C18695T", "C21638T", "T24796C"], "S": ["P26S"]}, "labels": {"aa": "S: P26S"}}}, {"name": "NODE_0000866", "node_attrs": {"div": 21, "num_date": {"value": 2020.8815548255434, "confidence": [2020.6949590545482, 2020.97131147541]}}, "branch_attrs": {"mutations": {"nuc": ["C17999T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8350/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_y": {"value": -11.078061243397949}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.145675052954}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 5.031352420555165}, "tsne_x": {"value": 2.7219043641741107}, "mds3": {"value": 11.307941773898891}, "umap_x": {"value": 8.854708}, "pca2": {"value": -14.759094393645595}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -11.090402037924331}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.25809}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C20233T", "G27008T"]}}}, {"name": "NODE_0000465", "node_attrs": {"div": 21, "num_date": {"value": 2020.8901221809201, "confidence": [2020.7044697201288, 2020.9920017016816]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0057/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.1027397260275, "confidence": [2021.1027397260275, 2021.1027397260275]}, "tsne_y": {"value": -11.55677933972101}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.49565561132176}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -5.365214145443084}, "tsne_x": {"value": 2.7583525642027067}, "mds3": {"value": 10.11905156336783}, "umap_x": {"value": 8.933991}, "pca2": {"value": 11.594535366101592}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -14.667149245560395}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.867841}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C19586T", "C19803T", "C21110T", "A23416T", "T23470C", "C24183T", "C25546T", "C27059T", "G27358T"], "S": ["T874I"]}, "labels": {"aa": "S: T874I"}}}, {"name": "NODE_0000466", "node_attrs": {"div": 21, "num_date": {"value": 2020.9711861910002, "confidence": [2020.6962902771695, 2021.1841338438235]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-C004/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_y": {"value": -11.580703963506524}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.36018053253835}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 6.226609014124384}, "tsne_x": {"value": 2.7644977196033595}, "mds3": {"value": 10.738996644240736}, "umap_x": {"value": 8.9249935}, "pca2": {"value": -8.579699891874986}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -13.01709063071643}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.89717}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "T2053A", "C3457T", "G3663T", "C6990T", "G7272A", "C8043T", "T17088G", "T19016C"]}}}, {"name": "NZL/21MV0224/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.231506849315, "confidence": [2021.231506849315, 2021.231506849315]}, "tsne_y": {"value": -11.1565104068838}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -25.824951989637768}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 63.09052433294128}, "tsne_x": {"value": 2.6749698859339213}, "mds3": {"value": 2.297470844269156}, "umap_x": {"value": 8.74449}, "pca2": {"value": -3.1128840156843443}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -5.798718185862111}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.346662}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4897T", "C5512T", "C6471T", "C18657T"]}}}]}]}]}]}, {"name": "NODE_0000467", "node_attrs": {"div": 19, "num_date": {"value": 2020.6749946455272, "confidence": [2020.5608223877907, 2020.7699112172015]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8703/2020", "node_attrs": {"div": 28, "num_date": {"value": 2020.974043715847, "confidence": [2020.974043715847, 2020.974043715847]}, "tsne_y": {"value": -11.436048391552196}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.396795030426027}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 6.035429921871266}, "tsne_x": {"value": 2.772686948585567}, "mds3": {"value": 9.760978538093116}, "umap_x": {"value": 8.991675}, "pca2": {"value": -9.176194322123813}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -12.59848800160037}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.6622305}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C936T", "C1263T", "C4754T", "G6533A", "A12603C", "A17553G", "A19361T", "C19884T", "-22283T", "-22284T", "-22285A", "-22286C", "-22287T", "-22288T", "-22289G", "-22290C", "-22291T", "G25567A"], "S": ["-241L", "-242L", "-243A"]}, "labels": {"aa": "S: -241L, -242L, -243A"}}}, {"name": "NODE_0000470", "node_attrs": {"div": 19, "num_date": {"value": 2020.6878953007838, "confidence": [2020.5658849755139, 2020.7826101899723]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000472", "node_attrs": {"div": 19, "num_date": {"value": 2020.797203887673, "confidence": [2020.5611155976496, 2020.9291638587886]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000473", "node_attrs": {"div": 19, "num_date": {"value": 2020.8345671466097, "confidence": [2020.6109727210774, 2020.9363423766065]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7972/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_y": {"value": -10.976773577609505}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.17873162723865}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 11.70493090623052}, "tsne_x": {"value": 2.6915550003234525}, "mds3": {"value": 7.253198271191029}, "umap_x": {"value": 8.707314}, "pca2": {"value": -7.757800292485982}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -6.304942587980073}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.367113}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6802T", "C11173T", "C28201T", "G29140T"]}}}, {"name": "NODE_0000474", "node_attrs": {"div": 19, "num_date": {"value": 2020.9534278665672, "confidence": [2020.540073029854, 2020.957650273224]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7985/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.957650273224, "confidence": [2020.957650273224, 2020.957650273224]}, "tsne_y": {"value": -10.96241256550845}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.4438899429952}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.516774824689367}, "tsne_x": {"value": 2.731428020807911}, "mds3": {"value": 10.29917281462365}, "umap_x": {"value": 8.610087}, "pca2": {"value": -7.828180477578394}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -10.088564430390427}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.47485}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GS-C559/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.4534246575342, "confidence": [2021.4534246575342, 2021.4534246575342]}, "tsne_y": {"value": -11.538539575700048}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -32.83158693548112}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -4.034409763040544}, "tsne_x": {"value": 3.0492357901902185}, "mds3": {"value": 10.503041743374414}, "umap_x": {"value": 8.938073}, "pca2": {"value": 1.5860885149175692}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -17.470827134467722}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.860401}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "C9142T", "A13916G", "C15212T", "C17883T", "C18687T", "C19524T", "A20461G", "C21622T", "G24794T", "T27687C"], "S": ["A1078S"]}, "labels": {"aa": "S: A1078S"}}}]}]}, {"name": "NODE_0000871", "node_attrs": {"div": 21, "num_date": {"value": 2020.9536483268046, "confidence": [2020.6739750704137, 2021.130805402512]}}, "branch_attrs": {"mutations": {"nuc": ["C11812A", "G21641T"], "S": ["A27S"]}, "labels": {"aa": "S: A27S"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B928/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.3958904109588, "confidence": [2021.3958904109588, 2021.3958904109588]}, "tsne_y": {"value": -11.08972430980928}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -30.73708397011463}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 11.940281726734964}, "tsne_x": {"value": 2.3112083061239184}, "mds3": {"value": 6.441003478262171}, "umap_x": {"value": 8.921892}, "pca2": {"value": -6.951984535393265}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -5.495137799496014}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.390643}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G167T", "T473C", "C18981T", "G23593T", "C26895T", "G27659T", "G28817T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}, {"name": "NODE_0000872", "node_attrs": {"div": 26, "num_date": {"value": 2021.1847881125034, "confidence": [2021.031298499095, 2021.2686330511424]}}, "branch_attrs": {"mutations": {"nuc": ["T4213C", "C15925T", "T17970C", "A23764T", "T28642C"]}}, "children": [{"name": "NZL/21MV0452/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.3821917808218, "confidence": [2021.3821917808218, 2021.3821917808218]}, "tsne_y": {"value": -11.250464391274658}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.089912512617307}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 8.242805561537967}, "tsne_x": {"value": 2.31291186546707}, "mds3": {"value": 12.45741475989962}, "umap_x": {"value": 9.013263}, "pca2": {"value": -3.081501040825228}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -18.592953079582603}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.604059}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C17474T"]}}}, {"name": "NODE_0000873", "node_attrs": {"div": 33, "num_date": {"value": 2021.327397260274, "confidence": [2021.299428636385, 2021.327397260274]}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "G2305T", "T5941G", "C13011T", "C17127T", "G24932T", "T25333C"], "S": ["G1124C"]}, "labels": {"aa": "S: G1124C"}}, "children": [{"name": "HongKong/HKPU-00181/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.327397260274, "confidence": [2021.327397260274, 2021.327397260274]}, "tsne_y": {"value": -11.462872172279448}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.65487305190893}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 11.19671953075091}, "tsne_x": {"value": 1.99026378105754}, "mds3": {"value": 11.025316936920245}, "umap_x": {"value": 8.865355}, "pca2": {"value": -2.2844376336469727}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -20.83875240024172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.033947}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "HongKong/HKPU-00182/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.327397260274, "confidence": [2021.327397260274, 2021.327397260274]}, "tsne_y": {"value": -11.46054697479516}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -35.80137373174756}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.668444566891453}, "tsne_x": {"value": 1.9882070668821616}, "mds3": {"value": 11.447464061555252}, "umap_x": {"value": 8.86691}, "pca2": {"value": -0.0203267375821371}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -19.82276365277876}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.024909}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000875", "node_attrs": {"div": 20, "num_date": {"value": 2020.710668624484, "confidence": [2020.6107640309795, 2020.788770679232]}}, "branch_attrs": {"mutations": {"nuc": ["A2692T"]}}, "children": [{"name": "NODE_0000479", "node_attrs": {"div": 20, "num_date": {"value": 2020.7547191865208, "confidence": [2020.5752365764477, 2020.94653613274]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000879", "node_attrs": {"div": 21, "num_date": {"value": 2020.8200296045982, "confidence": [2020.6225852914974, 2020.9599719435096]}}, "branch_attrs": {"mutations": {"nuc": ["T27193C"]}}, "children": [{"name": "OU096878", "node_attrs": {"div": 23, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_y": {"value": -10.892149382249489}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Bavaria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -23.39654445504659}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 31.523339539706736}, "tsne_x": {"value": 2.8051304782752737}, "mds3": {"value": 11.514122014010848}, "umap_x": {"value": 8.863303}, "pca2": {"value": -11.820554099861203}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -13.947616371008596}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.279413}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C9344T", "C17876T", "-22290C", "-22291T"], "S": ["-243X", "*1274X"]}, "labels": {"aa": "S: -243X, *1274X"}}}, {"name": "NODE_0000880", "node_attrs": {"div": 23, "num_date": {"value": 2020.8810951291937, "confidence": [2020.7020520835724, 2020.9825127378128]}}, "branch_attrs": {"mutations": {"nuc": ["G29027T", "G29706T"]}}, "children": [{"name": "NZL/21MV0282/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.2561643835616, "confidence": [2021.2561643835616, 2021.2561643835616]}, "tsne_y": {"value": -10.172963329150148}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -33.9013198899992}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.262985954257855}, "tsne_x": {"value": 2.7047923314347053}, "mds3": {"value": 12.346938627236105}, "umap_x": {"value": 8.889307}, "pca2": {"value": -3.0609835232864064}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -19.277563281510467}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.945362}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T224C", "T907C", "C4234T", "G4622A", "G8578T", "A9689G", "C16080T", "C25521T", "C25916T"]}}}, {"name": "South_Africa/UW21010444136/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_y": {"value": -10.426962729489132}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.71104936683362}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -7.735852446676298}, "tsne_x": {"value": 2.704751819370037}, "mds3": {"value": 9.90858590480115}, "umap_x": {"value": 8.995566}, "pca2": {"value": 30.61592671820037}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -16.90075353074684}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.679512}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["G370T", "A2134G", "G4399T", "C21145T", "C23987T", "G27987T"], "S": ["P809S"]}, "labels": {"aa": "S: P809S"}}}]}]}, {"name": "NODE_0000482", "node_attrs": {"div": 20, "num_date": {"value": 2020.8203067444783, "confidence": [2020.5657383588255, 2020.9652554278973]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "South_Africa/UW21020557085/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0972602739726, "confidence": [2021.0972602739726, 2021.0972602739726]}, "tsne_y": {"value": -10.901195558505488}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.8114199525763}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -7.70525794395263}, "tsne_x": {"value": 2.814258483035138}, "mds3": {"value": 9.723917272637175}, "umap_x": {"value": 8.826827}, "pca2": {"value": 30.56404534185776}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -14.90478035404861}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.263762}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C5100T", "C10456T", "C13620T", "C19524T", "G25352T"], "S": ["V1264L"]}, "labels": {"aa": "S: V1264L"}}}, {"name": "NODE_0000483", "node_attrs": {"div": 20, "num_date": {"value": 2020.8836841234368, "confidence": [2020.5638576654753, 2020.9858726892671]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B251/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_y": {"value": -10.874995359564354}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -28.540575288374168}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 10.11393832067381}, "tsne_x": {"value": 2.836380719059362}, "mds3": {"value": 5.6178496047076365}, "umap_x": {"value": 8.818916}, "pca2": {"value": -14.077043468744137}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -6.742370544265918}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.271516}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C11195T", "G15543T", "C20759T", "G28086T", "G29140T", "C29421T"]}}}, {"name": "BGD/ideSHi-IR-238/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.2835616438356, "confidence": [2021.2835616438356, 2021.2835616438356]}, "tsne_y": {"value": -10.636470137629134}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Dhaka"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -27.083408908145408}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 44.510678937605874}, "tsne_x": {"value": 2.653269517231853}, "mds3": {"value": 8.557343000380941}, "umap_x": {"value": 8.927225}, "pca2": {"value": -5.020976421023192}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -15.538270484148612}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.383079}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C8344T", "C10543T", "C13605T", "C16762T", "G21468T", "C21636T", "T25557C", "C28201T"], "S": ["P25L"]}, "labels": {"aa": "S: P25L"}}}]}]}]}, {"name": "NODE_0000881", "node_attrs": {"div": 21, "num_date": {"value": 2020.7335670425016, "confidence": [2020.637761232719, 2020.7943711840485]}}, "branch_attrs": {"mutations": {"nuc": ["C21614T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}, "children": [{"name": "NODE_0000895", "node_attrs": {"div": 22, "num_date": {"value": 2020.7541390323022, "confidence": [2020.662975430522, 2020.7995576756396]}}, "branch_attrs": {"mutations": {"nuc": ["C26645T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1025/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_y": {"value": -10.865546336833804}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.014347246928207}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 4.1940691560249785}, "tsne_x": {"value": 2.971569422516585}, "mds3": {"value": 14.213480465840194}, "umap_x": {"value": 8.950094}, "pca2": {"value": -16.76041972494619}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -12.125479699129256}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.420792}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["T28253C", "A28254T", "T28255C", "C28256T", "T28257A"]}}}, {"name": "NODE_0000554", "node_attrs": {"div": 22, "num_date": {"value": 2020.777538642669, "confidence": [2020.6631352613, 2020.8078263897048]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-1049/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.8237704918033, "confidence": [2020.8237704918033, 2020.8237704918033]}, "tsne_y": {"value": -10.878983742989746}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.13620792889648}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 5.266351196877434}, "tsne_x": {"value": 2.887488189391556}, "mds3": {"value": 12.040051671533892}, "umap_x": {"value": 8.898898}, "pca2": {"value": -10.634436622039152}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -12.66234662998945}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.318587}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["G1463T", "C25844T"]}}}, {"name": "NODE_0000489", "node_attrs": {"div": 22, "num_date": {"value": 2020.8096770091004, "confidence": [2020.634112111796, 2020.8709610976125]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000491", "node_attrs": {"div": 22, "num_date": {"value": 2020.8935861350412, "confidence": [2020.752970360105, 2020.9877049180327]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MWI/MLW001073/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.031506849315, "confidence": [2021.031506849315, 2021.031506849315]}, "tsne_y": {"value": -10.90590019397933}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Malawi"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.582604746524414}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 4.011732024598765}, "tsne_x": {"value": 2.811172760754807}, "mds3": {"value": 9.927904647922484}, "umap_x": {"value": 8.737698}, "pca2": {"value": 13.917578409793578}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -10.653451298602118}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.3619375}, "country": {"value": "Malawi"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GS-9212/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.9877049180327, "confidence": [2020.9877049180327, 2020.9877049180327]}, "tsne_y": {"value": -10.87515297745171}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.46646752251157}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 4.088095030731086}, "tsne_x": {"value": 2.896913005996616}, "mds3": {"value": 11.85895197590849}, "umap_x": {"value": 8.86123}, "pca2": {"value": -17.002039906105768}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -11.05300246352324}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.299089}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["-22283T", "-22284T", "-22285A", "-22286C", "-22287T", "-22288T", "-22289G", "-22290C", "-22291T", "A25985G", "G28109T"], "S": ["-241L", "-242L", "-243A"]}, "labels": {"aa": "S: -241L, -242L, -243A"}}}]}, {"name": "NODE_0000899", "node_attrs": {"div": 24, "num_date": {"value": 2020.8864477765608, "confidence": [2020.7987667345421, 2020.916329883461]}}, "branch_attrs": {"mutations": {"nuc": ["C1593T", "C14937T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7406/2020", "node_attrs": {"div": 26, "num_date": {"value": 2020.922131147541, "confidence": [2020.922131147541, 2020.922131147541]}, "tsne_y": {"value": -10.852688828608883}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -28.07170468323628}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 6.544450565304689}, "tsne_x": {"value": 2.903455019965985}, "mds3": {"value": 12.155857925020191}, "umap_x": {"value": 8.957973}, "pca2": {"value": -7.831834359318202}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -12.949863833254904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.464807}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["T26876C", "C27493T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-7913/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_y": {"value": -10.868841699801536}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.035032421915183}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 11.50007674079562}, "tsne_x": {"value": 2.885463539053322}, "mds3": {"value": 7.339965407318839}, "umap_x": {"value": 8.766979}, "pca2": {"value": -7.654824082239755}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -7.3379561628644145}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.3119545}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000561", "node_attrs": {"div": 21, "num_date": {"value": 2020.7582148496153, "confidence": [2020.6160141406815, 2020.8674151640143]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000904", "node_attrs": {"div": 22, "num_date": {"value": 2020.8222148250463, "confidence": [2020.6877467397437, 2020.89402420696]}}, "branch_attrs": {"mutations": {"nuc": ["C26985T"]}}, "children": [{"name": "NODE_0000905", "node_attrs": {"div": 25, "num_date": {"value": 2021.0150684931507, "confidence": [2020.9628904082272, 2021.0150684931507]}}, "branch_attrs": {"mutations": {"nuc": ["G4975T", "A11462G", "G28300T"]}}, "children": [{"name": "MYS/NCOV25225/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.2260273972602, "confidence": [2021.2260273972602, 2021.2260273972602]}, "tsne_y": {"value": -10.813433730960382}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Malaysia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.1867933876448}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 8.265049146798802}, "tsne_x": {"value": 2.9439220887483923}, "mds3": {"value": 12.472951224542618}, "umap_x": {"value": 8.980185}, "pca2": {"value": -3.076945497819209}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -13.368557850214078}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.578881}, "country": {"value": "Malaysia"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["A10353G", "G25606T"]}}}, {"name": "NZL/21CV0064/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0150684931507, "confidence": [2021.0150684931507, 2021.0150684931507]}, "tsne_y": {"value": -10.855819731756588}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.22238744005206}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 8.267073959517903}, "tsne_x": {"value": 2.905994093837494}, "mds3": {"value": 12.474657229642258}, "umap_x": {"value": 8.882777}, "pca2": {"value": -3.0798347888688022}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -14.108392582324448}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.33325}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000906", "node_attrs": {"div": 25, "num_date": {"value": 2020.9166666666667, "confidence": [2020.8828790717532, 2020.9166666666667]}}, "branch_attrs": {"mutations": {"nuc": ["G20931T", "G29751T", "G29810T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-7419/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.9303278688524, "confidence": [2020.9303278688524, 2020.9303278688524]}, "tsne_y": {"value": -10.860623651222625}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.08029716393977}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 4.916590299116845}, "tsne_x": {"value": 2.899117865288105}, "mds3": {"value": 12.261358260573065}, "umap_x": {"value": 8.9501295}, "pca2": {"value": -14.538196854157292}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -12.7375150874032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.331987}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GS-7166/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.9166666666667, "confidence": [2020.9166666666667, 2020.9166666666667]}, "tsne_y": {"value": -10.854192661863546}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.83195122532189}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 6.699432250863791}, "tsne_x": {"value": 2.897561246862059}, "mds3": {"value": 12.461169801577784}, "umap_x": {"value": 8.8933735}, "pca2": {"value": -6.094222098497021}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -13.91616682356425}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.321276}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000493", "node_attrs": {"div": 21, "num_date": {"value": 2020.8059607860964, "confidence": [2020.574836389141, 2020.958072396694]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000901", "node_attrs": {"div": 22, "num_date": {"value": 2020.8809216566126, "confidence": [2020.6649434163403, 2020.974043715847]}}, "branch_attrs": {"mutations": {"nuc": ["G25784T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8738/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.974043715847, "confidence": [2020.974043715847, 2020.974043715847]}, "tsne_y": {"value": -10.913704467302544}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.07277910059912}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 6.695378018554965}, "tsne_x": {"value": 2.8601566860820857}, "mds3": {"value": 11.877042740710202}, "umap_x": {"value": 8.841723}, "pca2": {"value": -6.257079049149416}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -10.939587772533011}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.329588}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["A28254C"]}}}, {"name": "NODE_0000902", "node_attrs": {"div": 23, "num_date": {"value": 2020.8975061116469, "confidence": [2020.7214468669004, 2021.0136848731083]}}, "branch_attrs": {"mutations": {"nuc": ["T14408A"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B916/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.3958904109588, "confidence": [2021.3958904109588, 2021.3958904109588]}, "tsne_y": {"value": -10.836722957327392}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -36.83526348293865}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.621634968690239}, "tsne_x": {"value": 3.5804144260942627}, "mds3": {"value": 13.144776281322043}, "umap_x": {"value": 8.868933}, "pca2": {"value": -7.789225222067069}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -15.201860144876056}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.003925}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1358A", "C1684T", "C8645T", "C13944T", "T16635C", "C17004T", "G18712A", "G21974T", "C25635T", "G28392A"], "S": ["D138Y"]}, "labels": {"aa": "S: D138Y"}}}, {"name": "NODE_0000903", "node_attrs": {"div": 24, "num_date": {"value": 2020.9697185083028, "confidence": [2020.7616508565036, 2021.021831715974]}}, "branch_attrs": {"mutations": {"nuc": ["G26152T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-A372/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.0534246575342, "confidence": [2021.0534246575342, 2021.0534246575342]}, "tsne_y": {"value": -10.81291184357689}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.51253552429096}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 4.960105617114254}, "tsne_x": {"value": 3.2537584465314167}, "mds3": {"value": 12.675028654579783}, "umap_x": {"value": 8.975973}, "pca2": {"value": -14.761249569447491}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -14.932183426480742}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.764349}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["A2206G", "G7736A", "C21575T", "C25635T", "C27881T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-B530/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.2698630136986, "confidence": [2021.2698630136986, 2021.2698630136986]}, "tsne_y": {"value": -10.80724018321868}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.54161528787204}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 4.425526606362337}, "tsne_x": {"value": 3.3476673133188646}, "mds3": {"value": 13.128846030405729}, "umap_x": {"value": 8.939012}, "pca2": {"value": -16.182663972465704}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -17.909397698875093}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.844218}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C865T", "A2653T", "T4579A", "C12890T", "C17649T", "C29585T"]}}}]}]}]}, {"name": "NODE_0000497", "node_attrs": {"div": 21, "num_date": {"value": 2020.8268796064185, "confidence": [2020.57832645639, 2020.9693002082856]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000889", "node_attrs": {"div": 22, "num_date": {"value": 2020.895712217291, "confidence": [2020.7305680281358, 2021.0024022381326]}}, "branch_attrs": {"mutations": {"nuc": ["C28310T"]}}, "children": [{"name": "NODE_0000891", "node_attrs": {"div": 23, "num_date": {"value": 2020.9700063622806, "confidence": [2020.8055994993686, 2021.0056123508382]}}, "branch_attrs": {"mutations": {"nuc": ["C4276T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-B832/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_y": {"value": -10.705668832855856}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -32.58940997918642}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 6.210401220954241}, "tsne_x": {"value": 3.2614588141150693}, "mds3": {"value": 12.921791978061288}, "umap_x": {"value": 8.942326}, "pca2": {"value": -8.713739255217329}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -15.266946526400153}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.838258}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C13426T", "G14055T", "G25690T", "G26951T", "C26954T", "C27002T", "G28899A"]}}}, {"name": "MWI/MLW00997/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.0150684931507, "confidence": [2021.0150684931507, 2021.0150684931507]}, "tsne_y": {"value": -10.848865790136424}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Malawi"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.244932012826727}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -3.2028641310674666}, "tsne_x": {"value": 2.9107142566517705}, "mds3": {"value": 12.6364224067295}, "umap_x": {"value": 8.948218}, "pca2": {"value": 12.315754292902913}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -13.158077696808038}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.443145}, "country": {"value": "Malawi"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["G3216T", "G23593T", "G24000A"], "S": ["Q677H", "S813N"]}, "labels": {"aa": "S: Q677H, S813N"}}}]}, {"name": "NODE_0000500", "node_attrs": {"div": 22, "num_date": {"value": 2021.0687567829577, "confidence": [2020.905483577577, 2021.1798278593126]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU125853", "node_attrs": {"div": 24, "num_date": {"value": 2021.2205479452055, "confidence": [2021.2205479452055, 2021.2205479452055]}, "tsne_y": {"value": -10.875721202198925}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Germany"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.11144530253651}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 4.349963423752721}, "tsne_x": {"value": 2.892987794235155}, "mds3": {"value": 11.96805735614912}, "umap_x": {"value": 8.891083}, "pca2": {"value": -13.240758008673176}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -11.877105715758896}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.292931}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C19488T", "C25672T"]}}}, {"name": "NODE_0000892", "node_attrs": {"div": 23, "num_date": {"value": 2021.1437045087055, "confidence": [2021.0618421255845, 2021.221678404228]}}, "branch_attrs": {"mutations": {"nuc": ["G25483T"]}}, "children": [{"name": "KEN/C89325/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.2397260273972, "confidence": [2021.2397260273972, 2021.2397260273972]}, "tsne_y": {"value": -10.845690685844906}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.70610729009012}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 0.1812584745521844}, "tsne_x": {"value": 2.925571756046445}, "mds3": {"value": 12.697049933070986}, "umap_x": {"value": 8.953606}, "pca2": {"value": 1.1629912544087009}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -15.377817447057284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.43259}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["T3124C", "T19215C", "C20823T"]}}}, {"name": "NODE_0000504", "node_attrs": {"div": 23, "num_date": {"value": 2021.2094922751035, "confidence": [2021.069960481663, 2021.2643835616439]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS7150/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.2643835616439, "confidence": [2021.2643835616439, 2021.2643835616439]}, "tsne_y": {"value": -10.88006327828922}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.410383199808344}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 0.3373443456942274}, "tsne_x": {"value": 2.87469440100233}, "mds3": {"value": 10.100545283899178}, "umap_x": {"value": 8.819894}, "pca2": {"value": 3.788838309074492}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -12.285475974115617}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.305887}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {}}}, {"name": "KEN/C94719/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.335616438356, "confidence": [2021.335616438356, 2021.335616438356]}, "tsne_y": {"value": -10.806323464227932}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.529535839553468}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -3.528206437369302}, "tsne_x": {"value": 2.972359103276353}, "mds3": {"value": 13.15260598913995}, "umap_x": {"value": 8.918768}, "pca2": {"value": 1.5755465143168823}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -10.818054653994652}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.334175}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C3241T", "C11001T", "G13849A", "C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}]}]}]}, {"name": "NODE_0000505", "node_attrs": {"div": 21, "num_date": {"value": 2020.8782763121778, "confidence": [2020.5777652958175, 2020.970359890766]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-8742/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.9795081967213, "confidence": [2020.9795081967213, 2020.9795081967213]}, "tsne_y": {"value": -10.879513566739796}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -21.88695337582747}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 23.95093968049949}, "tsne_x": {"value": 2.8610280565904507}, "mds3": {"value": 6.879966000950017}, "umap_x": {"value": 8.69785}, "pca2": {"value": -11.384679402842076}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -8.692378422562138}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.408288}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C9430T", "-22283T", "-22284T", "-22285A", "-22286C", "-22287T", "-22288T", "-22289G", "-22290C", "-22291T", "A23012G", "T23063A"], "S": ["-241L", "-242L", "-243A", "K484E", "Y501N"]}, "labels": {"aa": "S: -241L, -242L, -243A, K484E, Y501N"}}}, {"name": "NODE_0000506", "node_attrs": {"div": 21, "num_date": {"value": 2020.8934875469095, "confidence": [2020.591172769583, 2021.018749161398]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SYC/G40372/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1109589041096, "confidence": [2021.1109589041096, 2021.1109589041096]}, "tsne_y": {"value": -10.787072143658374}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Seychelles"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -30.601923956174414}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 15.697571671625235}, "tsne_x": {"value": 3.027966631900707}, "mds3": {"value": 11.973673580585093}, "umap_x": {"value": 8.977776}, "pca2": {"value": -0.514599448900043}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -13.707096521171872}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.639831}, "country": {"value": "Seychelles"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["T2218C", "C3927T", "G10310A", "C15714T", "T18411C", "G18756A", "C20936T"]}}}, {"name": "NODE_0000508", "node_attrs": {"div": 21, "num_date": {"value": 2020.9695739017193, "confidence": [2020.5081530233551, 2021.1214217051572]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000882", "node_attrs": {"div": 24, "num_date": {"value": 2021.1325407557672, "confidence": [2020.9802516243594, 2021.200722207179]}}, "branch_attrs": {"mutations": {"nuc": ["C20178T", "C26882T", "C29762T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-C998/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.478082191781, "confidence": [2021.478082191781, 2021.478082191781]}, "tsne_y": {"value": -10.420779258149084}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -30.39797868130372}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.636119265834111}, "tsne_x": {"value": 3.2444980610524885}, "mds3": {"value": 12.65246523679548}, "umap_x": {"value": 8.92069}, "pca2": {"value": -18.745006498969147}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -22.622529819782923}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.865056}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A16076G", "C17134T", "G19788T", "T21992-", "A21993-", "T21994-", "C22323T", "C23039A", "C24642T", "A28271C"], "S": ["Y144-", "S254F", "Q493K", "T1027I"]}, "labels": {"aa": "S: Y144-, S254F, Q493K, T1027I"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-B335/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.2013698630137, "confidence": [2021.2013698630137, 2021.2013698630137]}, "tsne_y": {"value": -10.791650540194516}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.27304468206719}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 19.73175833190292}, "tsne_x": {"value": 2.952788321926514}, "mds3": {"value": 6.948577095014809}, "umap_x": {"value": 8.807764}, "pca2": {"value": -5.522639412765909}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -8.166207384920073}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.263244}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G28221T", "G28378T"]}}}]}, {"name": "NODE_0000511", "node_attrs": {"div": 21, "num_date": {"value": 2021.0057019577034, "confidence": [2020.5130616291985, 2021.129510367218]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ZAF/NHLS-UCT-GS-CD73/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.2260273972602, "confidence": [2021.2260273972602, 2021.2260273972602]}, "tsne_y": {"value": -10.80410987834114}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.56184382750723}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": -3.9798246015538745}, "tsne_x": {"value": 2.959213573776507}, "mds3": {"value": 7.902132593908976}, "umap_x": {"value": 8.982643}, "pca2": {"value": 1.4923345818583569}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -15.346039640290142}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.563931}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["G3638T", "G13348T", "G25593T", "G26828T", "C29245A", "G29402T"]}}}, {"name": "NODE_0000512", "node_attrs": {"div": 21, "num_date": {"value": 2021.0526443102337, "confidence": [2020.5120240942983, 2021.1332656299762]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/341933998/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.313698630137, "confidence": [2021.313698630137, 2021.313698630137]}, "tsne_y": {"value": -10.780352958391568}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.351.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.017221619773828}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 6.675565617489334}, "tsne_x": {"value": 3.065811085806708}, "mds3": {"value": 8.953062402423758}, "umap_x": {"value": 8.9661665}, "pca2": {"value": -8.081906834187347}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -13.89034268877428}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.660026}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C6402T", "T7624C", "A8052G", "G10396T", "C10615T", "A16687G", "C25603T"]}}}, {"name": "KEN/C88060/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.2205479452055, "confidence": [2021.2205479452055, 2021.2205479452055]}, "tsne_y": {"value": -10.866693003764686}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.351"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "5"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.351"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -27.69564437123288}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "5"}, "pca1": {"value": 29.30719687616112}, "tsne_x": {"value": 2.9032079812648046}, "mds3": {"value": 8.645410429372593}, "umap_x": {"value": 8.932286}, "pca2": {"value": 0.7110444460645924}, "Nextstrain_clade": {"value": "20H (Beta, V2)"}, "t-sne_label_for_Nextstrain_clade": {"value": "4"}, "mds2": {"value": -12.908233256479525}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 10.376058}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "5"}}, "branch_attrs": {"mutations": {"nuc": ["C9979T", "T15915C", "C18252T", "A18420G", "T23815C"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000513", "node_attrs": {"div": 4, "num_date": {"value": 2020.0430770173593, "confidence": [2019.9764952686485, 2020.0722238321398]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000514", "node_attrs": {"div": 4, "num_date": {"value": 2020.0499353553714, "confidence": [2019.9742199111201, 2020.138306189536]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000516", "node_attrs": {"div": 4, "num_date": {"value": 2020.0605040875744, "confidence": [2019.9809875369656, 2020.1425708601885]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000455", "node_attrs": {"div": 5, "num_date": {"value": 2020.159779217807, "confidence": [2020.0934191631884, 2020.214580447527]}}, "branch_attrs": {"mutations": {"nuc": ["G25429T"]}}, "children": [{"name": "NZL/20CV0543/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8483606557377, "confidence": [2020.8483606557377, 2020.8483606557377]}, "tsne_y": {"value": -10.167080745482922}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.558"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.881233260513586}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.3896300107973003}, "tsne_x": {"value": -9.167159660684458}, "mds3": {"value": 5.917077255746149}, "umap_x": {"value": 7.959172}, "pca2": {"value": 0.7105923791474172}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -19.248809357749565}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.193941}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1288T", "T3574C", "G3716T", "T9555C", "T11475C", "C17876T", "C21721T", "C22082T", "C23997T", "C25916T", "G25996A", "C28854T", "C29730T"], "S": ["P174S", "P812L"]}, "labels": {"aa": "S: P174S, P812L"}}}, {"name": "PER/covper089/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_y": {"value": -10.35586118752694}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.4050122851997675}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.799197449267146}, "tsne_x": {"value": -7.772504528280529}, "mds3": {"value": 1.6155738566686593}, "umap_x": {"value": 7.5153384}, "pca2": {"value": 30.950143920736537}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.7860611508591804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.697966}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C884T", "C5869T", "C29675-"]}}}]}, {"name": "NODE_0000520", "node_attrs": {"div": 4, "num_date": {"value": 2020.0775649097016, "confidence": [2019.9799128887414, 2020.146015454965]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000471", "node_attrs": {"div": 5, "num_date": {"value": 2020.1278553850696, "confidence": [2019.983693185512, 2020.171699565282]}}, "branch_attrs": {"mutations": {"nuc": ["C15324T"]}}, "children": [{"name": "NODE_0000475", "node_attrs": {"div": 8, "num_date": {"value": 2020.3638494421161, "confidence": [2020.1851031373421, 2020.5819055622046]}}, "branch_attrs": {"mutations": {"nuc": ["A4457G", "C5907T", "C12312T"]}}, "children": [{"name": "GAB/13593_Gabon/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_y": {"value": -12.731906586605009}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.214.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gabon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -20.94722153873936}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.309852391788016}, "tsne_x": {"value": -7.543513240293712}, "mds3": {"value": 0.5943585977233669}, "umap_x": {"value": 8.529053}, "pca2": {"value": 11.722209600806844}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 18.7645830624508}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.26927}, "country": {"value": "Gabon"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "C673T", "C4891T", "C7173T", "T11285-", "T11286-", "G11287-", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "A11430G", "A15187G", "C21846T", "C22995A", "C23709T", "T25391C", "T27576C", "A28271-", "A28272-", "G28280C", "A28281T", "T28282A", "C28846T", "C28887T"], "S": ["T95I", "T478K", "T716I"]}, "labels": {"aa": "S: T95I, T478K, T716I"}}}, {"name": "NZL/20CV0574/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.8784153005465, "confidence": [2020.8784153005465, 2020.8784153005465]}, "tsne_y": {"value": -9.63175317080618}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.022831721054464}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.844424629358115}, "tsne_x": {"value": -8.344577435458866}, "mds3": {"value": 5.223726058777474}, "umap_x": {"value": 8.175576}, "pca2": {"value": 0.0444826289303914}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -22.151533650066987}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.881523}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C414A", "C936T", "C6040T", "A8965G", "C12781T", "T14211C", "C23625T", "G24257T", "C27684T", "C28399T", "G28975T", "G29179T"], "S": ["A688V", "A899S"]}, "labels": {"aa": "S: A688V, A899S"}}}]}, {"name": "NODE_0000523", "node_attrs": {"div": 5, "num_date": {"value": 2020.1284981303147, "confidence": [2019.992458073149, 2020.1798467120407]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000524", "node_attrs": {"div": 5, "num_date": {"value": 2020.1379542323461, "confidence": [2019.993172925027, 2020.1791516366839]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1018/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -10.579790665156343}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.761922390843462}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 6.279817445698961}, "tsne_x": {"value": -7.753729124605737}, "mds3": {"value": 2.011137804386021}, "umap_x": {"value": 7.433107}, "pca2": {"value": -8.035699987165449}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.4612146202765848}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.968502}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G22918T", "G28690T"]}}}, {"name": "ISR/hCov-19-Israel-CVL-n3120/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.1871584699454, "confidence": [2020.1871584699454, 2020.1871584699454]}, "tsne_y": {"value": -10.179423134069676}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Israel"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.396362325577716}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.5981194274805293}, "tsne_x": {"value": -8.422552910344013}, "mds3": {"value": 3.3660087696506493}, "umap_x": {"value": 7.543604}, "pca2": {"value": 13.262199094070194}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.246237504071585}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.868187}, "country": {"value": "Israel"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C643T", "C3787T", "T8482C", "C11916T", "C17470T", "G26832T"]}}}]}, {"name": "NODE_0000526", "node_attrs": {"div": 5, "num_date": {"value": 2020.196597265474, "confidence": [2020.150011386341, 2020.200819672131]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Switzerland/GE-SNRCI-9268/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_y": {"value": -10.788303374439693}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Geneva"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.171757742560082}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -1.0080840167452685}, "tsne_x": {"value": -7.745407198498981}, "mds3": {"value": 2.05820382063985}, "umap_x": {"value": 7.623443}, "pca2": {"value": 6.584084711910249}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.4560430615538824}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.182405}, "country": {"value": "Switzerland"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "OU084001", "node_attrs": {"div": 24, "num_date": {"value": 2021.0780821917808, "confidence": [2021.0780821917808, 2021.0780821917808]}, "tsne_y": {"value": -9.705327660123343}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.221"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brandenburg"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.498145690524337}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.161849000340221}, "tsne_x": {"value": -8.945006244470358}, "mds3": {"value": 7.637910154833339}, "umap_x": {"value": 8.546193}, "pca2": {"value": 13.424320310542836}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -28.54017862801655}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.080046}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2106T", "C3602T", "C6941T", "T7942C", "G10805C", "C10808A", "C11575T", "C15720T", "A16044T", "G16528T", "C21855T", "G21901A", "C23086T", "A25505G", "G25906C", "G25996T", "T27220C", "C28651T", "C28869T"], "S": ["S98F"]}, "labels": {"aa": "S: S98F"}}}]}]}]}, {"name": "NODE_0000528", "node_attrs": {"div": 4, "num_date": {"value": 2020.127001414614, "confidence": [2020.00016133413, 2020.1525440285143]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000530", "node_attrs": {"div": 4, "num_date": {"value": 2020.1608611468355, "confidence": [2020.1065583503703, 2020.189168796605]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000531", "node_attrs": {"div": 4, "num_date": {"value": 2020.1862494138443, "confidence": [2020.145781442614, 2020.219819440841]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C3457/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_y": {"value": -10.629358365464602}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -1.8530863363609693}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 44.43746410647537}, "tsne_x": {"value": -7.830393080082794}, "mds3": {"value": 0.0966988810027525}, "umap_x": {"value": 7.595463}, "pca2": {"value": 13.974893172933172}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.0191325444134622}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.16906}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A9373G", "A9484C", "G17523T"]}}}, {"name": "NODE_0000532", "node_attrs": {"div": 4, "num_date": {"value": 2020.1973443396685, "confidence": [2020.164213494142, 2020.2417356033823]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC3/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.282786885246, "confidence": [2020.282786885246, 2020.282786885246]}, "tsne_y": {"value": -10.86350833217566}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gujarat"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.14346587282071}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.326658810545746}, "tsne_x": {"value": -7.615159331845418}, "mds3": {"value": 2.3368706005515145}, "umap_x": {"value": 7.4483624}, "pca2": {"value": -2.6680768928878646}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.500013154591652}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.144894}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C13994T", "A14041C"]}}}, {"name": "NODE_0000485", "node_attrs": {"div": 9, "num_date": {"value": 2020.326282710998, "confidence": [2020.2916946362463, 2020.3384777059277]}}, "branch_attrs": {"mutations": {"nuc": ["C5907T", "C15277T", "A21917G", "C25872T", "A26530G", "C29675-"], "S": ["I119V"]}, "labels": {"aa": "S: I119V"}}, "children": [{"name": "PER/covper023/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5068306010928, "confidence": [2020.5068306010928, 2020.5068306010928]}, "tsne_y": {"value": -8.77144000824214}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.6077575736042266}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.7728141125843395}, "tsne_x": {"value": -8.486462186627985}, "mds3": {"value": 1.5777620484699837}, "umap_x": {"value": 7.4979687}, "pca2": {"value": 30.95679508917103}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.265081306078309}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.140116}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G14268A", "C25317T"], "S": ["S1252F"]}, "labels": {"aa": "S: S1252F"}}}, {"name": "PER/covper035/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_y": {"value": -8.808161372964996}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.8717986933551958}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.77350453353615}, "tsne_x": {"value": -8.475342369049605}, "mds3": {"value": 0.0554408155299003}, "umap_x": {"value": 7.4915247}, "pca2": {"value": 30.95838629860216}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.4454653847283343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.41032}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A6592G"]}}}]}]}]}, {"name": "NODE_0000535", "node_attrs": {"div": 4, "num_date": {"value": 2020.1617127204686, "confidence": [2020.1261938500893, 2020.1956785822276]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC1017/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -10.987609857563436}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.1420552117954927}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 12.660968706633144}, "tsne_x": {"value": -7.52990100898434}, "mds3": {"value": 1.9440015890025344}, "umap_x": {"value": 7.535951}, "pca2": {"value": -4.593813029233783}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.7314654189287841}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.106972}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T7438C", "T24152C", "C29353T"]}}}, {"name": "NODE_0000536", "node_attrs": {"div": 4, "num_date": {"value": 2020.170023312676, "confidence": [2020.1482034331186, 2020.1994350220593]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV029491", "node_attrs": {"div": 7, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -10.592067595053743}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Madinah"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -2.166757999503408}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -0.97043508356192}, "tsne_x": {"value": -7.727792412486516}, "mds3": {"value": 1.6527514450668237}, "umap_x": {"value": 7.496618}, "pca2": {"value": -19.435337349748227}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.7106449334636611}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.15189}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C815T", "G11464T", "T28144C"]}}}, {"name": "NODE_0000537", "node_attrs": {"div": 4, "num_date": {"value": 2020.1840882327654, "confidence": [2020.164685221627, 2020.2003322662715]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CT-QDX-760/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2117486338798, "confidence": [2020.2117486338798, 2020.2117486338798]}, "tsne_y": {"value": -10.87369938176758}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Connecticut"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.738752032612853}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.931350527824247}, "tsne_x": {"value": -7.577160942769328}, "mds3": {"value": 2.576491861711475}, "umap_x": {"value": 7.482104}, "pca2": {"value": -0.254572792012774}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.327878574994961}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.022848}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C13517T", "C25350T"], "S": ["P1263L"]}, "labels": {"aa": "S: P1263L"}}}, {"name": "NODE_0000539", "node_attrs": {"div": 4, "num_date": {"value": 2020.1933563341029, "confidence": [2020.1619201848596, 2020.221423310749]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C3194/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_y": {"value": -10.83408322612162}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -2.2336617153752303}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 9.437433025206149}, "tsne_x": {"value": -7.692981197418287}, "mds3": {"value": 0.4949692731800447}, "umap_x": {"value": 7.5925765}, "pca2": {"value": 17.327098249641306}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.0657047502023769}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.228773}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C13011T", "G18703T"]}}}, {"name": "NODE_0000540", "node_attrs": {"div": 4, "num_date": {"value": 2020.2111985741121, "confidence": [2020.1615575215224, 2020.2247099336412]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV161/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.23087431694, "confidence": [2020.23087431694, 2020.23087431694]}, "tsne_y": {"value": -10.842143035431384}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.974175026464867}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.262419373418802}, "tsne_x": {"value": -7.616168720084279}, "mds3": {"value": 2.311888980900581}, "umap_x": {"value": 7.6596565}, "pca2": {"value": -15.40175655612776}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.3514655375055096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.288242}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G14160T"]}}}, {"name": "NODE_0000541", "node_attrs": {"div": 4, "num_date": {"value": 2020.2170966776519, "confidence": [2020.1900013290353, 2020.2526447098921]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR2074/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_y": {"value": -10.013027141289273}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.1429866904059864}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.325996036619569}, "tsne_x": {"value": -9.685032150336294}, "mds3": {"value": 2.9081195101497825}, "umap_x": {"value": 7.719883}, "pca2": {"value": 6.111580544914144}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.9701556759346242}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.383514}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C4683T"]}}}, {"name": "NODE_0000543", "node_attrs": {"div": 4, "num_date": {"value": 2020.2360674950041, "confidence": [2020.2084639584596, 2020.2821267272234]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C4447/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.3428961748634, "confidence": [2020.3428961748634, 2020.3428961748634]}, "tsne_y": {"value": -10.971278575105798}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -2.217113771939706}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 20.74991216913304}, "tsne_x": {"value": -8.013678655689453}, "mds3": {"value": 0.9572660030422564}, "umap_x": {"value": 7.5862775}, "pca2": {"value": 20.325345719978728}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.124598937792271}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.275536}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C9996T", "C25919T"]}}}, {"name": "NODE_0000548", "node_attrs": {"div": 4, "num_date": {"value": 2020.2436450352964, "confidence": [2020.2189808586772, 2020.2895276018005]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-BPHL-1978/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2937158469945, "confidence": [2020.2937158469945, 2020.2937158469945]}, "tsne_y": {"value": -10.903378988492518}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -2.379285161362866}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 49.92636024501663}, "tsne_x": {"value": -7.555310930371924}, "mds3": {"value": 1.05678904858518}, "umap_x": {"value": 7.58971}, "pca2": {"value": -6.251977888940047}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.506906390882838}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.202036}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T1592C", "C9943T"]}}}, {"name": "NODE_0000549", "node_attrs": {"div": 4, "num_date": {"value": 2020.2605111194557, "confidence": [2020.2046587247762, 2020.2985550484527]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000552", "node_attrs": {"div": 4, "num_date": {"value": 2020.2895377054226, "confidence": [2020.2051693862634, 2020.301912568306]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/ICO1068/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3428961748634, "confidence": [2020.3428961748634, 2020.3428961748634]}, "tsne_y": {"value": -10.534930364534176}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.935727609200736}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -9.14344831102231}, "tsne_x": {"value": -8.127849488595977}, "mds3": {"value": 2.4218134980944503}, "umap_x": {"value": 7.475269}, "pca2": {"value": -19.19116948195347}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.5675886266121732}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.851437}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T241C", "T27299C", "T29148C"]}}}, {"name": "KEN/C1357/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.301912568306, "confidence": [2020.301912568306, 2020.301912568306]}, "tsne_y": {"value": -10.98903360975595}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -2.416026106651323}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 50.29610480843608}, "tsne_x": {"value": -7.717768733530401}, "mds3": {"value": 1.0093898139765645}, "umap_x": {"value": 7.6697993}, "pca2": {"value": 1.896797693720079}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.2995206748483648}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.324806}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000553", "node_attrs": {"div": 4, "num_date": {"value": 2020.2795026823221, "confidence": [2020.202795195731, 2020.3080609416058]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000457", "node_attrs": {"div": 5, "num_date": {"value": 2020.326238266247, "confidence": [2020.2683955199543, 2020.3557792147697]}}, "branch_attrs": {"mutations": {"nuc": ["C28854T"]}}, "children": [{"name": "NODE_0000458", "node_attrs": {"div": 6, "num_date": {"value": 2020.3557195553715, "confidence": [2020.3011150070847, 2020.367451768205]}}, "branch_attrs": {"mutations": {"nuc": ["G2164C"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-3159/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3674863387978, "confidence": [2020.3674863387978, 2020.3674863387978]}, "tsne_y": {"value": -11.684662441166967}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.4870996498959907}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 1.607156189633618}, "tsne_x": {"value": -7.841390190780953}, "mds3": {"value": 2.928108589441551}, "umap_x": {"value": 7.492426}, "pca2": {"value": -9.879918537711529}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.2967551621173627}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.126957}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G27467T"]}}}, {"name": "NODE_0000459", "node_attrs": {"div": 7, "num_date": {"value": 2020.4116913341986, "confidence": [2020.308796982696, 2020.5132167463082]}}, "branch_attrs": {"mutations": {"nuc": ["A20268G"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0019/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.610655737705, "confidence": [2020.610655737705, 2020.610655737705]}, "tsne_y": {"value": -12.340807553072324}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.184834604973505}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.1316541413546775}, "tsne_x": {"value": -8.107690706263998}, "mds3": {"value": 7.935347895471504}, "umap_x": {"value": 7.4996357}, "pca2": {"value": -5.3758488439965095}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -10.048298187723017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.732774}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3558G", "T8729C", "C12459T", "C21691T", "G22093T", "C29421T"], "S": ["M177I"]}, "labels": {"aa": "S: M177I"}}}, {"name": "NODE_0000557", "node_attrs": {"div": 7, "num_date": {"value": 2020.4578282258265, "confidence": [2020.3046555875342, 2020.5294029258705]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-2116/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.73087431694, "confidence": [2020.73087431694, 2020.73087431694]}, "tsne_y": {"value": -12.204679566048783}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.3912256417073603}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.597503230268301}, "tsne_x": {"value": -8.3489457225833}, "mds3": {"value": 1.9178870638925751}, "umap_x": {"value": 7.4076557}, "pca2": {"value": -9.812766164505124}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.859574573689504}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.038578}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3874T", "C3923T", "G11083T", "C21846T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-2107/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7226775956285, "confidence": [2020.7226775956285, 2020.7226775956285]}, "tsne_y": {"value": -12.403211383903043}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.38135327772666}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.2679836423874224}, "tsne_x": {"value": -8.015917321447509}, "mds3": {"value": 6.983418864677803}, "umap_x": {"value": 7.859763}, "pca2": {"value": 1.2660891660510067}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -17.013318545006236}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.543221}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3298C", "C3587T", "C8655T", "C13356T", "T14568C", "G20709T", "C21642T", "G22708T", "C25487T", "G25555T"], "S": ["A27V"]}, "labels": {"aa": "S: A27V"}}}]}]}]}, {"name": "NODE_0000558", "node_attrs": {"div": 5, "num_date": {"value": 2020.3673190575896, "confidence": [2020.286580542052, 2020.5688104165279]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "FRA/IHUCOVID-035623_Nova1/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.6571038251366, "confidence": [2020.6571038251366, 2020.6571038251366]}, "tsne_y": {"value": -10.067851479529084}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.801832890827212}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.626336229579568}, "tsne_x": {"value": -8.618148676802468}, "mds3": {"value": 6.716625515449224}, "umap_x": {"value": 7.4978657}, "pca2": {"value": 10.718640281131776}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.7635256465769427}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.968294}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1068A", "C1912T", "G5210A", "C15324T", "C17470T", "C21191T", "A23148G", "T27125C"], "S": ["K529R"]}, "labels": {"aa": "S: K529R"}}}, {"name": "NODE_0000559", "node_attrs": {"div": 5, "num_date": {"value": 2020.5860655737704, "confidence": [2020.4621962898138, 2020.5860655737704]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NM-UNM-00421/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.5860655737704, "confidence": [2020.5860655737704, 2020.5860655737704]}, "tsne_y": {"value": -11.312340036944107}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -2.231580913055168}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 56.44396348241032}, "tsne_x": {"value": -8.185496776973048}, "mds3": {"value": 1.3760857918472835}, "umap_x": {"value": 7.6141176}, "pca2": {"value": 0.1621127771640845}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.6114875503408681}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.26021}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000463", "node_attrs": {"div": 10, "num_date": {"value": 2020.8173152571246, "confidence": [2020.7301143029933, 2020.8675218202154]}}, "branch_attrs": {"mutations": {"nuc": ["C6312T", "A10124G", "C17518T", "C23664T", "A28133T"], "S": ["A701V"]}, "labels": {"aa": "S: A701V"}}, "children": [{"name": "MYS/M_N24970/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_y": {"value": -14.39369907818982}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.524"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Malaysia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.194974200906648}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -2.9696012585220046}, "tsne_x": {"value": -8.845900323065525}, "mds3": {"value": 5.840419313898241}, "umap_x": {"value": 7.454437}, "pca2": {"value": -0.1016852497411909}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.667631850090741}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.283842}, "country": {"value": "Malaysia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000464", "node_attrs": {"div": 13, "num_date": {"value": 2020.8942537172354, "confidence": [2020.857722099384, 2020.8948087431695]}}, "branch_attrs": {"mutations": {"nuc": ["C8637T", "C21516T", "C21622A"]}}, "children": [{"name": "MYS/NCOV10471/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.8948087431695, "confidence": [2020.8948087431695, 2020.8948087431695]}, "tsne_y": {"value": -14.532880469730332}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.524"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Malaysia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.1972804002340012}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.015237545944209}, "tsne_x": {"value": -8.884282138751889}, "mds3": {"value": 3.8385746197654633}, "umap_x": {"value": 7.491522}, "pca2": {"value": 0.0829771087275429}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.90092628896394}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.283581}, "country": {"value": "Malaysia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000562", "node_attrs": {"div": 13, "num_date": {"value": 2020.9139344262296, "confidence": [2020.8836250331642, 2020.9139344262296]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MYS/M_N27996/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.9139344262296, "confidence": [2020.9139344262296, 2020.9139344262296]}, "tsne_y": {"value": -14.532124996291438}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.524"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Malaysia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.1080830145370917}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.14693435321353}, "tsne_x": {"value": -8.883255895199966}, "mds3": {"value": 3.582737672803864}, "umap_x": {"value": 7.4104223}, "pca2": {"value": -0.1624344427110763}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.74775189456162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.164926}, "country": {"value": "Malaysia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "MYS/C7926/2021", "node_attrs": {"div": 13, "num_date": {"value": 2021.0397260273974, "confidence": [2021.0397260273974, 2021.0397260273974]}, "tsne_y": {"value": -14.531370065667495}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.524"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Malaysia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.3805223954920383}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -1.0694903849059465}, "tsne_x": {"value": -8.881970138656083}, "mds3": {"value": 6.587310125854502}, "umap_x": {"value": 7.4921246}, "pca2": {"value": 0.5575689758542186}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.419204416374924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.0718975}, "country": {"value": "Malaysia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}, {"name": "NODE_0000563", "node_attrs": {"div": 4, "num_date": {"value": 2020.2883197751416, "confidence": [2020.2048785496158, 2020.3190112688308]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-04138/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_y": {"value": -9.795136993837156}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -0.6193353094345476}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 26.0229577830496}, "tsne_x": {"value": -8.010205659340341}, "mds3": {"value": 4.578128517226799}, "umap_x": {"value": 7.508772}, "pca2": {"value": -17.748815155591895}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.786705935407673}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.843824}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A532T", "C5184T", "C5986T", "C23248T", "C26256T", "C26858T", "C29668T"]}}}, {"name": "NODE_0000564", "node_attrs": {"div": 4, "num_date": {"value": 2020.3645076205635, "confidence": [2020.2552556897294, 2020.4193989071039]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/CUNCI-HGC3I014/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.4193989071039, "confidence": [2020.4193989071039, 2020.4193989071039]}, "tsne_y": {"value": -10.922486563700293}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.735875040262585}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.247084039314301}, "tsne_x": {"value": -6.917280452655609}, "mds3": {"value": 2.5358784688165232}, "umap_x": {"value": 7.6865335}, "pca2": {"value": -9.115547277448128}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.619084828315309}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.36438}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000565", "node_attrs": {"div": 4, "num_date": {"value": 2020.4093813824236, "confidence": [2020.2247005701881, 2020.4735316980484]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000468", "node_attrs": {"div": 8, "num_date": {"value": 2020.5908974973054, "confidence": [2020.43013236477, 2020.6890704748055]}}, "branch_attrs": {"mutations": {"nuc": ["G5542T", "C10029T", "G17122T", "G17320T"]}}, "children": [{"name": "KEN/C69751/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.8428961748634, "confidence": [2020.8428961748634, 2020.8428961748634]}, "tsne_y": {"value": -14.170340174858442}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.589196222111683}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.617438444722161}, "tsne_x": {"value": -7.543608270673776}, "mds3": {"value": 0.5169160397246163}, "umap_x": {"value": 7.534215}, "pca2": {"value": 1.6880276867805528}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.710651388510286}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.618757}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1091T", "G8213A", "C11644T", "A24206G", "G25793T", "G26217T"], "S": ["I882V"]}, "labels": {"aa": "S: I882V"}}}, {"name": "NODE_0000469", "node_attrs": {"div": 11, "num_date": {"value": 2020.711333750255, "confidence": [2020.6512826777853, 2020.784644126128]}}, "branch_attrs": {"mutations": {"nuc": ["C1514T", "A11451G", "C18463T"]}}, "children": [{"name": "KEN/C64725/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7882513661202, "confidence": [2020.7882513661202, 2020.7882513661202]}, "tsne_y": {"value": -14.518145123196868}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.549"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.8206728264738556}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.217943489113959}, "tsne_x": {"value": -7.5171915164220335}, "mds3": {"value": -0.9453821704114408}, "umap_x": {"value": 7.493375}, "pca2": {"value": 0.8175260304517264}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 6.277942100197684}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.457699}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C11003T", "G28001A"]}}}, {"name": "NODE_0000568", "node_attrs": {"div": 11, "num_date": {"value": 2020.7547218190723, "confidence": [2020.6584769349636, 2020.7934595602642]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C67062/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_y": {"value": -14.528400659496375}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.549"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.695220672837024}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.213983914881367}, "tsne_x": {"value": -7.515524321382178}, "mds3": {"value": -0.4303768587333388}, "umap_x": {"value": 7.457991}, "pca2": {"value": 0.8238037192885584}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.816394731342434}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.862254}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G12243A", "C25521T", "A26069G"]}}}, {"name": "KEN/C68312/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.8265027322404, "confidence": [2020.8265027322404, 2020.8265027322404]}, "tsne_y": {"value": -14.467532172112708}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.549"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.5304785847780372}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.385477137610091}, "tsne_x": {"value": -7.521864756388978}, "mds3": {"value": -0.459771322179533}, "umap_x": {"value": 7.5377307}, "pca2": {"value": 1.300799399940202}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.4264287255024148}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.33079}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000569", "node_attrs": {"div": 4, "num_date": {"value": 2020.4210456245455, "confidence": [2020.2304950204307, 2020.4805770103944]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000570", "node_attrs": {"div": 4, "num_date": {"value": 2020.433849411865, "confidence": [2020.2327528094386, 2020.4873697895127]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-LACPHL-AE00088/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5642076502731, "confidence": [2020.5642076502731, 2020.5642076502731]}, "tsne_y": {"value": -9.308582364187956}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.126"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.4512936900621591}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.175148339514416}, "tsne_x": {"value": -8.175603344647355}, "mds3": {"value": 5.764969894715525}, "umap_x": {"value": 7.5012074}, "pca2": {"value": -0.7744447358609567}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -10.967856100354147}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.172987}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G524-", "A525-", "G526-", "C527-", "T528-", "G529-", "T3011C", "G5704T", "C7764T", "G10193A", "G22205T", "G23611T", "G25855T", "T27869C", "T28853G"], "S": ["D215Y"]}, "labels": {"aa": "S: D215Y"}}}, {"name": "NODE_0000571", "node_attrs": {"div": 4, "num_date": {"value": 2020.479348787328, "confidence": [2020.2937022474384, 2020.5505464480875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-DCVN4/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.5505464480875, "confidence": [2020.5505464480875, 2020.5505464480875]}, "tsne_y": {"value": -10.870233693419872}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.170140485628545}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.345614307741976}, "tsne_x": {"value": -7.600153649266365}, "mds3": {"value": 2.3353773341055413}, "umap_x": {"value": 7.6213174}, "pca2": {"value": -9.423620171583556}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.3451373464556218}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.240816}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T26258C"]}}}, {"name": "NODE_0000572", "node_attrs": {"div": 4, "num_date": {"value": 2020.5169040520243, "confidence": [2020.2945919308243, 2020.58942354168]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C68057/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_y": {"value": -9.820821414842786}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.530"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.9638323902379742}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.6972451402393935}, "tsne_x": {"value": -8.186307886364974}, "mds3": {"value": 0.3512764140277484}, "umap_x": {"value": 7.500431}, "pca2": {"value": 1.2853019472277625}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 5.489504062197781}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.380872}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G61T", "A3291G", "C11050T", "G16935T", "A19339G", "C23604A", "C26549T", "T29471C", "C29750T"], "S": ["P681H"]}, "labels": {"aa": "S: P681H"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-2032/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_y": {"value": -10.210814792349485}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.7013580823045078}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.579211901973308}, "tsne_x": {"value": -7.875996800200242}, "mds3": {"value": 2.328856855971208}, "umap_x": {"value": 7.4829664}, "pca2": {"value": -6.656495726984344}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.7855717268432447}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.633257}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G3567T", "C6432T", "C6695T", "C26537T"]}}}]}]}]}, {"name": "NODE_0000573", "node_attrs": {"div": 4, "num_date": {"value": 2020.4591420536492, "confidence": [2020.2336326294792, 2020.5013661202186]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C27611/2020", "node_attrs": {"div": 4, "num_date": {"value": 2020.5013661202186, "confidence": [2020.5013661202186, 2020.5013661202186]}, "tsne_y": {"value": -10.887924773174042}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.5485780377325344}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.80207697141933}, "tsne_x": {"value": -7.652336035788135}, "mds3": {"value": 2.100622482610617}, "umap_x": {"value": 7.640804}, "pca2": {"value": 16.316309530416806}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.1566485240145343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.271168}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000387", "node_attrs": {"div": 11, "num_date": {"value": 2020.6014797416308, "confidence": [2020.4218834790183, 2020.742370556582]}}, "branch_attrs": {"mutations": {"nuc": ["T445C", "C6286T", "G21255C", "C22227T", "C26801G", "C28932T", "G29645T"], "S": ["A222V"]}, "labels": {"aa": "S: A222V"}}, "children": [{"name": "NODE_0000393", "node_attrs": {"div": 12, "num_date": {"value": 2020.6568670959712, "confidence": [2020.4610935109906, 2020.771290455606]}}, "branch_attrs": {"mutations": {"nuc": ["C27944T"]}}, "children": [{"name": "NODE_0000394", "node_attrs": {"div": 14, "num_date": {"value": 2020.7800473866212, "confidence": [2020.6436320072744, 2020.863170610463]}}, "branch_attrs": {"mutations": {"nuc": ["C12119T", "C25889T"]}}, "children": [{"name": "NZL/20CV0567/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.870218579235, "confidence": [2020.870218579235, 2020.870218579235]}, "tsne_y": {"value": -14.088270992730695}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.177.81"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -3.780769153695081}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 44.16193905431819}, "tsne_x": {"value": -10.910241029815886}, "mds3": {"value": 5.644069412666172}, "umap_x": {"value": 7.817439}, "pca2": {"value": -5.277529862456913}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": -17.97391987125435}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.507654}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1962T", "A4166G", "A17332G"]}}}, {"name": "IMS-10587-CVDP-38213528-47DF-4A8A-84D3-A6BA456B6127", "node_attrs": {"div": 18, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_y": {"value": -14.078963607247324}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177.81"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.1412764874825968}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.153644506557416}, "tsne_x": {"value": -10.903214758069064}, "mds3": {"value": 2.9467229075672154}, "umap_x": {"value": 7.8897934}, "pca2": {"value": 16.422032294653338}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": -18.037068731091203}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.58989}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C8078T", "C16457T", "A21222T", "T23377C"]}}}]}, {"name": "NODE_0000395", "node_attrs": {"div": 13, "num_date": {"value": 2020.6999870100688, "confidence": [2020.498859455119, 2020.7937507799002]}}, "branch_attrs": {"mutations": {"nuc": ["G204T"]}}, "children": [{"name": "NZL/20CV0540/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.853825136612, "confidence": [2020.853825136612, 2020.853825136612]}, "tsne_y": {"value": -14.078156035629007}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.802916561936092}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.533034844567537}, "tsne_x": {"value": -10.904754796888358}, "mds3": {"value": -0.6427863282296444}, "umap_x": {"value": 7.8371086}, "pca2": {"value": -2.3271435459589025}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": 11.961072983858251}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.592624}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C7926T", "C9745T", "C11058T", "C14724T", "A16044C"]}}}, {"name": "NZL/20CV0630/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.9193989071039, "confidence": [2020.9193989071039, 2020.9193989071039]}, "tsne_y": {"value": -14.059679085903223}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.88047117350796}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.904386496207795}, "tsne_x": {"value": -10.902338606114826}, "mds3": {"value": 5.972756818872119}, "umap_x": {"value": 8.286657}, "pca2": {"value": -0.2100451889855144}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": -23.600852190495434}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.7605295}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3405G", "C12733T", "G18816T", "C21614T", "A25296G", "G27441T", "G28077T", "C28409T"], "S": ["L18F", "K1245R"]}, "labels": {"aa": "S: L18F, K1245R"}}}]}]}, {"name": "NODE_0000580", "node_attrs": {"div": 11, "num_date": {"value": 2020.6346289693158, "confidence": [2020.4205456138088, 2020.74084378246]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000391", "node_attrs": {"div": 14, "num_date": {"value": 2020.713742417804, "confidence": [2020.5571808113052, 2020.7937739902286]}}, "branch_attrs": {"mutations": {"nuc": ["C1513T", "G22346T", "C22377T"], "S": ["A262S", "P272L"]}, "labels": {"aa": "S: A262S, P272L"}}, "children": [{"name": "OU086496", "node_attrs": {"div": 24, "num_date": {"value": 2021.16301369863, "confidence": [2021.16301369863, 2021.16301369863]}, "tsne_y": {"value": -14.243819188054808}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177.83"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.259980373518104}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.9704275535537805}, "tsne_x": {"value": -11.018128858075018}, "mds3": {"value": 0.6642700970225861}, "umap_x": {"value": 8.458427}, "pca2": {"value": -6.085038804499972}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": 11.939641240529284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.121854}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2062T", "C2449T", "G3122T", "C6285T", "C10138T", "A12526G", "G16377T", "T18691G", "T22897C", "C27982A"]}}}, {"name": "NODE_0000392", "node_attrs": {"div": 17, "num_date": {"value": 2020.7981190085245, "confidence": [2020.7206552673308, 2020.8272220952956]}}, "branch_attrs": {"mutations": {"nuc": ["T3475C", "C11747T", "G16795T"]}}, "children": [{"name": "Switzerland/SH-ETHZ-350184/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8428961748634, "confidence": [2020.8428961748634, 2020.8428961748634]}, "tsne_y": {"value": -14.1224346965787}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "Schaffhausen"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.951052134441223}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.05518528774225}, "tsne_x": {"value": -10.935322297460475}, "mds3": {"value": 3.400809173688265}, "umap_x": {"value": 7.7211514}, "pca2": {"value": -9.162181665134929}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": 0.9459822292291508}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.540937}, "country": {"value": "Switzerland"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C28740T"]}}}, {"name": "NZL/20CV0596/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8346994535518, "confidence": [2020.8346994535518, 2020.8346994535518]}, "tsne_y": {"value": -14.147577341909098}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.152940321418026}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 2.787713912839084}, "tsne_x": {"value": -10.954986615310936}, "mds3": {"value": 6.182485695465481}, "umap_x": {"value": 7.844101}, "pca2": {"value": 0.8975577969813334}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": -19.07695424647952}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.475572}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G18363A", "C20384T"]}}}]}]}, {"name": "NODE_0000583", "node_attrs": {"div": 11, "num_date": {"value": 2020.6710792038905, "confidence": [2020.419782974112, 2020.7484599415227]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Iceland/5440/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.7882513661202, "confidence": [2020.7882513661202, 2020.7882513661202]}, "tsne_y": {"value": -14.059649531099824}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "Iceland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.1283295821372165}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.137157859014994}, "tsne_x": {"value": -10.877542619662464}, "mds3": {"value": 3.2290216720856963}, "umap_x": {"value": 7.4618516}, "pca2": {"value": -9.145191158205575}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": -11.754864458884123}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.13012}, "country": {"value": "Iceland"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T6023C", "G11083T", "G19999T"]}}}, {"name": "NODE_0000585", "node_attrs": {"div": 11, "num_date": {"value": 2020.7026850573886, "confidence": [2020.418800117365, 2020.7682596007664]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU077422", "node_attrs": {"div": 17, "num_date": {"value": 2021.072602739726, "confidence": [2021.072602739726, 2021.072602739726]}, "tsne_y": {"value": -14.038098288541596}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.5204568484210463}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.757769611415142}, "tsne_x": {"value": -10.863446969954923}, "mds3": {"value": 4.691319667078685}, "umap_x": {"value": 7.827678}, "pca2": {"value": -16.205070132618896}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": -17.61455196574759}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.584634}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1884T", "G4006T", "C5170T", "G5504A", "G11132T", "T26609C"]}}}, {"name": "NZL/20CV0665/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_y": {"value": -13.977609028799398}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.177.73"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "14"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.177"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.40769886167372}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.953796942266029}, "tsne_x": {"value": -10.828684041106811}, "mds3": {"value": 6.540530458255942}, "umap_x": {"value": 8.217947}, "pca2": {"value": 11.912606467430097}, "Nextstrain_clade": {"value": "20E (EU1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "12"}, "mds2": {"value": -22.79296143059712}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.717023}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "A2473G", "C4113T", "T7543C", "C13671T", "C24138T", "A24774T", "C26060A", "C29754T"], "S": ["T859I", "Q1071L"]}, "labels": {"aa": "S: T859I, Q1071L"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000396", "node_attrs": {"div": 5, "num_date": {"value": 2020.1564807402142, "confidence": [2020.1315564480628, 2020.1571038251366]}}, "branch_attrs": {"mutations": {"nuc": ["A20268G"]}}, "children": [{"name": "Switzerland/GE-SNRCI-29943121/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_y": {"value": -11.195100444628318}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Geneva"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.756005633130636}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.887179739585667}, "tsne_x": {"value": -8.0990059654099}, "mds3": {"value": 2.7107191418154115}, "umap_x": {"value": 7.6018834}, "pca2": {"value": -13.985701742725231}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.4880298852445666}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.16654}, "country": {"value": "Switzerland"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000401", "node_attrs": {"div": 6, "num_date": {"value": 2020.1839316597086, "confidence": [2020.1582972963158, 2020.2111583134013]}}, "branch_attrs": {"mutations": {"nuc": ["G29734C"]}}, "children": [{"name": "GHA/2709_S25/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_y": {"value": -11.043136502471452}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.3141278968791101}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.442212120535489}, "tsne_x": {"value": -8.696714062006793}, "mds3": {"value": 2.174070110903924}, "umap_x": {"value": 7.523834}, "pca2": {"value": -6.6770808618997695}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.827426080814651}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.496727}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T1873G", "C16699T", "C20629T", "C27211A"]}}}, {"name": "FRA/IHUCOVID-000270_Illu2/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.2472677595629, "confidence": [2020.2472677595629, 2020.2472677595629]}, "tsne_y": {"value": -11.210262742316113}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.9837672055234667}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.42814710443425}, "tsne_x": {"value": -8.199670073253966}, "mds3": {"value": 2.29640374740132}, "umap_x": {"value": 7.503312}, "pca2": {"value": 11.16138630493785}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.5639510699840042}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.173885}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000588", "node_attrs": {"div": 5, "num_date": {"value": 2020.1605393859284, "confidence": [2020.1330317776976, 2020.2070571038846]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Coquimbo-PUC_MVL_0194/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3155737704917, "confidence": [2020.3155737704917, 2020.3155737704917]}, "tsne_y": {"value": -11.30281893207858}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.15088858979286}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.998330335711728}, "tsne_x": {"value": -8.29445934934523}, "mds3": {"value": 2.3867082270601414}, "umap_x": {"value": 7.478567}, "pca2": {"value": 12.47474033718852}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.3190798527519645}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.654377}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "G695-", "A696-", "C697-", "T698-", "T699-", "A700-", "G25617T", "G27601T"]}}}, {"name": "NODE_0000590", "node_attrs": {"div": 5, "num_date": {"value": 2020.1831463756203, "confidence": [2020.1592004138886, 2020.2104941443654]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000591", "node_attrs": {"div": 5, "num_date": {"value": 2020.1856548595604, "confidence": [2020.1688777540992, 2020.228064461679]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/CPHL-NRC-18/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.23087431694, "confidence": [2020.23087431694, 2020.23087431694]}, "tsne_y": {"value": -11.307433924597582}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.3216412952981766}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.853587656801186}, "tsne_x": {"value": -8.279053602755083}, "mds3": {"value": 2.506249189952913}, "umap_x": {"value": 7.5231924}, "pca2": {"value": -1.5523659695535257}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.7540010830707653}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.817337}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C13862T", "C20178T"]}}}, {"name": "NODE_0000408", "node_attrs": {"div": 8, "num_date": {"value": 2020.2879122457712, "confidence": [2020.2417336049575, 2020.31427691146]}}, "branch_attrs": {"mutations": {"nuc": ["C18176T", "C27970T", "C29578T"]}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0268/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_y": {"value": -11.869908277578675}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.3666400005053045}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.072771692903901}, "tsne_x": {"value": -7.947004568436739}, "mds3": {"value": 4.836650102869677}, "umap_x": {"value": 7.3845115}, "pca2": {"value": 12.867544336335552}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.997849584254335}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.733847}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T2992G"]}}}, {"name": "CHL/Santiago-PUC_MVL_0280/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3292349726776, "confidence": [2020.3292349726776, 2020.3292349726776]}, "tsne_y": {"value": -11.989323177010087}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.8065373511922727}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.264461481347799}, "tsne_x": {"value": -7.869777848670509}, "mds3": {"value": 1.1775455052504993}, "umap_x": {"value": 7.4839926}, "pca2": {"value": 14.342570107199844}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.9295958972304232}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.466896}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C4755T", "G24794T"], "S": ["A1078S"]}, "labels": {"aa": "S: A1078S"}}}]}]}, {"name": "NODE_0000597", "node_attrs": {"div": 5, "num_date": {"value": 2020.185355039211, "confidence": [2020.164242768596, 2020.2126297735965]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000599", "node_attrs": {"div": 5, "num_date": {"value": 2020.2101724867052, "confidence": [2020.1616182311159, 2020.2609289617487]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Los_Andes-PUC_MVL_0156/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2609289617487, "confidence": [2020.2609289617487, 2020.2609289617487]}, "tsne_y": {"value": -11.190729320223246}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.5493179958356422}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.047338162416783}, "tsne_x": {"value": -8.097740520871401}, "mds3": {"value": 2.616499842132649}, "umap_x": {"value": 7.557517}, "pca2": {"value": 12.616650641721764}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.4629180246484024}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.191198}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000417", "node_attrs": {"div": 13, "num_date": {"value": 2020.3836354551188, "confidence": [2020.3443229301433, 2020.4222654039354]}}, "branch_attrs": {"mutations": {"nuc": ["C3261T", "C9711T", "C17012T", "C21304A", "G21305A", "G26152T", "C27304T", "G29703T"]}}, "children": [{"name": "ARG/Cordoba-12873-61/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_y": {"value": -13.530234771476682}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.502973207915297}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.997214785119314}, "tsne_x": {"value": -8.1501926440965}, "mds3": {"value": 1.3311922938227418}, "umap_x": {"value": 7.5625076}, "pca2": {"value": 11.99073360193978}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.556778374451785}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.561823}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G16558A", "C27925T"]}}}, {"name": "NODE_0000602", "node_attrs": {"div": 13, "num_date": {"value": 2020.4089808673027, "confidence": [2020.3607318099928, 2020.4248633879781]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARG/Cordoba-11300-61/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_y": {"value": -13.429825840739822}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.598668248785476}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.0184182941245985}, "tsne_x": {"value": -8.155508711744485}, "mds3": {"value": 3.2121366517979526}, "umap_x": {"value": 7.463897}, "pca2": {"value": 14.328207486913152}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -7.322811337527487}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.057373}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "ARG/Cordoba-1083-6/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4248633879781, "confidence": [2020.4248633879781, 2020.4248633879781]}, "tsne_y": {"value": -13.515592548651515}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.0301496069671767}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.074301485277402}, "tsne_x": {"value": -8.150256171181697}, "mds3": {"value": 4.792477937916246}, "umap_x": {"value": 7.562802}, "pca2": {"value": 12.63230257091356}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -12.31512052257244}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.740144}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G26909C"]}}}]}]}]}, {"name": "NODE_0000603", "node_attrs": {"div": 5, "num_date": {"value": 2020.200144654361, "confidence": [2020.1678603936696, 2020.2150256801938]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000604", "node_attrs": {"div": 5, "num_date": {"value": 2020.2152157097707, "confidence": [2020.1985387923744, 2020.2199453551912]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0270/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_y": {"value": -11.199298542030332}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Hawkes Bay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.8200647991683017}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.9254568042553433}, "tsne_x": {"value": -8.092784031286763}, "mds3": {"value": 2.7462800870913675}, "umap_x": {"value": 7.5199466}, "pca2": {"value": -0.2532844343276941}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.4696256307329931}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.111616}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000605", "node_attrs": {"div": 5, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2146391582248, 2020.2390710382513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0043/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.2390710382513, "confidence": [2020.2390710382513, 2020.2390710382513]}, "tsne_y": {"value": -11.19608715920323}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.2757591748752395}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.967035532761852}, "tsne_x": {"value": -8.110573408708591}, "mds3": {"value": 3.064918031507116}, "umap_x": {"value": 7.5642715}, "pca2": {"value": 11.962636578768592}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.6217966005848683}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.031351}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000606", "node_attrs": {"div": 5, "num_date": {"value": 2020.312321316062, "confidence": [2020.251094256701, 2020.3155737704917]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0229/2020", "node_attrs": {"div": 5, "num_date": {"value": 2020.3155737704917, "confidence": [2020.3155737704917, 2020.3155737704917]}, "tsne_y": {"value": -11.184971764834003}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.8682725379298453}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.158413984377908}, "tsne_x": {"value": -8.102534695880749}, "mds3": {"value": 2.82003661866819}, "umap_x": {"value": 7.5502505}, "pca2": {"value": 13.508820268227511}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.4488441971936086}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.177784}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000607", "node_attrs": {"div": 5, "num_date": {"value": 2020.3260590820128, "confidence": [2020.2845023050759, 2020.3660812276917]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NE-MP_NCOV20-34236/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_y": {"value": -11.372656339814863}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nebraska"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.021686861477194}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.9251064739689134}, "tsne_x": {"value": -8.341369300015577}, "mds3": {"value": 3.4494254180045987}, "umap_x": {"value": 7.465397}, "pca2": {"value": -0.2531860880131497}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.076783055065413}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.066257}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G2447A", "C7420T", "G18225T"]}}}, {"name": "NODE_0000608", "node_attrs": {"div": 5, "num_date": {"value": 2020.3663465569334, "confidence": [2020.2839758534587, 2020.4357923497269]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-5132607/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -11.252487517907884}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.499105612298431}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.881849604478709}, "tsne_x": {"value": -8.166188495731038}, "mds3": {"value": 2.584216512836901}, "umap_x": {"value": 7.5452833}, "pca2": {"value": 11.419127568730918}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.587581792659006}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.085436}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C12513T"]}}}, {"name": "NODE_0000609", "node_attrs": {"div": 5, "num_date": {"value": 2020.4155257487391, "confidence": [2020.279392749841, 2020.4794980876845]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GMB/3666/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.5696721311476, "confidence": [2020.5696721311476, 2020.5696721311476]}, "tsne_y": {"value": -10.829281907736744}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.416"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gambia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.0050533847742361}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 4.089473546078644}, "tsne_x": {"value": -8.704319860367129}, "mds3": {"value": 2.18242235896454}, "umap_x": {"value": 7.5221944}, "pca2": {"value": 1.6616920247182685}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -6.285468903098736}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.359217}, "country": {"value": "Gambia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1186A", "C1625T", "C5284T", "C19313T", "G22226A", "G22706T"], "S": ["A222T", "V382L"]}, "labels": {"aa": "S: A222T, V382L"}}}, {"name": "NODE_0000413", "node_attrs": {"div": 6, "num_date": {"value": 2020.5579773694733, "confidence": [2020.3791369684852, 2020.6622536651748]}}, "branch_attrs": {"mutations": {"nuc": ["C4582T"]}}, "children": [{"name": "USA/TG817063/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7636612021859, "confidence": [2020.7636612021859, 2020.7636612021859]}, "tsne_y": {"value": -10.64587328625068}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.609"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.204424103254296}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 11.227560374726506}, "tsne_x": {"value": -9.30019211440442}, "mds3": {"value": 4.950652517783566}, "umap_x": {"value": 7.535082}, "pca2": {"value": 6.719512093051208}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -10.116525446178054}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.029155}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1104C", "A2360G", "A13758G", "C21998T", "C23683T", "A28874G", "G28975T"], "S": ["H146Y"]}, "labels": {"aa": "S: H146Y"}}}, {"name": "NODE_0000611", "node_attrs": {"div": 6, "num_date": {"value": 2020.7030225706367, "confidence": [2020.2965425433033, 2020.9599338315272]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AZ-CDC-QDX22555507/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.1575342465753, "confidence": [2021.1575342465753, 2021.1575342465753]}, "tsne_y": {"value": -10.71169913976495}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.609"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.623866789694784}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9361530088837537}, "tsne_x": {"value": -9.958791599243156}, "mds3": {"value": 4.369231086855788}, "umap_x": {"value": 7.854001}, "pca2": {"value": -0.2271000821991925}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -15.222928688759165}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.629827}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3784T", "A8088G", "C8175T", "T18300G", "G19086T", "C21575T", "C22088T", "C22995G", "G26262T", "G26787A", "G28655T", "G28881A"], "S": ["L5F", "L176F", "T478R"]}, "labels": {"aa": "S: L5F, L176F, T478R"}}}, {"name": "MEX/BCS-15/2020", "node_attrs": {"div": 6, "num_date": {"value": 2020.974043715847, "confidence": [2020.974043715847, 2020.974043715847]}, "tsne_y": {"value": -11.219822236758484}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.609"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.3692551657091383}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -7.955808747921251}, "tsne_x": {"value": -8.21796673280023}, "mds3": {"value": 3.115405529304044}, "umap_x": {"value": 7.443447}, "pca2": {"value": -13.500718961003432}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.7982877222716187}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.6916}, "country": {"value": "Mexico"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000612", "node_attrs": {"div": 5, "num_date": {"value": 2020.214390037386, "confidence": [2020.152712968628, 2020.2838165846522]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000409", "node_attrs": {"div": 6, "num_date": {"value": 2020.4106360043254, "confidence": [2020.2145645485787, 2020.626879907689]}}, "branch_attrs": {"mutations": {"nuc": ["T23443C"]}}, "children": [{"name": "Colombia/UW20112858902/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.9084699453551, "confidence": [2020.9084699453551, 2020.9084699453551]}, "tsne_y": {"value": -10.623948353207124}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.420"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.2397646304590681}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.021111938917878}, "tsne_x": {"value": -8.916061431369513}, "mds3": {"value": 2.650797725295506}, "umap_x": {"value": 7.5133495}, "pca2": {"value": 30.418035821715304}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.479627355973324}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.992253}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3483A", "G6446A", "T10107C", "C11471T", "G12516T", "C17518T", "C20703T", "G28842T"]}}}, {"name": "NODE_0000410", "node_attrs": {"div": 7, "num_date": {"value": 2020.5122760857223, "confidence": [2020.290897388727, 2020.68192514135]}}, "branch_attrs": {"mutations": {"nuc": ["C29733T"]}}, "children": [{"name": "Colombia/UW20112636836/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.9030054644809, "confidence": [2020.9030054644809, 2020.9030054644809]}, "tsne_y": {"value": -10.637311625082274}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.420"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.8973543857643245}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.026445486572923}, "tsne_x": {"value": -9.001009194690228}, "mds3": {"value": 3.943022557094781}, "umap_x": {"value": 7.511266}, "pca2": {"value": 30.42276226499033}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -12.759697211755924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.567278}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2644T", "C18647T", "T24733A", "C25844T", "C28087A", "G28328A", "A28523G"]}}}, {"name": "Colombia/UW20111061542/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8592896174864, "confidence": [2020.8592896174864, 2020.8592896174864]}, "tsne_y": {"value": -10.624372417133102}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.420"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.63756475148194}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.98653683408287}, "tsne_x": {"value": -8.863276377460005}, "mds3": {"value": -0.8014409404261317}, "umap_x": {"value": 7.828728}, "pca2": {"value": 30.48263001200548}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 13.72040909307202}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.607671}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1361A", "C2695T", "G3606T", "A4783G", "C5784T", "C10450T", "G16945A", "C16989T", "C22097T", "T26999C", "G28089-", "G28090-", "T28091-", "T28092-", "C28093-", "T28094-"], "S": ["L179F"]}, "labels": {"aa": "S: L179F"}}}]}]}, {"name": "NODE_0000419", "node_attrs": {"div": 6, "num_date": {"value": 2020.2366728072539, "confidence": [2020.2019020696093, 2020.2991754148206]}}, "branch_attrs": {"mutations": {"nuc": ["C28854T"]}}, "children": [{"name": "NODE_0000659", "node_attrs": {"div": 6, "num_date": {"value": 2020.2796959033, "confidence": [2020.1944734124793, 2020.3120996908228]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000660", "node_attrs": {"div": 6, "num_date": {"value": 2020.2978897421074, "confidence": [2020.1997001379016, 2020.3253071707957]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5241/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3265027322404, "confidence": [2020.3265027322404, 2020.3265027322404]}, "tsne_y": {"value": -11.667649026790675}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.421677533240566}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.01096851278387}, "tsne_x": {"value": -8.448926087219128}, "mds3": {"value": 2.4709490136236347}, "umap_x": {"value": 7.4608483}, "pca2": {"value": -5.973947793940593}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.0613899334643304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.834606}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C12741A"]}}}, {"name": "NODE_0000661", "node_attrs": {"div": 6, "num_date": {"value": 2020.3266430053309, "confidence": [2020.1766267396397, 2020.3690261178767]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LR963380", "node_attrs": {"div": 9, "num_date": {"value": 2020.4166666666667, "confidence": [2020.4166666666667, 2020.4166666666667]}, "tsne_y": {"value": -11.850123364545668}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Zimbabwe"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.245026928351499}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 3.2308034897122235}, "tsne_x": {"value": -8.556174220843998}, "mds3": {"value": 4.803109279744657}, "umap_x": {"value": 7.4216337}, "pca2": {"value": -1.983140060101352}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.292444307537996}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.729448}, "country": {"value": "Zimbabwe"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["T18920C", "C21005T", "A27507G"]}}}, {"name": "NODE_0000431", "node_attrs": {"div": 8, "num_date": {"value": 2020.4653478263876, "confidence": [2020.281003708217, 2020.5838903782367]}}, "branch_attrs": {"mutations": {"nuc": ["C18486T", "T22162C"]}}, "children": [{"name": "USA/JDZQ/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8237704918033, "confidence": [2020.8237704918033, 2020.8237704918033]}, "tsne_y": {"value": -11.2918610898565}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.240"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Alabama"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.712331298563452}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.923008719886646}, "tsne_x": {"value": -9.542295372335248}, "mds3": {"value": 7.5771053916266675}, "umap_x": {"value": 7.7648034}, "pca2": {"value": -0.2503442357396703}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.5930533056370177}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.576438}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C313T", "C920T", "G1181T", "T13162C", "G17122T", "G24926T", "G25757T", "C28849T"], "S": ["V1122L"]}, "labels": {"aa": "S: V1122L"}}}, {"name": "USA/TG808405/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_y": {"value": -11.662624500290304}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.240"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 0.4830343724826619}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 47.94919996878135}, "tsne_x": {"value": -9.025516282320654}, "mds3": {"value": -1.3137956005454123}, "umap_x": {"value": 7.4364433}, "pca2": {"value": -0.9147775558358712}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.3528181215189785}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.351267}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2334T", "C12049T", "T15399C", "G24872T"], "S": ["V1104L"]}, "labels": {"aa": "S: V1104L"}}}]}]}]}, {"name": "NODE_0000435", "node_attrs": {"div": 7, "num_date": {"value": 2020.3224290054288, "confidence": [2020.2707880041123, 2020.3300029331308]}}, "branch_attrs": {"mutations": {"nuc": ["T24076C"]}}, "children": [{"name": "USA/CA-QDX-214/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3319672131147, "confidence": [2020.3319672131147, 2020.3319672131147]}, "tsne_y": {"value": -11.848059877362996}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.5594173168094263}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -3.9239864913400218}, "tsne_x": {"value": -8.521528200512847}, "mds3": {"value": 2.047514098087841}, "umap_x": {"value": 7.452269}, "pca2": {"value": -0.2536826331252554}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.534593715209988}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.619118}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G24050C"], "S": ["D830H"]}, "labels": {"aa": "S: D830H"}}}, {"name": "NODE_0000618", "node_attrs": {"div": 7, "num_date": {"value": 2020.3342977449493, "confidence": [2020.3024192517187, 2020.389344262295]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Mexico/BCN-SEARCH-102982/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.389344262295, "confidence": [2020.389344262295, 2020.389344262295]}, "tsne_y": {"value": -11.941836742703764}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Baja California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.012342356898975}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.183023174861655}, "tsne_x": {"value": -8.540986634544067}, "mds3": {"value": 0.9814752229765582}, "umap_x": {"value": 7.431885}, "pca2": {"value": 23.88719732607313}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.018030132982688}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.16651}, "country": {"value": "Mexico"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C2306T", "T27634-", "C27635-", "A27636-"]}}}, {"name": "NODE_0000619", "node_attrs": {"div": 7, "num_date": {"value": 2020.3835208956875, "confidence": [2020.2932406532343, 2020.5591428178552]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-4102/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.6407103825136, "confidence": [2020.6407103825136, 2020.6407103825136]}, "tsne_y": {"value": -12.306973048874308}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.5888567020397111}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.041428615923892}, "tsne_x": {"value": -8.579879175774568}, "mds3": {"value": 3.336058040995783}, "umap_x": {"value": 7.499851}, "pca2": {"value": -10.885878505608664}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -9.698824196757013}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.301404}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1594T", "C5672T", "C20099T", "C20759T", "T25159C", "C25611T"]}}}, {"name": "NODE_0000438", "node_attrs": {"div": 10, "num_date": {"value": 2020.7000525968188, "confidence": [2020.4743894291662, 2020.8417969054829]}}, "branch_attrs": {"mutations": {"nuc": ["C10741T", "C23604A", "T29710C"], "S": ["P681H"]}, "labels": {"aa": "S: P681H"}}, "children": [{"name": "USA/NJ-CDC-LC0002673/2021", "node_attrs": {"div": 19, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_y": {"value": -12.687803118377508}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Jersey"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.099863581667072}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.997533479434752}, "tsne_x": {"value": -8.450496266017726}, "mds3": {"value": 4.063141532728772}, "umap_x": {"value": 7.8840737}, "pca2": {"value": 14.933252639993444}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -17.51341848615778}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.580392}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1578C", "T4092G", "C4891T", "G6618A", "C7765T", "A7833C", "C12076T", "A14613G", "G29266A"]}}}, {"name": "USA/TG707021/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_y": {"value": -12.51829026031919}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.243"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 2.61170347816312}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 13.024326700080318}, "tsne_x": {"value": -8.489993860219226}, "mds3": {"value": 2.441429603737701}, "umap_x": {"value": 7.4962263}, "pca2": {"value": -13.851204374350209}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.087863195447795}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.433524}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C12115T", "G24197T", "A27250C"], "S": ["A879S"]}, "labels": {"aa": "S: A879S"}}}]}]}]}]}]}, {"name": "NODE_0000622", "node_attrs": {"div": 6, "num_date": {"value": 2020.2782082007313, "confidence": [2020.193744273457, 2020.3013347161027]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000423", "node_attrs": {"div": 8, "num_date": {"value": 2020.3073770491803, "confidence": [2020.2836235368422, 2020.3073770491803]}}, "branch_attrs": {"mutations": {"nuc": ["C355T", "C4093T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5164/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3073770491803, "confidence": [2020.3073770491803, 2020.3073770491803]}, "tsne_y": {"value": -11.754628262473087}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.381"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.1861846904742825}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -4.239621526879525}, "tsne_x": {"value": -8.678525369225346}, "mds3": {"value": 3.258638351611274}, "umap_x": {"value": 7.4987435}, "pca2": {"value": -2.232962720496285}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.543385003551744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 17.233854}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000625", "node_attrs": {"div": 8, "num_date": {"value": 2020.3077803026472, "confidence": [2020.2852253910867, 2020.3653442239136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-6111/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4795081967213, "confidence": [2020.4795081967213, 2020.4795081967213]}, "tsne_y": {"value": -11.884739318857422}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.381"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.294278004200452}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.544104986632853}, "tsne_x": {"value": -9.057673832551382}, "mds3": {"value": 6.3287979441143145}, "umap_x": {"value": 7.5334706}, "pca2": {"value": -3.949645548104333}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -11.075715267256191}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.592538}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G5017T", "A8436G", "A9082G", "C11530A", "C16568T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-1925/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.6516393442623, "confidence": [2020.6516393442623, 2020.6516393442623]}, "tsne_y": {"value": -11.64944251830589}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.381"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.3576322869350606}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.928117694115836}, "tsne_x": {"value": -9.67619639196801}, "mds3": {"value": 5.270915054862208}, "umap_x": {"value": 8.031767}, "pca2": {"value": -14.079971123928711}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -20.4265577830724}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.179179}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5144T", "C8917T", "C11095T", "C20844T", "C25782T", "G26690T", "G28027T", "G28950A", "C29085T", "C29482T", "C29679T"]}}}]}]}, {"name": "NODE_0000627", "node_attrs": {"div": 6, "num_date": {"value": 2020.2877809982044, "confidence": [2020.2016733350538, 2020.3271749259277]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5557/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3510928961748, "confidence": [2020.3510928961748, 2020.3510928961748]}, "tsne_y": {"value": -11.808938880323891}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.405950601697981}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -6.4530679175879095}, "tsne_x": {"value": -8.599385518534103}, "mds3": {"value": 2.266262283082101}, "umap_x": {"value": 7.535712}, "pca2": {"value": -9.57889516817007}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.7622315198718392}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.999422}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["C6633T", "G23311T", "C26060T"], "S": ["E583D"]}, "labels": {"aa": "S: E583D"}}}, {"name": "NODE_0000630", "node_attrs": {"div": 6, "num_date": {"value": 2020.3261981472942, "confidence": [2020.2518314896427, 2020.5068285119742]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000631", "node_attrs": {"div": 6, "num_date": {"value": 2020.3670490872805, "confidence": [2020.2506144488148, 2020.5098836392779]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NM-UNM-TC222473/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6188524590164, "confidence": [2020.6188524590164, 2020.6188524590164]}, "tsne_y": {"value": -11.449585398812438}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.143073076422676}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.106849271379387}, "tsne_x": {"value": -9.189410682999798}, "mds3": {"value": -1.516677974771815}, "umap_x": {"value": 7.5409}, "pca2": {"value": 13.455098468083497}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.838505917153064}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.25276}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C853T", "G1055T", "G5305A", "C7029T", "C14599T", "G23868T", "C25469T", "C25904T", "G29140T"], "S": ["G769V"]}, "labels": {"aa": "S: G769V"}}}, {"name": "NODE_0000441", "node_attrs": {"div": 9, "num_date": {"value": 2020.5697295843265, "confidence": [2020.4314462538898, 2020.6762518167861]}}, "branch_attrs": {"mutations": {"nuc": ["G2258A", "A6441G", "C8140T"]}}, "children": [{"name": "USA/0-57799-3/2021", "node_attrs": {"div": 14, "num_date": {"value": 2021.058904109589, "confidence": [2021.058904109589, 2021.058904109589]}, "tsne_y": {"value": -12.738747456218542}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tennessee"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.101025076134853}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.1457140358161775}, "tsne_x": {"value": -9.219373790270469}, "mds3": {"value": 0.9406304274317464}, "umap_x": {"value": 7.5069194}, "pca2": {"value": -1.661150534925348}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.073933720945762}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.993287}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G4300T", "T9875C", "T23599A", "T25556G", "G28895T"], "S": ["N679K"]}, "labels": {"aa": "S: N679K"}}}, {"name": "NODE_0000442", "node_attrs": {"div": 11, "num_date": {"value": 2020.6321132660828, "confidence": [2020.526851500247, 2020.7152704585408]}}, "branch_attrs": {"mutations": {"nuc": ["A9204G", "C29445T"]}}, "children": [{"name": "USA/CA-CZB-16032/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_y": {"value": -13.068950229328465}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.395040060839342}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.820992014881423}, "tsne_x": {"value": -9.427937208042064}, "mds3": {"value": 3.3297807268347053}, "umap_x": {"value": 7.8281794}, "pca2": {"value": -5.284880630274725}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.895336613532773}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.489369}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1495T", "C2197T", "C4927T", "C17678T", "C19374T", "G26062T"]}}}, {"name": "NODE_0000443", "node_attrs": {"div": 12, "num_date": {"value": 2020.6718632017999, "confidence": [2020.5852487591355, 2020.7250079747728]}}, "branch_attrs": {"mutations": {"nuc": ["G29384T"]}}, "children": [{"name": "USA/WA-CDC-4010404-001/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_y": {"value": -13.076334944496857}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.762330050757487}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.508042289471385}, "tsne_x": {"value": -9.435152615664906}, "mds3": {"value": 7.569149565953217}, "umap_x": {"value": 7.704307}, "pca2": {"value": -8.409342036386738}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.3920492686105866}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.733913}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3382T", "G7100A", "C23997T"], "S": ["P812L"]}, "labels": {"aa": "S: P812L"}}}, {"name": "NODE_0000638", "node_attrs": {"div": 12, "num_date": {"value": 2020.6998273041215, "confidence": [2020.577573249748, 2020.733606557377]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TG960579/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_y": {"value": -12.973205590237397}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -3.298758594100705}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 43.82332778181646}, "tsne_x": {"value": -9.372918544749002}, "mds3": {"value": -0.3144735788804217}, "umap_x": {"value": 7.4618206}, "pca2": {"value": -12.259763020559486}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.749633535820096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.553087}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000639", "node_attrs": {"div": 12, "num_date": {"value": 2020.7196641569096, "confidence": [2020.5754973395055, 2020.7667163250196]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/0-49857-3/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_y": {"value": -13.140805954551231}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tennessee"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.313802026680169}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 15.187440011130406}, "tsne_x": {"value": -9.46863668596902}, "mds3": {"value": 0.8696482169015679}, "umap_x": {"value": 7.970336}, "pca2": {"value": -2.1309138970358323}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -18.4925911023328}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.489121}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A2317T", "A3469C", "C10038T", "G13448A", "G21850A", "C23202T", "C27970T"], "S": ["T547I"]}, "labels": {"aa": "S: T547I"}}}, {"name": "NODE_0000640", "node_attrs": {"div": 12, "num_date": {"value": 2020.7427025184725, "confidence": [2020.5784284532967, 2020.788865417309]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/JEGH/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8401639344263, "confidence": [2020.8401639344263, 2020.8401639344263]}, "tsne_y": {"value": -13.082553739630134}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Alabama"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.21544493262645}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.916147606008279}, "tsne_x": {"value": -9.436634897666137}, "mds3": {"value": 1.3773703714901393}, "umap_x": {"value": 7.5307884}, "pca2": {"value": -0.247302999877319}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.150449599577668}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.531127}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1738T", "C26873T", "C29503T"]}}}, {"name": "USA/KS-CDC-LC0008596/2021", "node_attrs": {"div": 20, "num_date": {"value": 2021.0506849315068, "confidence": [2021.0506849315068, 2021.0506849315068]}, "tsne_y": {"value": -13.158752844966758}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.234"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kansas"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.78422386930535}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.103472238232153}, "tsne_x": {"value": -9.494891454930263}, "mds3": {"value": 0.9754448585989552}, "umap_x": {"value": 8.262225}, "pca2": {"value": 13.744445294559103}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.06004124060245}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.661773}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3177T", "C10030T", "C11950T", "C18395T", "T18398C", "C20132T", "A26045G", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "G29195T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000642", "node_attrs": {"div": 6, "num_date": {"value": 2020.4085610745844, "confidence": [2020.225602206693, 2020.6012837835003]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000432", "node_attrs": {"div": 8, "num_date": {"value": 2020.5896269046148, "confidence": [2020.432330469778, 2020.7123788038923]}}, "branch_attrs": {"mutations": {"nuc": ["G17790T", "T22297C", "C29870A"]}}, "children": [{"name": "USA/MT-Chang-42104/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.76912568306, "confidence": [2020.76912568306, 2020.76912568306]}, "tsne_y": {"value": -12.086312101378772}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 0.4830598074662675}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 43.88453440145085}, "tsne_x": {"value": -9.285401227235097}, "mds3": {"value": -1.0610427622309393}, "umap_x": {"value": 7.470605}, "pca2": {"value": -9.158258471763698}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.691990398786311}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.299433}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3261T", "A6737G", "C7764T", "G28027T"]}}}, {"name": "NODE_0000433", "node_attrs": {"div": 11, "num_date": {"value": 2020.7608564032205, "confidence": [2020.6920698795946, 2020.801912568306]}}, "branch_attrs": {"mutations": {"nuc": ["C19097T", "A22034C"]}}, "children": [{"name": "USA/MT-UMGC-00304/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.9986338797814, "confidence": [2020.9986338797814, 2020.9986338797814]}, "tsne_y": {"value": -12.075333789321602}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Montana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.000546224223218}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.103181837169997}, "tsne_x": {"value": -9.475545417017385}, "mds3": {"value": -0.8867733985320789}, "umap_x": {"value": 7.4879923}, "pca2": {"value": -9.122722954106386}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 5.380345877331334}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.338667}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G19824T", "C29095T", "C29537T"]}}}, {"name": "USA/MT-UMGC-04846/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.801912568306, "confidence": [2020.801912568306, 2020.801912568306]}, "tsne_y": {"value": -12.044036796752067}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Montana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.349972734784202}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 4.1779033607380525}, "tsne_x": {"value": -9.302221588592236}, "mds3": {"value": 1.0389800864012213}, "umap_x": {"value": 7.5979953}, "pca2": {"value": -14.453575105431414}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.709771847752394}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.466496}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G23522C"], "S": ["E654Q"]}, "labels": {"aa": "S: E654Q"}}}]}]}, {"name": "NODE_0000645", "node_attrs": {"div": 6, "num_date": {"value": 2020.4571705330034, "confidence": [2020.2219559885884, 2020.5983837132223]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-13789/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.7281420765028, "confidence": [2020.7281420765028, 2020.7281420765028]}, "tsne_y": {"value": -12.247112470080008}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.6756596821726508}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 2.22083663434943}, "tsne_x": {"value": -8.266863580629396}, "mds3": {"value": 3.809293168377952}, "umap_x": {"value": 7.5333734}, "pca2": {"value": -6.707769277894833}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -8.903472172589241}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.404897}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G4207T", "G13723T", "G18583T", "C20762T", "C24466T", "C29514T"]}}}, {"name": "NODE_0000646", "node_attrs": {"div": 6, "num_date": {"value": 2020.462008662429, "confidence": [2020.2293277341566, 2020.6089353384866]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000647", "node_attrs": {"div": 6, "num_date": {"value": 2020.4760600478746, "confidence": [2020.2319983986902, 2020.6177363475745]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Colombia/UW20112706240/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.905737704918, "confidence": [2020.905737704918, 2020.905737704918]}, "tsne_y": {"value": -11.301611980924868}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.732173531558239}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.017435394987276}, "tsne_x": {"value": -9.137817016193518}, "mds3": {"value": 4.605618859781462}, "umap_x": {"value": 8.311226}, "pca2": {"value": 30.4229578802556}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -24.045560810015505}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.707309}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3483A", "C7006T", "C7528T", "G9479T", "C10156T", "C10969T", "G11670A", "C12085T", "C14183T", "C14724T", "T23443C", "C24442T", "C25658T", "C26111T", "C27306T"]}}}, {"name": "USA/SEARCH-9462/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.9467213114754, "confidence": [2020.9467213114754, 2020.9467213114754]}, "tsne_y": {"value": -11.166593403490008}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.561"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -4.3184454819525655}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 23.145175506187176}, "tsne_x": {"value": -9.438078146650604}, "mds3": {"value": 6.724413826729051}, "umap_x": {"value": 8.408206}, "pca2": {"value": -13.619803434549311}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -24.78388222748932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.536814}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C936T", "C1392T", "G2516T", "A5999G", "A10323G", "C10798T", "C11866T", "C13378T", "C18693T", "C19164T", "G21974T", "C24031T", "C25521T", "T25577C", "C27610T", "G28975T"], "S": ["D138Y"]}, "labels": {"aa": "S: D138Y"}}}]}, {"name": "NODE_0000421", "node_attrs": {"div": 16, "num_date": {"value": 2020.8344842100064, "confidence": [2020.7677411088894, 2020.8803717462886]}}, "branch_attrs": {"mutations": {"nuc": ["T5804C", "C5849T", "C6285T", "C6706T", "C16092T", "C17898T", "G26325A", "G27987T", "C28291T", "G29825T"]}}, "children": [{"name": "USA/CA-CZB-15007/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8811475409836, "confidence": [2020.8811475409836, 2020.8811475409836]}, "tsne_y": {"value": -12.10555011960895}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.232"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.02619897397085}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.472146038634337}, "tsne_x": {"value": -10.399373520251538}, "mds3": {"value": 6.7761671686956255}, "umap_x": {"value": 7.839688}, "pca2": {"value": -4.227809555125756}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.3998822127153137}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.406263}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G185T"]}}}, {"name": "USA/CA-CDPH-2000006523/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.941256830601, "confidence": [2020.941256830601, 2020.941256830601]}, "tsne_y": {"value": -12.114530668951422}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.232"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.126053254938567}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.636580344588785}, "tsne_x": {"value": -10.418384260909692}, "mds3": {"value": 8.046196490673168}, "umap_x": {"value": 8.060987}, "pca2": {"value": -16.67176422957635}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -20.700175893282392}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.950246}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3341G", "C3787T", "C5512T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000374", "node_attrs": {"div": 5, "num_date": {"value": 2020.1680421104409, "confidence": [2019.9364723594847, 2020.3501397321286]}}, "branch_attrs": {"mutations": {"nuc": ["T26767C"]}}, "children": [{"name": "NODE_0000375", "node_attrs": {"div": 6, "num_date": {"value": 2020.3261412588988, "confidence": [2020.055433025069, 2020.4061656309725]}}, "branch_attrs": {"mutations": {"nuc": ["C28887T"]}}, "children": [{"name": "KEN/C17469/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4494535519125, "confidence": [2020.4494535519125, 2020.4494535519125]}, "tsne_y": {"value": -10.892784874738512}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -2.729659623636607}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": 39.45397641077991}, "tsne_x": {"value": -7.8137953304225185}, "mds3": {"value": 1.76790410865961}, "umap_x": {"value": 7.5677423}, "pca2": {"value": 0.7482010891184274}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.8279360195732937}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 18.060978}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["G14584A", "C17285T"]}}}, {"name": "NODE_0000376", "node_attrs": {"div": 25, "num_date": {"value": 2020.8838514855613, "confidence": [2020.7507202835495, 2020.9595467206743]}}, "branch_attrs": {"mutations": {"nuc": ["C1498T", "A1807G", "G2659A", "C6285T", "T8593C", "C9565T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "C14407T", "C18171T", "A20724G", "A21717G", "C21762T", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "T21992-", "A21993-", "T21994-", "G23012A", "G23593C", "T24224C", "C24748T", "C26305T", "T27205-", "T27206-", "T27207-", "C28278-", "T28279-", "G28280-", "C28308G", "A28699G", "G29543T", "T29728-", "T29729-", "C29730-", "A29731-", "C29732-", "C29733-", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-", "A29761-", "C29762-", "A29763-", "G29764-", "T29765-", "G29766-", "A29767-", "A29768-", "C29769-", "A29770-", "A29771-", "T29772-", "G29773-", "C29774-", "A29776-"], "S": ["Q52R", "A67V", "I68X", "H69-", "V70X", "Y144-", "E484K", "Q677H", "F888L", "*1274X"]}, "labels": {"aa": "S: Q52R, A67V, I68X, H69-, V70X, Y144-, E484K, Q677H, F888L, *1274X"}}, "children": [{"name": "NGA/CV865/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.0780821917808, "confidence": [2021.0780821917808, 2021.0780821917808]}, "tsne_y": {"value": -16.575536029042272}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -38.413001293295885}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.65750925838129}, "tsne_x": {"value": -11.658186159427446}, "mds3": {"value": -1.4586045211962968}, "umap_x": {"value": 8.825202}, "pca2": {"value": -11.73550130130969}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 4.093534590888094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.449193}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T27792-", "-29728G", "-29776T"]}}}, {"name": "NODE_0000377", "node_attrs": {"div": 25, "num_date": {"value": 2020.8900888217686, "confidence": [2020.7593326136769, 2020.9678581457224]}}, "branch_attrs": {"mutations": {"nuc": ["T29775-"]}}, "children": [{"name": "NODE_0000381", "node_attrs": {"div": 26, "num_date": {"value": 2020.9510949368369, "confidence": [2020.8115093473327, 2020.9845412565337]}}, "branch_attrs": {"mutations": {"nuc": ["C3267T"]}}, "children": [{"name": "NGA/BCVL-18921/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.0123287671233, "confidence": [2021.0123287671233, 2021.0123287671233]}, "tsne_y": {"value": -16.57647063843247}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.220093587748354}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.207581437722984}, "tsne_x": {"value": -11.657641507572617}, "mds3": {"value": 7.724474433758494}, "umap_x": {"value": 8.816787}, "pca2": {"value": 5.805968933028932}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -36.78251531479381}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.429102}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G521T"]}}}, {"name": "NODE_0000654", "node_attrs": {"div": 26, "num_date": {"value": 2020.9701541167901, "confidence": [2020.8144489517667, 2020.9935185661298]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-24746/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.1712328767123, "confidence": [2021.1712328767123, 2021.1712328767123]}, "tsne_y": {"value": -16.57643242888048}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.876073961067993}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.208369065149808}, "tsne_x": {"value": -11.658897969619384}, "mds3": {"value": 9.854411808279332}, "umap_x": {"value": 8.831752}, "pca2": {"value": 5.803198544169928}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -39.67965024439357}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.450845}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5512T", "T8296C", "C9615T", "C23179T", "T28039C"]}}}, {"name": "NGA/BCVL-18900/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.0150684931507, "confidence": [2021.0150684931507, 2021.0150684931507]}, "tsne_y": {"value": -16.577052178365143}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.763649914546575}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 6.713616193353134}, "tsne_x": {"value": -11.65720147308162}, "mds3": {"value": 8.45711219490798}, "umap_x": {"value": 8.805573}, "pca2": {"value": 2.742450520335026}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -39.74733027693951}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.439936}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C15752T", "C25047T", "G25650T"], "S": ["P1162L"]}, "labels": {"aa": "S: P1162L"}}}]}]}, {"name": "NODE_0000655", "node_attrs": {"div": 26, "num_date": {"value": 2020.9514415163426, "confidence": [2020.8127822555011, 2020.9705236455836]}}, "branch_attrs": {"mutations": {"nuc": ["C28A"]}}, "children": [{"name": "NODE_0000656", "node_attrs": {"div": 26, "num_date": {"value": 2020.9692376718535, "confidence": [2020.817587699171, 2020.9767759562842]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-21994/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0698630136985, "confidence": [2021.0698630136985, 2021.0698630136985]}, "tsne_y": {"value": -16.57541885969845}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.68462059047768}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -0.3780304571203786}, "tsne_x": {"value": -11.659050096065444}, "mds3": {"value": 4.1735963055152565}, "umap_x": {"value": 8.857867}, "pca2": {"value": 6.502429658160165}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -36.25392347329032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.499983}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G5029T", "C9891T", "C23595T", "G25249T", "G29027T", "G29348T"], "S": ["T678I", "M1229I"]}, "labels": {"aa": "S: T678I, M1229I"}}}, {"name": "NGA/CV672/2020", "node_attrs": {"div": 26, "num_date": {"value": 2020.9767759562842, "confidence": [2020.9767759562842, 2020.9767759562842]}, "tsne_y": {"value": -16.573188619614616}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.7290681126189655}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.920833710617647}, "tsne_x": {"value": -11.657694490160344}, "mds3": {"value": 5.92141929727628}, "umap_x": {"value": 8.760047}, "pca2": {"value": -4.114741845640631}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -35.937211821198524}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.506969}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000657", "node_attrs": {"div": 26, "num_date": {"value": 2020.969827350971, "confidence": [2020.808813260863, 2021.0154433508305]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MLI/MAL0140/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.2150684931507, "confidence": [2021.2150684931507, 2021.2150684931507]}, "tsne_y": {"value": -16.57798512073371}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Mopti Region"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.881577183399257}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.189298486215192}, "tsne_x": {"value": -11.65840408771586}, "mds3": {"value": 8.045957079966046}, "umap_x": {"value": 8.817881}, "pca2": {"value": 5.816889769878167}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -40.99860926281469}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.409778}, "country": {"value": "Mali"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1006T", "T1052C", "G8602T", "C11750T", "T15684C", "A22012T"], "S": ["K150N"]}, "labels": {"aa": "S: K150N"}}}, {"name": "GHA/nmimr-SARS-CoV-2-TRA-21-13715/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.204109589041, "confidence": [2021.204109589041, 2021.204109589041]}, "tsne_y": {"value": -16.574684428271375}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.525"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.984589000251518}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.8427570185918976}, "tsne_x": {"value": -11.656845902522306}, "mds3": {"value": 7.360659359455172}, "umap_x": {"value": 8.809555}, "pca2": {"value": 20.48472762859117}, "Nextstrain_clade": {"value": "21D (Eta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -37.3496745341017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.422527}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3483T", "C4890T", "G10997A", "G22205T", "A25038G", "A26392G", "C27011T", "G28960T"], "S": ["D215Y", "H1159R"]}, "labels": {"aa": "S: D215Y, H1159R"}}}]}]}]}]}]}, {"name": "NODE_0000373", "node_attrs": {"div": 13, "num_date": {"value": 2020.3641458296158, "confidence": [2020.1744581848557, 2020.5941905594764]}}, "branch_attrs": {"mutations": {"nuc": ["G210T", "T22917G", "C23604G", "C25469T", "T27638C", "A28271-", "G28881T", "G29402T", "G29742T"], "S": ["L452R", "P681R"]}, "labels": {"aa": "S: L452R, P681R"}}, "children": [{"name": "USA/CT-CDC-QDX23176345/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.2123287671234, "confidence": [2021.2123287671234, 2021.2123287671234]}, "tsne_y": {"value": -9.39160848962583}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Connecticut"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.659995672521845}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.776377202244466}, "tsne_x": {"value": -8.934951056136105}, "mds3": {"value": -18.21031184959909}, "umap_x": {"value": 11.044139}, "pca2": {"value": 0.0096823307633686}, "Nextstrain_clade": {"value": "21B (Kappa)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 14.926214538803304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.1631658}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C835T", "C3457T", "C4965T", "A11201G", "T15411C", "G16852T", "G17523T", "A20396G", "T20401G", "C21846T", "T21895C", "G21987A", "G22022A", "G23012C", "A24775T", "C26681T", "C26767G"], "S": ["T95I", "G142D", "E154K", "E484Q", "Q1071H"]}, "labels": {"aa": "S: T95I, G142D, E154K, E484Q, Q1071H"}}}, {"name": "NODE_0000308", "node_attrs": {"div": 20, "num_date": {"value": 2020.540976288964, "confidence": [2020.3614458411002, 2020.6871203239627]}}, "branch_attrs": {"mutations": {"nuc": ["G15451A", "C16466T", "C21618G", "A22029-", "G22030-", "T22031-", "T22032-", "C22033-", "A22034-", "C22995A", "G24410A", "C27752T", "G28248-", "A28249-", "T28250-", "T28251-", "T28252-", "C28253-", "A28461G"], "S": ["T19R", "E156X", "F157-", "R158X", "T478K", "D950N", "*1274X"]}, "labels": {"aa": "S: T19R, E156X, F157-, R158X, T478K, D950N, *1274X"}}, "children": [{"name": "NODE_0000309", "node_attrs": {"div": 24, "num_date": {"value": 2020.755786737649, "confidence": [2020.4892336746034, 2020.9703078970708]}}, "branch_attrs": {"mutations": {"nuc": ["C5184T", "C9891T", "T11418C", "G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000310", "node_attrs": {"div": 29, "num_date": {"value": 2020.999415359408, "confidence": [2020.7566483841147, 2021.1770168464207]}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "C1267T", "T12946C", "A20262G", "C27739T"]}}, "children": [{"name": "NODE_0000311", "node_attrs": {"div": 33, "num_date": {"value": 2021.105692854487, "confidence": [2020.9221361548505, 2021.2439837520064]}}, "branch_attrs": {"mutations": {"nuc": ["C6539T", "C20320T", "C24745T", "G29427A"]}}, "children": [{"name": "MNG/10011710/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.3109589041096, "confidence": [2021.3109589041096, 2021.3109589041096]}, "tsne_y": {"value": 6.03063933912222}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Mongolia"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.93564088640376}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -7.197091109695602}, "tsne_x": {"value": 16.192925075711084}, "mds3": {"value": -38.27267152612983}, "umap_x": {"value": 10.877281}, "pca2": {"value": -12.129967647630792}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -2.317027959129476}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.862094}, "country": {"value": "Mongolia"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A330G", "G2235A", "C4456T", "T5218C", "C5497T", "C11900T", "C25162A", "C26340T", "C27590T", "G29674A"]}}}, {"name": "NODE_0000312", "node_attrs": {"div": 35, "num_date": {"value": 2021.2098888165713, "confidence": [2021.0246681057138, 2021.3884040625958]}}, "branch_attrs": {"mutations": {"nuc": ["C9319T", "G28690T"]}}, "children": [{"name": "MWI/MLW00960/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5684931506848, "confidence": [2021.5684931506848, 2021.5684931506848]}, "tsne_y": {"value": 6.137400952292632}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Malawi"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.82074073923649}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.973691886177035}, "tsne_x": {"value": 16.348712267705253}, "mds3": {"value": -35.76643593983204}, "umap_x": {"value": 10.85384}, "pca2": {"value": 9.80497903766141}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -27.42458067209399}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.920343}, "country": {"value": "Malawi"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C1800T", "C7834T", "G13713T", "C22802A", "A25531G", "A26148G", "C27707A", "G28985T", "T29029C", "C29370T", "T29785C"], "S": ["Q414K"]}, "labels": {"aa": "S: Q414K"}}}, {"name": "NODE_0000668", "node_attrs": {"div": 35, "num_date": {"value": 2021.2791447520199, "confidence": [2021.0214129023534, 2021.3851491956073]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SLE/SL46/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4342465753425, "confidence": [2021.4342465753425, 2021.4342465753425]}, "tsne_y": {"value": 6.000735484292346}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Sierra Leone"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.82390580233701}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.047447831212036}, "tsne_x": {"value": 16.26393718235768}, "mds3": {"value": -36.08128270517821}, "umap_x": {"value": 10.881708}, "pca2": {"value": -9.478077283676472}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 1.3393401321310532}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.8178072}, "country": {"value": "Sierra Leone"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C66T", "C3448A", "G5164T", "C7392T", "G19117T", "-28252T", "-28253A"]}}}, {"name": "NODE_0000314", "node_attrs": {"div": 36, "num_date": {"value": 2021.3958521403372, "confidence": [2021.1801046874311, 2021.5804222089716]}}, "branch_attrs": {"mutations": {"nuc": ["A13482G"]}}, "children": [{"name": "THA/CONI-1166/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.63698630137, "confidence": [2021.63698630137, 2021.63698630137]}, "tsne_y": {"value": 6.058032859834281}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.30"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Tak"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.083796336898}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.185883859858624}, "tsne_x": {"value": 16.333128805529277}, "mds3": {"value": -36.80758205649025}, "umap_x": {"value": 10.858155}, "pca2": {"value": 15.544256905262166}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 3.6462326953726136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.8828087}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T3442C", "C14318T", "G17721T", "G20670A", "G24095T", "G25690T"], "S": ["A845S"]}, "labels": {"aa": "S: A845S"}}}, {"name": "NODE_0000670", "node_attrs": {"div": 36, "num_date": {"value": 2021.4920817617506, "confidence": [2021.1871162823181, 2021.609143339117]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/CONI-1199/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.817808219178, "confidence": [2021.817808219178, 2021.817808219178]}, "tsne_y": {"value": 6.010964457543474}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.30"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.46790714566768}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.186123137122934}, "tsne_x": {"value": 16.293655222628306}, "mds3": {"value": -35.39752429341556}, "umap_x": {"value": 10.908774}, "pca2": {"value": 15.54402511165454}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 5.497652181140511}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.7476041}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C4331T", "A4558G", "T16845C", "G25526T"]}}}, {"name": "THA/CONI-1103/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7246575342465, "confidence": [2021.7246575342465, 2021.7246575342465]}, "tsne_y": {"value": 6.045037409905038}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.30"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.08304451926212}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.146234807231276}, "tsne_x": {"value": 16.31162878429169}, "mds3": {"value": -36.39015117722934}, "umap_x": {"value": 10.846009}, "pca2": {"value": 15.029825588956092}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -3.1576757711338828}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.8800044}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C854T", "C20104T", "T20329C", "C21304A", "G21305A", "G27047A", "T27227C"]}}}]}]}]}]}]}, {"name": "NODE_0000316", "node_attrs": {"div": 30, "num_date": {"value": 2021.1074903591812, "confidence": [2020.951667243799, 2021.2693206735948]}}, "branch_attrs": {"mutations": {"nuc": ["C18176T"]}}, "children": [{"name": "NODE_0000318", "node_attrs": {"div": 31, "num_date": {"value": 2021.1874720973167, "confidence": [2021.0351574100712, 2021.3141184191793]}}, "branch_attrs": {"mutations": {"nuc": ["A25562G"]}}, "children": [{"name": "NZL/21MV0483/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4150684931508, "confidence": [2021.4150684931508, 2021.4150684931508]}, "tsne_y": {"value": 5.63878386149556}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.580925150606774}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 8.792644950128203}, "tsne_x": {"value": 16.089938996536258}, "mds3": {"value": -29.16598144705081}, "umap_x": {"value": 11.019243}, "pca2": {"value": 2.191535041814442}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -14.629754917264112}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4308739}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C3156T", "C20703T", "T23907A", "A27377G", "G28086T"], "S": ["F782Y"]}, "labels": {"aa": "S: F782Y"}}}, {"name": "CHN/6176/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4150684931508, "confidence": [2021.4150684931508, 2021.4150684931508]}, "tsne_y": {"value": 5.654058765716088}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Guangdong"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.643489782571308}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.656018030597176}, "tsne_x": {"value": 16.095947649449627}, "mds3": {"value": -31.924805258216526}, "umap_x": {"value": 10.920251}, "pca2": {"value": -8.189880554207841}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 4.884753325651392}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.539022}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T6023C", "C9598T", "A21137G", "G25088T", "C27092T"], "S": ["V1176F"]}, "labels": {"aa": "S: V1176F"}}}]}, {"name": "NODE_0000675", "node_attrs": {"div": 30, "num_date": {"value": 2021.1324752607288, "confidence": [2020.958170119728, 2021.271199618912]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0410/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.3383561643836, "confidence": [2021.3383561643836, 2021.3383561643836]}, "tsne_y": {"value": 5.639777629608041}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.886455642622916}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 8.786367689808639}, "tsne_x": {"value": 16.09194121563606}, "mds3": {"value": -30.13442288850408}, "umap_x": {"value": 10.933642}, "pca2": {"value": 2.1773720757031296}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 3.583283194867744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4219787}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C2841T", "C6926T", "C10450T", "T19866C", "T24984G", "G26428T"], "S": ["L1141W"]}, "labels": {"aa": "S: L1141W"}}}, {"name": "NODE_0000677", "node_attrs": {"div": 30, "num_date": {"value": 2021.1856149776636, "confidence": [2021.054263089667, 2021.2845202179808]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000321", "node_attrs": {"div": 31, "num_date": {"value": 2021.2588659152725, "confidence": [2021.1461643485943, 2021.2945205479452]}}, "branch_attrs": {"mutations": {"nuc": ["C11455T"]}}, "children": [{"name": "IND/INSACOG-GBRC1488/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_y": {"value": 5.637213232737055}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.297692363958944}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.068997001429677}, "tsne_x": {"value": 16.072342586368045}, "mds3": {"value": -29.302128663704003}, "umap_x": {"value": 11.044374}, "pca2": {"value": -3.120724076198325}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 3.6271512903454535}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4038763}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "A7782C", "A24410G", "C29545T", "G29587A"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "IND/GBRC732a/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.2945205479452, "confidence": [2021.2945205479452, 2021.2945205479452]}, "tsne_y": {"value": 5.605232334810372}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.805958422458732}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.087680148091757}, "tsne_x": {"value": 16.011455590523067}, "mds3": {"value": -25.86949088198384}, "umap_x": {"value": 11.005757}, "pca2": {"value": -3.12421074406481}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -17.986753919347723}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.1942005}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G20467A"]}}}]}, {"name": "NODE_0000679", "node_attrs": {"div": 30, "num_date": {"value": 2021.2070369010319, "confidence": [2021.0597644487314, 2021.3338210256677]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000684", "node_attrs": {"div": 30, "num_date": {"value": 2021.2309160267853, "confidence": [2021.0615408093227, 2021.339243090945]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC777/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3657534246574, "confidence": [2021.3657534246574, 2021.3657534246574]}, "tsne_y": {"value": 5.626443164216859}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.82152558928739}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.003791154325045}, "tsne_x": {"value": 16.048493572511227}, "mds3": {"value": -30.887935204581165}, "umap_x": {"value": 10.954089}, "pca2": {"value": -3.115183524525728}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 5.497773479940247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4185448}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G2293A", "C3397T", "A27712T", "C28354T"]}}}, {"name": "NODE_0000323", "node_attrs": {"div": 35, "num_date": {"value": 2021.4635414555944, "confidence": [2021.4030538919906, 2021.4890410958903]}}, "branch_attrs": {"mutations": {"nuc": ["T1877G", "G10870T", "C19160T", "G20718T", "A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "USA/SARS00034415/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4890410958903, "confidence": [2021.4890410958903, 2021.4890410958903]}, "tsne_y": {"value": 5.635218562187403}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.31614213594502}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.486549509638219}, "tsne_x": {"value": 16.097391135432638}, "mds3": {"value": -28.46616524147089}, "umap_x": {"value": 11.013657}, "pca2": {"value": -5.564463447560184}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -4.704825339742717}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.3563516}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G22436T"], "S": ["A292S"]}, "labels": {"aa": "S: A292S"}}}, {"name": "USA/CA-CDC-ASC210197467/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.6424657534246, "confidence": [2021.6424657534246, 2021.6424657534246]}, "tsne_y": {"value": 5.637568570444057}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.109714319106867}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 1.7318427562876777}, "tsne_x": {"value": 16.11357758379885}, "mds3": {"value": -30.086587711172125}, "umap_x": {"value": 11.007553}, "pca2": {"value": -6.933407820213803}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -7.454429934693503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.42434}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C10519T", "G17790T"]}}}]}]}, {"name": "NODE_0000324", "node_attrs": {"div": 31, "num_date": {"value": 2021.258886157818, "confidence": [2021.1132585579433, 2021.363612844375]}}, "branch_attrs": {"mutations": {"nuc": ["A18468G"]}}, "children": [{"name": "KEN/C97695/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.390410958904, "confidence": [2021.390410958904, 2021.390410958904]}, "tsne_y": {"value": 5.5746663157816085}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -10.071537066984412}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 25.98783057027497}, "tsne_x": {"value": 16.003907155750756}, "mds3": {"value": -24.039345596512344}, "umap_x": {"value": 11.100508}, "pca2": {"value": 9.664888767025092}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 2.0827398384923868}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0367677}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A3879G"]}}}, {"name": "NODE_0000687", "node_attrs": {"div": 31, "num_date": {"value": 2021.2815569415932, "confidence": [2021.114409532723, 2021.3648351643576]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000688", "node_attrs": {"div": 31, "num_date": {"value": 2021.3299323854806, "confidence": [2021.1214679381542, 2021.374128044419]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS778/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_y": {"value": 5.583054018121871}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.263208866605773}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 14.690203565234029}, "tsne_x": {"value": 15.994983757938622}, "mds3": {"value": -24.790956479253136}, "umap_x": {"value": 11.10236}, "pca2": {"value": 4.0747608259086805}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 0.8735250312575097}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0813444}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C5826T"]}}}, {"name": "KEN/C99414/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.4287671232876, "confidence": [2021.4287671232876, 2021.4287671232876]}, "tsne_y": {"value": 5.584258259210474}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.592784711694303}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 23.368422322993982}, "tsne_x": {"value": 16.0141118487563}, "mds3": {"value": -25.20812481105658}, "umap_x": {"value": 11.138346}, "pca2": {"value": 8.429179361897061}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 2.209703650876002}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0160825}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C8802T", "T11137C"]}}}]}, {"name": "NODE_0000689", "node_attrs": {"div": 31, "num_date": {"value": 2021.2970779765983, "confidence": [2021.1150080221357, 2021.368661680697]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-ASC210153762/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.472602739726, "confidence": [2021.472602739726, 2021.472602739726]}, "tsne_y": {"value": 5.6439181735559325}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.13"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -20.00796696653699}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.252117018355729}, "tsne_x": {"value": 16.141352499797662}, "mds3": {"value": -30.192366259796074}, "umap_x": {"value": 10.960367}, "pca2": {"value": -7.483032132855321}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -4.898376738430368}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.469209}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C9169T", "C10605A", "A15681G", "A17406G", "A21987G", "A22582C", "C29095T"], "S": ["D142G", "E340D"]}, "labels": {"aa": "S: D142G, E340D"}}}, {"name": "NODE_0000328", "node_attrs": {"div": 34, "num_date": {"value": 2021.3817449273402, "confidence": [2021.2648734905342, 2021.4738930161934]}}, "branch_attrs": {"mutations": {"nuc": ["G17019T", "T26076A", "G29744A"]}}, "children": [{"name": "KEN/SS2174/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5109589041097, "confidence": [2021.5109589041097, 2021.5109589041097]}, "tsne_y": {"value": 5.643669271670366}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.098589760499213}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 13.091549744210996}, "tsne_x": {"value": 16.151311266918352}, "mds3": {"value": -28.68085178447278}, "umap_x": {"value": 11.0452}, "pca2": {"value": 4.350425192106304}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 5.090427822742252}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.3378491}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T18042C", "A20019G", "G20443A"]}}}, {"name": "NODE_0000692", "node_attrs": {"div": 34, "num_date": {"value": 2021.4062365969278, "confidence": [2021.2650795432007, 2021.4767335969302]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS2179/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.5164383561644, "confidence": [2021.5164383561644, 2021.5164383561644]}, "tsne_y": {"value": 5.614392741219498}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -20.29744307502385}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 16.311665157774403}, "tsne_x": {"value": 16.15308782540621}, "mds3": {"value": -28.58016100228352}, "umap_x": {"value": 10.997311}, "pca2": {"value": 7.558175702537802}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -1.807549810029908}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4008424}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C2706T", "G3851A", "A11117G", "C19884T"]}}}, {"name": "NODE_0000693", "node_attrs": {"div": 34, "num_date": {"value": 2021.4206894378033, "confidence": [2021.2710476214734, 2021.4963078530338]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS8132/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6041095890412, "confidence": [2021.6041095890412, 2021.6041095890412]}, "tsne_y": {"value": 5.643310472552668}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.93070585458778}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -3.0935504022694054}, "tsne_x": {"value": 16.21375907030628}, "mds3": {"value": -33.57390202814401}, "umap_x": {"value": 10.863586}, "pca2": {"value": 2.5704910816017765}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 4.878282316506337}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.829556}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G5008T", "C11152T", "C12809T", "G18160A", "T22045C", "C27331T"]}}}, {"name": "KEN/SS3285/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_y": {"value": 5.61322828504657}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "1"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -15.232155337908136}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 21.377086822496963}, "tsne_x": {"value": 16.082594377205616}, "mds3": {"value": -27.721951790113724}, "umap_x": {"value": 11.050005}, "pca2": {"value": 28.127078376363496}, "Nextstrain_clade": {"value": "21A (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 6.128972217072451}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.199904}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C6638T", "G17679T", "G18394T"]}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000331", "node_attrs": {"div": 28, "num_date": {"value": 2020.9714294041075, "confidence": [2020.775696647491, 2021.1060094637915]}}, "branch_attrs": {"mutations": {"nuc": ["A5584G", "C11514T", "C13019T", "C22227T"], "S": ["A222V"]}, "labels": {"aa": "S: A222V"}}, "children": [{"name": "NODE_0000335", "node_attrs": {"div": 38, "num_date": {"value": 2021.2013698630137, "confidence": [2021.1721928938964, 2021.2013698630137]}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "C6354T", "A6458G", "T7666C", "A9650G", "C23896T", "G25273C", "C25702T", "T27385-", "A27386-", "A27387-", "A27388-", "C27389-", "G27390-", "A27391-", "A27392-", "C27393-", "A27394-", "T27395-", "G27396-", "A27397-", "A27398-", "A27399-", "A27400-", "T27401-", "G28373T", "G28703T"], "S": ["M1237I"]}, "labels": {"aa": "S: M1237I"}}, "children": [{"name": "NZL/21CV0234/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2013698630137, "confidence": [2021.2013698630137, 2021.2013698630137]}, "tsne_y": {"value": 4.543251713595753}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.24"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.45012832232091}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.46805066976421}, "tsne_x": {"value": 14.589032115722071}, "mds3": {"value": -29.294659599654395}, "umap_x": {"value": 10.930076}, "pca2": {"value": 12.530550978124722}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -23.04836468011895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.6899974}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0211/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.527397260274, "confidence": [2021.527397260274, 2021.527397260274]}, "tsne_y": {"value": 4.499853532913428}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.24"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.09103177223095}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.511110946653445}, "tsne_x": {"value": 14.49762349340558}, "mds3": {"value": -36.17715732422603}, "umap_x": {"value": 10.918018}, "pca2": {"value": 12.821475529733643}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 4.649979060866558}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.7755632}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A2360G", "T20100C", "-27385T", "-27386A", "-27387A", "-27388A", "-27389C", "-27390G", "-27391A", "-27392A", "-27393C", "-27394A", "-27395T", "-27396G", "-27397A", "-27398A", "-27399A", "-27400A", "-27401T"]}}}]}, {"name": "NODE_0000721", "node_attrs": {"div": 28, "num_date": {"value": 2021.0551100137445, "confidence": [2020.8822503852696, 2021.2794970024722]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000347", "node_attrs": {"div": 29, "num_date": {"value": 2021.1280124847724, "confidence": [2020.9450125511528, 2021.3331012335168]}}, "branch_attrs": {"mutations": {"nuc": ["G25352T"], "S": ["V1264L"]}, "labels": {"aa": "S: V1264L"}}, "children": [{"name": "NODE_0000697", "node_attrs": {"div": 29, "num_date": {"value": 2021.1869130590437, "confidence": [2020.9426131047487, 2021.3407997455852]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDPH-3000128587/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_y": {"value": 4.377126444396945}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.26"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.13750117986613}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.1981550526109865}, "tsne_x": {"value": 14.697957603626906}, "mds3": {"value": -33.49015421847461}, "umap_x": {"value": 10.898816}, "pca2": {"value": -5.815726909431951}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 6.785590080592772}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.7995727}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G510T", "A518G", "C999T", "T2911G", "G16158T", "T18750C", "G19669A", "A24783G", "A27345T", "A27368G", "G27593T", "C29870A"], "S": ["N1074S"]}, "labels": {"aa": "S: N1074S"}}}, {"name": "ZAF/SCV2-GS-G823/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.631506849315, "confidence": [2021.631506849315, 2021.631506849315]}, "tsne_y": {"value": 4.665913529493559}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.073248883386617}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 0.719345056165242}, "tsne_x": {"value": 15.049963994781375}, "mds3": {"value": -28.580717815384265}, "umap_x": {"value": 10.961589}, "pca2": {"value": 3.6502908362086046}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 3.040235077376084}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.2428808}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G7393T", "C13730T", "G20995T", "G23311C", "C28486T", "G29825A"], "S": ["E583D"]}, "labels": {"aa": "S: E583D"}}}]}, {"name": "NODE_0000349", "node_attrs": {"div": 32, "num_date": {"value": 2021.2526696509863, "confidence": [2021.1000685365796, 2021.3466255170833]}}, "branch_attrs": {"mutations": {"nuc": ["T13019C", "G14028T", "C27005T"]}}, "children": [{"name": "BHR/21090029425/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8643835616438, "confidence": [2021.8643835616438, 2021.8643835616438]}, "tsne_y": {"value": 4.301024398253175}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.77691071506831}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -3.647578603680218}, "tsne_x": {"value": 15.371545041328387}, "mds3": {"value": -33.89270164165637}, "umap_x": {"value": 10.9062}, "pca2": {"value": -1.6307976115688512}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -3.4948082413059227}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.7805164}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T1871G", "A2903G", "C4009T", "C6395T", "G22468T", "G26713T", "C26822T", "G27667T", "A28104C"]}}}, {"name": "NODE_0000350", "node_attrs": {"div": 33, "num_date": {"value": 2021.280870215395, "confidence": [2021.147593360642, 2021.3591312904073]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NODE_0000353", "node_attrs": {"div": 34, "num_date": {"value": 2021.3272889458885, "confidence": [2021.2212562997345, 2021.3609857062283]}}, "branch_attrs": {"mutations": {"nuc": ["G28461A"]}}, "children": [{"name": "BHR/342067030/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3657534246574, "confidence": [2021.3657534246574, 2021.3657534246574]}, "tsne_y": {"value": 4.471708171261557}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.032370305067946}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 4.870144209231001}, "tsne_x": {"value": 15.282530571706916}, "mds3": {"value": -22.45385058798925}, "umap_x": {"value": 11.069312}, "pca2": {"value": -7.097128296993971}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -6.518560258427062}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0678487}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G4504T", "A24410G", "-28252T", "G29540A"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "BHR/342279980/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_y": {"value": 4.660815203749413}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.517573160170066}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.032337754943982}, "tsne_x": {"value": 15.151093627795738}, "mds3": {"value": -24.775130157268432}, "umap_x": {"value": 11.116276}, "pca2": {"value": -8.347029360483045}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -7.961307958160289}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0075212}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C13019T"]}}}]}, {"name": "NODE_0000701", "node_attrs": {"div": 33, "num_date": {"value": 2021.3295830912818, "confidence": [2021.1405665205566, 2021.3762113268228]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/342312925/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4835616438356, "confidence": [2021.4835616438356, 2021.4835616438356]}, "tsne_y": {"value": 4.457514088406082}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.560630909130332}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.48815184612233}, "tsne_x": {"value": 15.349513184510888}, "mds3": {"value": -28.3570824273763}, "umap_x": {"value": 10.969991}, "pca2": {"value": -10.053398528109296}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -13.90590007143338}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4032402}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C2937A", "C6629T", "C25572T", "G26951T", "C27002T", "G29195T"]}}}, {"name": "NODE_0000703", "node_attrs": {"div": 33, "num_date": {"value": 2021.3648798766758, "confidence": [2021.1455723681713, 2021.5575342465754]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/342397489/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.5575342465754, "confidence": [2021.5575342465754, 2021.5575342465754]}, "tsne_y": {"value": 4.5823545075874}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.657602598678722}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.22279877868}, "tsne_x": {"value": 15.263700212875248}, "mds3": {"value": -25.931886231296644}, "umap_x": {"value": 11.100635}, "pca2": {"value": -9.467101159670015}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -5.520757045618192}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0289593}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G20033A", "A24410G", "C28905T"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "BHR/21921808008/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.8287671232877, "confidence": [2021.8287671232877, 2021.8287671232877]}, "tsne_y": {"value": 4.44083587486533}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.65"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.400563862608628}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.233387956798508}, "tsne_x": {"value": 15.421985334981256}, "mds3": {"value": -28.833940699803}, "umap_x": {"value": 10.990621}, "pca2": {"value": -9.544284742982406}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -15.190972604259231}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.5392764}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G709A", "G3231T", "C7926T", "T17826C", "G22232C", "G25555T", "A27880G"], "S": ["E224Q"]}, "labels": {"aa": "S: E224Q"}}}]}]}]}]}]}, {"name": "NODE_0000705", "node_attrs": {"div": 28, "num_date": {"value": 2021.108973541549, "confidence": [2020.9387965862452, 2021.2744257446202]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000343", "node_attrs": {"div": 29, "num_date": {"value": 2021.184625030144, "confidence": [2021.0126783512924, 2021.301356217561]}}, "branch_attrs": {"mutations": {"nuc": ["C2509T"]}}, "children": [{"name": "IND/GBRC846/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_y": {"value": 4.798587197524346}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.664022883005968}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.102803715431665}, "tsne_x": {"value": 15.04922500353624}, "mds3": {"value": -28.065814825755314}, "umap_x": {"value": 11.027353}, "pca2": {"value": -3.099606267368612}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -6.145411341821864}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.1211545}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A382G", "G26589T", "A27343G", "A29700G"]}}}, {"name": "USA/CA-CDC-FG-036907/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_y": {"value": 4.734406661500692}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.566978138736064}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.252842151884315}, "tsne_x": {"value": 15.048674068935368}, "mds3": {"value": -27.7015767235276}, "umap_x": {"value": 10.928665}, "pca2": {"value": -6.077519303800598}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -20.60244046709915}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4626338}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T3055C", "G3701A", "C17336T", "C18570T", "G21770T", "G22813T"], "S": ["V70F", "K417N"]}, "labels": {"aa": "S: V70F, K417N"}}}]}, {"name": "NODE_0000707", "node_attrs": {"div": 28, "num_date": {"value": 2021.130490439915, "confidence": [2020.9460223516694, 2021.2784067376756]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000337", "node_attrs": {"div": 29, "num_date": {"value": 2021.1865476988564, "confidence": [2021.0258953475898, 2021.3006549511294]}}, "branch_attrs": {"mutations": {"nuc": ["C21622T"]}}, "children": [{"name": "NZL/21MV0414/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3438356164384, "confidence": [2021.3438356164384, 2021.3438356164384]}, "tsne_y": {"value": 4.805886207733997}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.75"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -12.91818500617373}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 58.08153873121352}, "tsne_x": {"value": 15.110806878069775}, "mds3": {"value": -25.51841723870832}, "umap_x": {"value": 11.070179}, "pca2": {"value": 1.1353053924763818}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -0.64151099090129}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0575743}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C1329A", "C10626T", "G10901T", "C22314T", "G29744A"], "S": ["P251L"]}, "labels": {"aa": "S: P251L"}}}, {"name": "USA/NMDOH-2021139690/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_y": {"value": 4.578595700314647}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.75"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "New Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.155100429604492}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -3.425194523071817}, "tsne_x": {"value": 15.18129635259296}, "mds3": {"value": -27.46008065100414}, "umap_x": {"value": 10.987837}, "pca2": {"value": 0.3252058541436762}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -18.30242895326153}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4559348}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G2324A", "C2544T", "G7393T", "A21987G", "T25496C", "G26062T", "G27112A", "G27516A", "C29738A"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}]}, {"name": "NODE_0000709", "node_attrs": {"div": 28, "num_date": {"value": 2021.1788035619645, "confidence": [2020.95247974417, 2021.2744114750765]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS320/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3246575342466, "confidence": [2021.3246575342466, 2021.3246575342466]}, "tsne_y": {"value": 4.793344744729267}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.06531576670047}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 13.106708787744145}, "tsne_x": {"value": 15.126055363583}, "mds3": {"value": -23.854702979946204}, "umap_x": {"value": 11.098542}, "pca2": {"value": 5.552010456741042}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -5.768802905688268}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0301476}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C12053T", "C12439T", "C12781T", "G19056T"]}}}, {"name": "NODE_0000710", "node_attrs": {"div": 28, "num_date": {"value": 2021.187480607158, "confidence": [2020.9576759569914, 2021.3307554691723]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-136272/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.5493150684931, "confidence": [2021.5493150684931, 2021.5493150684931]}, "tsne_y": {"value": 4.695647833907107}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.70"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Midtjylland"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.496129896273615}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.085930183901411}, "tsne_x": {"value": 14.66132064963065}, "mds3": {"value": -27.73023506860689}, "umap_x": {"value": 10.931523}, "pca2": {"value": 18.916793218581446}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -22.53071553613055}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.6821995}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C64T", "A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "T2698C", "C4891T", "G5931A", "A10323G", "G21255T", "G21624C", "G28899T", "G28903T", "G29705T"], "S": ["R21T"]}, "labels": {"aa": "S: R21T"}}}, {"name": "NODE_0000711", "node_attrs": {"div": 28, "num_date": {"value": 2021.211088556454, "confidence": [2020.9599542185556, 2021.3341279372394]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000712", "node_attrs": {"div": 28, "num_date": {"value": 2021.2347287336265, "confidence": [2020.9594832200867, 2021.3585705151036]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000345", "node_attrs": {"div": 33, "num_date": {"value": 2021.4097458500657, "confidence": [2021.2579840625378, 2021.5162025941254]}}, "branch_attrs": {"mutations": {"nuc": ["C1684T", "G5164T", "C12049T", "G22427A", "G28326T"], "S": ["V289I"]}, "labels": {"aa": "S: V289I"}}, "children": [{"name": "BRA/RN-NVBS11100GENOV45952817795/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9191780821918, "confidence": [2021.9191780821918, 2021.9191780821918]}, "tsne_y": {"value": 3.939968733911948}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.47"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.086463903267493}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.1174415290264985}, "tsne_x": {"value": 14.93820569683414}, "mds3": {"value": -38.30347534612452}, "umap_x": {"value": 10.855744}, "pca2": {"value": -3.0034768790261768}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -23.42403457115432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.9153428}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A2254G", "T6253C", "C9438T", "C11651T", "C11681T", "A13222G", "C15037T", "G18028T", "T19755C", "A21405G", "T23084C", "C24378T", "T24640C"], "S": ["Y508H", "S939F"]}, "labels": {"aa": "S: Y508H, S939F"}}}, {"name": "NODE_0000714", "node_attrs": {"div": 33, "num_date": {"value": 2021.4619248581048, "confidence": [2021.2551575031414, 2021.5079572352263]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-CDC-QDX26765473/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.527397260274, "confidence": [2021.527397260274, 2021.527397260274]}, "tsne_y": {"value": 4.637504567816977}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.47"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.942957046922754}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -3.452408568593932}, "tsne_x": {"value": 15.039570957143392}, "mds3": {"value": -29.4006476247152}, "umap_x": {"value": 10.920864}, "pca2": {"value": 0.363267497464808}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -18.15736161961106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.5084882}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C15960T", "G25793A"]}}}, {"name": "USA/FL-CDC-ASC210240966/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_y": {"value": 4.632944081804344}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.47"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.68063298197339}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.659549530201092}, "tsne_x": {"value": 15.123064828965829}, "mds3": {"value": -25.63534931313724}, "umap_x": {"value": 11.101743}, "pca2": {"value": -8.528682976124077}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -7.9615955268289555}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0085402}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T1370C", "G5584A", "A21987G", "A24410G"], "S": ["D142G", "N950D"]}, "labels": {"aa": "S: D142G, N950D"}}}]}]}, {"name": "NODE_0000338", "node_attrs": {"div": 33, "num_date": {"value": 2021.4611130478904, "confidence": [2021.2959524200598, 2021.50621753449]}}, "branch_attrs": {"mutations": {"nuc": ["C40T", "G1729A", "G14030A", "C18086T", "C22792T"]}}, "children": [{"name": "USA/FL-CDC-STM-000714464/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5794520547945, "confidence": [2021.5794520547945, 2021.5794520547945]}, "tsne_y": {"value": 4.66196941622971}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.9.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.10822110851423}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 1.0699647083926278}, "tsne_x": {"value": 15.09417164919647}, "mds3": {"value": -25.976005334528505}, "umap_x": {"value": 11.029015}, "pca2": {"value": -3.667080995980215}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 9.329657901343614}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.1110368}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C344T", "C21219T", "A21987G", "C28651T"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "NODE_0000716", "node_attrs": {"div": 33, "num_date": {"value": 2021.4723940488404, "confidence": [2021.312448520215, 2021.5109589041097]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-125763/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.5109589041097, "confidence": [2021.5109589041097, 2021.5109589041097]}, "tsne_y": {"value": 4.738541598680112}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.9.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Syddanmark"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.452115313616448}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.103529088396352}, "tsne_x": {"value": 15.075480460870653}, "mds3": {"value": -26.37943341150193}, "umap_x": {"value": 11.040244}, "pca2": {"value": 18.835679584882083}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -8.91504756884882}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.07154}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C27509T"]}}}, {"name": "NODE_0000340", "node_attrs": {"div": 34, "num_date": {"value": 2021.521917808219, "confidence": [2021.4827913281572, 2021.521917808219]}}, "branch_attrs": {"mutations": {"nuc": ["C4321T"]}}, "children": [{"name": "BRA/ILMD2200091/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.9328767123288, "confidence": [2021.9328767123288, 2021.9328767123288]}, "tsne_y": {"value": 4.289695087341158}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.9.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.502260052878608}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 1.7370451726027438}, "tsne_x": {"value": 15.114062052525}, "mds3": {"value": -31.77830624605473}, "umap_x": {"value": 10.876262}, "pca2": {"value": 3.074058912634172}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -17.82988102759433}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.8003767}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C274T", "A741G", "C4331T", "C5512T", "C7420T", "T17574C", "A25876G", "C28507T"]}}}, {"name": "NZL/21MV0585/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.521917808219, "confidence": [2021.521917808219, 2021.521917808219]}, "tsne_y": {"value": 4.713894762393366}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.9.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.118426740469497}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": 8.76131796767221}, "tsne_x": {"value": 15.07458001679056}, "mds3": {"value": -28.92559830850594}, "umap_x": {"value": 11.037683}, "pca2": {"value": 2.1797870544003874}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": 0.1581665952091856}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0969517}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000354", "node_attrs": {"div": 30, "num_date": {"value": 2021.336873483754, "confidence": [2021.2807084483945, 2021.341095890411]}}, "branch_attrs": {"mutations": {"nuc": ["C1403T", "G5584T"]}}, "children": [{"name": "VNM/OUCRU-NHTD402/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_y": {"value": 4.896488733806659}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.284611859471806}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.867318602748149}, "tsne_x": {"value": 15.049785111178265}, "mds3": {"value": -25.724077647993653}, "umap_x": {"value": 11.1439905}, "pca2": {"value": -6.308041255708923}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -6.121937477944926}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -1.9717178}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000719", "node_attrs": {"div": 30, "num_date": {"value": 2021.3420045001055, "confidence": [2021.2965380266592, 2021.4147006715311]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD442/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_y": {"value": 4.911715693085412}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.059403064961684}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.610263866991411}, "tsne_x": {"value": 15.00776351392892}, "mds3": {"value": -26.17065160117668}, "umap_x": {"value": 11.059349}, "pca2": {"value": -5.5703877870577605}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -8.507782238491924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0786479}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C23996T", "A29500G"], "S": ["P812S"]}, "labels": {"aa": "S: P812S"}}}, {"name": "NODE_0000356", "node_attrs": {"div": 31, "num_date": {"value": 2021.4033134962337, "confidence": [2021.2782557994165, 2021.4921351607722]}}, "branch_attrs": {"mutations": {"nuc": ["C5497T"]}}, "children": [{"name": "NODE_0000746", "node_attrs": {"div": 31, "num_date": {"value": 2021.4196995159236, "confidence": [2021.2821727639705, 2021.4975821558512]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000372", "node_attrs": {"div": 33, "num_date": {"value": 2021.493131074097, "confidence": [2021.382985832423, 2021.5431948013522]}}, "branch_attrs": {"mutations": {"nuc": ["G5629T", "C8318A"]}}, "children": [{"name": "VNM/HCMC_513/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.7767123287672, "confidence": [2021.7767123287672, 2021.7767123287672]}, "tsne_y": {"value": 5.051669795330332}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.50452347050642}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.735363855126405}, "tsne_x": {"value": 14.749858931754304}, "mds3": {"value": -27.107693000120232}, "umap_x": {"value": 11.01961}, "pca2": {"value": 37.72796833495384}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -2.092248715348492}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.2022488}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G8346A", "C11001T", "C18322T", "T22679C", "C27503T"], "S": ["S373P"]}, "labels": {"aa": "S: S373P"}}}, {"name": "VNM/HCMC_141/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5684931506848, "confidence": [2021.5684931506848, 2021.5684931506848]}, "tsne_y": {"value": 5.032975309696287}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.530708871417424}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.77260003779806}, "tsne_x": {"value": 14.836780539295908}, "mds3": {"value": -29.765976487081385}, "umap_x": {"value": 11.009247}, "pca2": {"value": 15.827078664384173}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -1.744489998125487}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.3374302}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T12016C", "C22329T", "G23401C", "G26416T"], "S": ["S256L", "Q613H"]}, "labels": {"aa": "S: S256L, Q613H"}}}]}, {"name": "NODE_0000363", "node_attrs": {"div": 32, "num_date": {"value": 2021.4716750336495, "confidence": [2021.3556311518512, 2021.521803438428]}}, "branch_attrs": {"mutations": {"nuc": ["G20352A"]}}, "children": [{"name": "VNM/HCMC_108/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.5438356164384, "confidence": [2021.5438356164384, 2021.5438356164384]}, "tsne_y": {"value": 4.990792387140611}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.943575533086571}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.895392181644834}, "tsne_x": {"value": 14.881392039101115}, "mds3": {"value": -25.970294766489403}, "umap_x": {"value": 11.0271635}, "pca2": {"value": 33.61122586116144}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -12.031389860940967}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.1369627}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A170G", "G13126T", "G21569A", "G25033A"], "S": ["V3I"]}, "labels": {"aa": "S: V3I"}}}, {"name": "NODE_0000723", "node_attrs": {"div": 32, "num_date": {"value": 2021.5641893385493, "confidence": [2021.350273068251, 2021.773726843364]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD320/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_y": {"value": 4.952538514383681}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.326096283670369}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.500138567416134}, "tsne_x": {"value": 14.92652220994335}, "mds3": {"value": -27.94086481763623}, "umap_x": {"value": 10.993168}, "pca2": {"value": -5.261378983831802}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -10.523386523682245}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.140727}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G18636A", "A27946G"]}}}, {"name": "VNM/HCMC_593/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.8808219178081, "confidence": [2021.8808219178081, 2021.8808219178081]}, "tsne_y": {"value": 5.098162822541379}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.91166782442452}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.9570021719066775}, "tsne_x": {"value": 14.73334443675462}, "mds3": {"value": -29.11162987180576}, "umap_x": {"value": 10.910258}, "pca2": {"value": 20.173091831363934}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -10.236047823560195}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.5832064}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C3656T", "C13821T", "C14922T", "A16053G", "T21748G", "C25585G", "C28776A"]}}}]}]}]}, {"name": "NODE_0000724", "node_attrs": {"div": 31, "num_date": {"value": 2021.4630913082087, "confidence": [2021.2736816070233, 2021.5613288025243]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_202/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.5986301369862, "confidence": [2021.5986301369862, 2021.5986301369862]}, "tsne_y": {"value": 4.981062970109643}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.326434447128875}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.1291439167123904}, "tsne_x": {"value": 14.94605693051208}, "mds3": {"value": -25.734527275067578}, "umap_x": {"value": 11.048196}, "pca2": {"value": 19.984841723009914}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -14.912931192248074}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.084259}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G22604T", "A25223G", "A25581G", "G29235T"], "S": ["A348S", "I1221V"]}, "labels": {"aa": "S: A348S, I1221V"}}}, {"name": "NODE_0000725", "node_attrs": {"div": 31, "num_date": {"value": 2021.5347233910215, "confidence": [2021.4638832827015, 2021.6062537558987]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000361", "node_attrs": {"div": 32, "num_date": {"value": 2021.6384307697638, "confidence": [2021.5083791101508, 2021.7211348434178]}}, "branch_attrs": {"mutations": {"nuc": ["C9711T"]}}, "children": [{"name": "VNM/OUCRU-NHTD496/2022", "node_attrs": {"div": 38, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 5.056610267358964}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -17.505897759378918}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.647785596448978}, "tsne_x": {"value": 14.747955391916673}, "mds3": {"value": -31.19174971084698}, "umap_x": {"value": 10.934692}, "pca2": {"value": -5.737537528892147}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -11.961748959985828}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.575094}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T11081C", "C12974T", "A13611G", "A25581G", "C25886G", "A27655G"]}}}, {"name": "VNM/OUCRU-NHTD297/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.8780821917808, "confidence": [2021.8780821917808, 2021.8780821917808]}, "tsne_y": {"value": 5.017029965049975}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.691728906909155}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.027728121554962}, "tsne_x": {"value": 14.796268451510285}, "mds3": {"value": -30.49360810332816}, "umap_x": {"value": 10.936186}, "pca2": {"value": -5.247913082021747}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -12.746066739430692}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.5325336}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C2847T", "C6092A", "A16687G", "G25477T", "C28367T"]}}}]}, {"name": "NODE_0000727", "node_attrs": {"div": 31, "num_date": {"value": 2021.5428518415758, "confidence": [2021.4988624886712, 2021.6123287671232]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_262/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.6123287671232, "confidence": [2021.6123287671232, 2021.6123287671232]}, "tsne_y": {"value": 4.933598001418584}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.585528171828107}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.168214833077201}, "tsne_x": {"value": 15.01886893774986}, "mds3": {"value": -26.222218053344093}, "umap_x": {"value": 11.09706}, "pca2": {"value": 0.9447450128452316}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -6.048161860044425}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.0585093}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C13356T"]}}}, {"name": "NODE_0000729", "node_attrs": {"div": 31, "num_date": {"value": 2021.5708009292364, "confidence": [2021.507703766675, 2021.6252933947148]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000359", "node_attrs": {"div": 34, "num_date": {"value": 2021.6612434102587, "confidence": [2021.625312195692, 2021.6770674602726]}}, "branch_attrs": {"mutations": {"nuc": ["C15981T", "G25354A", "C26198T"]}}, "children": [{"name": "VNM/OUCRU-NHTD97/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.713698630137, "confidence": [2021.713698630137, 2021.713698630137]}, "tsne_y": {"value": 4.966118272291142}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.942158080846712}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.446061108343564}, "tsne_x": {"value": 14.940561170236991}, "mds3": {"value": -27.453590833957644}, "umap_x": {"value": 11.044448}, "pca2": {"value": -5.097901900566069}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -9.589359277209011}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.1220653}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {}}}, {"name": "VNM/OUCRU-NHTD56/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.6780821917807, "confidence": [2021.6780821917807, 2021.6780821917807]}, "tsne_y": {"value": 4.977068085643525}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.172416636310532}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.994490130011899}, "tsne_x": {"value": 14.89902855002378}, "mds3": {"value": -29.258205804939585}, "umap_x": {"value": 10.958199}, "pca2": {"value": -8.95215713379697}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -5.617671290023345}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.3331885}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C2485T"]}}}]}, {"name": "NODE_0000731", "node_attrs": {"div": 31, "num_date": {"value": 2021.5926841881376, "confidence": [2021.4928444737425, 2021.7077780193233]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD171/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.7547945205479, "confidence": [2021.7547945205479, 2021.7547945205479]}, "tsne_y": {"value": 4.984461503229057}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.137110960932157}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.480345899450079}, "tsne_x": {"value": 14.916221145563885}, "mds3": {"value": -27.787128815805463}, "umap_x": {"value": 11.0259905}, "pca2": {"value": -5.226800124518835}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -12.40861941798462}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.2138016}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["A761C", "C5392T", "C9661T", "C18995T"]}}}, {"name": "NODE_0000733", "node_attrs": {"div": 31, "num_date": {"value": 2021.6346725940027, "confidence": [2021.4550882527367, 2021.678915546441]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD220/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.804109589041, "confidence": [2021.804109589041, 2021.804109589041]}, "tsne_y": {"value": 4.97041259530392}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -13.792349736422302}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.717544975315766}, "tsne_x": {"value": 14.891910906659312}, "mds3": {"value": -29.25703329400343}, "umap_x": {"value": 10.954597}, "pca2": {"value": -5.942240904226272}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -10.756201027929794}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.3267949}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G3764A", "C19593T", "G19999T", "C23248T"]}}}, {"name": "NODE_0000734", "node_attrs": {"div": 31, "num_date": {"value": 2021.6423722571162, "confidence": [2021.4597102231435, 2021.7101033258007]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_602/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.8835616438357, "confidence": [2021.8835616438357, 2021.8835616438357]}, "tsne_y": {"value": 4.985140611073566}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.14196588026548}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.276911572805258}, "tsne_x": {"value": 14.858327577697736}, "mds3": {"value": -29.06169079279129}, "umap_x": {"value": 10.984977}, "pca2": {"value": 19.8260593475064}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -4.159324365172807}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.265425}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["T4483C", "C8878T", "C23191T", "T24469C", "G28851T"]}}}, {"name": "NODE_0000735", "node_attrs": {"div": 31, "num_date": {"value": 2021.6629431864715, "confidence": [2021.4600976739728, 2021.7270488150843]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD495/2022", "node_attrs": {"div": 36, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 4.988036848219288}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -16.73174544859831}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -6.231122416919723}, "tsne_x": {"value": 14.850036629529606}, "mds3": {"value": -31.220032675016515}, "umap_x": {"value": 10.934084}, "pca2": {"value": -9.451281503754505}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -3.2423747981246933}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.4744585}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C1628A", "A3069G", "C16323T", "C16989T", "A27340G"]}}}, {"name": "NODE_0000738", "node_attrs": {"div": 31, "num_date": {"value": 2021.6762329318985, "confidence": [2021.4618232627563, 2021.7459537970976]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/OUCRU-NHTD494/2022", "node_attrs": {"div": 37, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 5.096341648634243}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.931746116012276}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -4.662264239599703}, "tsne_x": {"value": 14.914750917360596}, "mds3": {"value": -28.63708365281523}, "umap_x": {"value": 10.972704}, "pca2": {"value": -5.717768585374698}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -8.516075335863787}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.2994943}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G216A", "G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C829T", "A9079G", "G21796A", "T22227C", "A27359G"], "S": ["V222A"]}, "labels": {"aa": "S: V222A"}}}, {"name": "NODE_0000741", "node_attrs": {"div": 31, "num_date": {"value": 2021.7039390233908, "confidence": [2021.4603224227549, 2021.7685938696197]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_702/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.9301369863015, "confidence": [2021.9301369863015, 2021.9301369863015]}, "tsne_y": {"value": 5.095745886372312}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.134730393277543}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -3.603220413039889}, "tsne_x": {"value": 14.67885429989632}, "mds3": {"value": -30.292163462733203}, "umap_x": {"value": 10.928972}, "pca2": {"value": -7.911783012705157}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -19.93041916779391}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.6242201}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["C593T", "T616C", "G1958A", "G3259T", "C3702T", "C17004T", "A19696G", "G26849T"]}}}, {"name": "VNM/HCMC_718/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.9356164383562, "confidence": [2021.9356164383562, 2021.9356164383562]}, "tsne_y": {"value": 5.026534168887463}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "0"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "2"}, "Nextclade_pango_collapsed": {"value": "AY.57"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.220341816130784}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "2"}, "pca1": {"value": -5.231416380504728}, "tsne_x": {"value": 14.758643318016738}, "mds3": {"value": -28.4945679430492}, "umap_x": {"value": 10.947889}, "pca2": {"value": -7.454753369551626}, "Nextstrain_clade": {"value": "21I (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "0"}, "mds2": {"value": -20.47914636256495}, "umap_label_for_Nextclade_pango_collapsed": {"value": "2"}, "umap_y": {"value": -2.5603788}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "2"}}, "branch_attrs": {"mutations": {"nuc": ["G2036A", "T3541C", "C8016T", "G13390A", "C16260T", "A27083G", "G27382T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000307", "node_attrs": {"div": 30, "num_date": {"value": 2020.7117292527432, "confidence": [2020.6530676901746, 2020.760272181814]}}, "branch_attrs": {"mutations": {"nuc": ["G4181T", "C6402T", "C7124T", "C8986T", "G9053T", "C10029T", "A11201G", "A11332G", "C19220T", "C27874T"]}}, "children": [{"name": "BHR/400199356_S8_L001/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.768493150685, "confidence": [2021.768493150685, 2021.768493150685]}, "tsne_y": {"value": 6.95873886578284}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 10.922721059250238}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 40.19144706351735}, "tsne_x": {"value": 25.00058742601336}, "mds3": {"value": -29.84168344726968}, "umap_x": {"value": 11.548073}, "pca2": {"value": -5.671966337393995}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.500046160047186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.241525}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1267T", "T1871G", "A3997T", "C27686T", "A29565G"]}}}, {"name": "NODE_0000003", "node_attrs": {"div": 31, "num_date": {"value": 2020.74395698683, "confidence": [2020.6826193323097, 2020.7673632309286]}}, "branch_attrs": {"mutations": {"nuc": ["G28916T"]}}, "children": [{"name": "NODE_0000745", "node_attrs": {"div": 31, "num_date": {"value": 2021.1894593966706, "confidence": [2020.9953441678836, 2021.3339553641486]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000000", "node_attrs": {"div": 32, "num_date": {"value": 2021.3324328508227, "confidence": [2021.0605450892997, 2021.555203035308]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "NODE_0000747", "node_attrs": {"div": 32, "num_date": {"value": 2021.3575103732264, "confidence": [2021.0786171163284, 2021.5872562653326]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/AR-UFRO-0430/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.858904109589, "confidence": [2021.858904109589, 2021.858904109589]}, "tsne_y": {"value": 6.302603237642381}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.102"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 4.495680259804219}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 29.85067865380233}, "tsne_x": {"value": 25.1904640838186}, "mds3": {"value": -33.76461521696975}, "umap_x": {"value": 11.392143}, "pca2": {"value": -7.02112880997608}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.70965501165681}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.787203}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G1495T", "C1884T", "C21846T", "G25116A", "A27690T", "C29836T"], "S": ["T95I", "R1185H"]}, "labels": {"aa": "S: T95I, R1185H"}}}, {"name": "SYC/SS3544/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.7027397260274, "confidence": [2021.7027397260274, 2021.7027397260274]}, "tsne_y": {"value": 5.900659813592817}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Seychelles"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.67955084446099}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 13.03171396222609}, "tsne_x": {"value": 25.77565258918693}, "mds3": {"value": -32.447053346868934}, "umap_x": {"value": 11.200809}, "pca2": {"value": 5.070392567598107}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.4663967045676576}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.844985}, "country": {"value": "Seychelles"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C4438T", "G5496A", "G6362T", "C7279T", "C7834T", "A9397T", "G23120T", "G25337T"], "S": ["A520S", "D1259Y"]}, "labels": {"aa": "S: A520S, D1259Y"}}}]}, {"name": "NODE_0000002", "node_attrs": {"div": 36, "num_date": {"value": 2021.4927533648527, "confidence": [2021.2829065080498, 2021.5818984492955]}}, "branch_attrs": {"mutations": {"nuc": ["C10977T", "G14186T", "C19637T", "G28378T"]}}, "children": [{"name": "BRA/EPI_ISL_4273527/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6780821917807, "confidence": [2021.6780821917807, 2021.6780821917807]}, "tsne_y": {"value": 8.917006612074731}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.46.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "S\u00e3o Paulo"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 11.807964296626029}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 31.04888560037289}, "tsne_x": {"value": 22.46759377098506}, "mds3": {"value": -34.08618924470502}, "umap_x": {"value": 11.238619}, "pca2": {"value": -3.7421764801034296}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.702119992385274}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.529562}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A861G", "G7042T", "G15392T", "C27975T"]}}}, {"name": "BRA/PE-NVBS4400GENOV827941467842/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_y": {"value": 8.921458791562017}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.46.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.7702358522136}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.366422357192809}, "tsne_x": {"value": 22.460200609488084}, "mds3": {"value": -33.81631675273968}, "umap_x": {"value": 11.195122}, "pca2": {"value": -8.001362044521038}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.068702893539497}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.511015}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2147T", "C4534T", "C11471T", "C27688T"]}}}]}]}, {"name": "NODE_0000749", "node_attrs": {"div": 31, "num_date": {"value": 2021.2061914189785, "confidence": [2021.0252822804025, 2021.3386352982855]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000010", "node_attrs": {"div": 33, "num_date": {"value": 2021.3298003004938, "confidence": [2021.1876481744498, 2021.4086211444253]}}, "branch_attrs": {"mutations": {"nuc": ["G2336A", "G17331T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-6601/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_y": {"value": 7.648738026365529}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.789173305089268}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.437540050107389}, "tsne_x": {"value": 24.255271140279632}, "mds3": {"value": -28.42827169502668}, "umap_x": {"value": 11.541319}, "pca2": {"value": -12.591683549209948}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.21099755287621}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.341679}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C9491T", "A20059T", "A24410G", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "NODE_0000752", "node_attrs": {"div": 33, "num_date": {"value": 2021.3697656347651, "confidence": [2021.191362500936, 2021.6053228180224]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS8067GENOV45616629405/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.768493150685, "confidence": [2021.768493150685, 2021.768493150685]}, "tsne_y": {"value": 8.87784739710523}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.85345754323238}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 15.062442449266095}, "tsne_x": {"value": 24.56544307295785}, "mds3": {"value": -34.95992565000254}, "umap_x": {"value": 11.037527}, "pca2": {"value": -9.51956748798587}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -15.6737693124687}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.610162}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "G2144A", "C3092T", "C4927T", "C5144T", "C9438T", "C17733T", "G23401T", "C29311T"], "S": ["Q613H"]}, "labels": {"aa": "S: Q613H"}}}, {"name": "SouthAfrica/NHLS-UCT-GP-M984/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.8808219178081, "confidence": [2021.8808219178081, 2021.8808219178081]}, "tsne_y": {"value": 6.863584107430174}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.52927979420092}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.704225910686264}, "tsne_x": {"value": 24.187434778673754}, "mds3": {"value": -33.41569890858525}, "umap_x": {"value": 11.538436}, "pca2": {"value": 1.9294513626998429}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.038982956257713}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.628567}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C98T", "A6217G", "C6317T", "G17721T", "G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}}]}]}, {"name": "NODE_0000753", "node_attrs": {"div": 31, "num_date": {"value": 2021.2321826571103, "confidence": [2021.0330162946782, 2021.3423416505595]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0439/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_y": {"value": 5.878088893528353}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 12.729870517597943}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.966641795122186}, "tsne_x": {"value": 25.13228467896868}, "mds3": {"value": -33.1688324923029}, "umap_x": {"value": 11.44584}, "pca2": {"value": 0.2349108441541135}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.4053404492934018}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.38405}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C8655T", "G18498T", "T19215C", "G20433T", "G28079T", "C29197T", "C29514A"]}}}, {"name": "NODE_0000756", "node_attrs": {"div": 31, "num_date": {"value": 2021.3281248806322, "confidence": [2021.0764615856735, 2021.3916428031]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0491/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.4369863013699, "confidence": [2021.4369863013699, 2021.4369863013699]}, "tsne_y": {"value": 6.548126794328904}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 7.6088761266547795}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.94786237514465}, "tsne_x": {"value": 24.63468947073377}, "mds3": {"value": -29.62023680365757}, "umap_x": {"value": 11.579928}, "pca2": {"value": 0.2337710411770947}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.8892003865471825}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.47133}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C10369T", "T12304C", "C29721T"]}}}, {"name": "NODE_0000757", "node_attrs": {"div": 31, "num_date": {"value": 2021.3736920299782, "confidence": [2021.0711927782309, 2021.4917808219177]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/Laila_25/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.4917808219177, "confidence": [2021.4917808219177, 2021.4917808219177]}, "tsne_y": {"value": 6.830514957108631}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.113764268737067}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 1.1965756865510042}, "tsne_x": {"value": 24.667951567509345}, "mds3": {"value": -27.32904935286712}, "umap_x": {"value": 11.580194}, "pca2": {"value": 6.434248500033454}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.7430622470233192}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.488874}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C19983T"]}}}, {"name": "NODE_0000758", "node_attrs": {"div": 31, "num_date": {"value": 2021.4625336944014, "confidence": [2021.0569553749976, 2021.5491202607066]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/342594684_S99_L001/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.7082191780821, "confidence": [2021.7082191780821, 2021.7082191780821]}, "tsne_y": {"value": 7.375925327321224}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 8.258862424614689}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 36.05674894335176}, "tsne_x": {"value": 24.466526731646383}, "mds3": {"value": -29.32085921659529}, "umap_x": {"value": 11.585936}, "pca2": {"value": -9.339861393152562}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.599061677388179}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.261868}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C7267T", "G8178A", "C8247T", "C10263T", "G15906T", "G28461A"]}}}, {"name": "BHR/21210187928_S57_L001/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.8068493150686, "confidence": [2021.8068493150686, 2021.8068493150686]}, "tsne_y": {"value": 7.958022210999805}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 7.206839859633626}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 27.77350012000785}, "tsne_x": {"value": 24.46991387182906}, "mds3": {"value": -35.46068441385509}, "umap_x": {"value": 11.221584}, "pca2": {"value": -11.508817842776883}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.906222807459963}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.5954275}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1480T", "A4860G", "C5183T", "C11280A", "A16006G", "T25751G", "T25969C", "C28045T", "C29236T"]}}}]}]}]}]}]}]}, {"name": "NODE_0000012", "node_attrs": {"div": 31, "num_date": {"value": 2020.7530127983507, "confidence": [2020.6845988285734, 2020.7784532351666]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000066", "node_attrs": {"div": 33, "num_date": {"value": 2020.7737704897795, "confidence": [2020.7224276201334, 2020.7935715450296]}}, "branch_attrs": {"mutations": {"nuc": ["C15952A", "A28299T"]}}, "children": [{"name": "NODE_0000761", "node_attrs": {"div": 34, "num_date": {"value": 2021.4722987903137, "confidence": [2021.1881836053212, 2021.5515060205055]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "Denmark/DCGC-135302/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.5520547945205, "confidence": [2021.5520547945205, 2021.5520547945205]}, "tsne_y": {"value": 7.417559319798782}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Hovedstaden"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.347715656472936}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.353949986344675}, "tsne_x": {"value": 24.775851776414097}, "mds3": {"value": -31.1263473410688}, "umap_x": {"value": 11.609143}, "pca2": {"value": -5.828252117249846}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.232589824649942}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.215583}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C25710T", "G28851C"]}}}, {"name": "NODE_0000763", "node_attrs": {"div": 34, "num_date": {"value": 2021.536365258293, "confidence": [2021.1878127505654, 2021.6053855379816]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10186-CVDP-854B7751-39C4-45B5-A85A-A1D993CDFBF2", "node_attrs": {"div": 37, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 7.443057639248811}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.474842384051}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.364861227703759}, "tsne_x": {"value": 24.757419179377}, "mds3": {"value": -29.79210450426079}, "umap_x": {"value": 11.618761}, "pca2": {"value": 7.9368400394745}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.3446792595293147}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.229858}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G3764A", "A6517T", "G24197T"], "S": ["A879S"]}, "labels": {"aa": "S: A879S"}}}, {"name": "IMS-10116-CVDP-10A5ABBA-13CD-474F-B960-A7ADC74DF389", "node_attrs": {"div": 38, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_y": {"value": 7.594403702329833}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.044136992745242}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.030806246467776}, "tsne_x": {"value": 24.87237570780057}, "mds3": {"value": -33.17200235701466}, "umap_x": {"value": 11.50587}, "pca2": {"value": 18.96996786015873}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.447231367241346}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.429474}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C18115T", "G25699A", "C25731T", "C28093T"]}}}]}]}, {"name": "NODE_0000069", "node_attrs": {"div": 33, "num_date": {"value": 2020.776994806399, "confidence": [2020.7257510311447, 2020.8034262733777]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000765", "node_attrs": {"div": 33, "num_date": {"value": 2021.5433099818833, "confidence": [2021.407589183441, 2021.6791960857954]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10150-CVDP-93F3F464-019D-43BD-BC8B-8D3D3EC43D7C", "node_attrs": {"div": 37, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_y": {"value": 7.867714326356562}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 13.23348226398084}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 28.95201726000391}, "tsne_x": {"value": 25.02992078561297}, "mds3": {"value": -32.621750349102754}, "umap_x": {"value": 11.446274}, "pca2": {"value": -8.633517639123376}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.128483036605159}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.308918}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G740A", "C2037T", "C23934T", "G29449T"], "S": ["T791I"]}, "labels": {"aa": "S: T791I"}}}, {"name": "NODE_0000767", "node_attrs": {"div": 33, "num_date": {"value": 2021.634956244644, "confidence": [2021.4437202974268, 2021.7831506849316]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21510263973_S82_L001/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.8342465753424, "confidence": [2021.8342465753424, 2021.8342465753424]}, "tsne_y": {"value": 7.848858695705167}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 12.745207258530751}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 29.98870153555578}, "tsne_x": {"value": 25.05105235526826}, "mds3": {"value": -32.49314314634413}, "umap_x": {"value": 11.471542}, "pca2": {"value": -7.049189394095236}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.5950560834327465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.460184}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1758T", "T12640C", "C29721T", "C29750T"]}}}, {"name": "NODE_0000768", "node_attrs": {"div": 33, "num_date": {"value": 2021.6774032287603, "confidence": [2021.461077089473, 2021.7931506849316]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921978648/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_y": {"value": 8.13055903080269}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.379243239103856}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.681004471460497}, "tsne_x": {"value": 25.08535707452572}, "mds3": {"value": -33.21377758218549}, "umap_x": {"value": 11.212532}, "pca2": {"value": -10.00356271322044}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -10.609573833788266}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.972064}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "C10191T", "A11356T", "C16329T", "T19842C", "C29274T"]}}}, {"name": "OX117795", "node_attrs": {"div": 33, "num_date": {"value": 2021.7931506849316, "confidence": [2021.7931506849316, 2021.7931506849316]}, "tsne_y": {"value": 7.115595285790512}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Baden-Wuerttemberg"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.67856852932846}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 11.663938191832486}, "tsne_x": {"value": 24.709553622237244}, "mds3": {"value": -28.28597741090364}, "umap_x": {"value": 11.606709}, "pca2": {"value": -6.979252142298557}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.8121595208075383}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.5073185}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000073", "node_attrs": {"div": 34, "num_date": {"value": 2020.7886452343812, "confidence": [2020.7390730192053, 2020.8122584026225]}}, "branch_attrs": {"mutations": {"nuc": ["C18744T"]}}, "children": [{"name": "OV111672", "node_attrs": {"div": 40, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_y": {"value": 8.361198879371289}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 7.968574865302653}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 28.404616323745383}, "tsne_x": {"value": 25.24836768373999}, "mds3": {"value": -32.9480077097453}, "umap_x": {"value": 11.179418}, "pca2": {"value": -12.583969270034324}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -13.1211213742674}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.994427}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T5864C", "C8251T", "G23311T", "C23635T", "A27620T", "T28828C"], "S": ["E583D"]}, "labels": {"aa": "S: E583D"}}}, {"name": "NODE_0000770", "node_attrs": {"div": 34, "num_date": {"value": 2021.4622832011546, "confidence": [2021.1841380955052, 2021.5465753424658]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-134600/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.5465753424658, "confidence": [2021.5465753424658, 2021.5465753424658]}, "tsne_y": {"value": 7.504753783397159}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Hovedstaden"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.993529224246341}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 16.00057842825223}, "tsne_x": {"value": 24.90306608745016}, "mds3": {"value": -28.941114274547854}, "umap_x": {"value": 11.589699}, "pca2": {"value": 3.530863597576739}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.692552356545612}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.484649}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C9693T"]}}}, {"name": "NODE_0000771", "node_attrs": {"div": 34, "num_date": {"value": 2021.4991616326677, "confidence": [2021.196772115232, 2021.5846070376545]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-176203/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7219178082191, "confidence": [2021.7219178082191, 2021.7219178082191]}, "tsne_y": {"value": 8.508251621875155}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Midtjylland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.390596024498166}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.010957209750582}, "tsne_x": {"value": 25.592799281560524}, "mds3": {"value": -39.81790273898503}, "umap_x": {"value": 11.079069}, "pca2": {"value": 18.90015717508054}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.401775920490058}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.932195}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "G6392A", "C18264T", "C18981T", "A20835G", "G21987A", "C22597T", "C23758T", "C28695T"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}}, {"name": "NODE_0000076", "node_attrs": {"div": 35, "num_date": {"value": 2021.5823085778177, "confidence": [2021.4461592418704, 2021.696762383752]}}, "branch_attrs": {"mutations": {"nuc": ["C24130T"]}}, "children": [{"name": "NODE_0000077", "node_attrs": {"div": 36, "num_date": {"value": 2021.6613166623638, "confidence": [2021.5104648265017, 2021.7223803337097]}}, "branch_attrs": {"mutations": {"nuc": ["G3728T"]}}, "children": [{"name": "BRA/SP-NVBS11483GENOV828482519465/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_y": {"value": 8.326756863180492}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.646341410521519}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.575774085574862}, "tsne_x": {"value": 25.285093692242786}, "mds3": {"value": -33.689934260664955}, "umap_x": {"value": 11.185514}, "pca2": {"value": -5.845737076327237}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -10.439662427491877}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.015673}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C16547T", "C19524T", "T28142C"]}}}, {"name": "BRA/SP-NVBS8246GENOV828211523527/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.7575342465752, "confidence": [2021.7575342465752, 2021.7575342465752]}, "tsne_y": {"value": 8.4348674329711}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.697865990121528}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.981960647684507}, "tsne_x": {"value": 25.3453564455725}, "mds3": {"value": -30.68103406813828}, "umap_x": {"value": 11.306413}, "pca2": {"value": -6.91084753491543}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.913466970527044}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.035534}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C18326T", "G22241T", "A24410G", "C28399T"], "S": ["V227L", "N950D"]}, "labels": {"aa": "S: V227L, N950D"}}}]}, {"name": "NODE_0000774", "node_attrs": {"div": 35, "num_date": {"value": 2021.609464169402, "confidence": [2021.4595891957551, 2021.7519548164573]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000775", "node_attrs": {"div": 35, "num_date": {"value": 2021.6742674400807, "confidence": [2021.457961540242, 2021.829002949069]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-249306/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.9109589041095, "confidence": [2021.9109589041095, 2021.9109589041095]}, "tsne_y": {"value": 8.434191526859431}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Sjaelland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.231887973452496}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 10.241041369828451}, "tsne_x": {"value": 25.397883181281376}, "mds3": {"value": -37.10872547062717}, "umap_x": {"value": 11.298165}, "pca2": {"value": 1.347203616551038}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.487446688912692}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.438826}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C233T", "G509-", "G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-", "T519-", "G520-", "G521-", "T522-", "T523-", "C1952A", "G25354T", "T27409C", "G29081T"]}}}, {"name": "CHL/AR-UFRO-0418/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.8506849315067, "confidence": [2021.8506849315067, 2021.8506849315067]}, "tsne_y": {"value": 8.029955657792499}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.735890040320523}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.10150869915268}, "tsne_x": {"value": 25.13765031755307}, "mds3": {"value": -31.4084102118226}, "umap_x": {"value": 11.564249}, "pca2": {"value": -4.319752387386747}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.970029108579249}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.017081}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C19955T"]}}}]}, {"name": "NODE_0000080", "node_attrs": {"div": 36, "num_date": {"value": 2021.6614119219714, "confidence": [2021.5215027455658, 2021.7905868519952]}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}, "children": [{"name": "BHR/21921814809_S6_L001/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.8342465753424, "confidence": [2021.8342465753424, 2021.8342465753424]}, "tsne_y": {"value": 8.43678856843504}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 15.31869793692868}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 29.467602877644243}, "tsne_x": {"value": 25.399901346272472}, "mds3": {"value": -34.397094915511325}, "umap_x": {"value": 11.293248}, "pca2": {"value": -7.118463474177367}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.701876115759111}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.439927}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T1871G", "A2903G", "C6762T", "G7988A"]}}}, {"name": "NODE_0000777", "node_attrs": {"div": 36, "num_date": {"value": 2021.7040200311528, "confidence": [2021.5190372903203, 2021.7893261940021]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS11475GENOV828515464014/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.9356164383562, "confidence": [2021.9356164383562, 2021.9356164383562]}, "tsne_y": {"value": 8.40206467662774}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.570385295460916}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.590034521442798}, "tsne_x": {"value": 25.34017415223981}, "mds3": {"value": -34.097488349961715}, "umap_x": {"value": 11.414479}, "pca2": {"value": -5.842748270804528}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.083801989010798}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.744565}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3924T", "A27545G", "C28657T"]}}}, {"name": "BRA/SP-NVBS10262GENOV828333688548/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8342465753424, "confidence": [2021.8342465753424, 2021.8342465753424]}, "tsne_y": {"value": 8.539838755957522}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.43"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.43"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.2239331335098297}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.234636880172712}, "tsne_x": {"value": 25.435318223466066}, "mds3": {"value": -37.085677131881226}, "umap_x": {"value": 11.174917}, "pca2": {"value": 0.8901805316016521}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.739766951862454}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.744837}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G388A", "T21369C", "G22427A", "T23794C", "G24770T"], "S": ["V289I", "A1070S"]}, "labels": {"aa": "S: V289I, A1070S"}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000779", "node_attrs": {"div": 32, "num_date": {"value": 2021.054717125605, "confidence": [2020.9164547267308, 2021.2404383337691]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000029", "node_attrs": {"div": 33, "num_date": {"value": 2021.189543686917, "confidence": [2020.9844313095307, 2021.4063798571701]}}, "branch_attrs": {"mutations": {"nuc": ["C21846T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}, "children": [{"name": "OV534449", "node_attrs": {"div": 54, "num_date": {"value": 2021.9328767123288, "confidence": [2021.9328767123288, 2021.9328767123288]}, "tsne_y": {"value": 4.204577208503621}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.121.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Schleswig-Holstein"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.2377006378643665}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.001186164257388}, "tsne_x": {"value": 22.84349984383813}, "mds3": {"value": -50.623180808391794}, "umap_x": {"value": 11.07205}, "pca2": {"value": -6.793437962540648}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 11.626216456584766}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.578893}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T209C", "T1075C", "A1682G", "C2065T", "T6949C", "C13168T", "T15750C", "C16726T", "C16877T", "C19859T", "C20468A", "C21648T", "C22082T", "C23557T", "G25996T", "C27638T", "C27737T", "C28146T", "G28396A", "G29690T", "G29779T"], "S": ["T29I", "P174S"]}, "labels": {"aa": "S: T29I, P174S"}}}, {"name": "NODE_0000030", "node_attrs": {"div": 34, "num_date": {"value": 2021.330982135771, "confidence": [2021.1278166656086, 2021.4407364281908]}}, "branch_attrs": {"mutations": {"nuc": ["A10691G"]}}, "children": [{"name": "NODE_0000782", "node_attrs": {"div": 34, "num_date": {"value": 2021.343294274011, "confidence": [2021.1387792812818, 2021.4568605999011]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS4156/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_y": {"value": 5.61519546698146}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.8414978704769576}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.631941437869243}, "tsne_x": {"value": 25.95206832124222}, "mds3": {"value": -35.31793147795642}, "umap_x": {"value": 11.134865}, "pca2": {"value": 3.843473738096816}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 10.386339481130026}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.720785}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A761G", "C1420A", "C3874T", "T7124C", "G13410A", "C19895T", "A21996C", "G24794T", "G25019C", "T27752C", "G29332T"], "S": ["Y145S", "A1078S", "D1153H"]}, "labels": {"aa": "S: Y145S, A1078S, D1153H"}}}, {"name": "SouthAfrica/NHLS-UCT-GP-N316/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.458904109589, "confidence": [2021.458904109589, 2021.458904109589]}, "tsne_y": {"value": 5.943791515629824}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.716789331193102}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.67820126512643}, "tsne_x": {"value": 24.62990566119432}, "mds3": {"value": -34.55807971240268}, "umap_x": {"value": 11.549861}, "pca2": {"value": 1.9169374345258376}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.6002469887634186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.233642}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C11379T", "A13288G", "A16205T", "G29513T"]}}}]}, {"name": "NODE_0000784", "node_attrs": {"div": 34, "num_date": {"value": 2021.40875284971, "confidence": [2021.2360502535375, 2021.445205479452]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS8773/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.445205479452, "confidence": [2021.445205479452, 2021.445205479452]}, "tsne_y": {"value": 6.246525682842795}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.712039593727259}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.0749070602152566}, "tsne_x": {"value": 24.71684645972488}, "mds3": {"value": -27.66029651057964}, "umap_x": {"value": 11.584626}, "pca2": {"value": 3.604008061338033}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.1127785574479416}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.476695}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000786", "node_attrs": {"div": 34, "num_date": {"value": 2021.4407710823994, "confidence": [2021.2346588126866, 2021.4821019021929]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C105931/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_y": {"value": 6.412481624140528}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.628645005437396}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 22.946147242326457}, "tsne_x": {"value": 24.644837730057723}, "mds3": {"value": -28.100753659626942}, "umap_x": {"value": 11.561058}, "pca2": {"value": 8.333188840731035}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.4427526061771605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.496235}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A20713C"]}}}, {"name": "KEN/C106139/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_y": {"value": 6.304906889013064}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.841316995216763}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 12.044124070151982}, "tsne_x": {"value": 25.097646315899706}, "mds3": {"value": -32.188211098990664}, "umap_x": {"value": 11.447883}, "pca2": {"value": 3.9612424065328287}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.5562982102841643}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.547997}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "C9474T", "C21682T", "G24332T", "C27509T", "A28699C"], "S": ["A924S"]}, "labels": {"aa": "S: A924S"}}}]}]}]}]}, {"name": "NODE_0000787", "node_attrs": {"div": 32, "num_date": {"value": 2021.0933072203202, "confidence": [2020.9341837767433, 2021.2455389570603]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000013", "node_attrs": {"div": 33, "num_date": {"value": 2021.1859350041534, "confidence": [2021.018070062807, 2021.3631010102054]}}, "branch_attrs": {"mutations": {"nuc": ["C21304T"]}}, "children": [{"name": "IND/CWS_0080_54315840/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_y": {"value": 7.988911141730888}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.804349627479023}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.009543781111168}, "tsne_x": {"value": 23.0603828215767}, "mds3": {"value": -33.25142140939966}, "umap_x": {"value": 11.192635}, "pca2": {"value": -8.785719041719224}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.6254179310761}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.530124}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T2318A", "A9889G", "A14193G", "A19051G", "G19723A", "-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "T27384C", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "-28271A"], "S": ["X156E", "-157F", "X158R", "X1274*"]}, "labels": {"aa": "S: X156E, -157F, X158R, X1274*"}}}, {"name": "NODE_0000014", "node_attrs": {"div": 36, "num_date": {"value": 2021.3422701982718, "confidence": [2021.2632723220934, 2021.4231682542581]}}, "branch_attrs": {"mutations": {"nuc": ["C9286T", "C23277T", "G24124A"], "S": ["T572I"]}, "labels": {"aa": "S: T572I"}}, "children": [{"name": "NODE_0000017", "node_attrs": {"div": 37, "num_date": {"value": 2021.4099135704985, "confidence": [2021.33808204278, 2021.4342465753425]}}, "branch_attrs": {"mutations": {"nuc": ["C3737T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-C272/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4342465753425, "confidence": [2021.4342465753425, 2021.4342465753425]}, "tsne_y": {"value": 8.090732740683434}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.425185378490663}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.254289539946158}, "tsne_x": {"value": 23.66769227344541}, "mds3": {"value": -31.21476441117575}, "umap_x": {"value": 11.576629}, "pca2": {"value": 5.660536820559435}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.52067652340403}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.294129}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C9603T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-D277/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.5027397260274, "confidence": [2021.5027397260274, 2021.5027397260274]}, "tsne_y": {"value": 8.13947823484727}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.38638039361413}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.4997945354194693}, "tsne_x": {"value": 23.69067098024108}, "mds3": {"value": -33.47645627914701}, "umap_x": {"value": 11.4488125}, "pca2": {"value": 1.8283547150858712}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.754710237605537}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.672796}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C11962G"]}}}]}, {"name": "NODE_0000791", "node_attrs": {"div": 36, "num_date": {"value": 2021.3841098054243, "confidence": [2021.2586899038815, 2021.4253319449904]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000793", "node_attrs": {"div": 36, "num_date": {"value": 2021.464157926412, "confidence": [2021.227875119951, 2021.472602739726]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-C950/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.472602739726, "confidence": [2021.472602739726, 2021.472602739726]}, "tsne_y": {"value": 7.885762851427463}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.846849637978138}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.5858680750239547}, "tsne_x": {"value": 23.885549316259816}, "mds3": {"value": -30.801831203158983}, "umap_x": {"value": 11.632158}, "pca2": {"value": 2.359549448717041}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.608788439329604}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.286588}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000797", "node_attrs": {"div": 36, "num_date": {"value": 2021.4725837358374, "confidence": [2021.2300192406376, 2021.512328344332]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z734/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.8479452054794, "confidence": [2021.8479452054794, 2021.8479452054794]}, "tsne_y": {"value": 8.732993125097767}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.0366434218333066}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.636300569131086}, "tsne_x": {"value": 23.1928822480317}, "mds3": {"value": -46.555037348416015}, "umap_x": {"value": 11.123604}, "pca2": {"value": 1.9224125190251364}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -14.793831389934732}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.631123}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A969G", "T1683C", "G3122A", "C6230T", "A8170G", "T8716C", "C9803T", "G20991A", "A21311C", "G25186T", "G25634T", "T27722C", "G28817T"], "S": ["Q1208H"]}, "labels": {"aa": "S: Q1208H"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-F254/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5767123287671, "confidence": [2021.5767123287671, 2021.5767123287671]}, "tsne_y": {"value": 8.218550841548028}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.8536781881392574}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.6792849667309087}, "tsne_x": {"value": 23.64980956241599}, "mds3": {"value": -35.54247967819924}, "umap_x": {"value": 11.279192}, "pca2": {"value": 1.908721148244092}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.746853545751004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.495067}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C8660T", "C21762T", "G26995T"], "S": ["A67V"]}, "labels": {"aa": "S: A67V"}}}]}]}, {"name": "NODE_0000019", "node_attrs": {"div": 36, "num_date": {"value": 2021.4268048168772, "confidence": [2021.2575684934075, 2021.4287671232876]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-C187/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4287671232876, "confidence": [2021.4287671232876, 2021.4287671232876]}, "tsne_y": {"value": 7.71559807031376}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.997350967022696}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 7.934593785836563}, "tsne_x": {"value": 23.952365014706267}, "mds3": {"value": -30.674637567815683}, "umap_x": {"value": 11.647996}, "pca2": {"value": 3.8576046828101576}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.085453143323379}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.316288}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000799", "node_attrs": {"div": 37, "num_date": {"value": 2021.4660141427912, "confidence": [2021.2257027778576, 2021.5589040952477]}}, "branch_attrs": {"mutations": {"nuc": ["-28271A"]}}, "children": [{"name": "NODE_0000020", "node_attrs": {"div": 38, "num_date": {"value": 2021.5433233736055, "confidence": [2021.3891433946687, 2021.6527045095584]}}, "branch_attrs": {"mutations": {"nuc": ["C2146T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z711/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.7520547945205, "confidence": [2021.7520547945205, 2021.7520547945205]}, "tsne_y": {"value": 8.31030914396835}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.783328228561933}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.370385895052627}, "tsne_x": {"value": 23.71274736192345}, "mds3": {"value": -32.35956679960401}, "umap_x": {"value": 11.400662}, "pca2": {"value": -5.181279195311348}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.186763889926022}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.914841}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G18651A"]}}}, {"name": "SouthAfrica/NHLS-UCT-LA-Z684/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7191780821918, "confidence": [2021.7191780821918, 2021.7191780821918]}, "tsne_y": {"value": 8.595825391563544}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.228792346166257}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.001285408601454}, "tsne_x": {"value": 23.60903018834525}, "mds3": {"value": -31.59694965520364}, "umap_x": {"value": 11.1139}, "pca2": {"value": -11.328211047743354}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -16.273713907265467}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.553968}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G4211A", "C9693T", "G12251T", "A24410G", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C", "C29420T", "C29614T"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}]}, {"name": "NODE_0000803", "node_attrs": {"div": 37, "num_date": {"value": 2021.4723069285594, "confidence": [2021.2279613169576, 2021.5659569459572]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z633/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6260273972603, "confidence": [2021.6260273972603, 2021.6260273972603]}, "tsne_y": {"value": 8.508242809369367}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.984132597649909}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 5.280959195422517}, "tsne_x": {"value": 23.61763055922393}, "mds3": {"value": -31.651900986909368}, "umap_x": {"value": 11.17758}, "pca2": {"value": -3.936113590779132}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.83435492228424}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.331271}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G13975T", "C14790T", "C15251T", "C15540T", "A24410G"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "NODE_0000804", "node_attrs": {"div": 37, "num_date": {"value": 2021.5015580522672, "confidence": [2021.2274232142854, 2021.5664635899511]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-H789/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_y": {"value": 8.475190390127633}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.102701537367416}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 7.38315042126896}, "tsne_x": {"value": 23.64775114639196}, "mds3": {"value": -32.834128025626946}, "umap_x": {"value": 11.13354}, "pca2": {"value": -8.502653354633892}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -13.51881295278797}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.706202}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G5048T", "C5822T", "C10507T", "G16068T", "G25906T", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253C"]}}}, {"name": "NODE_0000805", "node_attrs": {"div": 37, "num_date": {"value": 2021.5355663918692, "confidence": [2021.2250187781422, 2021.5677991711068]}}, "branch_attrs": {"mutations": {"nuc": ["A28271-"]}}, "children": [{"name": "NODE_0000806", "node_attrs": {"div": 37, "num_date": {"value": 2021.5438660432708, "confidence": [2021.2271598058344, 2021.6002574121903]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-AE36/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7794520547945, "confidence": [2021.7794520547945, 2021.7794520547945]}, "tsne_y": {"value": 8.513493451622304}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.880496584992475}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 1.8724425369332487}, "tsne_x": {"value": 23.630410013428016}, "mds3": {"value": -31.13171182391317}, "umap_x": {"value": 11.152143}, "pca2": {"value": -10.721556108473576}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.85598985692744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.899534}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C4068T", "C4331T", "C8964T", "C16985T", "C17410T", "G21255T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AC33/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7410958904109, "confidence": [2021.7410958904109, 2021.7410958904109]}, "tsne_y": {"value": 8.535178217412643}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.520820652072459}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.338250916314983}, "tsne_x": {"value": 23.601103033772056}, "mds3": {"value": -37.032521258455965}, "umap_x": {"value": 11.142253}, "pca2": {"value": -15.467780125754542}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 8.984664621195154}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.25935}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A3423G", "T4063C", "C4901T", "C8541T", "A11319G", "C22224T"], "S": ["S221L"]}, "labels": {"aa": "S: S221L"}}}]}, {"name": "NODE_0000808", "node_attrs": {"div": 37, "num_date": {"value": 2021.5449181924612, "confidence": [2021.2261452192286, 2021.5860307354887]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-LA-Z696/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7328767123288, "confidence": [2021.7328767123288, 2021.7328767123288]}, "tsne_y": {"value": 8.60006848619455}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.7685832486697874}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.537843034360981}, "tsne_x": {"value": 23.54934653541008}, "mds3": {"value": -35.10059964196761}, "umap_x": {"value": 11.084444}, "pca2": {"value": -4.370895030604037}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -15.997829529387648}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.283093}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3602T", "C8502T", "C9438T", "C20946T", "C22414T", "C26028T", "-28271A"]}}}, {"name": "SouthAfrica/NHLS-UCT-LA-Z728/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.8123287671233, "confidence": [2021.8123287671233, 2021.8123287671233]}, "tsne_y": {"value": 8.799831812561838}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.32"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.32"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 2.296753133805935}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 21.1805201999774}, "tsne_x": {"value": 23.13063317282881}, "mds3": {"value": -46.08010779568432}, "umap_x": {"value": 11.107189}, "pca2": {"value": 3.017013248518269}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 10.888257585897616}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.582193}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G702A", "G1544T", "G2875C", "C4012T", "C7777T", "G17019A", "G19677T", "G19684C", "C22227T", "G23948T", "C25611A", "G26428T", "G28817T"], "S": ["A222V", "D796Y"]}, "labels": {"aa": "S: A222V, D796Y"}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000809", "node_attrs": {"div": 32, "num_date": {"value": 2021.1097102103338, "confidence": [2020.940312410048, 2021.2598736721377]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000095", "node_attrs": {"div": 34, "num_date": {"value": 2021.2117742104494, "confidence": [2021.0513020517915, 2021.420838108632]}}, "branch_attrs": {"mutations": {"nuc": ["C9144T", "C22783T"]}}, "children": [{"name": "NZL/21MV0630/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5493150684931, "confidence": [2021.5493150684931, 2021.5493150684931]}, "tsne_y": {"value": 5.262596884954164}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 2.5219144708507044}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.958251855466514}, "tsne_x": {"value": 23.183413259987347}, "mds3": {"value": -37.66374743573565}, "umap_x": {"value": 11.315357}, "pca2": {"value": 0.2247837596474051}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.2083997532961348}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.908402}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A708C", "C11095A", "C11747T", "G12332T", "G17193T", "C18463T", "G25244T"], "S": ["V1228L"]}, "labels": {"aa": "S: V1228L"}}}, {"name": "NODE_0000096", "node_attrs": {"div": 36, "num_date": {"value": 2021.3281192472587, "confidence": [2021.1785434249673, 2021.4802499789091]}}, "branch_attrs": {"mutations": {"nuc": ["C10279T", "C27128T"]}}, "children": [{"name": "NZL/21MV0652/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5712328767124, "confidence": [2021.5712328767124, 2021.5712328767124]}, "tsne_y": {"value": 5.504960214398202}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.706224219771684}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.336255302433653}, "tsne_x": {"value": 22.516722995005527}, "mds3": {"value": -37.71837207163261}, "umap_x": {"value": 11.020733}, "pca2": {"value": 0.384578446753803}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.458024863924303}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.426661}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T195C", "T11542C", "C13026T", "C19273T", "G22225T", "G27074T", "C28819T"]}}}, {"name": "NODE_0000097", "node_attrs": {"div": 39, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5023780367583, 2021.5301369863014]}}, "branch_attrs": {"mutations": {"nuc": ["G3638A", "C11884T", "G27987T"]}}, "children": [{"name": "NZL/21MV0614/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5438356164384, "confidence": [2021.5438356164384, 2021.5438356164384]}, "tsne_y": {"value": 5.602421514331498}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 4.2510215635986}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 32.758873364284106}, "tsne_x": {"value": 22.86505663220824}, "mds3": {"value": -36.13885086116944}, "umap_x": {"value": 11.313162}, "pca2": {"value": -1.5961722699835532}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.910183256808482}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.189304}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0597/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.535616438356, "confidence": [2021.535616438356, 2021.535616438356]}, "tsne_y": {"value": 5.563419272413825}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 13.628126987462393}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.95425597761209}, "tsne_x": {"value": 22.956397056849628}, "mds3": {"value": -33.66138957281024}, "umap_x": {"value": 11.517296}, "pca2": {"value": 0.2360115622174352}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.0661941256050085}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.196897}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0599/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5301369863014, 2021.5301369863014]}, "tsne_y": {"value": 5.611352929149277}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.82"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.099509025917172}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 8.853979258419358}, "tsne_x": {"value": 22.92642909697083}, "mds3": {"value": -33.54150798300622}, "umap_x": {"value": 11.558575}, "pca2": {"value": 2.233545622182003}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.0960431271113894}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.154834}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000813", "node_attrs": {"div": 32, "num_date": {"value": 2021.1289742398503, "confidence": [2020.943034702735, 2021.2738473089653]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000814", "node_attrs": {"div": 32, "num_date": {"value": 2021.1626263478797, "confidence": [2020.9168402463629, 2021.3389902337133]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000038", "node_attrs": {"div": 35, "num_date": {"value": 2021.2806879419923, "confidence": [2021.0855979835032, 2021.470651083486]}}, "branch_attrs": {"mutations": {"nuc": ["A11456G", "G29050A", "C29509T"]}}, "children": [{"name": "USA/CA-CDC-FG-108784/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_y": {"value": 6.794129810822794}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.944170561041931}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.120511475475696}, "tsne_x": {"value": 27.200115255897742}, "mds3": {"value": -40.52802334860254}, "umap_x": {"value": 11.065284}, "pca2": {"value": -4.087509103858479}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -14.600820104505704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.246863}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C190T", "G1957A", "C5784T", "G7328T", "A10075G", "T15114C", "C20628T", "G29747T", "C29750T"]}}}, {"name": "NODE_0000039", "node_attrs": {"div": 37, "num_date": {"value": 2021.403827887221, "confidence": [2021.2258452795218, 2021.4866305553403]}}, "branch_attrs": {"mutations": {"nuc": ["T23284C", "C25339T"]}}, "children": [{"name": "NODE_0000817", "node_attrs": {"div": 37, "num_date": {"value": 2021.535013389977, "confidence": [2021.1749601710085, 2021.7552311343163]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-CDC-ATM-FUCRJ47KJ/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9082191780822, "confidence": [2021.9082191780822, 2021.9082191780822]}, "tsne_y": {"value": 6.697512082357362}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.474417382422127}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.601221575191279}, "tsne_x": {"value": 27.733758973942606}, "mds3": {"value": -45.08963237385144}, "umap_x": {"value": 11.067397}, "pca2": {"value": -5.898620716449787}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -14.524453171822152}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.683213}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "G3404A", "T8729G", "A18836G", "C20405T", "T21722C", "C25613T", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "G29711T", "A29725G", "C29730T"]}}}, {"name": "NODE_0000818", "node_attrs": {"div": 37, "num_date": {"value": 2021.5886996454892, "confidence": [2021.1915317565474, 2021.7666664811436]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-CDCBI-CRSP_L54TI5OIBNCOCVVM/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.9246575342465, "confidence": [2021.9246575342465, 2021.9246575342465]}, "tsne_y": {"value": 6.7109966477649445}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.049001726546083}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.288683401355836}, "tsne_x": {"value": 27.62010748204282}, "mds3": {"value": -40.38410879559231}, "umap_x": {"value": 11.019798}, "pca2": {"value": -11.298161113636445}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.84402809770585}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.365086}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C18252T", "T22669C", "G23401T", "C25583T", "A25589T", "G25687A"], "S": ["Q613H"]}, "labels": {"aa": "S: Q613H"}}}, {"name": "USA/SC-CDC-LC0371098/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8397260273973, "confidence": [2021.8397260273973, 2021.8397260273973]}, "tsne_y": {"value": 6.729921190723078}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Carolina"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.232815512633929}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.207455077114254}, "tsne_x": {"value": 27.526853311229065}, "mds3": {"value": -37.57838434189405}, "umap_x": {"value": 11.275105}, "pca2": {"value": 7.916063079954308}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.24453845592841}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.598769}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C4999T", "G16206T", "G21538T", "C21910T"]}}}]}]}, {"name": "NODE_0000826", "node_attrs": {"div": 37, "num_date": {"value": 2021.417716202235, "confidence": [2021.2316670349026, 2021.4890410958903]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MO-CDC-QDX26343566/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4890410958903, "confidence": [2021.4890410958903, 2021.4890410958903]}, "tsne_y": {"value": 6.729686186503105}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Missouri"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.770177023646552}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.3474556597917844}, "tsne_x": {"value": 27.50415344937037}, "mds3": {"value": -36.21229676291386}, "umap_x": {"value": 11.543787}, "pca2": {"value": 0.3895882169535041}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.089263216524886}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.809607}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C5822T", "C29171T"]}}}, {"name": "NODE_0000043", "node_attrs": {"div": 38, "num_date": {"value": 2021.4618835836961, "confidence": [2021.2498230951148, 2021.5383203602235]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NODE_0000044", "node_attrs": {"div": 41, "num_date": {"value": 2021.5375196033808, "confidence": [2021.3947636535052, 2021.6030038797521]}}, "branch_attrs": {"mutations": {"nuc": ["G3644T", "C18115T", "C20199T"]}}, "children": [{"name": "USA/AK-PHL12873/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_y": {"value": 6.719763793896872}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.3.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Alaska"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 22.9518493600718}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 39.95220573392309}, "tsne_x": {"value": 27.76662878735933}, "mds3": {"value": -27.6326102935996}, "umap_x": {"value": 11.1648855}, "pca2": {"value": 16.127356051390212}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.918437403401228}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.645979}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G9136T", "G9832T", "T23398C", "G25784T", "G28461A", "G29511T"]}}}, {"name": "USA/PA-BOL-M21128208/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_y": {"value": 6.6901514599803065}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Pennsylvania"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.83351280396667}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.39425115095062}, "tsne_x": {"value": 27.82290154546866}, "mds3": {"value": -41.41034594094814}, "umap_x": {"value": 11.097868}, "pca2": {"value": -5.217707001018987}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -19.73286532760397}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.581743}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1102T", "T10270C", "G10870T", "C20844T", "T22063G", "G22592T", "C23896T", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-"], "S": ["A344S"]}, "labels": {"aa": "S: A344S"}}}]}, {"name": "NODE_0000821", "node_attrs": {"div": 38, "num_date": {"value": 2021.4746037886282, "confidence": [2021.2542442314102, 2021.5492021727284]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/GA-CDC-ASC210191982/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6041095890412, "confidence": [2021.6041095890412, 2021.6041095890412]}, "tsne_y": {"value": 6.77981136842612}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Georgia"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.68967920643646}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.858049007651203}, "tsne_x": {"value": 27.622923500933187}, "mds3": {"value": -33.95661987956692}, "umap_x": {"value": 11.149445}, "pca2": {"value": 15.506443140723295}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -16.39363015218226}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.312671}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T2083C", "T19909G", "G21770A", "G22093A", "A25405G", "A26021C"], "S": ["V70I", "M177I"]}, "labels": {"aa": "S: V70I, M177I"}}}, {"name": "NODE_0000822", "node_attrs": {"div": 38, "num_date": {"value": 2021.536914956983, "confidence": [2021.2205327434228, 2021.5806999162148]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-CDC-ASC210321914/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7438356164384, "confidence": [2021.7438356164384, 2021.7438356164384]}, "tsne_y": {"value": 6.792577564348567}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 9.462718275384429}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 43.42113180077423}, "tsne_x": {"value": 27.71494206681751}, "mds3": {"value": -34.27703110542061}, "umap_x": {"value": 11.05749}, "pca2": {"value": 15.52516580347127}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -17.81187754957503}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.2267475}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "G1458T", "C2334T", "G4454A", "C14925T", "A16512G", "C16887T"]}}}, {"name": "NODE_0000825", "node_attrs": {"div": 38, "num_date": {"value": 2021.5710852774528, "confidence": [2021.2225995034355, 2021.6347335652727]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-CDC-IBX356611745195/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6671232876713, "confidence": [2021.6671232876713, 2021.6671232876713]}, "tsne_y": {"value": 6.763112029658801}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 9.927169200398184}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 33.01535456958556}, "tsne_x": {"value": 27.42898361565581}, "mds3": {"value": -30.6603358696268}, "umap_x": {"value": 11.486585}, "pca2": {"value": 16.777369502155942}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.526300503576207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.219653}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G25785T"]}}}, {"name": "NODE_0000046", "node_attrs": {"div": 46, "num_date": {"value": 2021.8526098030304, "confidence": [2021.7761829787291, 2021.9008777118104]}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "T6760G", "C16260T", "G19947T", "A21625G", "G25606A", "T28078C", "C28146T"]}}, "children": [{"name": "BHR/21922064480_S5_L001/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.9356164383562, "confidence": [2021.9356164383562, 2021.9356164383562]}, "tsne_y": {"value": 6.7372136981512805}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.868191444481441}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.961186996538878}, "tsne_x": {"value": 28.19009772527602}, "mds3": {"value": -37.54406774722094}, "umap_x": {"value": 11.009343}, "pca2": {"value": 13.62795933493638}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -19.891139785026617}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.316928}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C27673T"]}}}, {"name": "BHR/21760073544_S50_L001/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_y": {"value": 6.7345648179858895}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.3"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.090119641790878}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -8.182506719625577}, "tsne_x": {"value": 28.21812403562127}, "mds3": {"value": -39.03261523533481}, "umap_x": {"value": 11.070947}, "pca2": {"value": 9.262293712194303}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -20.63543218102016}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.723109}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T1871G", "C2334T"]}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0000827", "node_attrs": {"div": 32, "num_date": {"value": 2021.1875835015353, "confidence": [2021.013303964357, 2021.3496128745846]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000106", "node_attrs": {"div": 33, "num_date": {"value": 2021.332384615368, "confidence": [2021.0421175585927, 2021.5297284701396]}}, "branch_attrs": {"mutations": {"nuc": ["G1048T"]}}, "children": [{"name": "NODE_0000107", "node_attrs": {"div": 36, "num_date": {"value": 2021.4627101049891, "confidence": [2021.2034696401333, 2021.6019949047513]}}, "branch_attrs": {"mutations": {"nuc": ["C13378T", "C24064T", "G29332T"]}}, "children": [{"name": "SYC/SS3565/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_y": {"value": 5.704510616965277}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Seychelles"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.510307056304626}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 23.988137939418625}, "tsne_x": {"value": 21.31713128470012}, "mds3": {"value": -35.86538092724137}, "umap_x": {"value": 10.978897}, "pca2": {"value": 8.379791996494466}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -17.378853437362867}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.723181}, "country": {"value": "Seychelles"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1063T", "C3903T", "C6070T", "G8525A", "T14976C", "C15037T", "T19737C", "T25709C"]}}}, {"name": "NODE_0000108", "node_attrs": {"div": 39, "num_date": {"value": 2021.6359748935854, "confidence": [2021.509944635427, 2021.679883898552]}}, "branch_attrs": {"mutations": {"nuc": ["A4864G", "T11218C", "G25855T"]}}, "children": [{"name": "NODE_0000110", "node_attrs": {"div": 40, "num_date": {"value": 2021.6879884216823, "confidence": [2021.628156911874, 2021.6890410958904]}}, "branch_attrs": {"mutations": {"nuc": ["G6169A"]}}, "children": [{"name": "SYC/SS3522/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_y": {"value": 5.906724981014598}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Seychelles"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.727309122606655}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 19.97052925217612}, "tsne_x": {"value": 21.40397080645177}, "mds3": {"value": -32.92046036387239}, "umap_x": {"value": 11.235354}, "pca2": {"value": 6.703874679283759}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.113280681828424}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.431721}, "country": {"value": "Seychelles"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "SYC/SS3953/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_y": {"value": 5.921997661972473}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Seychelles"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.65512917048428}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.010050562655104}, "tsne_x": {"value": 21.28187642648423}, "mds3": {"value": -37.72089136651892}, "umap_x": {"value": 11.125984}, "pca2": {"value": 1.2904960211422134}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -10.608957818600436}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.521072}, "country": {"value": "Seychelles"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2741T", "C12085T"]}}}]}, {"name": "NODE_0000834", "node_attrs": {"div": 39, "num_date": {"value": 2021.6616152681358, "confidence": [2021.5177368507766, 2021.712989892575]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SYC/SS3935/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7794520547945, "confidence": [2021.7794520547945, 2021.7794520547945]}, "tsne_y": {"value": 5.914936856439269}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Seychelles"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.5826115487206}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.2895588034746384}, "tsne_x": {"value": 21.27336344515796}, "mds3": {"value": -34.79834441481839}, "umap_x": {"value": 11.40356}, "pca2": {"value": 1.5526184363706863}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.214794001953072}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.681726}, "country": {"value": "Seychelles"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T8986C", "C11173T", "C28093T"]}}}, {"name": "SYC/SS4681/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.8643835616438, "confidence": [2021.8643835616438, 2021.8643835616438]}, "tsne_y": {"value": 5.929830690283309}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Seychelles"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.01753902296151}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.2313015160707126}, "tsne_x": {"value": 21.31127622253448}, "mds3": {"value": -27.96073615307651}, "umap_x": {"value": 11.35533}, "pca2": {"value": 5.130594010397257}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.9806493405882806}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.932204}, "country": {"value": "Seychelles"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G6576T", "G16377A", "C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}]}]}, {"name": "NODE_0000111", "node_attrs": {"div": 34, "num_date": {"value": 2021.4046534428132, "confidence": [2021.1350854802786, 2021.5926430453867]}}, "branch_attrs": {"mutations": {"nuc": ["C27527T"]}}, "children": [{"name": "NODE_0000116", "node_attrs": {"div": 35, "num_date": {"value": 2021.4690271220884, "confidence": [2021.1837288159688, 2021.608874173354]}}, "branch_attrs": {"mutations": {"nuc": ["G20937T"]}}, "children": [{"name": "IMS-10116-CVDP-6BD890C1-0494-4FAC-A5EE-9729147E08D9", "node_attrs": {"div": 43, "num_date": {"value": 2021.6753424657534, "confidence": [2021.6753424657534, 2021.6753424657534]}, "tsne_y": {"value": 7.310996936309701}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.485759235231852}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.023382475983964}, "tsne_x": {"value": 25.75127657131944}, "mds3": {"value": -37.30331752518202}, "umap_x": {"value": 11.042278}, "pca2": {"value": 18.96024283987268}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.464387407629786}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.450734}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3117T", "A5371T", "G6358T", "G6865T", "A9274G", "C15579T", "T21644C", "C26195T"], "S": ["Y28H"]}, "labels": {"aa": "S: Y28H"}}}, {"name": "NODE_0000837", "node_attrs": {"div": 35, "num_date": {"value": 2021.534956614448, "confidence": [2021.1780989675256, 2021.6165126088088]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "FRA/IHUCOVID-049050_Nova1/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8917808219178, "confidence": [2021.8917808219178, 2021.8917808219178]}, "tsne_y": {"value": 7.4093514388123}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 4.808109399721053}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 37.73774101696412}, "tsne_x": {"value": 26.038100201142026}, "mds3": {"value": -42.33577730965568}, "umap_x": {"value": 11.047877}, "pca2": {"value": 7.858257526563315}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.306158633404927}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.2304}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A4548G", "G11114T", "G12769A", "C15352T", "C19586T", "G21624C", "C22281T", "C29375A", "G29779T"], "S": ["R21T", "T240I"]}, "labels": {"aa": "S: R21T, T240I"}}}, {"name": "OV231563", "node_attrs": {"div": 44, "num_date": {"value": 2021.8917808219178, "confidence": [2021.8917808219178, 2021.8917808219178]}, "tsne_y": {"value": 7.278665189133307}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Baden-Wuerttemberg"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.39421137510098}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.002757764795871}, "tsne_x": {"value": 25.829321626796563}, "mds3": {"value": -35.58078172762824}, "umap_x": {"value": 10.960724}, "pca2": {"value": 18.96038762022945}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -15.482016512451072}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.582225}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "A2908G", "C7420T", "C18591G", "C19554T", "C19961T", "C22264T", "T25514C", "C26537T"]}}}]}]}, {"name": "NODE_0000838", "node_attrs": {"div": 34, "num_date": {"value": 2021.4629785817078, "confidence": [2021.1354182075859, 2021.5901011034562]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000845", "node_attrs": {"div": 34, "num_date": {"value": 2021.4931343716005, "confidence": [2021.1430446289962, 2021.5976123672876]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0774/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.631506849315, "confidence": [2021.631506849315, 2021.631506849315]}, "tsne_y": {"value": 7.175483529879668}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.501156212905865}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.758158046268388}, "tsne_x": {"value": 25.09458421071659}, "mds3": {"value": -30.654377718209258}, "umap_x": {"value": 11.543911}, "pca2": {"value": 2.9255348944244624}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.820839281748678}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.200958}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A2816G", "G20683T", "T23600C", "C27526T"], "S": ["S680P"]}, "labels": {"aa": "S: S680P"}}}, {"name": "KAZ/55_02/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_y": {"value": 7.109175728803591}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kazakhstan"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.384563463186744}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 2.4195016095753856}, "tsne_x": {"value": 24.667401800333145}, "mds3": {"value": -33.10020669222265}, "umap_x": {"value": 11.491294}, "pca2": {"value": 29.72219409058744}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.699326235459091}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.994392}, "country": {"value": "Kazakhstan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C6706T", "C25513T", "G26314A", "C29236T"]}}}]}, {"name": "NODE_0000112", "node_attrs": {"div": 35, "num_date": {"value": 2021.5369242162074, "confidence": [2021.1961208959572, 2021.6128727775024]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "BHR/342548282/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_y": {"value": 7.279028436639566}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 13.99911181277534}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 54.66174954302552}, "tsne_x": {"value": 25.191045817713608}, "mds3": {"value": -32.62183957987156}, "umap_x": {"value": 11.43741}, "pca2": {"value": -8.17842637392278}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.162300659744176}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.331445}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T1871G", "A2903G", "T7489G", "C9286T", "C25680T"]}}}, {"name": "NODE_0000847", "node_attrs": {"div": 35, "num_date": {"value": 2021.5458608258436, "confidence": [2021.2032053423954, 2021.6371768256754]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KOR/KD-Cov-D10/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.9246575342465, "confidence": [2021.9246575342465, 2021.9246575342465]}, "tsne_y": {"value": 7.273287832392946}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Korea"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.167259008456446}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.2808718571833624}, "tsne_x": {"value": 25.027730214000982}, "mds3": {"value": -31.79750695021672}, "umap_x": {"value": 11.471527}, "pca2": {"value": 0.3969544715328524}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.914480565551785}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.980628}, "country": {"value": "South Korea"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1060T", "C19380T", "C21058T", "C27526T"]}}}, {"name": "OU965918", "node_attrs": {"div": 43, "num_date": {"value": 2021.7575342465752, "confidence": [2021.7575342465752, 2021.7575342465752]}, "tsne_y": {"value": 7.555752406143523}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Schleswig-Holstein"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.862385951952245}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.963410160743231}, "tsne_x": {"value": 25.521889100103323}, "mds3": {"value": -34.657539038851866}, "umap_x": {"value": 11.125654}, "pca2": {"value": -6.837377682590993}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -14.7171689099015}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.201375}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G370T", "G571T", "G4261A", "G6266A", "C8240T", "C8697T", "A10508G", "C11050T"]}}}]}]}]}]}]}, {"name": "NODE_0000848", "node_attrs": {"div": 32, "num_date": {"value": 2021.205834015259, "confidence": [2021.0155120869586, 2021.3597896899744]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000852", "node_attrs": {"div": 32, "num_date": {"value": 2021.2378488509837, "confidence": [2021.0136227223434, 2021.3689704666492]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000100", "node_attrs": {"div": 33, "num_date": {"value": 2021.337718289834, "confidence": [2021.096609528585, 2021.6203847513084]}}, "branch_attrs": {"mutations": {"nuc": ["A21647G"], "S": ["T29A"]}, "labels": {"aa": "S: T29A"}}, "children": [{"name": "OV343938", "node_attrs": {"div": 39, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_y": {"value": 5.749329565416234}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Hesse"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.1269604593591227}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 2.186297001675311}, "tsne_x": {"value": 23.74017928320907}, "mds3": {"value": -34.56384020167559}, "umap_x": {"value": 11.249042}, "pca2": {"value": 1.0252717094655368}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 6.031535761633888}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.333664}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C11152T", "G16377T", "A20511G", "C22311T", "C23325T", "G28872T"], "S": ["T250I", "T588I"]}, "labels": {"aa": "S: T250I, T588I"}}}, {"name": "NODE_0000101", "node_attrs": {"div": 39, "num_date": {"value": 2021.786893388801, "confidence": [2021.6785127817943, 2021.8464604935775]}}, "branch_attrs": {"mutations": {"nuc": ["C15857T", "A19116G", "G20937A", "A21987G", "G22899T", "G29688T"], "S": ["D142G", "G446V"]}, "labels": {"aa": "S: D142G, G446V"}}, "children": [{"name": "BHR/21921837867_S37_L001/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.8479452054794, "confidence": [2021.8479452054794, 2021.8479452054794]}, "tsne_y": {"value": 7.625018690389047}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.357180218239288}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 16.706594671242204}, "tsne_x": {"value": 26.081934831591788}, "mds3": {"value": -32.98929090904296}, "umap_x": {"value": 11.377836}, "pca2": {"value": -11.487657724900176}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.075685318332274}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.1391115}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C22311T"], "S": ["T250I"]}, "labels": {"aa": "S: T250I"}}}, {"name": "BHR/21921940348_S54_L001/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.886301369863, "confidence": [2021.886301369863, 2021.886301369863]}, "tsne_y": {"value": 7.610151918391641}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 11.752261936258664}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 45.59857803815596}, "tsne_x": {"value": 26.1403922482264}, "mds3": {"value": -33.44977709730929}, "umap_x": {"value": 11.353478}, "pca2": {"value": -5.983988291795017}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.43222565325324}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.17683}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T1871G", "A2903G"]}}}]}]}, {"name": "NODE_0000052", "node_attrs": {"div": 36, "num_date": {"value": 2021.3283615000703, "confidence": [2021.2277801434054, 2021.3920087639465]}}, "branch_attrs": {"mutations": {"nuc": ["C6040T", "C7926T", "T14014G", "A29700G"]}}, "children": [{"name": "USA/CA-CDC-FG-035638/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.3958904109588, "confidence": [2021.3958904109588, 2021.3958904109588]}, "tsne_y": {"value": 7.704044385187777}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.351851901808052}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.105227316773103}, "tsne_x": {"value": 21.885332441857}, "mds3": {"value": -36.60475967245142}, "umap_x": {"value": 11.430309}, "pca2": {"value": -4.218237162242457}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.004050670161968}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.504933}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C11919T", "C15981T", "C25731T", "T28438C"]}}}, {"name": "NODE_0000856", "node_attrs": {"div": 36, "num_date": {"value": 2021.3745200465976, "confidence": [2021.238499663416, 2021.5329329973858]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000056", "node_attrs": {"div": 37, "num_date": {"value": 2021.534998492855, "confidence": [2021.4278145862152, 2021.5894086562034]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "USA/MN-CDC-IBX318744860138/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.8753424657534, "confidence": [2021.8753424657534, 2021.8753424657534]}, "tsne_y": {"value": 7.714048578297791}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 5.639088161395448}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 43.335235576358805}, "tsne_x": {"value": 22.08316764640752}, "mds3": {"value": -33.561213522135006}, "umap_x": {"value": 11.351321}, "pca2": {"value": -8.662368929670352}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.070888345809907}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.680408}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C494A", "C12738T", "G13427A"]}}}, {"name": "USA/WA-CDC-UW21080884892/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6013698630136, "confidence": [2021.6013698630136, 2021.6013698630136]}, "tsne_y": {"value": 7.710218893299557}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 9.217481453489812}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 3.353726417763138}, "tsne_x": {"value": 22.16778064765184}, "mds3": {"value": -30.829490562840306}, "umap_x": {"value": 11.452759}, "pca2": {"value": 30.29704307235637}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.788032463272914}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.047732}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G23593T", "C28236T", "-28271A"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}]}, {"name": "NODE_0000858", "node_attrs": {"div": 36, "num_date": {"value": 2021.4111495749119, "confidence": [2021.2386233831578, 2021.5439621124776]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDPH-500037284/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_y": {"value": 7.85429418068602}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.8990223682886364}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.2038766379116006}, "tsne_x": {"value": 21.582816657590303}, "mds3": {"value": -45.303998061624085}, "umap_x": {"value": 11.127415}, "pca2": {"value": 12.65733639743167}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.846781995562156}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.7948265}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2229A", "G4261A", "C5301T", "T7248G", "C9491T", "A18585G", "C18657A", "G21204T", "T27939G", "G29579T"]}}}, {"name": "NODE_0000053", "node_attrs": {"div": 39, "num_date": {"value": 2021.554794520548, "confidence": [2021.5160859575892, 2021.554794520548]}}, "branch_attrs": {"mutations": {"nuc": ["C6638T", "C16726T", "G28073T"]}}, "children": [{"name": "USA/CA-CDC-LC0169745/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_y": {"value": 7.697590702213299}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.156004835181055}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.218822035525898}, "tsne_x": {"value": 21.878126540470856}, "mds3": {"value": -35.654875948424845}, "umap_x": {"value": 11.210189}, "pca2": {"value": 7.939546320179592}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.586459064772588}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.280634}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000863", "node_attrs": {"div": 39, "num_date": {"value": 2021.5653434287237, "confidence": [2021.5320364595548, 2021.658181093656]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDC-MMB10737841/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7410958904109, "confidence": [2021.7410958904109, 2021.7410958904109]}, "tsne_y": {"value": 7.742345399353553}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Colorado"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.865276921797076}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.1319203412024033}, "tsne_x": {"value": 21.700317180365168}, "mds3": {"value": -35.8750118418355}, "umap_x": {"value": 11.225662}, "pca2": {"value": -1.4784792896497327}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 7.178530674108617}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.351757}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "C2388T", "G27469A"]}}}, {"name": "USA/VT-CDCBI-CRSP_QR6PCV5ZJ7OLSDJZ/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7630136986302, "confidence": [2021.7630136986302, 2021.7630136986302]}, "tsne_y": {"value": 7.764144394640471}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.44"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Vermont"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.951260276880943}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.851127398940841}, "tsne_x": {"value": 21.700590947480933}, "mds3": {"value": -40.59353013081583}, "umap_x": {"value": 11.090849}, "pca2": {"value": -16.97179928392642}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.4875696738064015}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.54844}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C10641T", "G25621T", "T29512G"]}}}]}]}]}]}]}]}, {"name": "NODE_0000864", "node_attrs": {"div": 32, "num_date": {"value": 2021.2360302061459, "confidence": [2020.9963717235507, 2021.3492603723357]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000064", "node_attrs": {"div": 34, "num_date": {"value": 2021.3956817236792, "confidence": [2021.228162139896, 2021.5180192227122]}}, "branch_attrs": {"mutations": {"nuc": ["G13812T", "C25413T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-E190/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.554794520548, "confidence": [2021.554794520548, 2021.554794520548]}, "tsne_y": {"value": 6.601356644142327}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.651725940126042}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 7.929133474065441}, "tsne_x": {"value": 24.70780485784419}, "mds3": {"value": -32.22614149567599}, "umap_x": {"value": 11.474815}, "pca2": {"value": 3.66580851739068}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.625758506869741}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.969241}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G246T", "C13548T", "C15852T", "T25496C"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AE91/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.823287671233, "confidence": [2021.823287671233, 2021.823287671233]}, "tsne_y": {"value": 6.4049256065172}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.45"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 11.319971156358491}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 50.6097187607114}, "tsne_x": {"value": 25.00455414287987}, "mds3": {"value": -29.53319026026984}, "umap_x": {"value": 11.612975}, "pca2": {"value": 1.3669817828092}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.130351527552002}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.189925}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G8863T", "C25614T", "C28214T", "C29733T"]}}}]}, {"name": "NODE_0000867", "node_attrs": {"div": 32, "num_date": {"value": 2021.2559210548657, "confidence": [2020.996475401268, 2021.3507471550136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000868", "node_attrs": {"div": 32, "num_date": {"value": 2021.2794059412984, "confidence": [2020.9962702900361, 2021.3553523274645]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000102", "node_attrs": {"div": 33, "num_date": {"value": 2021.332486228862, "confidence": [2021.137701341356, 2021.3959830789013]}}, "branch_attrs": {"mutations": {"nuc": ["C10977T"]}}, "children": [{"name": "UGA/MUWRP-KIR210120S/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3986301369864, "confidence": [2021.3986301369864, 2021.3986301369864]}, "tsne_y": {"value": 6.732341399146105}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.46.5"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Uganda"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.07079184846718}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.34834955432486}, "tsne_x": {"value": 24.327082914778995}, "mds3": {"value": -31.69268870320523}, "umap_x": {"value": 11.599848}, "pca2": {"value": 0.3876360224401156}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.771470977479685}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.158055}, "country": {"value": "Uganda"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T8835C", "C15569T"]}}}, {"name": "NODE_0000870", "node_attrs": {"div": 33, "num_date": {"value": 2021.3719962616483, "confidence": [2021.135467967429, 2021.5454187334287]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UGA/MUWRP-KIR210318S/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_y": {"value": 6.86510735337557}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Uganda"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.281574019245026}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.352212287140552}, "tsne_x": {"value": 24.134056439507987}, "mds3": {"value": -34.893066016254565}, "umap_x": {"value": 11.492552}, "pca2": {"value": 0.3919258329803465}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.6644674546907305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.241239}, "country": {"value": "Uganda"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T16688C", "C17285T", "A17621G", "T23032G", "C27920T"], "S": ["F490L"]}, "labels": {"aa": "S: F490L"}}}, {"name": "NODE_0000874", "node_attrs": {"div": 33, "num_date": {"value": 2021.4196360924307, "confidence": [2021.133495808495, 2021.5743451189082]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Switzerland/SG-ETHZ-33903500/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6561643835616, "confidence": [2021.6561643835616, 2021.6561643835616]}, "tsne_y": {"value": 6.968400796106186}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.46.6"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Sankt Gallen"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.857107158540463}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.346843108560829}, "tsne_x": {"value": 24.05336498593418}, "mds3": {"value": -34.66726051458382}, "umap_x": {"value": 11.355056}, "pca2": {"value": 0.3931778622476098}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.778669585962106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.978772}, "country": {"value": "Switzerland"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2035T", "C6310T", "C8326T", "C10605T", "A15677G", "G21518T"]}}}, {"name": "KEN/C111535/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_y": {"value": 6.814346661814756}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.349950121959775}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.494301485993365}, "tsne_x": {"value": 24.112394594511155}, "mds3": {"value": -32.16675687019601}, "umap_x": {"value": 11.53981}, "pca2": {"value": 18.124379587047127}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.108177325464083}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.171989}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G410T", "G5992T", "A11298G", "G18905A", "T23293A"]}}}]}]}]}, {"name": "NODE_0000059", "node_attrs": {"div": 35, "num_date": {"value": 2021.3737931675275, "confidence": [2021.270707269532, 2021.4460652794978]}}, "branch_attrs": {"mutations": {"nuc": ["C1404T", "C4752T", "G25352T"], "S": ["V1264L"]}, "labels": {"aa": "S: V1264L"}}, "children": [{"name": "NZL/21CH0040/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4534246575342, "confidence": [2021.4534246575342, 2021.4534246575342]}, "tsne_y": {"value": 6.5405817167924605}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.23"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 5.925783741088352}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 45.96628409696026}, "tsne_x": {"value": 24.25407089219052}, "mds3": {"value": -30.51523440333301}, "umap_x": {"value": 11.580513}, "pca2": {"value": -0.6146105446034024}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.6066202790831787}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.403918}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A15914C", "G26660T"]}}}, {"name": "NODE_0000876", "node_attrs": {"div": 35, "num_date": {"value": 2021.4055536214705, "confidence": [2021.270593743729, 2021.454070197711]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0571/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5082191780823, "confidence": [2021.5082191780823, 2021.5082191780823]}, "tsne_y": {"value": 6.627130813252596}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.23"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.707145984923237}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.262304777865232}, "tsne_x": {"value": 24.017168845101136}, "mds3": {"value": -35.81662208084352}, "umap_x": {"value": 11.367881}, "pca2": {"value": 12.003925762861993}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.242768109206186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.9487095}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C6040T", "C15857T", "G18636T", "G27676T"]}}}, {"name": "NODE_0000061", "node_attrs": {"div": 37, "num_date": {"value": 2021.5465753424658, "confidence": [2021.5036393870912, 2021.5465753424658]}}, "branch_attrs": {"mutations": {"nuc": ["G8131T", "A28386G"]}}, "children": [{"name": "NZL/21CH0064/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5465753424658, "confidence": [2021.5465753424658, 2021.5465753424658]}, "tsne_y": {"value": 6.512799532354848}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.23"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 7.444499494566287}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 45.26988698196869}, "tsne_x": {"value": 24.31807509687314}, "mds3": {"value": -31.44615747507843}, "umap_x": {"value": 11.590698}, "pca2": {"value": 0.2652533396077518}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.5706204268520416}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.21623}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CH0061/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5465753424658, "confidence": [2021.5465753424658, 2021.5465753424658]}, "tsne_y": {"value": 6.48932318202552}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.23"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 10.078489878793942}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.95237410842403}, "tsne_x": {"value": 24.327734464143195}, "mds3": {"value": -32.47014848888797}, "umap_x": {"value": 11.586976}, "pca2": {"value": 0.2285503328945073}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.5519976922428569}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.880006}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0000878", "node_attrs": {"div": 32, "num_date": {"value": 2021.2806002065377, "confidence": [2020.9958834208137, 2021.3537846780264]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000883", "node_attrs": {"div": 32, "num_date": {"value": 2021.2878820658975, "confidence": [2020.9976689918708, 2021.3658735515257]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000063", "node_attrs": {"div": 36, "num_date": {"value": 2021.4369863013699, "confidence": [2021.3901092582794, 2021.4369863013699]}}, "branch_attrs": {"mutations": {"nuc": ["A652G", "C815T", "C2388T", "T27796C"]}}, "children": [{"name": "NZL/21MV0488/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4369863013699, "confidence": [2021.4369863013699, 2021.4369863013699]}, "tsne_y": {"value": 6.507276322069159}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 6.83595070441636}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.947698440871285}, "tsne_x": {"value": 24.58344031833369}, "mds3": {"value": -30.396896825950208}, "umap_x": {"value": 11.5799465}, "pca2": {"value": 0.22043999714611}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.15077305728705}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.435401}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0522/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.464383561644, "confidence": [2021.464383561644, 2021.464383561644]}, "tsne_y": {"value": 6.458701818364432}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 10.645359244247109}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.94844093540716}, "tsne_x": {"value": 24.617638324968706}, "mds3": {"value": -32.338456112548045}, "umap_x": {"value": 11.578813}, "pca2": {"value": 0.2493351632066862}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.3147095102514714}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.894378}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G29705T"]}}}]}, {"name": "NODE_0000885", "node_attrs": {"div": 32, "num_date": {"value": 2021.328982792981, "confidence": [2020.994689762058, 2021.3790412343187]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000886", "node_attrs": {"div": 32, "num_date": {"value": 2021.3384177592934, "confidence": [2020.9964481448194, 2021.4077563103351]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-171534/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_y": {"value": 6.844191735478217}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.98.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Midtjylland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.204105359687915}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.8970420924836167}, "tsne_x": {"value": 25.70258726880916}, "mds3": {"value": -38.63880278272024}, "umap_x": {"value": 11.048765}, "pca2": {"value": -0.5420354757229482}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.335982177856932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.04959}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G526T", "G2518T", "G5437T", "C6310T", "C7768T", "C12778T", "C19524T", "G19723T", "C22314T", "G27706T", "G28086T", "G28378C", "G28541T"], "S": ["P251L"]}, "labels": {"aa": "S: P251L"}}}, {"name": "IND/517MN908947.3/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7328767123288, "confidence": [2021.7328767123288, 2021.7328767123288]}, "tsne_y": {"value": 6.394577416740456}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.90078945346835}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.415449201986052}, "tsne_x": {"value": 25.73383131159}, "mds3": {"value": -34.50285930264146}, "umap_x": {"value": 11.223448}, "pca2": {"value": 8.38189793729748}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.9255030457363796}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.1019745}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G285T", "G5108T", "G7743T", "A7782T", "G12331A", "C14877T", "C15277T", "-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "C24863A", "G25785T", "A26528T", "-28248G", "-28249A", "-28250T", "-28251T", "-28252T", "-28253A", "-28271A"], "S": ["X156E", "-157F", "X158R", "H1101N", "X1274*"]}, "labels": {"aa": "S: X156E, -157F, X158R, H1101N, X1274*"}}}]}, {"name": "NODE_0000035", "node_attrs": {"div": 36, "num_date": {"value": 2021.5434951288985, "confidence": [2021.391720930164, 2021.6521238643002]}}, "branch_attrs": {"mutations": {"nuc": ["T2125C", "A27123G", "C27143T", "C29218T"]}}, "children": [{"name": "THA/CONI-1666/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8150684931506, "confidence": [2021.8150684931506, 2021.8150684931506]}, "tsne_y": {"value": 6.773219992106529}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.79"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Tak"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.050087319134547}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.585267317748926}, "tsne_x": {"value": 22.04911164622771}, "mds3": {"value": -37.408333584083}, "umap_x": {"value": 11.225562}, "pca2": {"value": 14.078237696656876}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.83935703106803}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.539732}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C10138T", "C12115T", "T23317G", "T27722C", "A29700G"]}}}, {"name": "THA/CONI-1745/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_y": {"value": 6.714510438333541}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.79"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Tak"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.844741856256773}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.581049608313107}, "tsne_x": {"value": 22.194900840059766}, "mds3": {"value": -37.26054423881019}, "umap_x": {"value": 11.22908}, "pca2": {"value": 14.060331035124644}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.733967029897413}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.855774}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T2803C", "C13665T", "C23996T", "C24700T"], "S": ["P812S"]}, "labels": {"aa": "S: P812S"}}}]}]}]}, {"name": "NODE_0000083", "node_attrs": {"div": 34, "num_date": {"value": 2021.363913727609, "confidence": [2021.1974163379389, 2021.4600553626772]}}, "branch_attrs": {"mutations": {"nuc": ["G26107C", "A27507C"]}}, "children": [{"name": "NODE_0000084", "node_attrs": {"div": 35, "num_date": {"value": 2021.4088820207003, "confidence": [2021.246226430653, 2021.4651434425032]}}, "branch_attrs": {"mutations": {"nuc": ["C21897T"], "S": ["S112L"]}, "labels": {"aa": "S: S112L"}}, "children": [{"name": "NODE_0000890", "node_attrs": {"div": 35, "num_date": {"value": 2021.46537421363, "confidence": [2021.237547270487, 2021.5394758444806]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/VA-DCLS-10703/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.823287671233, "confidence": [2021.823287671233, 2021.823287671233]}, "tsne_y": {"value": 7.209649821686784}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Virginia"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.3148480407303}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.521591347739347}, "tsne_x": {"value": 23.36476689532028}, "mds3": {"value": -37.100736904268246}, "umap_x": {"value": 11.506981}, "pca2": {"value": -5.686494597405593}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.805796598288964}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.738036}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A6399G", "T10363G", "T12598C", "G20356T"]}}}, {"name": "USA/M1299H7_514079/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7109589041097, "confidence": [2021.7109589041097, 2021.7109589041097]}, "tsne_y": {"value": 7.360711880304785}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Mississippi"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.0319060454477604}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.147726754144386}, "tsne_x": {"value": 22.993697110713136}, "mds3": {"value": -41.884826168356426}, "umap_x": {"value": 10.992853}, "pca2": {"value": -4.288875179481754}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.880964842986778}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.454459}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G470A", "G2054A", "C6968T", "A13488G", "G25250T", "C26611T", "A27989G", "G29736T"], "S": ["V1230L"]}, "labels": {"aa": "S: V1230L"}}}]}, {"name": "NODE_0000893", "node_attrs": {"div": 35, "num_date": {"value": 2021.4229350419232, "confidence": [2021.2496727348166, 2021.472602739726]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NE-CDC-2-4595042/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.472602739726, "confidence": [2021.472602739726, 2021.472602739726]}, "tsne_y": {"value": 7.123583629525796}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Nebraska"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.658659837284347}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.379883007345381}, "tsne_x": {"value": 23.56459358068776}, "mds3": {"value": -33.65412625073839}, "umap_x": {"value": 11.465143}, "pca2": {"value": -9.811243677505573}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.292191320330815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.811513}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2610T", "G27420A"]}}}, {"name": "NODE_0000087", "node_attrs": {"div": 38, "num_date": {"value": 2021.5371331692763, "confidence": [2021.3998090851676, 2021.5847418175636]}}, "branch_attrs": {"mutations": {"nuc": ["C8752T", "C20451T", "A26759G"]}}, "children": [{"name": "USA/IL-CDC-ASC210130720/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6780821917807, "confidence": [2021.6780821917807, 2021.6780821917807]}, "tsne_y": {"value": 7.717466191806285}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Illinois"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -1.7874227961141094}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 33.28649101589236}, "tsne_x": {"value": 22.83070398186137}, "mds3": {"value": -41.74551894665775}, "umap_x": {"value": 10.959954}, "pca2": {"value": -8.539380024013099}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.0100685023338887}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.575657}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C7875T", "C9438T", "C18326T", "C21658T", "A21987G", "G23311T", "C25521T"], "S": ["D142G", "E583D"]}, "labels": {"aa": "S: D142G, E583D"}}}, {"name": "USA/OSPHL02961/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.672602739726, "confidence": [2021.672602739726, 2021.672602739726]}, "tsne_y": {"value": 7.319071575966383}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Oregon"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.789038578587402}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.1057308265243222}, "tsne_x": {"value": 23.14183122497033}, "mds3": {"value": -34.99685027101102}, "umap_x": {"value": 11.403378}, "pca2": {"value": -1.658584067680141}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 6.357413107019299}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.969472}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G3052T", "G28380T"]}}}]}]}]}, {"name": "NODE_0000896", "node_attrs": {"div": 34, "num_date": {"value": 2021.420400284737, "confidence": [2021.2278614934346, 2021.5528196072246]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000089", "node_attrs": {"div": 36, "num_date": {"value": 2021.6348628998835, "confidence": [2021.4477180148672, 2021.7233058839613]}}, "branch_attrs": {"mutations": {"nuc": ["G12801A", "G22801T"]}}, "children": [{"name": "USA/WA-CDC-LC0340114/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_y": {"value": 7.19449546359178}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.469400675599306}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.903670223944021}, "tsne_x": {"value": 23.32037956276739}, "mds3": {"value": -31.264345051210416}, "umap_x": {"value": 11.55297}, "pca2": {"value": 34.79163460934114}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.988896703769244}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.241058}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "C11379T"]}}}, {"name": "NODE_0000898", "node_attrs": {"div": 36, "num_date": {"value": 2021.662598074907, "confidence": [2021.4545393187523, 2021.7407058729239]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Argentina/UW21122520125/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.982191780822, "confidence": [2021.982191780822, 2021.982191780822]}, "tsne_y": {"value": 7.275585916840231}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.440334593359873}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.441498341157313}, "tsne_x": {"value": 22.826558880062205}, "mds3": {"value": -42.202218589080346}, "umap_x": {"value": 11.024109}, "pca2": {"value": 30.978416043109544}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.9785053823764391}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.402692}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A8825G", "C10228T", "C15280A", "C17550T", "G23611A", "G25690T", "A27862G"]}}}, {"name": "USA/KY-CDC-LC0420083/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.9219178082192, "confidence": [2021.9219178082192, 2021.9219178082192]}, "tsne_y": {"value": 7.288367173950272}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kentucky"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.141969975343574}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.013001274041007}, "tsne_x": {"value": 22.809572076710808}, "mds3": {"value": -41.63814347047049}, "umap_x": {"value": 11.091929}, "pca2": {"value": 1.4985376453770765}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.095524878155574}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.166451}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A6613G", "C11454T", "G12191T", "G16377T", "G24926T", "C27389T", "C28677T"], "S": ["V1122L"]}, "labels": {"aa": "S: V1122L"}}}]}]}, {"name": "NODE_0000091", "node_attrs": {"div": 36, "num_date": {"value": 2021.5351935386102, "confidence": [2021.446449471329, 2021.5794520547945]}}, "branch_attrs": {"mutations": {"nuc": ["A3948G", "G11562T"]}}, "children": [{"name": "USA/FL-CDC-LC0151950/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5794520547945, "confidence": [2021.5794520547945, 2021.5794520547945]}, "tsne_y": {"value": 7.181676600945326}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.534839672552405}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.659195753706266}, "tsne_x": {"value": 23.43614362149404}, "mds3": {"value": -33.153216352186455}, "umap_x": {"value": 11.500389}, "pca2": {"value": 11.415860856490909}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.008247976119528}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.94133}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G27996T"]}}}, {"name": "NODE_0000900", "node_attrs": {"div": 36, "num_date": {"value": 2021.543761596108, "confidence": [2021.4553652524191, 2021.6060584289569]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-CDC-ASC210105281/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_y": {"value": 7.234536491953585}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 4.490554387109555}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 23.120781267016262}, "tsne_x": {"value": 23.36153885822676}, "mds3": {"value": -34.2665342113629}, "umap_x": {"value": 11.361822}, "pca2": {"value": -9.241080863706896}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.13316344321653}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.706302}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2564A", "C22082T"], "S": ["P174S"]}, "labels": {"aa": "S: P174S"}}}, {"name": "NODE_0000909", "node_attrs": {"div": 36, "num_date": {"value": 2021.5683078964148, "confidence": [2021.4553168120858, 2021.6237047891252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-UW21110269455/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.83698630137, "confidence": [2021.83698630137, 2021.83698630137]}, "tsne_y": {"value": 7.575109324059792}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.3439075711807855}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 1.3619102420280955}, "tsne_x": {"value": 23.126974662806987}, "mds3": {"value": -37.83008697690646}, "umap_x": {"value": 11.151342}, "pca2": {"value": 30.314025105991256}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.591109951507777}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.4967985}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3796T", "C10408T", "A14348C", "A20776T", "A21987G", "G25186T", "C26622T", "-28271A"], "S": ["D142G", "Q1208H"]}, "labels": {"aa": "S: D142G, Q1208H"}}}, {"name": "USA/WI-CDC-QDX30364605/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.8068493150686, "confidence": [2021.8068493150686, 2021.8068493150686]}, "tsne_y": {"value": 7.397610565492236}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.25.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Wisconsin"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.937306317147128}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.3333228591864503}, "tsne_x": {"value": 22.69719165084173}, "mds3": {"value": -42.5683918135346}, "umap_x": {"value": 11.127589}, "pca2": {"value": 0.3958933119713398}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -16.183615024352022}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.679603}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C9803T", "C10341T", "T12157C", "T15225C", "C15540T", "A16925G", "G18907A", "C27494T", "C27641T", "C28006T"]}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000118", "node_attrs": {"div": 33, "num_date": {"value": 2021.1649241013447, "confidence": [2020.9524415207002, 2021.292226619156]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NODE_0000120", "node_attrs": {"div": 34, "num_date": {"value": 2021.2103226249508, "confidence": [2021.0108670337713, 2021.3496049228636]}}, "branch_attrs": {"mutations": {"nuc": ["G1048T"]}}, "children": [{"name": "NODE_0000912", "node_attrs": {"div": 34, "num_date": {"value": 2021.2586273865259, "confidence": [2021.0061132019994, 2021.3943486134735]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/21921627570/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7465753424658, "confidence": [2021.7465753424658, 2021.7465753424658]}, "tsne_y": {"value": 7.7106662262739505}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.328040015080438}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.351514456490864}, "tsne_x": {"value": 25.58081598156816}, "mds3": {"value": -34.13125481886864}, "umap_x": {"value": 11.240747}, "pca2": {"value": -5.076573539878882}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.223125327129768}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.583032}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C6336T", "A12040G", "G12328A", "C12870A", "A17691G", "G20937T", "T21264C", "C24130T"]}}}, {"name": "FRA/IHUCOVID-039382_Nova1/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.7986301369863, "confidence": [2021.7986301369863, 2021.7986301369863]}, "tsne_y": {"value": 5.246576080008651}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.2429523453023625}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.3830961335011813}, "tsne_x": {"value": 21.92916788104901}, "mds3": {"value": -37.61125762373025}, "umap_x": {"value": 10.978723}, "pca2": {"value": 12.041123893222212}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -17.68110087844756}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.552073}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1758T", "T2746C", "C5392T", "C19245T", "G22104T", "C22993T", "A23013C", "C23683T", "A23902T", "C27638T", "A27745G", "G29081T", "G29557T"], "S": ["G181V", "E484A", "E780D"]}, "labels": {"aa": "S: G181V, E484A, E780D"}}}]}, {"name": "NODE_0000122", "node_attrs": {"div": 36, "num_date": {"value": 2021.2855999050257, "confidence": [2021.1138085652726, 2021.3592637576785]}}, "branch_attrs": {"mutations": {"nuc": ["A2560G", "G26104T"]}}, "children": [{"name": "IND/GBRC780/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.3602739726027, "confidence": [2021.3602739726027, 2021.3602739726027]}, "tsne_y": {"value": 7.223006353591316}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.16752522692036}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.0155819899478855}, "tsne_x": {"value": 24.41505182208525}, "mds3": {"value": -31.694267787330755}, "umap_x": {"value": 11.513575}, "pca2": {"value": -3.075893689562752}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.645947243104032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.070771}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C15279T", "G21987A", "T27408A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}}, {"name": "NODE_0000914", "node_attrs": {"div": 36, "num_date": {"value": 2021.3279030246842, "confidence": [2021.1116118843586, 2021.4705652060939]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_CVASU_22/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.535616438356, "confidence": [2021.535616438356, 2021.535616438356]}, "tsne_y": {"value": 7.64002554357575}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.136777990179597}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.145587560185186}, "tsne_x": {"value": 24.48316747938041}, "mds3": {"value": -33.2874735272603}, "umap_x": {"value": 11.265319}, "pca2": {"value": -3.370266813826939}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.375816390098644}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.472447}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C15720T", "G28090T", "G28655A", "C29109A"]}}}, {"name": "NODE_0000915", "node_attrs": {"div": 36, "num_date": {"value": 2021.3516496423558, "confidence": [2021.112630708182, 2021.4824649400487]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0634/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5684931506848, "confidence": [2021.5684931506848, 2021.5684931506848]}, "tsne_y": {"value": 7.226134295543176}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 6.245841210057483}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.95240988737708}, "tsne_x": {"value": 24.52518121689328}, "mds3": {"value": -32.77619092223637}, "umap_x": {"value": 11.521612}, "pca2": {"value": 0.2236551665911576}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.444669590595137}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.028058}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G1148T", "A25165G", "C25836T"]}}}, {"name": "NODE_0000916", "node_attrs": {"div": 36, "num_date": {"value": 2021.3774288163227, "confidence": [2021.1133209915533, 2021.4941581596509]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/Laila_505/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8698630136987, "confidence": [2021.8698630136987, 2021.8698630136987]}, "tsne_y": {"value": 7.878400204947598}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.576404919667672}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.92833793643144}, "tsne_x": {"value": 24.494107363135825}, "mds3": {"value": -34.26203155192105}, "umap_x": {"value": 11.1083145}, "pca2": {"value": -6.758540738208972}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -14.326127100762289}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.147219}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C4893T", "T5145C", "C5183T", "G6922A", "C7749T", "A26148G", "G29540T"]}}}, {"name": "OV343085", "node_attrs": {"div": 49, "num_date": {"value": 2021.6753424657534, "confidence": [2021.6753424657534, 2021.6753424657534]}, "tsne_y": {"value": 8.426804308553686}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.122"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Hesse"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.122"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.734328584282758}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.1224270377057293}, "tsne_x": {"value": 24.538861945744472}, "mds3": {"value": -46.4997068651458}, "umap_x": {"value": 11.078253}, "pca2": {"value": -5.600668357374787}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.23072568031632}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.68185}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1102T", "C3587T", "C4455T", "C6445T", "G10523C", "T10612A", "C11833T", "G14371T", "C18395T", "C19961T", "G21641T", "T23600A", "T24835C"], "S": ["A27S", "S680T"]}, "labels": {"aa": "S: A27S, S680T"}}}]}]}]}]}]}, {"name": "NODE_0000126", "node_attrs": {"div": 36, "num_date": {"value": 2021.3309091468232, "confidence": [2021.078458562355, 2021.4740302750668]}}, "branch_attrs": {"mutations": {"nuc": ["A3536G", "T13216C", "C15240T"]}}, "children": [{"name": "NODE_0000918", "node_attrs": {"div": 36, "num_date": {"value": 2021.3796905832348, "confidence": [2021.0427264634066, 2021.6302449013979]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV3328/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.6671232876713, "confidence": [2021.6671232876713, 2021.6671232876713]}, "tsne_y": {"value": 9.740779029944058}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.523336752590506}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.498409113933495}, "tsne_x": {"value": 24.507690114436507}, "mds3": {"value": -30.258285063482298}, "umap_x": {"value": 11.58735}, "pca2": {"value": -7.977555197298119}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.279950446100348}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.150028}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G370T", "G11527T"]}}}, {"name": "NODE_0000128", "node_attrs": {"div": 37, "num_date": {"value": 2021.5346415602369, "confidence": [2021.108606276874, 2021.621260227662]}}, "branch_attrs": {"mutations": {"nuc": ["C8994T"]}}, "children": [{"name": "BRA/MG-NVBS8831GENOV700948673440/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7657534246575, "confidence": [2021.7657534246575, 2021.7657534246575]}, "tsne_y": {"value": 9.850594568960574}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.679733915222773}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.205128429734456}, "tsne_x": {"value": 24.67997427138328}, "mds3": {"value": -34.69475429471747}, "umap_x": {"value": 10.928237}, "pca2": {"value": -7.979364170540907}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -15.07820975836742}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.717876}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G3152T", "G4904T", "C7267T", "A17844G", "T25479C", "C26256T", "G27281T", "A29004G"]}}}, {"name": "BRA/PR-NVBS7565GENOV828253393546/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_y": {"value": 9.902742344259782}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.091881997465432}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.547971460711869}, "tsne_x": {"value": 24.59402120520944}, "mds3": {"value": -33.8493565617656}, "umap_x": {"value": 11.013016}, "pca2": {"value": -8.485855951695235}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.73505353529412}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.995038}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C5622T", "C8090T", "C8814T", "G13397T", "G15439A", "G28209T", "G29543T"]}}}]}]}, {"name": "NODE_0000129", "node_attrs": {"div": 39, "num_date": {"value": 2021.4103295083721, "confidence": [2021.2340182747778, 2021.4970123771882]}}, "branch_attrs": {"mutations": {"nuc": ["C4927T", "A5638G", "C12525T"]}}, "children": [{"name": "NODE_0000149", "node_attrs": {"div": 40, "num_date": {"value": 2021.4412192071698, "confidence": [2021.284655815343, 2021.5104898652546]}}, "branch_attrs": {"mutations": {"nuc": ["T27645C"]}}, "children": [{"name": "BRA/MG-NVBS9469GENOV700956113020/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.8424657534247, "confidence": [2021.8424657534247, 2021.8424657534247]}, "tsne_y": {"value": 11.34126431655306}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.457939787621902}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.514219834706277}, "tsne_x": {"value": 24.160490681296363}, "mds3": {"value": -45.32025712097787}, "umap_x": {"value": 11.072112}, "pca2": {"value": -8.514079577045747}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.26306042569514}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.738685}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "T1354C", "C1441T", "C6848T", "T8071C", "A8072T", "T9964C", "G22346T"], "S": ["A262S"]}, "labels": {"aa": "S: A262S"}}}, {"name": "NODE_0000150", "node_attrs": {"div": 41, "num_date": {"value": 2021.4753257680734, "confidence": [2021.3505774889627, 2021.5164383561644]}}, "branch_attrs": {"mutations": {"nuc": ["C5512T"]}}, "children": [{"name": "BRA/RJ-NVBS3500GENOV827820557718/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5164383561644, "confidence": [2021.5164383561644, 2021.5164383561644]}, "tsne_y": {"value": 11.00478220219097}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.154193124948986}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.38985558544218}, "tsne_x": {"value": 24.39882167445824}, "mds3": {"value": -32.970524613754925}, "umap_x": {"value": 10.990342}, "pca2": {"value": -8.01176883397479}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.271691187467988}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.409366}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "C13792T"]}}}, {"name": "BRA/EPI_ISL_4273416/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.672602739726, "confidence": [2021.672602739726, 2021.672602739726]}, "tsne_y": {"value": 11.10968588450766}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "S\u00e3o Paulo"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.10603732030549}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.384975807200204}, "tsne_x": {"value": 24.3710001224212}, "mds3": {"value": -33.88955675237167}, "umap_x": {"value": 10.81049}, "pca2": {"value": 2.684081600477769}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.955736147786838}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.685937}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1420T", "C3695T", "T11220C", "C16393T", "G29348T"]}}}]}]}, {"name": "NODE_0000924", "node_attrs": {"div": 39, "num_date": {"value": 2021.458839039478, "confidence": [2021.2293851573002, 2021.5273142273647]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/21896017ATG/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6780821917807, "confidence": [2021.6780821917807, 2021.6780821917807]}, "tsne_y": {"value": 10.928321862026188}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.440229995791835}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.331026844082603}, "tsne_x": {"value": 24.40228420500019}, "mds3": {"value": -33.34556348009139}, "umap_x": {"value": 10.897516}, "pca2": {"value": 0.3954962892987319}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.012470754946414}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.266818}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1973T", "C13335T", "G25690T"]}}}, {"name": "NODE_0000925", "node_attrs": {"div": 39, "num_date": {"value": 2021.4730920301938, "confidence": [2021.239068121498, 2021.539194964724]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS5590GENOV700931980586/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6123287671232, "confidence": [2021.6123287671232, 2021.6123287671232]}, "tsne_y": {"value": 10.947542147745464}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.349696162336787}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.198961635696769}, "tsne_x": {"value": 24.345123469702223}, "mds3": {"value": -34.69618546207842}, "umap_x": {"value": 10.812727}, "pca2": {"value": -7.592974630571449}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.854720874716447}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.765819}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G4720T", "C19488T", "T19986C", "A20630G", "G22132T", "G26690T"], "S": ["R190S"]}, "labels": {"aa": "S: R190S"}}}, {"name": "NODE_0000135", "node_attrs": {"div": 40, "num_date": {"value": 2021.5424185998836, "confidence": [2021.3997931119536, 2021.6180765680724]}}, "branch_attrs": {"mutations": {"nuc": ["C14757T"]}}, "children": [{"name": "BRA/RJ-NVBS8576GENOV828227556069/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7657534246575, "confidence": [2021.7657534246575, 2021.7657534246575]}, "tsne_y": {"value": 10.965681204009842}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.65572331116175}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 10.318330251884545}, "tsne_x": {"value": 24.4138984209337}, "mds3": {"value": -28.13335336908044}, "umap_x": {"value": 11.350399}, "pca2": {"value": -2.910687262715843}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.2109986710689934}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.935638}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A23977G", "G27420A", "C27638T"], "S": ["I805M"]}, "labels": {"aa": "S: I805M"}}}, {"name": "BRA/SP-NVBS6908GENOV701259661133/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_y": {"value": 10.967042605844007}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.77287452614497}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.933354789233719}, "tsne_x": {"value": 24.366369672979395}, "mds3": {"value": -35.35890963194103}, "umap_x": {"value": 10.832661}, "pca2": {"value": -6.753898173849217}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.87068191631729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.669565}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C4321T", "T11269C", "C17747T", "G25522A", "C25728T"]}}}]}]}]}, {"name": "NODE_0000934", "node_attrs": {"div": 39, "num_date": {"value": 2021.4223112250318, "confidence": [2021.2381429048487, 2021.5256900368643]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS3124GENOV827852621425/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.535616438356, "confidence": [2021.535616438356, 2021.535616438356]}, "tsne_y": {"value": 10.93013791183518}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.411512806664195}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.263753181319252}, "tsne_x": {"value": 24.40421347186652}, "mds3": {"value": -33.21961217603281}, "umap_x": {"value": 10.912382}, "pca2": {"value": -7.74422836740469}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.254518468999619}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.309155}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A2581C", "A8840G", "C23481T"], "S": ["S640F"]}, "labels": {"aa": "S: S640F"}}}, {"name": "NODE_0000136", "node_attrs": {"div": 40, "num_date": {"value": 2021.4924479625292, "confidence": [2021.250339025982, 2021.568015527066]}}, "branch_attrs": {"mutations": {"nuc": ["C1267T"]}}, "children": [{"name": "BRA/RJ-NVBS5598GENOV700932238587/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6123287671232, "confidence": [2021.6123287671232, 2021.6123287671232]}, "tsne_y": {"value": 10.93507219609571}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.211226159458924}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.628773734936624}, "tsne_x": {"value": 24.38627178707355}, "mds3": {"value": -33.563335992192904}, "umap_x": {"value": 10.860173}, "pca2": {"value": -6.06171671472694}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.527716484881046}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.296277}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G16696T", "G27583T"]}}}, {"name": "NODE_0000936", "node_attrs": {"div": 40, "num_date": {"value": 2021.515323262994, "confidence": [2021.2505263351989, 2021.5698870037102]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000939", "node_attrs": {"div": 40, "num_date": {"value": 2021.5430805929634, "confidence": [2021.250624492923, 2021.5850189824862]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/EPI_ISL_8890050/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.63698630137, "confidence": [2021.63698630137, 2021.63698630137]}, "tsne_y": {"value": 10.954302693708817}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "S\u00e3o Paulo"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.79948230924834}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 4.764633948676227}, "tsne_x": {"value": 24.37528313134395}, "mds3": {"value": -34.796915099227874}, "umap_x": {"value": 10.733093}, "pca2": {"value": -4.777753117103016}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.3415540011949}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.898193}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "C22326T", "A24003G"], "S": ["S255F", "K814R"]}, "labels": {"aa": "S: S255F, K814R"}}}, {"name": "BRA/PR-NVBS5833GENOV828081131969/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_y": {"value": 10.969506720287743}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.62685546960453}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.263887516570852}, "tsne_x": {"value": 24.360563808397192}, "mds3": {"value": -35.26984837455335}, "umap_x": {"value": 10.7679}, "pca2": {"value": -5.15900344858122}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.409958676675314}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.752573}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G17302T", "A18470G", "G19075A", "C26366T"]}}}]}, {"name": "NODE_0000940", "node_attrs": {"div": 40, "num_date": {"value": 2021.5432538315279, "confidence": [2021.2492801197668, 2021.5854155981724]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS8880GENOV828225897034/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.7630136986302, "confidence": [2021.7630136986302, 2021.7630136986302]}, "tsne_y": {"value": 11.15087333299792}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 28.94211604202547}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 3.174991122370124}, "tsne_x": {"value": 23.738006245625098}, "mds3": {"value": -35.26189748643996}, "umap_x": {"value": 11.077714}, "pca2": {"value": -3.5674905628897955}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.145933440810408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.688816}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G6536T", "G10007T", "A10028G", "G11299T", "A17056G", "C20233T", "C22082T", "A25531G", "C27641T", "C28333T", "G28925T"], "S": ["P174S"]}, "labels": {"aa": "S: P174S"}}}, {"name": "BRA/DF-NVBS9227GENOV828213991676/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7575342465752, "confidence": [2021.7575342465752, 2021.7575342465752]}, "tsne_y": {"value": 10.96901336902511}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.94603355634095}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.599497673667691}, "tsne_x": {"value": 24.32358519223597}, "mds3": {"value": -34.80581503868728}, "umap_x": {"value": 10.799402}, "pca2": {"value": -5.845486597206516}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.940667598210382}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.812397}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A5436C", "T10150C", "C20698T", "G22205T", "C27737T"], "S": ["D215Y"]}, "labels": {"aa": "S: D215Y"}}}]}]}]}]}, {"name": "NODE_0000910", "node_attrs": {"div": 39, "num_date": {"value": 2021.422679497966, "confidence": [2021.2392084918738, 2021.4985824748046]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000911", "node_attrs": {"div": 39, "num_date": {"value": 2021.4391268646114, "confidence": [2021.2407607411114, 2021.5036984653061]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS3491GENOV827810338839/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_y": {"value": 10.930866942738367}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.0858724581803}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.239440977301803}, "tsne_x": {"value": 24.406559032290943}, "mds3": {"value": -33.13711992793376}, "umap_x": {"value": 10.907451}, "pca2": {"value": -7.563597354900445}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.820695421825993}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.348093}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2695T", "T3391G", "G29715T"]}}}, {"name": "NODE_0000147", "node_attrs": {"div": 40, "num_date": {"value": 2021.513698630137, "confidence": [2021.4752120813946, 2021.513698630137]}}, "branch_attrs": {"mutations": {"nuc": ["T28759C"]}}, "children": [{"name": "BRA/PR-NVBS7238GENOV828124050615/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_y": {"value": 10.929519523978133}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.88119543154508}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.552336875512756}, "tsne_x": {"value": 24.404087336591445}, "mds3": {"value": -33.91416606303523}, "umap_x": {"value": 10.816325}, "pca2": {"value": -8.500050489896566}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.584007201113929}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.158868}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C16915T", "G25855T"]}}}, {"name": "BRA/RJ-NVBS3477GENOV827811064249/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_y": {"value": 10.863470387540335}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.75100181169547}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.341404614529396}, "tsne_x": {"value": 24.417769970187187}, "mds3": {"value": -32.49701755320724}, "umap_x": {"value": 11.221722}, "pca2": {"value": -5.05265357835633}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.660579571682823}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.101307}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000913", "node_attrs": {"div": 39, "num_date": {"value": 2021.4629710468296, "confidence": [2021.209544666875, 2021.6120806190688]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000927", "node_attrs": {"div": 39, "num_date": {"value": 2021.504392716147, "confidence": [2021.1923838175808, 2021.599601847459]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000928", "node_attrs": {"div": 39, "num_date": {"value": 2021.5429205277815, "confidence": [2021.190298124181, 2021.60190171326]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS6307GENOV828108816596/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.694520547945, "confidence": [2021.694520547945, 2021.694520547945]}, "tsne_y": {"value": 10.960849585990273}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.63256575563844}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.190036114663848}, "tsne_x": {"value": 24.36928271092823}, "mds3": {"value": -33.15945843902542}, "umap_x": {"value": 10.808374}, "pca2": {"value": -7.441787389289129}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.360956867487912}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.847108}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T14628C", "C21627T", "A24410G", "G26020A", "C28789T", "C29296T"], "S": ["T22I", "N950D"]}, "labels": {"aa": "S: T22I, N950D"}}}, {"name": "BRA/ILMD2100743/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7082191780821, "confidence": [2021.7082191780821, 2021.7082191780821]}, "tsne_y": {"value": 10.9298620194548}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.00431267170138}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.7659015170548449}, "tsne_x": {"value": 24.396006688734527}, "mds3": {"value": -34.62192939892587}, "umap_x": {"value": 10.958933}, "pca2": {"value": 0.4414379032679865}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -11.556732703809464}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.277137}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A14791T", "C16376T", "G21956C", "G26155-", "T26156-", "T26157-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "C29272T"], "S": ["E132Q"]}, "labels": {"aa": "S: E132Q"}}}]}, {"name": "NODE_0000929", "node_attrs": {"div": 39, "num_date": {"value": 2021.5420918520717, "confidence": [2021.191280498055, 2021.6525427868028]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000931", "node_attrs": {"div": 39, "num_date": {"value": 2021.566920899446, "confidence": [2021.1918796524144, 2021.659929302885]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/GO-NVBS5749GENOV700800130029/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.694520547945, "confidence": [2021.694520547945, 2021.694520547945]}, "tsne_y": {"value": 10.948283954777567}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.52544940209682}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.037670559721912}, "tsne_x": {"value": 24.396561033490983}, "mds3": {"value": -34.06282082028249}, "umap_x": {"value": 10.769978}, "pca2": {"value": -7.120490891662104}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.015558785358588}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.053722}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A10471G", "A20935G", "C27002T", "C27476T"]}}}, {"name": "BRA/SP-NVBS8088GENOV828227084111/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7657534246575, "confidence": [2021.7657534246575, 2021.7657534246575]}, "tsne_y": {"value": 10.940362014912395}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.39161491552587}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 7.551233575510473}, "tsne_x": {"value": 24.3889744843452}, "mds3": {"value": -33.07869856841374}, "umap_x": {"value": 10.962179}, "pca2": {"value": -7.776668746367045}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.658588533997133}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.260487}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C16394T", "C19983T", "G24928T", "C29249T"]}}}]}, {"name": "NODE_0000933", "node_attrs": {"div": 39, "num_date": {"value": 2021.5656742494446, "confidence": [2021.196783341176, 2021.6818459628475]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PI-NVBS9848GENOV701341476805/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_y": {"value": 10.96606110936722}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.854204221051454}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.580313292105717}, "tsne_x": {"value": 24.38828596690149}, "mds3": {"value": -33.47547432380512}, "umap_x": {"value": 10.829753}, "pca2": {"value": -5.470941063398676}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.88179906935767}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.001877}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2369A", "C13862T", "A19830G", "C25585T", "T28219-", "A28220-", "G28221-", "A28222-", "G28223-", "T28224-", "A28225-"]}}}, {"name": "BRA/RJ-NVBS9462GENOV828389971830/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8616438356164, "confidence": [2021.8616438356164, 2021.8616438356164]}, "tsne_y": {"value": 11.025563015484869}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.055885668105063}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.553629634777366}, "tsne_x": {"value": 24.05384773204243}, "mds3": {"value": -37.196205526288175}, "umap_x": {"value": 11.038331}, "pca2": {"value": -8.50034346311719}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -10.328679014329564}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.784149}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1170T", "C5806T", "T7489C", "C14821T", "C16049T", "T23803C", "C25844T", "T29476C"]}}}]}]}]}, {"name": "NODE_0000151", "node_attrs": {"div": 40, "num_date": {"value": 2021.511905275955, "confidence": [2021.2507519115745, 2021.6575929463115]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000157", "node_attrs": {"div": 41, "num_date": {"value": 2021.5693779947808, "confidence": [2021.3228230836314, 2021.7044589272432]}}, "branch_attrs": {"mutations": {"nuc": ["C27982A"]}}, "children": [{"name": "BRA/ILMD2200163/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.941095890411, "confidence": [2021.941095890411, 2021.941095890411]}, "tsne_y": {"value": 11.245026912226315}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.996773072909644}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.648031982154361}, "tsne_x": {"value": 24.770122266671528}, "mds3": {"value": -38.541433945278136}, "umap_x": {"value": 11.085148}, "pca2": {"value": 1.4760001365073834}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -8.628487966865324}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.834086}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1385T", "A3752G", "A9134G", "A12130G", "C13721T", "T22882C", "C29774T"]}}}, {"name": "BRA/ILMD2101435/2021", "node_attrs": {"div": 53, "num_date": {"value": 2021.9301369863015, "confidence": [2021.9301369863015, 2021.9301369863015]}, "tsne_y": {"value": 11.27859198215002}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.909367870098365}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.211910183794844}, "tsne_x": {"value": 25.12836282041044}, "mds3": {"value": -42.951455827873815}, "umap_x": {"value": 11.097551}, "pca2": {"value": -3.5726907088031874}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.693834479993315}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.600191}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A6613G", "C8802T", "C9808T", "G11521A", "C11758T", "C11767T", "A12557G", "C23320T", "G25540T", "C27689T", "C27920T", "G28968A"]}}}]}, {"name": "NODE_0000943", "node_attrs": {"div": 40, "num_date": {"value": 2021.5415958810108, "confidence": [2021.2503584530068, 2021.6563580030625]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000944", "node_attrs": {"div": 40, "num_date": {"value": 2021.5641406896948, "confidence": [2021.2505257007742, 2021.6655224845479]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS8682GENOV828207751743/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.7520547945205, "confidence": [2021.7520547945205, 2021.7520547945205]}, "tsne_y": {"value": 11.055399660150355}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.82253273957228}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.1261700971399735}, "tsne_x": {"value": 24.52126204905071}, "mds3": {"value": -38.07706061174717}, "umap_x": {"value": 10.963603}, "pca2": {"value": -7.278368311259854}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.73203813751348}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.12399}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2902T", "G3566A", "T7919C", "C10733T", "G21785C", "A27399G"], "S": ["G75R"]}, "labels": {"aa": "S: G75R"}}}, {"name": "BRA/SP-NVBS10255GENOV828343268297/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.8342465753424, "confidence": [2021.8342465753424, 2021.8342465753424]}, "tsne_y": {"value": 11.047437868880658}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.42238694743656}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.4742195236474065}, "tsne_x": {"value": 24.43004756551585}, "mds3": {"value": -33.358857754125296}, "umap_x": {"value": 10.812211}, "pca2": {"value": -3.0363508674512887}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.617991760538106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.013462}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G4856A", "C5055T", "T7124C", "C9611T", "G23012C", "C25669T"], "S": ["E484Q"]}, "labels": {"aa": "S: E484Q"}}}]}, {"name": "NODE_0000152", "node_attrs": {"div": 41, "num_date": {"value": 2021.5753033611093, "confidence": [2021.4989728906257, 2021.6816434551388]}}, "branch_attrs": {"mutations": {"nuc": ["T27645C"]}}, "children": [{"name": "BRA/DF-NVBS6094GENOV828126627976/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_y": {"value": 11.104020987864812}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.93917581614892}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.21037360994807}, "tsne_x": {"value": 24.439309188252164}, "mds3": {"value": -33.77586517197769}, "umap_x": {"value": 10.821503}, "pca2": {"value": -3.700665785669581}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.7579906230634568}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.985885}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A2396G", "C25708A", "C28333T", "T29742G"]}}}, {"name": "NODE_0000946", "node_attrs": {"div": 41, "num_date": {"value": 2021.6043952297773, "confidence": [2021.498091115557, 2021.6853032438114]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/2068554/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.768493150685, "confidence": [2021.768493150685, 2021.768493150685]}, "tsne_y": {"value": 11.238228144343868}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Rio de Janeiro"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.05764688404041}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.135237627738134}, "tsne_x": {"value": 24.51295362758756}, "mds3": {"value": -33.98599128680539}, "umap_x": {"value": 10.830535}, "pca2": {"value": 34.42222658976709}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.915091334339264}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.806566}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1288T", "C2721T", "C25549T", "G25654T", "C25721T", "G25954A"]}}}, {"name": "NODE_0000950", "node_attrs": {"div": 41, "num_date": {"value": 2021.6365779513023, "confidence": [2021.497422332856, 2021.7012620046537]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SC-NVBS10121GENOV045616969778/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.858904109589, "confidence": [2021.858904109589, 2021.858904109589]}, "tsne_y": {"value": 11.558593130526424}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.464104425222807}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.884300582184221}, "tsne_x": {"value": 24.579932151317053}, "mds3": {"value": -41.35402071911403}, "umap_x": {"value": 11.127818}, "pca2": {"value": -6.647537642224203}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.580204667850868}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.570905}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G3994A", "T4041C", "C10125T", "G11287A", "G16912A", "A16938T", "G18756T", "C23277T", "C29485T"], "S": ["T572I"]}, "labels": {"aa": "S: T572I"}}}, {"name": "BRA/ILMD2101249/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.872602739726, "confidence": [2021.872602739726, 2021.872602739726]}, "tsne_y": {"value": 11.00806753024326}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.99.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "13"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.99.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.771270520617747}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.351665363154257}, "tsne_x": {"value": 24.441549391707845}, "mds3": {"value": -31.968749585280108}, "umap_x": {"value": 11.142343}, "pca2": {"value": 1.7654525533830416}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.184731611039047}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.975057}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C12081T", "C26735T"]}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000158", "node_attrs": {"div": 34, "num_date": {"value": 2021.185771224098, "confidence": [2020.9943791022104, 2021.3039726135462]}}, "branch_attrs": {"mutations": {"nuc": ["C21846T"], "S": ["T95I"]}, "labels": {"aa": "S: T95I"}}, "children": [{"name": "NODE_0000165", "node_attrs": {"div": 35, "num_date": {"value": 2021.2855250321636, "confidence": [2021.0823046462074, 2021.4866161163816]}}, "branch_attrs": {"mutations": {"nuc": ["A24410G"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}, "children": [{"name": "NODE_0000953", "node_attrs": {"div": 35, "num_date": {"value": 2021.3709773756975, "confidence": [2021.0972712327655, 2021.6808219178083]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/Laila_694/2022", "node_attrs": {"div": 46, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 7.0441538323961685}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.131"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.33502442312054}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 2.278718038250332}, "tsne_x": {"value": 26.456906878869543}, "mds3": {"value": -34.36726203532421}, "umap_x": {"value": 11.095895}, "pca2": {"value": -1.7051537950424065}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.828129911702834}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.435275}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C12923T", "C14407T", "T14775C", "G19999T", "G22899T", "G23012C", "C23059T", "A23064C", "C28054G", "T29014C", "G29688T"], "S": ["G446V", "E484Q", "N501T"]}, "labels": {"aa": "S: G446V, E484Q, N501T"}}}, {"name": "BHR/342551316/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_y": {"value": 6.577127544915733}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.16095168106647}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.142952595910095}, "tsne_x": {"value": 24.92363396032504}, "mds3": {"value": -28.86261253676173}, "umap_x": {"value": 11.612041}, "pca2": {"value": -8.750438372772743}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.945008272062553}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.480125}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C106T", "C12741T", "G16245T"]}}}]}, {"name": "NODE_0000167", "node_attrs": {"div": 37, "num_date": {"value": 2021.3692311436394, "confidence": [2021.1754417131915, 2021.5322437110194]}}, "branch_attrs": {"mutations": {"nuc": ["C6408T", "A25003G"]}}, "children": [{"name": "IMS-10004-CVDP-6CE0E275-6B3C-4850-8867-46999A67EC03", "node_attrs": {"div": 44, "num_date": {"value": 2021.5493150684931, "confidence": [2021.5493150684931, 2021.5493150684931]}, "tsne_y": {"value": 6.445099406140169}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.120.2.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.64163967799552}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.273033383745604}, "tsne_x": {"value": 25.86131963189384}, "mds3": {"value": -33.53968249111471}, "umap_x": {"value": 11.303776}, "pca2": {"value": -6.953299397750951}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.412392402735465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.183699}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G174T", "C1102T", "G1890T", "C7105T", "C13138T", "C21758T", "T27017A"], "S": ["H66Y"]}, "labels": {"aa": "S: H66Y"}}}, {"name": "NODE_0000168", "node_attrs": {"div": 45, "num_date": {"value": 2021.782191780822, "confidence": [2021.7304386608994, 2021.782191780822]}}, "branch_attrs": {"mutations": {"nuc": ["C344T", "G347A", "G12797T", "G20383A", "G21987A", "G24410A", "C26177T", "G26951T"], "S": ["G142D", "D950N"]}, "labels": {"aa": "S: G142D, D950N"}}, "children": [{"name": "DJI/NAMRU3_E932/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_y": {"value": 4.681647817087138}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.120"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Djibouti"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.5962841959554168}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.6268213685787023}, "tsne_x": {"value": 23.00152692460525}, "mds3": {"value": -38.358748490997215}, "umap_x": {"value": 11.280713}, "pca2": {"value": 1.4638656596038295}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.5588480794096122}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.636753}, "country": {"value": "Djibouti"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "DJI/NAMRU3_E933/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_y": {"value": 4.666935529246466}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.120"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Djibouti"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.553488363323628}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.626821368578847}, "tsne_x": {"value": 23.00265490094749}, "mds3": {"value": -38.72006257198149}, "umap_x": {"value": 11.344374}, "pca2": {"value": 1.4638656596036934}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.9038736169754515}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.576183}, "country": {"value": "Djibouti"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0000957", "node_attrs": {"div": 34, "num_date": {"value": 2021.204786830149, "confidence": [2020.996594834678, 2021.369555896704]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000958", "node_attrs": {"div": 34, "num_date": {"value": 2021.2512644907717, "confidence": [2020.9938742801532, 2021.3828955043234]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000960", "node_attrs": {"div": 34, "num_date": {"value": 2021.285901444507, "confidence": [2020.994529549803, 2021.390896137821]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0485/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4041095890411, "confidence": [2021.4041095890411, 2021.4041095890411]}, "tsne_y": {"value": 6.286490856952714}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.107"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.832701901764453}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.602887470245391}, "tsne_x": {"value": 24.76094266812176}, "mds3": {"value": -31.091251691968264}, "umap_x": {"value": 11.654622}, "pca2": {"value": 0.6108990680711371}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.3849160992922356}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.217309}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A15012G", "C24863T", "C29358T"], "S": ["H1101Y"]}, "labels": {"aa": "S: H1101Y"}}}, {"name": "BHR/21342753423_S65_L001/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.886301369863, "confidence": [2021.886301369863, 2021.886301369863]}, "tsne_y": {"value": 6.345646377267639}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.112"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.805040405314973}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.1674791500357085}, "tsne_x": {"value": 26.181656356221666}, "mds3": {"value": -35.622397540893886}, "umap_x": {"value": 10.987994}, "pca2": {"value": -6.611672486378103}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.059506719115616}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.552533}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A518-", "T519-", "G520-", "G625T", "G2407A", "G3401A", "C6198T", "C6312T", "C23179A", "T23842C", "A24369G", "G25647T", "G28632C", "G29422T"], "S": ["D936G"]}, "labels": {"aa": "S: D936G"}}}]}, {"name": "NODE_0000161", "node_attrs": {"div": 35, "num_date": {"value": 2021.3284742222206, "confidence": [2021.0848608303593, 2021.4866656576864]}}, "branch_attrs": {"mutations": {"nuc": ["G1738T"]}}, "children": [{"name": "NGA/CV2705/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5904109589042, "confidence": [2021.5904109589042, 2021.5904109589042]}, "tsne_y": {"value": 5.629384015045758}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.109"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.180654430777237}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 1.808626517584284}, "tsne_x": {"value": 24.220588533477045}, "mds3": {"value": -34.41606891081167}, "umap_x": {"value": 11.336521}, "pca2": {"value": -12.310803064656348}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.1857375548264661}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.867614}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3170A", "A11595G", "T12184C", "G13654A", "A14836G", "C16989T", "C27549T"]}}}, {"name": "NODE_0000162", "node_attrs": {"div": 37, "num_date": {"value": 2021.5349021938375, "confidence": [2021.1815288990283, 2021.629463234022]}}, "branch_attrs": {"mutations": {"nuc": ["A10691G", "A27298G"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-AF24/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8835616438357, "confidence": [2021.8835616438357, 2021.8835616438357]}, "tsne_y": {"value": 6.821578850552355}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 14.098775391217874}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 35.99859392557272}, "tsne_x": {"value": 25.674209448801445}, "mds3": {"value": -30.02859094448608}, "umap_x": {"value": 11.317061}, "pca2": {"value": -0.8487917223812805}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.489702011940016}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.758008}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2782T", "C7735T", "A21801C", "T21846C", "A22206G", "G22289-", "C22290-", "T22291-", "C25782T"], "S": ["D80A", "I95T", "D215G", "A243-"]}, "labels": {"aa": "S: D80A, I95T, D215G, A243-"}}}, {"name": "BRA/SP-NVBS8148GENOV828204198558/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7493150684932, "confidence": [2021.7493150684932, 2021.7493150684932]}, "tsne_y": {"value": 6.747663563913857}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.116"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 8.43380491770817}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 34.3303126245398}, "tsne_x": {"value": 25.688602309229605}, "mds3": {"value": -36.78081279685348}, "umap_x": {"value": 11.299897}, "pca2": {"value": -8.721679686645407}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -9.954811629602776}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.420608}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1387T", "T4996C", "C6401T", "C11322T", "A20886G", "G28913A"]}}}]}]}]}, {"name": "NODE_0000965", "node_attrs": {"div": 34, "num_date": {"value": 2021.2225605144033, "confidence": [2020.9966419587947, 2021.372868782674]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000170", "node_attrs": {"div": 35, "num_date": {"value": 2021.2859907351733, "confidence": [2021.0968580865392, 2021.3984054275222]}}, "branch_attrs": {"mutations": {"nuc": ["A21194G"]}}, "children": [{"name": "Switzerland/ZH-ETHZ-673169/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.9054794520548, "confidence": [2021.9054794520548, 2021.9054794520548]}, "tsne_y": {"value": 6.449626341472621}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.129"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Z\u00fcrich"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.194350724381955}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 14.26589396327084}, "tsne_x": {"value": 25.06269796966752}, "mds3": {"value": -32.29843078500255}, "umap_x": {"value": 11.52339}, "pca2": {"value": -13.837882829986532}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.5655785921889267}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.033778}, "country": {"value": "Switzerland"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2536T", "A10323G", "G28001T", "T28156C"]}}}, {"name": "NZL/21MV0496/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.4424657534246, "confidence": [2021.4424657534246, 2021.4424657534246]}, "tsne_y": {"value": 5.336793981767671}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.46"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 11.17307119865613}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 58.57156638090724}, "tsne_x": {"value": 24.67663876266789}, "mds3": {"value": -30.78975020710658}, "umap_x": {"value": 11.58476}, "pca2": {"value": 1.7963387964017157}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.0502816714678374}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.177193}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A3765G", "G4657A", "C10977T", "A11052G", "C29353T", "G29825T"]}}}]}, {"name": "NODE_0000171", "node_attrs": {"div": 37, "num_date": {"value": 2021.329460112717, "confidence": [2021.0863842054123, 2021.4462497069867]}}, "branch_attrs": {"mutations": {"nuc": ["C9559T", "C15240T", "T28007C"]}}, "children": [{"name": "NODE_0000172", "node_attrs": {"div": 40, "num_date": {"value": 2021.4592702093798, "confidence": [2021.2171559844028, 2021.5601000759293]}}, "branch_attrs": {"mutations": {"nuc": ["C925T", "C9474T", "C25460T"]}}, "children": [{"name": "NODE_0000969", "node_attrs": {"div": 40, "num_date": {"value": 2021.471848858304, "confidence": [2021.2230403660676, 2021.5734415470827]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PR-NVBS5876GENOV828069142666/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.6698630136987, "confidence": [2021.6698630136987, 2021.6698630136987]}, "tsne_y": {"value": 4.580254739654786}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.76986168519994}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.134071815360111}, "tsne_x": {"value": 27.74200470109736}, "mds3": {"value": -44.25120111575908}, "umap_x": {"value": 11.100855}, "pca2": {"value": -7.425007970275634}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 11.691617029256646}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.556345}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A819G", "C1263T", "C1300T", "C5314T", "G12767T", "C23191T", "C26058T", "G27670T", "C29028T"]}}}, {"name": "BRA/PR-NVBS11244GENOV045393923000/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.9301369863015, "confidence": [2021.9301369863015, 2021.9301369863015]}, "tsne_y": {"value": 4.606794177868382}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.441987972916905}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.371672761321723}, "tsne_x": {"value": 27.727085665537025}, "mds3": {"value": -39.53729434602352}, "umap_x": {"value": 11.07902}, "pca2": {"value": -5.173801798975686}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 9.126368869196453}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.824542}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A8456G", "G8578A", "A15604T", "T17067C", "C21057T", "C23707T", "C25578T", "T27912C"]}}}]}, {"name": "NODE_0000174", "node_attrs": {"div": 41, "num_date": {"value": 2021.5023866834574, "confidence": [2021.286173249025, 2021.5936643892896]}}, "branch_attrs": {"mutations": {"nuc": ["T592C"]}}, "children": [{"name": "BRA/SP-NVBS7924GENOV828264740438/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_y": {"value": 4.634178824925319}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.11292865852183}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.936978894615981}, "tsne_x": {"value": 27.57356546713708}, "mds3": {"value": -39.519544160031465}, "umap_x": {"value": 11.104241}, "pca2": {"value": -6.751137232426337}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 8.905975571154329}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.476383}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A4916G", "C6040T", "C16092T", "G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}}, {"name": "BRA/PE-NVBS4325GENOV827985913008/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.6205479452055, "confidence": [2021.6205479452055, 2021.6205479452055]}, "tsne_y": {"value": 4.612910122918285}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.101"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.431979643687953}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.920005052320414}, "tsne_x": {"value": 27.67273870720725}, "mds3": {"value": -39.835654213125785}, "umap_x": {"value": 11.102006}, "pca2": {"value": -6.7429352503508975}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 9.361745542446794}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.988219}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2232T", "A17631G", "C17766T", "C24223T", "C28961T"]}}}]}]}, {"name": "NODE_0000971", "node_attrs": {"div": 37, "num_date": {"value": 2021.3356089713154, "confidence": [2021.0903623369584, 2021.4524636967449]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/Laila_112/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_y": {"value": 5.571894417543829}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.05114633048972}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 5.540382893731622}, "tsne_x": {"value": 27.003080504594443}, "mds3": {"value": -42.00058465819188}, "umap_x": {"value": 11.079613}, "pca2": {"value": -4.912549551113432}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.904436438319962}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.284516}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G174C", "C10408T", "C10448T", "G18651T", "T20004C", "A20553G", "T22020C", "G25951A", "C29025T"], "S": ["M153T"]}, "labels": {"aa": "S: M153T"}}}, {"name": "NODE_0000176", "node_attrs": {"div": 38, "num_date": {"value": 2021.4187172606296, "confidence": [2021.1067554812244, 2021.5507041936787]}}, "branch_attrs": {"mutations": {"nuc": ["G17122T"]}}, "children": [{"name": "NODE_0000177", "node_attrs": {"div": 39, "num_date": {"value": 2021.5153579177052, "confidence": [2021.2024993684781, 2021.5666707065063]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "USA/PA-CDC-LC0173814/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5712328767124, "confidence": [2021.5712328767124, 2021.5712328767124]}, "tsne_y": {"value": 5.127217925824608}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Pennsylvania"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.681299684477167}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.221284716899388}, "tsne_x": {"value": 26.763908256150724}, "mds3": {"value": -33.75503156957075}, "umap_x": {"value": 11.507049}, "pca2": {"value": 7.913513523333826}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.187682301855891}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.42864}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G18948T", "T26861C"]}}}, {"name": "USA/CO-CDC-MMB12120144/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.9465753424658, "confidence": [2021.9465753424658, 2021.9465753424658]}, "tsne_y": {"value": 4.86439066525498}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Colorado"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.606155629925777}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.6913273557319273}, "tsne_x": {"value": 26.879877392432377}, "mds3": {"value": -40.94747132770036}, "umap_x": {"value": 11.130296}, "pca2": {"value": -1.9845951410488285}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 7.980429957475732}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.949279}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1716T", "C6896T", "G10096A", "G11083T", "C21034T", "G22381T", "G27506T", "C27513T"], "S": ["R273S"]}, "labels": {"aa": "S: R273S"}}}]}, {"name": "NODE_0000178", "node_attrs": {"div": 40, "num_date": {"value": 2021.534903022416, "confidence": [2021.1969825433323, 2021.6341848571626]}}, "branch_attrs": {"mutations": {"nuc": ["A27985T", "C28432T"]}}, "children": [{"name": "USA/NJ-PHEL-V21017462/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.7082191780821, "confidence": [2021.7082191780821, 2021.7082191780821]}, "tsne_y": {"value": 5.034500096256112}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.486790599423324}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 19.403551953563056}, "tsne_x": {"value": 27.092809798748146}, "mds3": {"value": -30.54693289226568}, "umap_x": {"value": 11.407008}, "pca2": {"value": 5.406710536121581}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 8.68744778710695}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.885099}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3293T", "T14709C", "C15569T", "G18674A"]}}}, {"name": "NODE_0000975", "node_attrs": {"div": 40, "num_date": {"value": 2021.5491585876937, "confidence": [2021.199972218876, 2021.6479936244812]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/AZ-CDC-ASC210363585/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.7849315068493, "confidence": [2021.7849315068493, 2021.7849315068493]}, "tsne_y": {"value": 5.0464562553858165}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.43417488443231}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.225839046397991}, "tsne_x": {"value": 27.20351470882253}, "mds3": {"value": -38.37093746497743}, "umap_x": {"value": 11.080414}, "pca2": {"value": -5.312035644623135}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.063529412990507}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.965844}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3264T", "A3643C", "C5055T", "C5812T", "G7393T", "C11653T", "A15046G"]}}}, {"name": "USA/MN-CDC-IBX322870242507/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8068493150686, "confidence": [2021.8068493150686, 2021.8068493150686]}, "tsne_y": {"value": 5.055716592105577}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.100"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 22.991132798750684}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 25.861675954302715}, "tsne_x": {"value": 27.202181942670578}, "mds3": {"value": -36.49610087124248}, "umap_x": {"value": 11.100023}, "pca2": {"value": -1.7567254860247037}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.5594166948921324}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.997648}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2180A", "C12513T", "C14183T", "C20384T", "G20679T", "C24023T", "G25019T"], "S": ["D1153Y"]}, "labels": {"aa": "S: D1153Y"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000180", "node_attrs": {"div": 35, "num_date": {"value": 2021.2065112695666, "confidence": [2021.0182781141339, 2021.3223736371046]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NODE_0000198", "node_attrs": {"div": 36, "num_date": {"value": 2021.2400837263192, "confidence": [2021.0236592421384, 2021.4100288415275]}}, "branch_attrs": {"mutations": {"nuc": ["G24872T"], "S": ["V1104L"]}, "labels": {"aa": "S: V1104L"}}, "children": [{"name": "NODE_0000199", "node_attrs": {"div": 37, "num_date": {"value": 2021.3272084553182, "confidence": [2021.0621201579852, 2021.536694361911]}}, "branch_attrs": {"mutations": {"nuc": ["C2061T"]}}, "children": [{"name": "NODE_0000979", "node_attrs": {"div": 37, "num_date": {"value": 2021.3510986216243, "confidence": [2021.0633531005928, 2021.5422908023788]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-UW21090782026/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6835616438357, "confidence": [2021.6835616438357, 2021.6835616438357]}, "tsne_y": {"value": 5.361301989045201}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 5.908930745953401}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 35.26040752381067}, "tsne_x": {"value": 25.89658075494355}, "mds3": {"value": -33.74766257332924}, "umap_x": {"value": 11.266556}, "pca2": {"value": 34.891134935768704}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 7.924795888654657}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.379567}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G3410T", "G10642T", "C11050T", "C18167T", "C24023T", "C27625T", "T27792C", "T27795A", "-28271A"]}}}, {"name": "USA/CO-CDPHE-2101699435/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_y": {"value": 4.06795607755518}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 1.4510180106308808}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 37.01046680069677}, "tsne_x": {"value": 23.29049713289066}, "mds3": {"value": -42.118758250743255}, "umap_x": {"value": 11.060207}, "pca2": {"value": 0.1770715189647777}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.1693084896690165}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.470075}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G520T", "C5301T", "C7644T", "A8358G", "C9223T", "T15397C", "C22224T", "G27074T", "C29733T"], "S": ["S221L"]}, "labels": {"aa": "S: S221L"}}}]}, {"name": "NODE_0000201", "node_attrs": {"div": 39, "num_date": {"value": 2021.4933642277615, "confidence": [2021.2021067082524, 2021.620637343738]}}, "branch_attrs": {"mutations": {"nuc": ["T2974C", "C23758T"]}}, "children": [{"name": "BRA/ILMD2101180/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_y": {"value": 6.00492389265664}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.75105984398387}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.3118989427667755}, "tsne_x": {"value": 26.40971421737064}, "mds3": {"value": -36.14951725424409}, "umap_x": {"value": 11.029531}, "pca2": {"value": 0.3664207830211509}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.2781665396123156}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.494567}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G101A", "C4809T", "G15438T", "C20594T", "A21987G", "G23593T", "T26047C", "C27389T"], "S": ["D142G", "Q677H"]}, "labels": {"aa": "S: D142G, Q677H"}}}, {"name": "USA/CA-CDC-FG-144577/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.7630136986302, "confidence": [2021.7630136986302, 2021.7630136986302]}, "tsne_y": {"value": 5.417776837829441}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.547824259265731}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.731457888811356}, "tsne_x": {"value": 26.139259392005098}, "mds3": {"value": -42.27365357468258}, "umap_x": {"value": 11.121547}, "pca2": {"value": -6.208593430450415}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 6.894519461462744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.280556}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T2277C", "C6539T", "G13793A", "C22313A", "C26942T", "G28371T", "C29367T"], "S": ["P251T"]}, "labels": {"aa": "S: P251T"}}}]}]}, {"name": "NODE_0000202", "node_attrs": {"div": 40, "num_date": {"value": 2021.349571110333, "confidence": [2021.1394618932604, 2021.472244880693]}}, "branch_attrs": {"mutations": {"nuc": ["T15628C", "G18079T", "A20532G", "C29738T"]}}, "children": [{"name": "NODE_0000982", "node_attrs": {"div": 40, "num_date": {"value": 2021.382995790575, "confidence": [2021.1370716112576, 2021.533696565601]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV3476/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.7547945205479, "confidence": [2021.7547945205479, 2021.7547945205479]}, "tsne_y": {"value": 8.744211890237386}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.640035715697955}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.299472524855686}, "tsne_x": {"value": 27.51808279072036}, "mds3": {"value": -38.13957258817798}, "umap_x": {"value": 11.074954}, "pca2": {"value": -7.288260645232994}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -7.712582678631378}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.548569}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C913T", "T3271A", "A25934G", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A28699T", "G29764T"]}}}, {"name": "NGA/CV3349/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.686301369863, "confidence": [2021.686301369863, 2021.686301369863]}, "tsne_y": {"value": 8.783985682256183}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.704730363253313}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.305751220874675}, "tsne_x": {"value": 27.5660870497954}, "mds3": {"value": -44.23714413058888}, "umap_x": {"value": 11.119752}, "pca2": {"value": -5.043845940124991}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -1.7739764353526457}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.043931}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C6361T", "G11083T", "G17019T", "G18105T", "C21077T", "C27654T", "A27663G"]}}}]}, {"name": "NODE_0000204", "node_attrs": {"div": 41, "num_date": {"value": 2021.380920612588, "confidence": [2021.1694394133053, 2021.4848449289611]}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}, "children": [{"name": "NODE_0000206", "node_attrs": {"div": 42, "num_date": {"value": 2021.4615279177074, "confidence": [2021.264413781406, 2021.5325019231122]}}, "branch_attrs": {"mutations": {"nuc": ["C21077T"]}}, "children": [{"name": "NGA/CV2284/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.6041095890412, "confidence": [2021.6041095890412, 2021.6041095890412]}, "tsne_y": {"value": 8.692024322325619}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.21107164633418}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.62263339618836}, "tsne_x": {"value": 27.418460246461045}, "mds3": {"value": -35.12369279184513}, "umap_x": {"value": 11.542394}, "pca2": {"value": -4.456607654851794}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -3.4648428290399336}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.822917}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C16887T"]}}}, {"name": "NODE_0000207", "node_attrs": {"div": 44, "num_date": {"value": 2021.513562830548, "confidence": [2021.4172417086506, 2021.560833294263]}}, "branch_attrs": {"mutations": {"nuc": ["T224C", "C19862T"]}}, "children": [{"name": "NGA/CV3630/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_y": {"value": 8.767756783267187}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.539179749004837}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.8295165018571455}, "tsne_x": {"value": 27.488791442733977}, "mds3": {"value": -38.21530526050262}, "umap_x": {"value": 11.196056}, "pca2": {"value": -4.764254358233561}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -11.526670658880528}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.106809}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C5079T", "G20176A"]}}}, {"name": "NGA/BCVL-26356/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_y": {"value": 8.766467261298915}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.841093661614623}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 8.87712529774189}, "tsne_x": {"value": 27.486605867635834}, "mds3": {"value": -37.048051511016894}, "umap_x": {"value": 11.215727}, "pca2": {"value": 2.665700313719969}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -10.87867858242573}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.982657}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G18734A", "T19389C", "C25069T"]}}}]}]}, {"name": "NODE_0000987", "node_attrs": {"div": 41, "num_date": {"value": 2021.4119949038509, "confidence": [2021.1678212283427, 2021.5083832013001]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV2359/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5904109589042, "confidence": [2021.5904109589042, 2021.5904109589042]}, "tsne_y": {"value": 8.763780336120995}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.08809147600469}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.288873959883503}, "tsne_x": {"value": 27.48275836575329}, "mds3": {"value": -37.93708755497345}, "umap_x": {"value": 11.17459}, "pca2": {"value": -4.746745630959239}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -11.959140534848457}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.080158}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3411T", "T6598C", "C8660T", "G19723T", "G28817T"]}}}, {"name": "NODE_0000208", "node_attrs": {"div": 42, "num_date": {"value": 2021.4708942894172, "confidence": [2021.2233719250514, 2021.5559859501902]}}, "branch_attrs": {"mutations": {"nuc": ["C26912T"]}}, "children": [{"name": "NGA/CV3061/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_y": {"value": 8.650487184896525}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 12.185933106213191}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 50.01406254472722}, "tsne_x": {"value": 27.34452307446704}, "mds3": {"value": -28.485028373365022}, "umap_x": {"value": 11.509505}, "pca2": {"value": 15.56751749984473}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -3.4900714710421648}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.290221}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G11335T", "A24410G"], "S": ["N950D"]}, "labels": {"aa": "S: N950D"}}}, {"name": "NODE_0000209", "node_attrs": {"div": 43, "num_date": {"value": 2021.5158323242276, "confidence": [2021.2719119059243, 2021.5732318040716]}}, "branch_attrs": {"mutations": {"nuc": ["G29414T"]}}, "children": [{"name": "NGA/CV2305/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.609589041096, "confidence": [2021.609589041096, 2021.609589041096]}, "tsne_y": {"value": 8.7640392068554}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.728777937695924}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.516419440801034}, "tsne_x": {"value": 27.497927376214008}, "mds3": {"value": -35.892443584694504}, "umap_x": {"value": 11.304611}, "pca2": {"value": -10.282488116751455}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -13.209356913625037}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.148261}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C5144T", "C16428T", "G28621T"]}}}, {"name": "NGA/CV3359/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.686301369863, "confidence": [2021.686301369863, 2021.686301369863]}, "tsne_y": {"value": 8.819776983337704}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.981039809665976}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.460007443168874}, "tsne_x": {"value": 27.661232855624217}, "mds3": {"value": -44.67239696580023}, "umap_x": {"value": 11.112689}, "pca2": {"value": -7.961098416021711}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -4.384437112520259}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.598263}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G1598T", "T5014C", "C7932T", "C12141A", "C19524T", "G21987A", "C23758T", "C28107T"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}}]}]}]}, {"name": "NODE_0000211", "node_attrs": {"div": 42, "num_date": {"value": 2021.4200564859918, "confidence": [2021.238820174627, 2021.5]}}, "branch_attrs": {"mutations": {"nuc": ["C26060T"]}}, "children": [{"name": "NGA/CV1968/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5, "confidence": [2021.5, 2021.5]}, "tsne_y": {"value": 8.760290742609987}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.896518890486772}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.4795946233297}, "tsne_x": {"value": 27.47886632960057}, "mds3": {"value": -38.02928026225096}, "umap_x": {"value": 11.206826}, "pca2": {"value": -10.242299565416308}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -11.879772612581066}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.181621}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C5622T", "G7160C", "A7766G", "G19999T"]}}}, {"name": "NODE_0000991", "node_attrs": {"div": 42, "num_date": {"value": 2021.462733433079, "confidence": [2021.2372425437366, 2021.589996898472]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000215", "node_attrs": {"div": 43, "num_date": {"value": 2021.5424035020153, "confidence": [2021.4023974321617, 2021.5983668843223]}}, "branch_attrs": {"mutations": {"nuc": ["G21987A"], "S": ["G142D"]}, "labels": {"aa": "S: G142D"}}, "children": [{"name": "NGA/CV4796/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8287671232877, "confidence": [2021.8287671232877, 2021.8287671232877]}, "tsne_y": {"value": 8.7134490311315}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.8459568216427895}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -1.9972249882439408}, "tsne_x": {"value": 27.448860469299465}, "mds3": {"value": -37.27870199395629}, "umap_x": {"value": 11.371412}, "pca2": {"value": -2.907877057684443}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -3.381093122709446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.895215}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G1505A", "G25621T"]}}}, {"name": "NGA/CV2294/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.6068493150685, "confidence": [2021.6068493150685, 2021.6068493150685]}, "tsne_y": {"value": 8.736913071864738}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.000436552918908}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.430963749399997}, "tsne_x": {"value": 27.484443071970148}, "mds3": {"value": -39.799978011955815}, "umap_x": {"value": 11.203614}, "pca2": {"value": -10.083693469318725}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -3.944530351611161}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.932923}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G8185T", "G12911A", "C14708T"]}}}]}, {"name": "NODE_0000995", "node_attrs": {"div": 42, "num_date": {"value": 2021.4913208966939, "confidence": [2021.2377889333397, 2021.592988007559]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV2642/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.645205479452, "confidence": [2021.645205479452, 2021.645205479452]}, "tsne_y": {"value": 8.748833661531165}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 16.182421611058462}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 27.713401177291068}, "tsne_x": {"value": 27.47509826034337}, "mds3": {"value": -36.15236054260726}, "umap_x": {"value": 11.230067}, "pca2": {"value": -11.37680694686485}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -3.9881631495503367}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.036857}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C21T", "C7299T", "C11866T", "C28344T"]}}}, {"name": "NODE_0000998", "node_attrs": {"div": 42, "num_date": {"value": 2021.5046038281093, "confidence": [2021.2416297071447, 2021.5982021662383]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV2813/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.631506849315, "confidence": [2021.631506849315, 2021.631506849315]}, "tsne_y": {"value": 8.769034558080119}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.443503171167028}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.504323702956527}, "tsne_x": {"value": 27.49382811119748}, "mds3": {"value": -38.25083260829204}, "umap_x": {"value": 11.194677}, "pca2": {"value": -10.288649797964826}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -11.342866683544068}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.03536}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T18132C", "G22199T", "C23694T", "C25096T"], "S": ["V213L", "S711F"]}, "labels": {"aa": "S: V213L, S711F"}}}, {"name": "NGA/CV3126/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.672602739726, "confidence": [2021.672602739726, 2021.672602739726]}, "tsne_y": {"value": 8.814783968083864}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "9"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.36"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.690741210523962}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.484682277705921}, "tsne_x": {"value": 27.538277994205004}, "mds3": {"value": -39.73528282489734}, "umap_x": {"value": 11.07733}, "pca2": {"value": -7.956903455564885}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "8"}, "mds2": {"value": -14.480617487311491}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.2024}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "A11315G", "C19819T", "A26170G", "G28321T", "T29646C"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0000999", "node_attrs": {"div": 35, "num_date": {"value": 2021.2150923015654, "confidence": [2021.0188142733114, 2021.3260167002252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001001", "node_attrs": {"div": 35, "num_date": {"value": 2021.2337850204015, "confidence": [2021.0179007113134, 2021.3672998464676]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000222", "node_attrs": {"div": 36, "num_date": {"value": 2021.2780336719745, "confidence": [2021.0337787889605, 2021.4369617271045]}}, "branch_attrs": {"mutations": {"nuc": ["G25538T"]}}, "children": [{"name": "NODE_0000223", "node_attrs": {"div": 38, "num_date": {"value": 2021.3702648394344, "confidence": [2021.0960715219182, 2021.5494000880055]}}, "branch_attrs": {"mutations": {"nuc": ["C26054A", "G28378T"]}}, "children": [{"name": "USA/CO-CDPHE-2102219895/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8643835616438, "confidence": [2021.8643835616438, 2021.8643835616438]}, "tsne_y": {"value": 3.614875710992704}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.127"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.018883702209232}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 2.1373309128316578}, "tsne_x": {"value": 23.257586999925504}, "mds3": {"value": -42.54836213400117}, "umap_x": {"value": 11.1667185}, "pca2": {"value": 0.7047330571486513}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 9.270561727251351}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.084407}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2790T", "G9190T", "C10507T", "T15599C", "G18028A", "G22093C", "C25626T", "G27916A", "T29038C"], "S": ["M177I"]}, "labels": {"aa": "S: M177I"}}}, {"name": "PAK/251491/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.809589041096, "confidence": [2021.809589041096, 2021.809589041096]}, "tsne_y": {"value": 4.932822602314752}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.127"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Sindh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.206674331935183}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 7.295470993814025}, "tsne_x": {"value": 26.18729574217859}, "mds3": {"value": -43.081837560124654}, "umap_x": {"value": 11.133834}, "pca2": {"value": 16.464087346439204}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 11.19698842971515}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.61825}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1420T", "C1473T", "C2485T", "A2647G", "G6622A", "C8917T", "G14511C", "G18255T", "G18397A", "G19086A", "C19164T", "A22600T", "C24463T", "T25518C", "G25784T", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "A28358T", "C29358T", "C29686T"], "S": ["R346S"]}, "labels": {"aa": "S: R346S"}}}]}, {"name": "NODE_0000224", "node_attrs": {"div": 47, "num_date": {"value": 2021.787643066465, "confidence": [2021.7244220831367, 2021.7876712328766]}}, "branch_attrs": {"mutations": {"nuc": ["A691G", "C1549T", "T1871G", "A2903G", "C6040T", "C14790T", "G17721T", "A19068G", "A22305C", "C22326T", "A22862G"], "S": ["Y248S", "S255F", "I434V"]}, "labels": {"aa": "S: Y248S, S255F, I434V"}}, "children": [{"name": "BHR/21921810873/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.8287671232877, "confidence": [2021.8287671232877, 2021.8287671232877]}, "tsne_y": {"value": 2.343948832076534}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 16.83563403878721}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 38.72652301756548}, "tsne_x": {"value": 23.33768251342597}, "mds3": {"value": -36.99000247187813}, "umap_x": {"value": 10.98848}, "pca2": {"value": -7.071966140995929}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -14.175344141220398}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.222953}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}, {"name": "BHR/21342681441/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_y": {"value": 2.386091726963024}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 13.946353455593032}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 54.79736558896509}, "tsne_x": {"value": 23.395528889252333}, "mds3": {"value": -34.661824793186675}, "umap_x": {"value": 11.292517}, "pca2": {"value": 3.756067484948467}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 11.787418478855775}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.151248}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000229", "node_attrs": {"div": 36, "num_date": {"value": 2021.2858202717973, "confidence": [2021.0945198572663, 2021.4033136534445]}}, "branch_attrs": {"mutations": {"nuc": ["G16914T"]}}, "children": [{"name": "USA/NH-CDCBI-CRSP_CBCADT5V24F6DZPR/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8534246575343, "confidence": [2021.8534246575343, 2021.8534246575343]}, "tsne_y": {"value": 4.640301839443366}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.114"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Hampshire"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.249827288215911}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.245254709930392}, "tsne_x": {"value": 23.230750996177548}, "mds3": {"value": -37.61176360135436}, "umap_x": {"value": 11.149631}, "pca2": {"value": 3.289955581959005}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 7.726269217775746}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.761076}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C884T", "C2706T", "C6848A", "G8117T", "G17658T", "A19020T", "G19677T", "C27513T", "C29545T"]}}}, {"name": "NODE_0000230", "node_attrs": {"div": 42, "num_date": {"value": 2021.4628781770996, "confidence": [2021.407300971432, 2021.4995841185253]}}, "branch_attrs": {"mutations": {"nuc": ["A708G", "C1825T", "T17748A", "C25810T", "G26428T", "C26873T"]}}, "children": [{"name": "THA/MTM_01_004/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.7904109589042, "confidence": [2021.7904109589042, 2021.7904109589042]}, "tsne_y": {"value": 3.5974909029605646}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.85"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.5239136197810443}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.081954792904827}, "tsne_x": {"value": 22.07865799205227}, "mds3": {"value": -46.011835835410345}, "umap_x": {"value": 11.1072235}, "pca2": {"value": 19.50191258273416}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -11.62693575395017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.691076}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C3170T", "C14491T", "A17406G", "G19981A", "A20420G", "G21451A", "G27390A", "G29202A"]}}}, {"name": "NODE_0000231", "node_attrs": {"div": 43, "num_date": {"value": 2021.5, "confidence": [2021.4713484121144, 2021.5]}}, "branch_attrs": {"mutations": {"nuc": ["G19072T"]}}, "children": [{"name": "THA/AFRIMS-COV1515/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5, "confidence": [2021.5, 2021.5]}, "tsne_y": {"value": 3.679760839353715}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.85"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Kamphaeng Phet"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.25203232031718}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.128464156833042}, "tsne_x": {"value": 22.180532759146764}, "mds3": {"value": -36.47940237549879}, "umap_x": {"value": 11.40216}, "pca2": {"value": -9.551892238180976}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.7795015006225783}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.323868}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001008", "node_attrs": {"div": 43, "num_date": {"value": 2021.543656940339, "confidence": [2021.45707679969, 2021.6055949846414]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/AFRIMS-COV8576/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.8643835616438, "confidence": [2021.8643835616438, 2021.8643835616438]}, "tsne_y": {"value": 3.623010705683005}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.85"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Kamphaeng Phet"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.574160466725202}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.238763271670645}, "tsne_x": {"value": 22.12472667432796}, "mds3": {"value": -39.312325241832205}, "umap_x": {"value": 11.080801}, "pca2": {"value": -7.556231656109035}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.980919364593883}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.227083}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G4255A", "G7406A", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "G28966T"]}}}, {"name": "LAO/LOMWRU-0818/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.631506849315, "confidence": [2021.631506849315, 2021.631506849315]}, "tsne_y": {"value": 3.636890042111367}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.85"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Khammouan"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.645267009733107}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.631102185816331}, "tsne_x": {"value": 22.146314171667573}, "mds3": {"value": -36.818694793212266}, "umap_x": {"value": 11.1743965}, "pca2": {"value": 29.83327386292955}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.872129968456619}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.773434}, "country": {"value": "Laos"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T9316C", "C13197T"]}}}]}]}]}]}]}, {"name": "NODE_0001009", "node_attrs": {"div": 35, "num_date": {"value": 2021.2311115060022, "confidence": [2021.0210768137129, 2021.327397260274]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BTN/RCDC0024-SV210162/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.327397260274, "confidence": [2021.327397260274, 2021.327397260274]}, "tsne_y": {"value": 6.009255968558955}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bhutan"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.580969791406304}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.549975430291936}, "tsne_x": {"value": 24.542843300750537}, "mds3": {"value": -33.776787704652406}, "umap_x": {"value": 11.533719}, "pca2": {"value": -14.002262957508512}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.139361402634015}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.422973}, "country": {"value": "Bhutan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C17678T", "C24138T", "G25775T", "A29413T"], "S": ["T859I"]}, "labels": {"aa": "S: T859I"}}}, {"name": "NODE_0001010", "node_attrs": {"div": 35, "num_date": {"value": 2021.243308148013, "confidence": [2021.00204036371, 2021.3778388042758]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000227", "node_attrs": {"div": 36, "num_date": {"value": 2021.3267038402025, "confidence": [2021.087330243085, 2021.410847498835]}}, "branch_attrs": {"mutations": {"nuc": ["C7851T"]}}, "children": [{"name": "Denmark/DCGC-186771/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.7931506849316, "confidence": [2021.7931506849316, 2021.7931506849316]}, "tsne_y": {"value": 4.8058142982787855}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Hovedstaden"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.065055581327196}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.4691158490284733}, "tsne_x": {"value": 22.19014436373221}, "mds3": {"value": -44.649337714590295}, "umap_x": {"value": 11.150242}, "pca2": {"value": -0.6216214470765893}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 6.937843674375923}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.880281}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2706T", "T4930C", "T5653C", "C8106T", "C15755T", "C16338T", "G16622A", "T17290C", "C21575T", "C21742T", "C21811T", "T27722C"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0000228", "node_attrs": {"div": 37, "num_date": {"value": 2021.395618447137, "confidence": [2021.2675975730433, 2021.4342465753425]}}, "branch_attrs": {"mutations": {"nuc": ["T17040C"]}}, "children": [{"name": "OX113521", "node_attrs": {"div": 45, "num_date": {"value": 2021.7931506849316, "confidence": [2021.7931506849316, 2021.7931506849316]}, "tsne_y": {"value": 4.931491761193918}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Baden-Wuerttemberg"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.715396305203916}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.523623772152948}, "tsne_x": {"value": 22.725521421933845}, "mds3": {"value": -38.80014589962487}, "umap_x": {"value": 11.070308}, "pca2": {"value": 4.559390943778332}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 7.030961757688027}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.4638815}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A8734G", "T16056C", "T17970C", "G19549T", "G20348A", "T26159-", "T26160-", "A26161-", "C28863T", "C29370T", "C29679T"]}}}, {"name": "NZL/21MV0487/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4342465753425, "confidence": [2021.4342465753425, 2021.4342465753425]}, "tsne_y": {"value": 6.489857821600452}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.4"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 7.716075216954628}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 44.95133305262861}, "tsne_x": {"value": 24.56190031422611}, "mds3": {"value": -29.78686701318688}, "umap_x": {"value": 11.589859}, "pca2": {"value": 0.2235513418000049}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.8012283728846266}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.457349}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C18115T"]}}}]}]}, {"name": "NODE_0001013", "node_attrs": {"div": 35, "num_date": {"value": 2021.2662265482238, "confidence": [2021.000506332145, 2021.3768983767616]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000194", "node_attrs": {"div": 36, "num_date": {"value": 2021.3290763084917, "confidence": [2021.0805129433982, 2021.4198216579548]}}, "branch_attrs": {"mutations": {"nuc": ["C745T"]}}, "children": [{"name": "OQ439761", "node_attrs": {"div": 42, "num_date": {"value": 2021.4972602739726, "confidence": [2021.4972602739726, 2021.4972602739726]}, "tsne_y": {"value": 5.73483633397969}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "AY.108"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Sindh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 5.207439838276802}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 24.177295136563743}, "tsne_x": {"value": 24.97322849257465}, "mds3": {"value": -36.24994175313575}, "umap_x": {"value": 11.37301}, "pca2": {"value": -0.9397452679153778}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.346250735741958}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.971391}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G370T", "C823T", "C6828T", "C11109T", "G22026T", "C25587T"], "S": ["S155I"]}, "labels": {"aa": "S: S155I"}}}, {"name": "BGD/Laila_602/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6890410958904, "confidence": [2021.6890410958904, 2021.6890410958904]}, "tsne_y": {"value": 5.590928831310377}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 6.418490201987707}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 73.61672780998737}, "tsne_x": {"value": 25.016807440464056}, "mds3": {"value": -28.469937141361903}, "umap_x": {"value": 11.580146}, "pca2": {"value": 3.181173393452171}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.004132740803916}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.514974}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G174A", "C4893T", "C7600T", "C10448T", "-22029A", "-22030G", "-22031T", "-22032T", "-22033C", "-22034A", "C29738A"], "S": ["X156E", "-157F", "X158R", "X1274*"]}, "labels": {"aa": "S: X156E, -157F, X158R, X1274*"}}}]}, {"name": "NODE_0001015", "node_attrs": {"div": 35, "num_date": {"value": 2021.2796835018721, "confidence": [2021.0010053820308, 2021.4666321716786]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001018", "node_attrs": {"div": 35, "num_date": {"value": 2021.2934176256806, "confidence": [2021.0013969219006, 2021.4688930298353]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000196", "node_attrs": {"div": 39, "num_date": {"value": 2021.4620262177812, "confidence": [2021.2111441591862, 2021.6011475257915]}}, "branch_attrs": {"mutations": {"nuc": ["C14925T", "A21137G", "A24110C", "A25439C"], "S": ["I850L"]}, "labels": {"aa": "S: I850L"}}, "children": [{"name": "Denmark/DCGC-173309/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.6780821917807, "confidence": [2021.6780821917807, 2021.6780821917807]}, "tsne_y": {"value": 4.181920395322755}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.126"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Midtjylland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.808377658137985}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.2008683317387927}, "tsne_x": {"value": 26.29751903648049}, "mds3": {"value": -37.98531099547642}, "umap_x": {"value": 11.098775}, "pca2": {"value": 19.07363751424285}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.75140234976401}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.295018}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G6337A", "C13255T", "G13304T", "C16596T", "G21193T", "C22326T", "A25814G"], "S": ["S255F"]}, "labels": {"aa": "S: S255F"}}}, {"name": "IMS-10350-CVDP-5A4445AA-49C8-4FF6-8496-372559B70544", "node_attrs": {"div": 49, "num_date": {"value": 2021.927397260274, "confidence": [2021.927397260274, 2021.927397260274]}, "tsne_y": {"value": 3.917432446998412}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.126"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.47756029924992}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 0.975874118188451}, "tsne_x": {"value": 26.378128738139345}, "mds3": {"value": -42.80754520658586}, "umap_x": {"value": 11.12615}, "pca2": {"value": -0.633885084351007}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.394528601807358}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.52973}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A2111G", "A3278G", "C5512T", "A11911G", "C13458T", "A13953G", "A16797G", "T16896C", "C23320T", "C25578T", "C27538-", "T27539-", "A27540-", "G27541-", "C27542-", "T27543-", "G27544-", "A27545-", "T27546-", "A27547-", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "A27624-", "C27625-", "G27626-", "T27627-", "G27628-"]}}}]}, {"name": "NODE_0001022", "node_attrs": {"div": 35, "num_date": {"value": 2021.3270400690362, "confidence": [2020.9991993952083, 2021.4664858045724]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0519/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4835616438356, "confidence": [2021.4835616438356, 2021.4835616438356]}, "tsne_y": {"value": 6.036005832680394}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.40716785923594}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.187839135849571}, "tsne_x": {"value": 24.56604169021669}, "mds3": {"value": -32.80977795875427}, "umap_x": {"value": 11.546777}, "pca2": {"value": 11.403587124251922}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.1288537439101093}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.04033}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1326T", "C6031T", "T13188C", "C22264T"]}}}, {"name": "NODE_0001023", "node_attrs": {"div": 35, "num_date": {"value": 2021.3354622116296, "confidence": [2021.0002422226348, 2021.469906823937]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000221", "node_attrs": {"div": 39, "num_date": {"value": 2021.4931893123899, "confidence": [2021.2132290195877, 2021.613992999229]}}, "branch_attrs": {"mutations": {"nuc": ["G2202T", "G14186T", "C15810T", "C28708T"]}}, "children": [{"name": "USA/MA-CDCBI-CRSP_2KDZO2BCSBLS7I67/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8013698630136, "confidence": [2021.8013698630136, 2021.8013698630136]}, "tsne_y": {"value": 5.955485329067929}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.117"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.48625294172898}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.303066767550435}, "tsne_x": {"value": 26.19725243918073}, "mds3": {"value": -39.793353652090005}, "umap_x": {"value": 11.105603}, "pca2": {"value": -14.906734199199311}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.851423477327537}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.081534}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C7905T", "G18412A", "G19525T", "C22313T", "C25460G", "G28209T", "C28948T", "G29737T"], "S": ["P251S"]}, "labels": {"aa": "S: P251S"}}}, {"name": "USA/MN-CDC-IBX820470718564/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.7986301369863, "confidence": [2021.7986301369863, 2021.7986301369863]}, "tsne_y": {"value": 6.613078329429392}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.117"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.568066979418353}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 16.73638252433975}, "tsne_x": {"value": 26.22847674854758}, "mds3": {"value": -38.67425808845982}, "umap_x": {"value": 10.994372}, "pca2": {"value": -7.570057876993941}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 10.333813420058917}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.478522}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A1808C", "G3047T", "A3722G", "G15768A", "C16877T", "G17790T", "A21987G", "C23373T", "G24199T"], "S": ["D142G", "T604I"]}, "labels": {"aa": "S: D142G, T604I"}}}]}, {"name": "NODE_0000242", "node_attrs": {"div": 38, "num_date": {"value": 2021.4093016229642, "confidence": [2021.2320011110667, 2021.5209949870873]}}, "branch_attrs": {"mutations": {"nuc": ["A17236G", "T21846C", "C24208T"], "S": ["I95T"]}, "labels": {"aa": "S: I95T"}}, "children": [{"name": "USA/MI-CDC-ASC210160088/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.5465753424658, "confidence": [2021.5465753424658, 2021.5465753424658]}, "tsne_y": {"value": 6.864179437770432}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.57743741360292}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.555002346606472}, "tsne_x": {"value": 23.71347190688984}, "mds3": {"value": -29.534190567066144}, "umap_x": {"value": 11.4953165}, "pca2": {"value": -8.503838426692392}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.294183334560731}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.232153}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A18360G", "A21987G", "A24410G", "C25702T", "G28895T"], "S": ["D142G", "N950D"]}, "labels": {"aa": "S: D142G, N950D"}}}, {"name": "NODE_0001026", "node_attrs": {"div": 38, "num_date": {"value": 2021.4286886123011, "confidence": [2021.2335730225204, 2021.5290152468936]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000252", "node_attrs": {"div": 40, "num_date": {"value": 2021.5345482737755, "confidence": [2021.3974683614795, 2021.5613536666572]}}, "branch_attrs": {"mutations": {"nuc": ["A12466G", "C18486T"]}}, "children": [{"name": "USA/NJ-CDC-FG-173354/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8616438356164, "confidence": [2021.8616438356164, 2021.8616438356164]}, "tsne_y": {"value": 6.295073377241802}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Jersey"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.531111675686482}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.74389033757698}, "tsne_x": {"value": 22.93166651542975}, "mds3": {"value": -38.68283643423298}, "umap_x": {"value": 11.054445}, "pca2": {"value": -6.217480021919357}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -12.726189877864268}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.418224}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G9494A", "G17334T", "G18948T", "G19735T", "C25317T", "G25690T", "G28122T"], "S": ["S1252F"]}, "labels": {"aa": "S: S1252F"}}}, {"name": "USA/GA-CDC-LC0138803/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5739726027398, "confidence": [2021.5739726027398, 2021.5739726027398]}, "tsne_y": {"value": 6.473264986852952}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Georgia"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.771673488597855}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.0854199645288665}, "tsne_x": {"value": 23.43675954199343}, "mds3": {"value": -34.72090530331196}, "umap_x": {"value": 11.5205965}, "pca2": {"value": 1.9230466270560245}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.701721931843277}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.134595}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G10870T", "A17233G"]}}}]}, {"name": "NODE_0001028", "node_attrs": {"div": 38, "num_date": {"value": 2021.4675354350645, "confidence": [2021.230426684867, 2021.5265179771063]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000248", "node_attrs": {"div": 42, "num_date": {"value": 2021.5461917642306, "confidence": [2021.397229373778, 2021.6281462137724]}}, "branch_attrs": {"mutations": {"nuc": ["A6022G", "C8956T", "C27005T", "C27999T"]}}, "children": [{"name": "USA/MA-CDCBI-CRSP_DB76QBQFRGJGRO2L/2021", "node_attrs": {"div": 50, "num_date": {"value": 2021.7575342465752, "confidence": [2021.7575342465752, 2021.7575342465752]}, "tsne_y": {"value": 6.345723849625931}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.198082530647293}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.30166342070976}, "tsne_x": {"value": 22.267584676036964}, "mds3": {"value": -45.13553495678442}, "umap_x": {"value": 11.095666}, "pca2": {"value": -12.149873006813058}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.813038539147812}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.812214}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1346A", "G4300T", "C5497T", "G14400A", "C18555T", "C18657T", "C25517T", "G29254T"]}}}, {"name": "USA/MI-CDC-ASC210093446/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.7301369863014, "confidence": [2021.7301369863014, 2021.7301369863014]}, "tsne_y": {"value": 6.443129534817224}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.0775167583122114}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.376421551283422}, "tsne_x": {"value": 22.37069914156516}, "mds3": {"value": -41.44065245665997}, "umap_x": {"value": 11.047947}, "pca2": {"value": -8.004670744344871}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.024420501940394}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.664222}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G4184A", "C5025T", "C16092T", "C21110T", "T21369C", "A21987G"], "S": ["D142G"]}, "labels": {"aa": "S: D142G"}}}]}, {"name": "NODE_0001032", "node_attrs": {"div": 38, "num_date": {"value": 2021.4887800701317, "confidence": [2021.1861250201755, 2021.5574092800523]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000253", "node_attrs": {"div": 39, "num_date": {"value": 2021.5380664158147, "confidence": [2021.385273902585, 2021.5994408542256]}}, "branch_attrs": {"mutations": {"nuc": ["T27291C"]}}, "children": [{"name": "USA/DE-CDC-LC0290463/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7219178082191, "confidence": [2021.7219178082191, 2021.7219178082191]}, "tsne_y": {"value": 6.491165930354067}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Delaware"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.715975438823554}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.9806130327720592}, "tsne_x": {"value": 23.42995034701146}, "mds3": {"value": -35.108981274272736}, "umap_x": {"value": 11.410488}, "pca2": {"value": 4.989039074738544}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -4.079540212260109}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.177207}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "A2069T", "A11600G"]}}}, {"name": "NODE_0000254", "node_attrs": {"div": 40, "num_date": {"value": 2021.5657343692317, "confidence": [2021.49030280526, 2021.6171299859059]}}, "branch_attrs": {"mutations": {"nuc": ["G6421T"]}}, "children": [{"name": "USA/WV-CDC-IBX137795187212/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_y": {"value": 6.556387898684752}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "West Virginia"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.194673695286268}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.171393881232032}, "tsne_x": {"value": 22.975990721501056}, "mds3": {"value": -35.72740783194846}, "umap_x": {"value": 11.080588}, "pca2": {"value": -7.011525286258233}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -14.5503103970636}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.062958}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1426T", "C5144T", "C8290T", "C21304A", "A21987G", "G22111T", "G27750T"], "S": ["D142G", "Q183H"]}, "labels": {"aa": "S: D142G, Q183H"}}}, {"name": "NODE_0001035", "node_attrs": {"div": 40, "num_date": {"value": 2021.5901423977894, "confidence": [2021.4943707555485, 2021.623287671233]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-FG-080883/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.623287671233, "confidence": [2021.623287671233, 2021.623287671233]}, "tsne_y": {"value": 6.52418703507745}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.62940604485914}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.720842909200154}, "tsne_x": {"value": 23.520433946161507}, "mds3": {"value": -33.01550941452763}, "umap_x": {"value": 11.534625}, "pca2": {"value": -4.054814763966}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.936575047566921}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.023723}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G19292T"]}}}, {"name": "USA/CO-CDC-MMB11412944/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.83698630137, "confidence": [2021.83698630137, 2021.83698630137]}, "tsne_y": {"value": 6.336416584729515}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Colorado"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.8783633136038005}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.736853577506263}, "tsne_x": {"value": 22.77227942307112}, "mds3": {"value": -44.074791960834105}, "umap_x": {"value": 11.064633}, "pca2": {"value": -2.008050322139165}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.5046151978868558}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.133004}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C643T", "C1288T", "G3307T", "G13558T", "C14848T", "C19961T", "G25489T", "G28541T"]}}}]}]}]}, {"name": "NODE_0001036", "node_attrs": {"div": 38, "num_date": {"value": 2021.51614569077, "confidence": [2021.1966524453464, 2021.5662908454012]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-CDC-STM-000727061/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_y": {"value": 6.5607329243000105}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.521364141711295}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.99427582290645}, "tsne_x": {"value": 23.600731118671803}, "mds3": {"value": -34.86247630832993}, "umap_x": {"value": 11.543332}, "pca2": {"value": -10.996192093765588}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -3.661073560328338}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.135239}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G208T", "C5812T", "C20389T", "G22113A", "G25690T"], "S": ["G184D"]}, "labels": {"aa": "S: G184D"}}}, {"name": "NODE_0001038", "node_attrs": {"div": 38, "num_date": {"value": 2021.5434071759348, "confidence": [2021.1985152715392, 2021.6025099659585]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NE-001134/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_y": {"value": 6.5012219776422775}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Nebraska"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.008548849770117}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.451279659625514}, "tsne_x": {"value": 23.51033785447484}, "mds3": {"value": -32.460038016912975}, "umap_x": {"value": 11.495055}, "pca2": {"value": 30.963289232749528}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.121561606477388}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.508769}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C539T", "G1820A", "C6031T", "C10449T"]}}}, {"name": "NODE_0001039", "node_attrs": {"div": 38, "num_date": {"value": 2021.5789040183388, "confidence": [2021.5027173613114, 2021.650684931507]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/KY-CDC-LC0229041/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.650684931507, "confidence": [2021.650684931507, 2021.650684931507]}, "tsne_y": {"value": 6.631451855289417}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Kentucky"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.509785865445888}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.300024693645334}, "tsne_x": {"value": 23.99118853785849}, "mds3": {"value": -29.64113262665792}, "umap_x": {"value": 11.5829315}, "pca2": {"value": 8.34259919474935}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -2.942923805660901}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.466013}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001041", "node_attrs": {"div": 38, "num_date": {"value": 2021.6040985188129, "confidence": [2021.5028069653983, 2021.6962748448448]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/OH-CDC-FG-141759/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7438356164384, "confidence": [2021.7438356164384, 2021.7438356164384]}, "tsne_y": {"value": 6.473631693593255}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Ohio"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.892650546444292}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.224732532051665}, "tsne_x": {"value": 23.42033664976545}, "mds3": {"value": -35.32683422004254}, "umap_x": {"value": 11.351461}, "pca2": {"value": -5.936131845030487}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -5.825193747250248}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.378315}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C7376T", "C17733T", "G21608T", "C25810T", "G29781T"], "S": ["V16F"]}, "labels": {"aa": "S: V16F"}}}, {"name": "NODE_0001042", "node_attrs": {"div": 38, "num_date": {"value": 2021.6359937039194, "confidence": [2021.5004434799537, 2021.702110369639]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-CDCBI-CRSP_5GQSDFEERK3GHOOK/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8698630136987, "confidence": [2021.8698630136987, 2021.8698630136987]}, "tsne_y": {"value": 6.396846679548736}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.308595181810094}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 13.927473023633896}, "tsne_x": {"value": 23.17348580312356}, "mds3": {"value": -37.93106627778901}, "umap_x": {"value": 11.244692}, "pca2": {"value": -8.324177371020266}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -6.955020050093301}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.035026}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G561A", "C1943T", "C3923T", "C4890T", "A12449G", "G16968A", "G27659T"]}}}, {"name": "USA/MA-CDCBI-CRSP_EO6HUGYDG4DI7A4V/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.9136986301369, "confidence": [2021.9136986301369, 2021.9136986301369]}, "tsne_y": {"value": 6.3100560872863785}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.103"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.103"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.413401010544192}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.77843969754802}, "tsne_x": {"value": 22.99987847655546}, "mds3": {"value": -38.95491517756}, "umap_x": {"value": 11.145513}, "pca2": {"value": -16.809740294568766}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -7.585511290365553}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.348098}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T2158C", "G7042T", "C8318A", "C12781T", "G20397A", "C23422T", "C23595T", "G29587A"], "S": ["T678I"]}, "labels": {"aa": "S: T678I"}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001043", "node_attrs": {"div": 35, "num_date": {"value": 2021.303537609805, "confidence": [2021.0891186204408, 2021.5215248687343]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001044", "node_attrs": {"div": 35, "num_date": {"value": 2021.3310382147633, "confidence": [2021.0889115316302, 2021.5369794068336]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001046", "node_attrs": {"div": 35, "num_date": {"value": 2021.3401810820708, "confidence": [2021.0908243058095, 2021.5539672468246]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001047", "node_attrs": {"div": 35, "num_date": {"value": 2021.3747259132174, "confidence": [2021.0894440640313, 2021.5702749581692]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV586462", "node_attrs": {"div": 48, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_y": {"value": 5.201913547182512}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Saxony"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.2001294093401487}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.798285826918975}, "tsne_x": {"value": 25.934853359401675}, "mds3": {"value": -42.870764430819726}, "umap_x": {"value": 11.080245}, "pca2": {"value": 18.95154225920952}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 7.713703048851741}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.032885}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A1565G", "C1594A", "C2143T", "C3535T", "A3928G", "T6661C", "G10121A", "T11227C", "A12410G", "C20270T", "A20465G", "C21707T", "C27649T"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}}, {"name": "NODE_0000188", "node_attrs": {"div": 37, "num_date": {"value": 2021.5436037887582, "confidence": [2021.4518573833516, 2021.5767123287671]}}, "branch_attrs": {"mutations": {"nuc": ["C8829T", "G19006T"]}}, "children": [{"name": "USA/FL-CDC-LC0151542/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.5767123287671, "confidence": [2021.5767123287671, 2021.5767123287671]}, "tsne_y": {"value": 6.080117912802981}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.119"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.904207442162948}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.318940857675209}, "tsne_x": {"value": 24.58747544513084}, "mds3": {"value": -32.133566007140864}, "umap_x": {"value": 11.649954}, "pca2": {"value": 11.510576716786352}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.3758078726619286}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.111259}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2706T"]}}}, {"name": "USA/WI-CDC-LC0412670/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.9027397260274, "confidence": [2021.9027397260274, 2021.9027397260274]}, "tsne_y": {"value": 5.6301187268561215}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.119"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Wisconsin"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.626310624049172}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.036644425551575}, "tsne_x": {"value": 24.40707003008724}, "mds3": {"value": -36.290766018851016}, "umap_x": {"value": 11.534039}, "pca2": {"value": 5.426021428546132}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.6791412312883085}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.673068}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G11083T", "G14087T", "G14088T", "C26606T", "G29540T"]}}}]}]}, {"name": "NODE_0000190", "node_attrs": {"div": 44, "num_date": {"value": 2021.5344053576487, "confidence": [2021.4284307846333, 2021.5835506236067]}}, "branch_attrs": {"mutations": {"nuc": ["G9441T", "G18255T", "C22498T", "G23593C", "C25355T", "G26109A", "C26681T", "G27014T", "C28961T"], "S": ["Q677H", "L1265F"]}, "labels": {"aa": "S: Q677H, L1265F"}}, "children": [{"name": "GMB/17588/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_y": {"value": 2.7082721380516217}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.34.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Gambia"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 3.287681639484849}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 45.66233146121138}, "tsne_x": {"value": 26.912421269060808}, "mds3": {"value": -43.89406196571866}, "umap_x": {"value": 11.074945}, "pca2": {"value": 0.5008356013147081}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -5.9141994762890855}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.062363}, "country": {"value": "Gambia"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A3196C", "G14746A", "G14854A", "C17125T"]}}}, {"name": "NODE_0000191", "node_attrs": {"div": 45, "num_date": {"value": 2021.5897012671094, "confidence": [2021.4905344896135, 2021.7263549612203]}}, "branch_attrs": {"mutations": {"nuc": ["G8017T"]}}, "children": [{"name": "BRA/SP-NVBS11340GENOV828478874592/2021", "node_attrs": {"div": 49, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_y": {"value": 2.697055925227435}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.34.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.5819079429972467}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.998567795568943}, "tsne_x": {"value": 26.928681596876423}, "mds3": {"value": -46.53256468286458}, "umap_x": {"value": 11.093201}, "pca2": {"value": -3.3698616862996547}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -3.4139187129070128}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.726811}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G11243T", "C17766T", "C22689T", "G27670A"], "S": ["T376I"]}, "labels": {"aa": "S: T376I"}}}, {"name": "NODE_0000192", "node_attrs": {"div": 48, "num_date": {"value": 2021.7327257974669, "confidence": [2021.6010673653534, 2021.7990624754273]}}, "branch_attrs": {"mutations": {"nuc": ["G1980A", "G25599T", "C27573T"]}}, "children": [{"name": "BRA/SP-NVBS11287GENOV828490661026/2021", "node_attrs": {"div": 53, "num_date": {"value": 2021.9191780821918, "confidence": [2021.9191780821918, 2021.9191780821918]}, "tsne_y": {"value": 2.6815814070805883}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.34.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.4288701102459005}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.072111429984682}, "tsne_x": {"value": 26.93352053277312}, "mds3": {"value": -50.44639491615968}, "umap_x": {"value": 11.090909}, "pca2": {"value": -3.334462955509849}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -6.576289661439497}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.571368}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C10252T", "C16111T", "G19563A", "G21641T", "C28236T"], "S": ["A27S"]}, "labels": {"aa": "S: A27S"}}}, {"name": "BRA/RJ-NVBS9558GENOV700955858670/2021", "node_attrs": {"div": 51, "num_date": {"value": 2021.8397260273973, "confidence": [2021.8397260273973, 2021.8397260273973]}, "tsne_y": {"value": 2.6833532149951496}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.34.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.3722735924259615}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.888024848491564}, "tsne_x": {"value": 26.94753241300592}, "mds3": {"value": -47.19034791049942}, "umap_x": {"value": 11.074584}, "pca2": {"value": -6.734105893284601}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": -9.10276407229342}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.596544}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A21987G", "G24794T", "G28378T"], "S": ["D142G", "A1078S"]}, "labels": {"aa": "S: D142G, A1078S"}}}]}]}]}]}, {"name": "NODE_0001056", "node_attrs": {"div": 35, "num_date": {"value": 2021.349724831487, "confidence": [2021.0902689362151, 2021.5442615561974]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000182", "node_attrs": {"div": 37, "num_date": {"value": 2021.4675282838969, "confidence": [2021.2316848373948, 2021.5470116336714]}}, "branch_attrs": {"mutations": {"nuc": ["T826C", "A27338T"]}}, "children": [{"name": "NODE_0000183", "node_attrs": {"div": 38, "num_date": {"value": 2021.5428541700649, "confidence": [2021.3917110053094, 2021.6191273326863]}}, "branch_attrs": {"mutations": {"nuc": ["C4321T"]}}, "children": [{"name": "USA/MA-CDCBI-CRSP_EF3X2SAYYYWSIKHX/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6835616438357, "confidence": [2021.6835616438357, 2021.6835616438357]}, "tsne_y": {"value": 5.698729739114526}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.118"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.7000102575180422}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.139952296475888}, "tsne_x": {"value": 25.241154024178403}, "mds3": {"value": -37.144009201627824}, "umap_x": {"value": 11.279566}, "pca2": {"value": -11.924475959319905}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.4068250705924264}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.9888}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T3178C", "C14524T", "C17463T", "G28681A"]}}}, {"name": "USA/NMDOH-2021240193/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.982191780822, "confidence": [2021.982191780822, 2021.982191780822]}, "tsne_y": {"value": 5.533515993082376}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.118"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.252205186243518}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.6547685317924685}, "tsne_x": {"value": 25.57590963739638}, "mds3": {"value": -37.570075849637455}, "umap_x": {"value": 11.068496}, "pca2": {"value": 12.2911656587114}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.5493852073881382}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.640219}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G10271A", "A12187G", "T18396C", "A25038G", "G25444A", "C28657T"], "S": ["H1159R"]}, "labels": {"aa": "S: H1159R"}}}]}, {"name": "NODE_0001060", "node_attrs": {"div": 37, "num_date": {"value": 2021.4748564733395, "confidence": [2021.2376160013305, 2021.5575342465754]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDPH-3000126857/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5575342465754, "confidence": [2021.5575342465754, 2021.5575342465754]}, "tsne_y": {"value": 5.697666050152336}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.118"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 9.992810499174288}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 26.29024831276841}, "tsne_x": {"value": 25.063699213182225}, "mds3": {"value": -30.45165042299857}, "umap_x": {"value": 11.608983}, "pca2": {"value": -16.354681989608743}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.8176608008073059}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.288054}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C9142T", "C15280T", "C26527T", "C29870A"]}}}, {"name": "NODE_0000185", "node_attrs": {"div": 39, "num_date": {"value": 2021.6040390458227, "confidence": [2021.4751662086628, 2021.7254656032223]}}, "branch_attrs": {"mutations": {"nuc": ["C17012T", "C17676T"]}}, "children": [{"name": "COM/SS3793/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7904109589042, "confidence": [2021.7904109589042, 2021.7904109589042]}, "tsne_y": {"value": 5.665246841727993}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.118"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Union of the Comoros"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.551233198166543}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.6501598825346737}, "tsne_x": {"value": 25.073408692619044}, "mds3": {"value": -37.26214978466068}, "umap_x": {"value": 11.372677}, "pca2": {"value": 1.501910998267389}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.067919547633722}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.92338}, "country": {"value": "Union of the Comoros"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A3806G", "A20963G", "A25449T"]}}}, {"name": "COM/SS3803/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7712328767122, "confidence": [2021.7712328767122, 2021.7712328767122]}, "tsne_y": {"value": 5.81007127111878}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Union of the Comoros"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.912047399092535}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.597617872927053}, "tsne_x": {"value": 24.7787926259503}, "mds3": {"value": -28.93454757070251}, "umap_x": {"value": 11.5957365}, "pca2": {"value": 1.4798514380785963}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.8721277088248669}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.472476}, "country": {"value": "Union of the Comoros"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C826T", "T6402C", "T19220C", "G22335T"], "S": ["W258L"]}, "labels": {"aa": "S: W258L"}}}]}]}]}, {"name": "NODE_0000234", "node_attrs": {"div": 37, "num_date": {"value": 2021.465219392947, "confidence": [2021.2706280787054, 2021.5585129092765]}}, "branch_attrs": {"mutations": {"nuc": ["C5239T", "T5514C"]}}, "children": [{"name": "NODE_0001014", "node_attrs": {"div": 37, "num_date": {"value": 2021.5135149770203, "confidence": [2021.2514984499578, 2021.5621320856803]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-3-C11719/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6479452054793, 2021.6479452054793]}, "tsne_y": {"value": 5.642695584136704}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.833766504952075}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.5845836245138125}, "tsne_x": {"value": 24.073297323285228}, "mds3": {"value": -35.69793512349862}, "umap_x": {"value": 11.531981}, "pca2": {"value": -6.852437592023398}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -1.019329281013867}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.157088}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1376T", "C1437T", "T12383C", "T29302C"]}}}, {"name": "NODE_0001065", "node_attrs": {"div": 37, "num_date": {"value": 2021.554301583879, "confidence": [2021.5017462174515, 2021.5657534246575]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y21931/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5657534246575, "confidence": [2021.5657534246575, 2021.5657534246575]}, "tsne_y": {"value": 6.091850500931184}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.038427307803722}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.005942824369403}, "tsne_x": {"value": 24.48419249250191}, "mds3": {"value": -31.11954326981257}, "umap_x": {"value": 11.679427}, "pca2": {"value": -9.214748302831042}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.7689704941595213}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.319616}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "Japan/SZ-NIG-Y211144/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.5849315068492, "confidence": [2021.5849315068492, 2021.5849315068492]}, "tsne_y": {"value": 5.984650583835323}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.225936866448592}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.910984498999021}, "tsne_x": {"value": 24.3624366994918}, "mds3": {"value": -31.73777921566607}, "umap_x": {"value": 11.6620655}, "pca2": {"value": -6.366187137320842}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.7754028224318186}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -12.294418}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T7771C"]}}}]}]}, {"name": "NODE_0000237", "node_attrs": {"div": 39, "num_date": {"value": 2021.5061868469031, "confidence": [2021.4080351018822, 2021.5899560156668]}}, "branch_attrs": {"mutations": {"nuc": ["C5365T", "C28170T"]}}, "children": [{"name": "NODE_0001068", "node_attrs": {"div": 39, "num_date": {"value": 2021.5351799186071, "confidence": [2021.4057771031946, 2021.5874824551206]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-4-C3/2022", "node_attrs": {"div": 47, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 5.154586971892875}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.200645613943212}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.123469982254704}, "tsne_x": {"value": 23.48223325968785}, "mds3": {"value": -42.4176648683951}, "umap_x": {"value": 11.204834}, "pca2": {"value": -6.272202533503164}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 7.796965605653682}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.8518095}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C2509T", "T6634C", "C11986A", "A22803G", "G25552T", "C25701T", "G28541T", "C29144T"], "S": ["Q414R"]}, "labels": {"aa": "S: Q414R"}}}, {"name": "Japan/SZ-NIG-Y211617/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.6150684931506, "confidence": [2021.6150684931506, 2021.6150684931506]}, "tsne_y": {"value": 5.263934048051778}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.754711927055444}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.783352517004911}, "tsne_x": {"value": 23.587523355287534}, "mds3": {"value": -38.45326082067454}, "umap_x": {"value": 11.096626}, "pca2": {"value": -2.2993714766974827}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.049787546113829}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.502387}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C4784T", "C5893T", "G13385A", "A15436G", "C20032T", "T21379C"]}}}]}, {"name": "NODE_0001069", "node_attrs": {"div": 39, "num_date": {"value": 2021.5354520325784, "confidence": [2021.4476580828882, 2021.5907077609183]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y211858/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6424657534246, "confidence": [2021.6424657534246, 2021.6424657534246]}, "tsne_y": {"value": 5.419670487450053}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.14816531785162}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.735829910670893}, "tsne_x": {"value": 23.784605382016643}, "mds3": {"value": -35.9630264359478}, "umap_x": {"value": 11.566954}, "pca2": {"value": -1.8811393396494915}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.416179929523863}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.723972}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A6659G", "C9360T", "C26885T"]}}}, {"name": "NODE_0001071", "node_attrs": {"div": 39, "num_date": {"value": 2021.5512659657716, "confidence": [2021.4570674501654, 2021.5993002040082]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y211818/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6424657534246, "confidence": [2021.6424657534246, 2021.6424657534246]}, "tsne_y": {"value": 5.421667115235456}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.375863204213216}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.779998227606291}, "tsne_x": {"value": 23.774638527329667}, "mds3": {"value": -35.45315004212591}, "umap_x": {"value": 11.437802}, "pca2": {"value": -2.3056441348502923}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.1635747063991064}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.792685}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C697T", "G19096A", "C28344A"]}}}, {"name": "NODE_0001072", "node_attrs": {"div": 39, "num_date": {"value": 2021.5791217795224, "confidence": [2021.4610701612314, 2021.6125392113056]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y211614/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.623287671233, "confidence": [2021.623287671233, 2021.623287671233]}, "tsne_y": {"value": 5.581587409579425}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.04703393998782}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.398917808610119}, "tsne_x": {"value": 23.95954704541608}, "mds3": {"value": -33.9987451612781}, "umap_x": {"value": 11.521869}, "pca2": {"value": -9.985115326110078}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.8713252003432821}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.36414}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G24858A"], "S": ["G1099D"]}, "labels": {"aa": "S: G1099D"}}}, {"name": "JPN/JP_HiroFH195c/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7, "confidence": [2021.7, 2021.7]}, "tsne_y": {"value": 5.411372180630815}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.29"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Hiroshima"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.998395213564123}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -6.0263230094025335}, "tsne_x": {"value": 23.757831007423604}, "mds3": {"value": -35.53609344591298}, "umap_x": {"value": 11.312502}, "pca2": {"value": -9.500606119670389}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.421430107027401}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.060236}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C1627T", "C7390T", "G13240T", "-28271A"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0001073", "node_attrs": {"div": 35, "num_date": {"value": 2021.3280136222652, "confidence": [2021.0883129902509, 2021.5301369863014]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0618/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5301369863014, "confidence": [2021.5301369863014, 2021.5301369863014]}, "tsne_y": {"value": 5.896355790118825}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.617.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.674651880321938}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -3.331661087420124}, "tsne_x": {"value": 24.391769616853395}, "mds3": {"value": -35.64276639844146}, "umap_x": {"value": 11.356217}, "pca2": {"value": 0.4002318150277584}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": -0.2297720225383072}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.364375}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G410T", "T4149C", "G7273A", "A16775G", "A22005C", "G25855T"], "S": ["N148T"]}, "labels": {"aa": "S: N148T"}}}, {"name": "NODE_0000256", "node_attrs": {"div": 37, "num_date": {"value": 2021.464111744883, "confidence": [2021.1987932135778, 2021.5823534962808]}}, "branch_attrs": {"mutations": {"nuc": ["G21372T", "G27604A"]}}, "children": [{"name": "NODE_0001075", "node_attrs": {"div": 37, "num_date": {"value": 2021.4705148804694, "confidence": [2021.2066128747706, 2021.5941530346604]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-UPHL-210928750193/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.650684931507, "confidence": [2021.650684931507, 2021.650684931507]}, "tsne_y": {"value": 3.9530155741005286}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "AY.39"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Utah"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 9.773436634203572}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": 31.390478438315565}, "tsne_x": {"value": 25.629343976869844}, "mds3": {"value": -38.93271227819936}, "umap_x": {"value": 11.370696}, "pca2": {"value": -2.9418832910520987}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.153047305087573}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.818617}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G2231T", "G2946A", "G3304T", "G3433T", "C3634T", "C8655T", "T13929C"]}}}, {"name": "NODE_0001076", "node_attrs": {"div": 37, "num_date": {"value": 2021.5133738394206, "confidence": [2021.2077854597283, 2021.6064497092648]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Peru/PE-LMA-UW21112340735/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_y": {"value": 2.688380976079794}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.524669742424188}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -7.571834579490103}, "tsne_x": {"value": 25.16443864402404}, "mds3": {"value": -39.68340142266253}, "umap_x": {"value": 11.127385}, "pca2": {"value": 31.544360195841705}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 10.575751015514294}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.439079}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C815T", "G2164A", "G2494T", "G5716T", "C6883T", "T7258C", "C9693T", "G22028-", "-22034A", "G24781C", "C29420T"], "S": ["X156-", "X158R", "K1073N", "X1274*"]}, "labels": {"aa": "S: X156-, X158R, K1073N, X1274*"}}}, {"name": "USA/AZ-CDC-STM-YVUHPKGMR/2021", "node_attrs": {"div": 48, "num_date": {"value": 2021.886301369863, "confidence": [2021.886301369863, 2021.886301369863]}, "tsne_y": {"value": 3.054467902497477}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "B.1.617.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.5860443368162005}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -8.524545296563957}, "tsne_x": {"value": 23.896051761806163}, "mds3": {"value": -43.00254726696773}, "umap_x": {"value": 11.126337}, "pca2": {"value": -18.537323924126795}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 9.630133076294824}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.965206}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G101A", "A3559C", "G5206T", "C9979T", "C15654T", "A16998G", "C18395T", "C18457T", "C25000T", "G25135T", "G28077T"], "S": ["K1191N"]}, "labels": {"aa": "S: K1191N"}}}]}]}, {"name": "NODE_0000259", "node_attrs": {"div": 39, "num_date": {"value": 2021.5426970772064, "confidence": [2021.4807213721087, 2021.611601539042]}}, "branch_attrs": {"mutations": {"nuc": ["A13482G", "G19563T"]}}, "children": [{"name": "NZL/21MV0847/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6397260273973, "confidence": [2021.6397260273973, 2021.6397260273973]}, "tsne_y": {"value": 4.63373558355285}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.171093636077481}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.196433963603111}, "tsne_x": {"value": 24.731062311521324}, "mds3": {"value": -33.94211592166146}, "umap_x": {"value": 11.891369}, "pca2": {"value": 11.833798366313651}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.0395569577864172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.615259}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T7605C"]}}}, {"name": "NODE_0001029", "node_attrs": {"div": 39, "num_date": {"value": 2021.5645221162702, "confidence": [2021.4902277165156, 2021.6157812331385]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001033", "node_attrs": {"div": 39, "num_date": {"value": 2021.5792880173644, "confidence": [2021.49521300698, 2021.6254763208326]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000268", "node_attrs": {"div": 42, "num_date": {"value": 2021.7296161976635, "confidence": [2021.615660021323, 2021.7697925718833]}}, "branch_attrs": {"mutations": {"nuc": ["C1426T", "C7874T", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-", "G29554T"]}}, "children": [{"name": "NZL/21CV0954/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.7876712328766, "confidence": [2021.7876712328766, 2021.7876712328766]}, "tsne_y": {"value": 3.8943482232032736}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.803447063550201}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.075245129953396}, "tsne_x": {"value": 24.51148427088038}, "mds3": {"value": -37.8069120172436}, "umap_x": {"value": 11.867606}, "pca2": {"value": 12.62638391687295}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.2348194589603194}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.971467}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A21231G"]}}}, {"name": "NZL/21CV1089/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.795890410959, "confidence": [2021.795890410959, 2021.795890410959]}, "tsne_y": {"value": 3.5198147446276185}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.977347583150845}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.112211413288363}, "tsne_x": {"value": 24.57447020226243}, "mds3": {"value": -41.08802497308554}, "umap_x": {"value": 11.382624}, "pca2": {"value": 12.7937076787768}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.151172533054325}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.536332}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G16528T", "G25429C"]}}}]}, {"name": "NODE_0000274", "node_attrs": {"div": 40, "num_date": {"value": 2021.620497515284, "confidence": [2021.5846916234802, 2021.631506849315]}}, "branch_attrs": {"mutations": {"nuc": ["C11902T"]}}, "children": [{"name": "NZL/21MV1625/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7082191780821, "confidence": [2021.7082191780821, 2021.7082191780821]}, "tsne_y": {"value": 4.28914928998908}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.465821601082316}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.231651179143078}, "tsne_x": {"value": 24.61965371499304}, "mds3": {"value": -36.46625842462196}, "umap_x": {"value": 11.88545}, "pca2": {"value": 12.04133485080738}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.05816847604546}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.159687}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C18303T", "C29095T"]}}}, {"name": "NZL/21MV1443/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_y": {"value": 4.521249946235894}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.313153957784834}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.129356660837609}, "tsne_x": {"value": 24.744251904408543}, "mds3": {"value": -35.08439325062493}, "umap_x": {"value": 11.930938}, "pca2": {"value": 11.438106037383257}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.6485747739588366}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.37491}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV1482/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6671232876713, "confidence": [2021.6671232876713, 2021.6671232876713]}, "tsne_y": {"value": 4.230987689774074}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.402656866847591}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.232116684052742}, "tsne_x": {"value": 24.686035116168828}, "mds3": {"value": -37.36554645193264}, "umap_x": {"value": 11.965558}, "pca2": {"value": 12.041722210997465}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.4732042846144955}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.974343}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C9857T", "C24134T"], "S": ["L858F"]}, "labels": {"aa": "S: L858F"}}}, {"name": "NZL/21CV0375/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6616438356164, "confidence": [2021.6616438356164, 2021.6616438356164]}, "tsne_y": {"value": 4.4214457391571935}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.32060137549246}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.219379609480518}, "tsne_x": {"value": 24.68856013028599}, "mds3": {"value": -35.0838231136441}, "umap_x": {"value": 11.9754715}, "pca2": {"value": 12.044815319262284}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.866223351495249}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.390146}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G23126T"], "S": ["A522S"]}, "labels": {"aa": "S: A522S"}}}, {"name": "NZL/21CV0251/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.63698630137, "confidence": [2021.63698630137, 2021.63698630137]}, "tsne_y": {"value": 4.57530221320122}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.971288932397565}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.351815041003622}, "tsne_x": {"value": 24.704261355968583}, "mds3": {"value": -34.07073535896247}, "umap_x": {"value": 11.923796}, "pca2": {"value": 12.892762992448128}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.5148356382118302}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.610198}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0781/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.631506849315, "confidence": [2021.631506849315, 2021.631506849315]}, "tsne_y": {"value": 4.543719752808882}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.63944502640957}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.232022246634044}, "tsne_x": {"value": 24.72618400098061}, "mds3": {"value": -34.51609641094934}, "umap_x": {"value": 11.968341}, "pca2": {"value": 12.041186616078637}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.5555759243590737}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.442449}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001091", "node_attrs": {"div": 40, "num_date": {"value": 2021.6765995111514, "confidence": [2021.6301084029749, 2021.6780821917807]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1447/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6808219178083, "confidence": [2021.6808219178083, 2021.6808219178083]}, "tsne_y": {"value": 4.521965285980425}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.309013892865057}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.232022246634044}, "tsne_x": {"value": 24.742355969667}, "mds3": {"value": -35.0859324591395}, "umap_x": {"value": 11.932809}, "pca2": {"value": 12.041186616078637}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.642628793988444}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.336134}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV1412/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6780821917807, "confidence": [2021.6780821917807, 2021.6780821917807]}, "tsne_y": {"value": 4.538936467739701}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.919125657283375}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.305737922121126}, "tsne_x": {"value": 24.73085177817244}, "mds3": {"value": -34.72024897704393}, "umap_x": {"value": 11.920131}, "pca2": {"value": 12.55867282766157}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.598899181651092}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.437404}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001092", "node_attrs": {"div": 40, "num_date": {"value": 2021.63698630137, "confidence": [2021.616554148256, 2021.63698630137]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0831/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6397260273973, "confidence": [2021.6397260273973, 2021.6397260273973]}, "tsne_y": {"value": 4.585419627036954}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.483575879446065}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.129356660837609}, "tsne_x": {"value": 24.70964554411896}, "mds3": {"value": -33.97383683665795}, "umap_x": {"value": 11.926789}, "pca2": {"value": 11.438106037383257}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.3377296996977033}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.558678}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0245/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.63698630137, "confidence": [2021.63698630137, 2021.63698630137]}, "tsne_y": {"value": 4.508222753423014}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.533579412768361}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.524790497753359}, "tsne_x": {"value": 24.714267022347908}, "mds3": {"value": -35.213928691354546}, "umap_x": {"value": 11.897606}, "pca2": {"value": 13.373574767503662}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.9822462181317344}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.389926}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001093", "node_attrs": {"div": 40, "num_date": {"value": 2021.6498146175563, "confidence": [2021.619001354573, 2021.664383561644]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1278/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_y": {"value": 4.529704543746474}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.152432959281402}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.063421651671357}, "tsne_x": {"value": 24.740671470601}, "mds3": {"value": -34.85105962203769}, "umap_x": {"value": 11.942522}, "pca2": {"value": 11.080669479742912}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.6423512225980192}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.378656}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001095", "node_attrs": {"div": 40, "num_date": {"value": 2021.6753424657534, "confidence": [2021.6454349083015, 2021.6753424657534]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1582/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6972602739727, "confidence": [2021.6972602739727, 2021.6972602739727]}, "tsne_y": {"value": 4.574933402416681}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.050927552665484}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.28300700512744}, "tsne_x": {"value": 24.71090455714953}, "mds3": {"value": -34.09478409098318}, "umap_x": {"value": 11.966357}, "pca2": {"value": 12.37622412365196}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.5397655736823874}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.5753355}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV1368/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6753424657534, "confidence": [2021.6753424657534, 2021.6753424657534]}, "tsne_y": {"value": 4.547646532836866}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.459811788242261}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.232022246634044}, "tsne_x": {"value": 24.723256642681847}, "mds3": {"value": -34.37518609013336}, "umap_x": {"value": 11.966731}, "pca2": {"value": 12.041186616078637}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.6158801694366014}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.54495}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000283", "node_attrs": {"div": 42, "num_date": {"value": 2021.6479452054793, "confidence": [2021.63145934224, 2021.6479452054793]}}, "branch_attrs": {"mutations": {"nuc": ["G19872T", "G28628T"]}}, "children": [{"name": "NZL/21MV1006/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.6479452054793, "confidence": [2021.6479452054793, 2021.6479452054793]}, "tsne_y": {"value": 4.190484276086242}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.811854583509472}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.073948687558873}, "tsne_x": {"value": 24.60918763266744}, "mds3": {"value": -37.07068931531463}, "umap_x": {"value": 11.988122}, "pca2": {"value": 11.128080621275211}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.098430308480825}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.983077}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000284", "node_attrs": {"div": 44, "num_date": {"value": 2021.7872291445, "confidence": [2021.6928399902174, 2021.8205746773422]}}, "branch_attrs": {"mutations": {"nuc": ["C308A", "C3096T"]}}, "children": [{"name": "NZL/21CH0454/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8342465753424, "confidence": [2021.8342465753424, 2021.8342465753424]}, "tsne_y": {"value": 3.91324550349245}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.375167096648877}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.237656601009135}, "tsne_x": {"value": 24.39618306813681}, "mds3": {"value": -39.54907828023491}, "umap_x": {"value": 11.449041}, "pca2": {"value": 12.052577082015995}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.552538558071161}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.781896}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV2139/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.83698630137, "confidence": [2021.83698630137, 2021.83698630137]}, "tsne_y": {"value": 3.672732139568368}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.81317058743928}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.237195393705048}, "tsne_x": {"value": 24.259571139078883}, "mds3": {"value": -41.93785403881871}, "umap_x": {"value": 11.319292}, "pca2": {"value": 12.052919667717084}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.854503253386686}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.361023}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C14599T", "C17977T"]}}}]}]}]}]}, {"name": "NODE_0001048", "node_attrs": {"div": 39, "num_date": {"value": 2021.5826451596818, "confidence": [2021.475707499531, 2021.634921982822]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001080", "node_attrs": {"div": 39, "num_date": {"value": 2021.611305132029, "confidence": [2021.571807832379, 2021.6441566521996]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1177/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.6561643835616, "confidence": [2021.6561643835616, 2021.6561643835616]}, "tsne_y": {"value": 4.834941479286448}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.86036925915323}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.2302814029467495}, "tsne_x": {"value": 24.720994054754254}, "mds3": {"value": -32.97441881062445}, "umap_x": {"value": 11.862692}, "pca2": {"value": 12.038973762585002}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.9216466085638308}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.749679}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001081", "node_attrs": {"div": 39, "num_date": {"value": 2021.634575359067, "confidence": [2021.5959063857051, 2021.6496935195903]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0389/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_y": {"value": 4.8588780852434805}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.99423864577059}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.555954836258918}, "tsne_x": {"value": 24.687974360991262}, "mds3": {"value": -32.92257628123915}, "umap_x": {"value": 11.817796}, "pca2": {"value": 13.192578981687689}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.2106792156829915}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.792197}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001082", "node_attrs": {"div": 39, "num_date": {"value": 2021.641699104682, "confidence": [2021.606067197021, 2021.6594666795902]}}, "branch_attrs": {"mutations": {"nuc": ["T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-"]}}, "children": [{"name": "NZL/21MV1725/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.7328767123288, "confidence": [2021.7328767123288, 2021.7328767123288]}, "tsne_y": {"value": 4.3760616158256935}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.247143164861432}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.302949528338501}, "tsne_x": {"value": 24.80139927019275}, "mds3": {"value": -35.25704745558284}, "umap_x": {"value": 11.974608}, "pca2": {"value": 14.481094515961878}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.0195874484294785}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.333115}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C8247T"]}}}, {"name": "NODE_0001083", "node_attrs": {"div": 39, "num_date": {"value": 2021.650806486662, "confidence": [2021.6130251817265, 2021.6609878594788]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001084", "node_attrs": {"div": 39, "num_date": {"value": 2021.6611182185186, "confidence": [2021.616569979555, 2021.664383561644]}}, "branch_attrs": {"mutations": {"nuc": ["-27694T", "-27695T", "-27696T", "-27697C", "-27698T", "-27699T", "-27700A", "-27701T", "-27702T", "-27703G"]}}, "children": [{"name": "NZL/21CV0413/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.664383561644, "confidence": [2021.664383561644, 2021.664383561644]}, "tsne_y": {"value": 4.813658788583795}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.239243127403432}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.231422616924822}, "tsne_x": {"value": 24.729530703713746}, "mds3": {"value": -33.12894552480835}, "umap_x": {"value": 11.877549}, "pca2": {"value": 12.038665614852196}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.1212128212261965}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.757818}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV1545/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.6917808219177, "confidence": [2021.6917808219177, 2021.6917808219177]}, "tsne_y": {"value": 4.65119486632172}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.0135735644275625}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.148783954266779}, "tsne_x": {"value": 24.75215890804884}, "mds3": {"value": -33.847923498267605}, "umap_x": {"value": 11.872263}, "pca2": {"value": 11.816880336050565}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 0.9779098352115952}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.636392}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G22468T"]}}}]}, {"name": "NODE_0001085", "node_attrs": {"div": 39, "num_date": {"value": 2021.6611378253358, "confidence": [2021.612415107753, 2021.708977436962]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000270", "node_attrs": {"div": 41, "num_date": {"value": 2021.8260273972603, "confidence": [2021.7680005785928, 2021.8260273972603]}}, "branch_attrs": {"mutations": {"nuc": ["G15906T", "A16668G"]}}, "children": [{"name": "NZL/21CH0420/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8260273972603, "confidence": [2021.8260273972603, 2021.8260273972603]}, "tsne_y": {"value": 4.323715132390868}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.008884571138104}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.915120899228155}, "tsne_x": {"value": 24.766234934388528}, "mds3": {"value": -35.23184192363833}, "umap_x": {"value": 11.962925}, "pca2": {"value": 11.499339455996}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 1.837890748917022}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.33624}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV3363/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8616438356164, "confidence": [2021.8616438356164, 2021.8616438356164]}, "tsne_y": {"value": 4.169769403543396}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.704152889165638}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.983815229477761}, "tsne_x": {"value": 24.81986145245417}, "mds3": {"value": -36.53800162186004}, "umap_x": {"value": 12.013063}, "pca2": {"value": 11.893648578275837}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.5531733488218955}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.07169}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0000271", "node_attrs": {"div": 42, "num_date": {"value": 2021.7869994768148, "confidence": [2021.7073269970554, 2021.809589041096]}}, "branch_attrs": {"mutations": {"nuc": ["C19454T", "G22218A", "C29281T"], "S": ["G219D"]}, "labels": {"aa": "S: G219D"}}, "children": [{"name": "NZL/21MV2503/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.809589041096, "confidence": [2021.809589041096, 2021.809589041096]}, "tsne_y": {"value": 3.975582472321363}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.97806299857398}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.062043391762102}, "tsne_x": {"value": 25.052881037229724}, "mds3": {"value": -38.122027852570646}, "umap_x": {"value": 11.919686}, "pca2": {"value": 12.610987233910082}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.9575999723237048}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.844822}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001089", "node_attrs": {"div": 42, "num_date": {"value": 2021.7982795331288, "confidence": [2021.7103774885293, 2021.8377197879045]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV3349/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_y": {"value": 3.527147596031253}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.772871752844039}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.030803250968198}, "tsne_x": {"value": 25.25656364263931}, "mds3": {"value": -41.2731884875582}, "umap_x": {"value": 11.364135}, "pca2": {"value": 12.438740209734558}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.039313625639235}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.515409}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C9180T", "C21156T", "G29440T"]}}}, {"name": "NZL/21MV3237/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.8753424657534, "confidence": [2021.8753424657534, 2021.8753424657534]}, "tsne_y": {"value": 3.534971467235228}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.892591483498936}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.987249607258724}, "tsne_x": {"value": 25.260170429220043}, "mds3": {"value": -41.11296672885809}, "umap_x": {"value": 11.348522}, "pca2": {"value": 12.098828648544076}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.132078574032218}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.605722}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A3423G", "C14913T", "C24198T"], "S": ["A879V"]}, "labels": {"aa": "S: A879V"}}}]}]}]}]}]}]}]}, {"name": "NODE_0001058", "node_attrs": {"div": 39, "num_date": {"value": 2021.6037508099903, "confidence": [2021.476250564891, 2021.6530783775968]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1460/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.6835616438357, "confidence": [2021.6835616438357, 2021.6835616438357]}, "tsne_y": {"value": 4.3764232879719325}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.034954489540535}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.197148112648223}, "tsne_x": {"value": 24.774281129038737}, "mds3": {"value": -35.85892414019125}, "umap_x": {"value": 11.97859}, "pca2": {"value": 11.831647100653722}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.140835831477247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.177026}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C6606T", "C21597T"], "S": ["S12F"]}, "labels": {"aa": "S: S12F"}}}, {"name": "NODE_0000289", "node_attrs": {"div": 41, "num_date": {"value": 2021.6615276835469, "confidence": [2021.6206049306322, 2021.7191780821918]}}, "branch_attrs": {"mutations": {"nuc": ["C9165T", "T18231C", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-"]}}, "children": [{"name": "NZL/21MV2532/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.8150684931506, "confidence": [2021.8150684931506, 2021.8150684931506]}, "tsne_y": {"value": 3.870578380035661}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.417780468195565}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.916502027474945}, "tsne_x": {"value": 24.835100159180023}, "mds3": {"value": -37.1505046302762}, "umap_x": {"value": 11.986123}, "pca2": {"value": 11.500711206497831}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.4144347511545337}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.076043}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["A11770G"]}}}, {"name": "NZL/21MV1835/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.7520547945205, "confidence": [2021.7520547945205, 2021.7520547945205]}, "tsne_y": {"value": 3.833855956729793}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.370126810184836}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.018801793361353}, "tsne_x": {"value": 24.838801237070232}, "mds3": {"value": -37.97071566355039}, "umap_x": {"value": 11.974823}, "pca2": {"value": 12.103001704655844}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.2987858667772163}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.940009}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G12328A"]}}}, {"name": "NZL/21CV0557/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7191780821918, "confidence": [2021.7191780821918, 2021.7191780821918]}, "tsne_y": {"value": 3.9998112134036017}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.118715315517962}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.093590433744905}, "tsne_x": {"value": 24.82447521458305}, "mds3": {"value": -36.60728143094889}, "umap_x": {"value": 11.974939}, "pca2": {"value": 12.616828956504564}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.7306296819134115}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.121292}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001099", "node_attrs": {"div": 41, "num_date": {"value": 2021.6880955261731, "confidence": [2021.616894741937, 2021.7404130883306]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3031/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_y": {"value": 3.2230843539674474}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.142496905992362}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.090938294538815}, "tsne_x": {"value": 24.88740381919534}, "mds3": {"value": -44.556800132091006}, "umap_x": {"value": 11.191142}, "pca2": {"value": 12.629056279055966}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.51149537814112}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -8.910806}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G204C", "G8939T", "A10829G", "G15372T", "G28936T", "C29364T"]}}}, {"name": "NODE_0001100", "node_attrs": {"div": 41, "num_date": {"value": 2021.7214152960005, "confidence": [2021.6151136269227, 2021.7537847713895]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV2249/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8342465753424, "confidence": [2021.8342465753424, 2021.8342465753424]}, "tsne_y": {"value": 3.5781496357582467}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.888843744831668}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.019237825232259}, "tsne_x": {"value": 24.864642075114894}, "mds3": {"value": -40.14706443354382}, "umap_x": {"value": 11.409867}, "pca2": {"value": 12.105711904524618}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.5719234088091705}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.673227}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C486T", "C12663T", "G24933T"], "S": ["G1124V"]}, "labels": {"aa": "S: G1124V"}}}, {"name": "NZL/21MV2065/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.768493150685, "confidence": [2021.768493150685, 2021.768493150685]}, "tsne_y": {"value": 3.954318559304916}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.870281328465697}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.097366253186833}, "tsne_x": {"value": 24.82307834343371}, "mds3": {"value": -36.40176093333712}, "umap_x": {"value": 11.931959}, "pca2": {"value": 12.623919939994432}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.9655148650767167}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.202961}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G5049A"]}}}]}]}, {"name": "NODE_0001102", "node_attrs": {"div": 41, "num_date": {"value": 2021.686216049571, "confidence": [2021.6072548414454, 2021.7421210127543]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001103", "node_attrs": {"div": 41, "num_date": {"value": 2021.7215271673822, "confidence": [2021.6832849859888, 2021.7435695614558]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1851/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7520547945205, "confidence": [2021.7520547945205, 2021.7520547945205]}, "tsne_y": {"value": 4.068721499516703}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.298111703994208}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.984970194067579}, "tsne_x": {"value": 24.81231410047086}, "mds3": {"value": -35.64713243957252}, "umap_x": {"value": 11.929387}, "pca2": {"value": 11.894596586187024}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.7507288626095567}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.302364}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001104", "node_attrs": {"div": 41, "num_date": {"value": 2021.744820099071, "confidence": [2021.7094538666047, 2021.7465753424658]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV1803/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7465753424658, "confidence": [2021.7465753424658, 2021.7465753424658]}, "tsne_y": {"value": 4.111129281699345}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.261179214106978}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.024219929109022}, "tsne_x": {"value": 24.80518653530849}, "mds3": {"value": -35.630264064011385}, "umap_x": {"value": 11.924815}, "pca2": {"value": 12.099053076551805}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.7199504127782625}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.229556}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["-27694T", "-27695T", "-27696T", "T27704-", "T27705-"]}}}, {"name": "NODE_0000297", "node_attrs": {"div": 42, "num_date": {"value": 2021.8090932614996, "confidence": [2021.7585578452981, 2021.809589041096]}}, "branch_attrs": {"mutations": {"nuc": ["A14224G"]}}, "children": [{"name": "NZL/21CH0321/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.809589041096, "confidence": [2021.809589041096, 2021.809589041096]}, "tsne_y": {"value": 3.945406762315773}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.84721671450799}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.019069630755459}, "tsne_x": {"value": 24.817060791686004}, "mds3": {"value": -36.39001491689484}, "umap_x": {"value": 11.893646}, "pca2": {"value": 12.103824747134937}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.7272336376009614}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.146214}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV2955/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8561643835617, "confidence": [2021.8561643835617, 2021.8561643835617]}, "tsne_y": {"value": 3.672753862904592}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.522469194980365}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.015425872455626}, "tsne_x": {"value": 24.857381615519884}, "mds3": {"value": -39.60718380602807}, "umap_x": {"value": 11.45537}, "pca2": {"value": 12.105587324742542}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.721028509251869}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.85191}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C7935T"]}}}]}]}]}, {"name": "NODE_0001106", "node_attrs": {"div": 41, "num_date": {"value": 2021.7100653708612, "confidence": [2021.6002350204308, 2021.7748021206255]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001107", "node_attrs": {"div": 41, "num_date": {"value": 2021.743668777915, "confidence": [2021.6005628884752, 2021.7793558793235]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0655/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.8643835616438, "confidence": [2021.8643835616438, 2021.8643835616438]}, "tsne_y": {"value": 3.543553483431832}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.42632296819981}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.983049041397422}, "tsne_x": {"value": 24.872245468852054}, "mds3": {"value": -41.10386328166648}, "umap_x": {"value": 11.375888}, "pca2": {"value": 11.902263361201657}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.087164265844105}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.551452}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C5884T", "A16064T", "G29392T"]}}}, {"name": "NODE_0001108", "node_attrs": {"div": 41, "num_date": {"value": 2021.7817405103585, "confidence": [2021.7422195076942, 2021.782191780822]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0204/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.782191780822, "confidence": [2021.782191780822, 2021.782191780822]}, "tsne_y": {"value": 3.973037748453312}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.316593012726456}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -2.73560527918025}, "tsne_x": {"value": 24.83387532870623}, "mds3": {"value": -36.655161854640525}, "umap_x": {"value": 11.9998}, "pca2": {"value": 1.3906566521636765}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.4080047300147225}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.006506}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV2384/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.7986301369863, "confidence": [2021.7986301369863, 2021.7986301369863]}, "tsne_y": {"value": 3.9491895893435407}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.679433289539505}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.984970194067579}, "tsne_x": {"value": 24.83359920675367}, "mds3": {"value": -37.43382355792535}, "umap_x": {"value": 12.013759}, "pca2": {"value": 11.894596586187024}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.8381732414149234}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.002553}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001111", "node_attrs": {"div": 41, "num_date": {"value": 2021.7363751720202, "confidence": [2021.5993170379395, 2021.8169119090812]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000303", "node_attrs": {"div": 42, "num_date": {"value": 2021.853358660096, "confidence": [2021.778658010492, 2021.890280867705]}}, "branch_attrs": {"mutations": {"nuc": ["A14457G"]}}, "children": [{"name": "NZL/21MV3346/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_y": {"value": 3.775758709118421}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.719325434578882}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.916283928561541}, "tsne_x": {"value": 24.84415333041817}, "mds3": {"value": -37.777059238498914}, "umap_x": {"value": 11.857417}, "pca2": {"value": 11.50027760513662}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 3.671803492334561}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.952675}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["T10003C"]}}}, {"name": "NZL/21MV3377/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.9164383561645, "confidence": [2021.9164383561645, 2021.9164383561645]}, "tsne_y": {"value": 3.927769111726498}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.179525689425945}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.916313222694846}, "tsne_x": {"value": 24.82272634015118}, "mds3": {"value": -36.5371161319374}, "umap_x": {"value": 11.950374}, "pca2": {"value": 11.500388340628335}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.9864188240710066}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.151157}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001115", "node_attrs": {"div": 41, "num_date": {"value": 2021.7516483042878, "confidence": [2021.604004114895, 2021.822369769859]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV2695/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.831506849315, "confidence": [2021.831506849315, 2021.831506849315]}, "tsne_y": {"value": 3.745793477459769}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.74576379112262}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.019644640464295}, "tsne_x": {"value": 24.85682792306469}, "mds3": {"value": -37.96717655959832}, "umap_x": {"value": 11.93518}, "pca2": {"value": 12.104375334459872}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 4.281126802345081}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -10.975528}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G13822A", "G27008T"]}}}, {"name": "NODE_0001116", "node_attrs": {"div": 41, "num_date": {"value": 2021.7763462338066, "confidence": [2021.6034846215118, 2021.8257944071024]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0830/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.9027397260274, "confidence": [2021.9027397260274, 2021.9027397260274]}, "tsne_y": {"value": 3.43880480795635}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.750891023393566}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -4.916022818385018}, "tsne_x": {"value": 24.879551601234848}, "mds3": {"value": -41.96654081218981}, "umap_x": {"value": 11.3335905}, "pca2": {"value": 11.5060615384923}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 5.09079103198347}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -9.45102}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["G11516A", "G27240T", "G27390T", "C28391T"]}}}, {"name": "NODE_0001118", "node_attrs": {"div": 41, "num_date": {"value": 2021.8066299962109, "confidence": [2021.7202513265338, 2021.8385359210736]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3297/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.8835616438357, "confidence": [2021.8835616438357, 2021.8835616438357]}, "tsne_y": {"value": 4.105936247421512}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.91614552395463}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.018820250372919}, "tsne_x": {"value": 24.80802301604101}, "mds3": {"value": -35.48920583538428}, "umap_x": {"value": 11.968674}, "pca2": {"value": 12.103796019991622}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.5261553999424087}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.271491}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV2179/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.8397260273973, "confidence": [2021.8397260273973, 2021.8397260273973]}, "tsne_y": {"value": 3.957872627176275}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AY.39.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "12"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango_collapsed": {"value": "AY.39.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.742373380709377}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "3"}, "pca1": {"value": -5.01899114432606}, "tsne_x": {"value": 24.818410049153435}, "mds3": {"value": -36.37682648126314}, "umap_x": {"value": 11.947237}, "pca2": {"value": 12.103554779263566}, "Nextstrain_clade": {"value": "21J (Delta)"}, "t-sne_label_for_Nextstrain_clade": {"value": "9"}, "mds2": {"value": 2.6393513191354288}, "umap_label_for_Nextclade_pango_collapsed": {"value": "1"}, "umap_y": {"value": -11.242846}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "3"}}, "branch_attrs": {"mutations": {"nuc": ["C15933T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000907", "node_attrs": {"div": 5, "num_date": {"value": 2020.0659694200133, "confidence": [2020.0121152517395, 2020.1497616594907]}}, "branch_attrs": {"mutations": {"nuc": ["G28881A"]}}, "children": [{"name": "KEN/C67249/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8237704918033, "confidence": [2020.8237704918033, 2020.8237704918033]}, "tsne_y": {"value": -9.72506786723669}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.33695858638407}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -2.735150235960754}, "tsne_x": {"value": -9.740537549375444}, "mds3": {"value": 2.450795838760979}, "umap_x": {"value": 7.70947}, "pca2": {"value": 2.970193836796616}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 12.047585679645715}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.04241}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1377T", "A1381G", "C6429T", "G9190T", "C12919T", "A14847G", "G23236T", "C23248T", "G26763T", "T27374A", "C29065T"], "S": ["K558N"]}, "labels": {"aa": "S: K558N"}}}, {"name": "NODE_0000908", "node_attrs": {"div": 7, "num_date": {"value": 2020.1558414470135, "confidence": [2020.1304962368808, 2020.1571038251366]}}, "branch_attrs": {"mutations": {"nuc": ["G28882A", "G28883C"]}}, "children": [{"name": "ITA/INMI4/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.1598360655737, "confidence": [2020.1598360655737, 2020.1598360655737]}, "tsne_y": {"value": -8.505233399797067}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Lazio"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.0840725980464168}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -4.918734830648185}, "tsne_x": {"value": -12.839384658044358}, "mds3": {"value": 4.983316341531976}, "umap_x": {"value": 12.40532}, "pca2": {"value": 4.9193386224974205}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0215600550152681}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.659237}, "country": {"value": "Italy"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NGA/CV-1/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.1571038251366, "confidence": [2020.1571038251366, 2020.1571038251366]}, "tsne_y": {"value": -8.497768322462216}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.292694937840907}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -2.7464564305847}, "tsne_x": {"value": -12.859944770008465}, "mds3": {"value": 5.469034694754064}, "umap_x": {"value": 12.376498}, "pca2": {"value": 6.095436111772693}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0710769266952969}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.612469}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G957A"]}}}, {"name": "NODE_0001122", "node_attrs": {"div": 7, "num_date": {"value": 2020.1851484350086, "confidence": [2020.1605354676872, 2020.25]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0084/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -8.497244841468216}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.3193311102377811}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -4.955176595818926}, "tsne_x": {"value": -12.83932143434992}, "mds3": {"value": 5.145008650712321}, "umap_x": {"value": 12.394251}, "pca2": {"value": -5.7644139326632855}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0596204244364955}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.63377}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/TG280883/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3128415300546, "confidence": [2020.3128415300546, 2020.3128415300546]}, "tsne_y": {"value": -8.912370703462042}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 1.1417885135472197}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 29.368389841251584}, "tsne_x": {"value": -12.72768836604254}, "mds3": {"value": 6.614757815154157}, "umap_x": {"value": 12.244382}, "pca2": {"value": -6.994763894337281}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0460102618791628}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.881728}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C6026T", "A12410G", "C13431T", "T18231C"]}}}]}, {"name": "NODE_0001077", "node_attrs": {"div": 7, "num_date": {"value": 2020.15636053549, "confidence": [2020.1373570984708, 2020.1728035440997]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/Peru-10/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.1898907103825, "confidence": [2020.1898907103825, 2020.1898907103825]}, "tsne_y": {"value": -8.449764186938694}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.8958626251589002}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -7.245550031954399}, "tsne_x": {"value": -12.88665239951771}, "mds3": {"value": 5.170332230004669}, "umap_x": {"value": 12.356523}, "pca2": {"value": -11.460829928872116}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1450089337541194}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.48817}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["A8945G", "T24022C"]}}}, {"name": "NODE_0000968", "node_attrs": {"div": 9, "num_date": {"value": 2020.2003966382977, "confidence": [2020.1809988276977, 2020.2165363351955]}}, "branch_attrs": {"mutations": {"nuc": ["C19170T", "G19509A"]}}, "children": [{"name": "KAZ/NCB-3/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.217213114754, "confidence": [2020.217213114754, 2020.217213114754]}, "tsne_y": {"value": -8.815619777099187}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.10"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kazakhstan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.3101328377080237}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.21686711732844}, "tsne_x": {"value": -12.826581377856291}, "mds3": {"value": 5.447876518766617}, "umap_x": {"value": 12.305291}, "pca2": {"value": -19.174006765329807}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0798823252131421}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.094425}, "country": {"value": "Kazakhstan"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["A18956G"]}}}, {"name": "NODE_0001126", "node_attrs": {"div": 9, "num_date": {"value": 2020.328760768326, "confidence": [2020.084445784601, 2020.3913814283496]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/CV317/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.5068306010928, "confidence": [2020.5068306010928, 2020.5068306010928]}, "tsne_y": {"value": -9.225846212111923}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.10"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.002671934564822}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9878522338149898}, "tsne_x": {"value": -12.736951594043658}, "mds3": {"value": 9.51361214519249}, "umap_x": {"value": 11.886319}, "pca2": {"value": -4.459122365496699}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.944557979960929}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.204648}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6877T", "G23587C", "G28090-", "T28091-", "T28092-", "C28093-", "T28094-", "A28095-", "T29568C"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}, {"name": "NGA/CV529/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6789617486338, "confidence": [2020.6789617486338, 2020.6789617486338]}, "tsne_y": {"value": -9.88644618114856}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.10"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.5919594754120263}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.34775632682012}, "tsne_x": {"value": -12.42425436098786}, "mds3": {"value": 16.199525730758047}, "umap_x": {"value": 10.721485}, "pca2": {"value": -17.171649173729996}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.244856794487992}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.989462}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4158T", "T11485C", "G14622T", "C19269T", "G23900C", "A25026T", "A26927G", "A28656G"], "S": ["E780Q", "Y1155F"]}, "labels": {"aa": "S: E780Q, Y1155F"}}}]}]}]}, {"name": "NODE_0001148", "node_attrs": {"div": 7, "num_date": {"value": 2020.1609512212901, "confidence": [2020.1372445503137, 2020.1769910560372]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001146", "node_attrs": {"div": 10, "num_date": {"value": 2020.2077700892987, "confidence": [2020.1828478648022, 2020.2208741521943]}}, "branch_attrs": {"mutations": {"nuc": ["C4002T", "G10097A", "C23731T"]}}, "children": [{"name": "CHL/Curacavi-PUC_MVL_0340/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.3592896174864, "confidence": [2020.3592896174864, 2020.3592896174864]}, "tsne_y": {"value": -6.586825257841605}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.26"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.7388735726190514}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -5.998701810048466}, "tsne_x": {"value": -12.617068375619075}, "mds3": {"value": 13.292563195526746}, "umap_x": {"value": 11.133139}, "pca2": {"value": 11.971682323000122}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.9576883999650486}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.463984}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["C6638T", "T8278C", "G12661A", "G13763T", "A14517G"]}}}, {"name": "NODE_0001147", "node_attrs": {"div": 11, "num_date": {"value": 2020.23087431694, "confidence": [2020.2130082232895, 2020.23087431694]}}, "branch_attrs": {"mutations": {"nuc": ["C13536T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0060/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.23087431694, "confidence": [2020.23087431694, 2020.23087431694]}, "tsne_y": {"value": -6.409932456380765}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.958958257268592}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -2.1106341748368056}, "tsne_x": {"value": -12.566611225240289}, "mds3": {"value": 5.735029259496969}, "umap_x": {"value": 12.246024}, "pca2": {"value": -4.176483388763327}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.4460480638407397}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.918256}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001155", "node_attrs": {"div": 11, "num_date": {"value": 2020.236640000167, "confidence": [2020.2247465784183, 2020.43173168815]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper011/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.5068306010928, "confidence": [2020.5068306010928, 2020.5068306010928]}, "tsne_y": {"value": -6.061565317391995}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.13"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.06383776968891}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.812996281018363}, "tsne_x": {"value": -12.553660954944254}, "mds3": {"value": 6.266456495163252}, "umap_x": {"value": 10.877578}, "pca2": {"value": 30.96136941716234}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 6.177172139514868}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.164963}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3768T", "C14265T", "G17721T", "A21131G", "C27213T", "C27513T", "C29675-"]}}}, {"name": "NODE_0001159", "node_attrs": {"div": 12, "num_date": {"value": 2020.411070464696, "confidence": [2020.2696133240509, 2020.5267738333034]}}, "branch_attrs": {"mutations": {"nuc": ["C12488T"]}}, "children": [{"name": "PER/un-CDC-4033329-001/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_y": {"value": -6.3961815944896445}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.630553006333605}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.267671580122453}, "tsne_x": {"value": -12.32149555885382}, "mds3": {"value": 12.5054517568859}, "umap_x": {"value": 10.997786}, "pca2": {"value": -2.85501349564327}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 5.185941426313925}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.302472}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1960T", "T3682C", "C12970T", "C17676T", "C23854T", "G29254T"]}}}, {"name": "PER/un-CDC-3958043-001/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6352459016393, "confidence": [2020.6352459016393, 2020.6352459016393]}, "tsne_y": {"value": -6.082578589241873}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.251665059529917}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.441215180489818}, "tsne_x": {"value": -12.355875843732209}, "mds3": {"value": 15.678261160383853}, "umap_x": {"value": 10.640073}, "pca2": {"value": -3.204786193133942}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.119626060208159}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.975393}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T209C", "C292T", "T3343C", "C5849A", "G21468T", "C26082T"]}}}]}]}, {"name": "NODE_0001087", "node_attrs": {"div": 11, "num_date": {"value": 2020.3263769740174, "confidence": [2020.1110907013676, 2020.4821030910123]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001152", "node_attrs": {"div": 13, "num_date": {"value": 2020.4615952299123, "confidence": [2020.1811505788462, 2020.672621106972]}}, "branch_attrs": {"mutations": {"nuc": ["G23593T", "G28908T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}, "children": [{"name": "EGY/CUNCI-HGC12I048/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0232876712328, "confidence": [2021.0232876712328, 2021.0232876712328]}, "tsne_y": {"value": -6.141156147689974}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.36"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.56225668817438}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.781579536813583}, "tsne_x": {"value": -12.103355757083754}, "mds3": {"value": 16.84160153834206}, "umap_x": {"value": 9.601389}, "pca2": {"value": -1.7268218039861385}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 12.901716330781008}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.856352}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1606C", "G3431T", "T8278C", "C9808T", "A10323G", "C10833T", "A19100G", "G23821A", "G25598C", "C28473T"]}}}, {"name": "NODE_0001153", "node_attrs": {"div": 31, "num_date": {"value": 2021.0535911862544, "confidence": [2020.8808995713289, 2021.167691832626]}}, "branch_attrs": {"mutations": {"nuc": ["G515-", "T516-", "T517-", "A518-", "G569A", "C2841T", "G5180A", "C7124T", "G9203A", "G9929A", "C11325T", "T11337C", "C12534T", "G16549T", "C17766T", "C21597T", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "T22016A", "A22600C", "T22917G", "G24257T", "T26767C", "G27882T", "A28271-"], "S": ["S12F", "I68X", "H69-", "V70X", "W152R", "R346S", "L452R", "A899S", "*1274X"]}, "labels": {"aa": "S: S12F, I68X, H69-, V70X, W152R, R346S, L452R, A899S, *1274X"}}, "children": [{"name": "NZL/21MV0507/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4424657534246, "confidence": [2021.4424657534246, 2021.4424657534246]}, "tsne_y": {"value": -4.568590356896377}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.36.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 40.97103021005205}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.5652890267667043}, "tsne_x": {"value": -11.51870245719853}, "mds3": {"value": 5.732851156515113}, "umap_x": {"value": 8.759876}, "pca2": {"value": 0.1269679041236591}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 7.63994932361316}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.382345}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G510-", "T511-", "C512-", "A513-", "T514-", "C3784T", "C11173T", "C15026T", "C21859T", "T24943C", "G25647T", "A26319G"]}}}, {"name": "NODE_0001154", "node_attrs": {"div": 32, "num_date": {"value": 2021.067476910487, "confidence": [2020.9375607816048, 2021.1948998046098]}}, "branch_attrs": {"mutations": {"nuc": ["C29632T"]}}, "children": [{"name": "NZL/21MV0265/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_y": {"value": -4.577964693965218}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "C.36.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -30.382885810468824}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 44.5567254163539}, "tsne_x": {"value": -11.526076912888772}, "mds3": {"value": -3.644723749918856}, "umap_x": {"value": 8.796855}, "pca2": {"value": -0.215877404208488}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 26.04316090195092}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.471762}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T519-", "G520-", "C17288T", "C21635T", "C27297T", "C29774T"], "S": ["P25S"]}, "labels": {"aa": "S: P25S"}}}, {"name": "Switzerland/GE-HUG-34118022/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.3520547945207, "confidence": [2021.3520547945207, 2021.3520547945207]}, "tsne_y": {"value": -4.55519159466909}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.36.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Geneva"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -46.1627798197631}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.995889049257664}, "tsne_x": {"value": -11.511027421466608}, "mds3": {"value": -3.9866535042573465}, "umap_x": {"value": 8.668623}, "pca2": {"value": -6.498362611906712}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 27.170967073015355}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.232998}, "country": {"value": "Switzerland"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["-515G", "-516T", "-517T", "-518A", "C527T", "C1063T", "G1265A", "C3653T", "C4582T", "T8806C", "C13487T", "T15474C", "G16588T", "C18189T", "G19455A", "A23092T", "C24374T", "C29686T"], "S": ["L938F"]}, "labels": {"aa": "S: L938F"}}}]}]}]}, {"name": "NODE_0001160", "node_attrs": {"div": 11, "num_date": {"value": 2020.3644125610351, "confidence": [2020.2497824909412, 2020.4863889669955]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DJI/NAMRU3_E106/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5642076502731, "confidence": [2020.5642076502731, 2020.5642076502731]}, "tsne_y": {"value": -6.230111033588787}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Djibouti"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.771399310655205}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -3.81782131269885}, "tsne_x": {"value": -12.510205233224449}, "mds3": {"value": 14.43407642325142}, "umap_x": {"value": 10.976032}, "pca2": {"value": -0.2102269135937243}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.4973944732700235}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.261154}, "country": {"value": "Djibouti"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["T12724C", "C18693T", "G19816T", "G25565T", "C28957T"]}}}, {"name": "NODE_0001161", "node_attrs": {"div": 11, "num_date": {"value": 2020.3857355478608, "confidence": [2020.2612020236952, 2020.4929068013846]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001165", "node_attrs": {"div": 11, "num_date": {"value": 2020.429037331003, "confidence": [2020.2636546848794, 2020.4977231608848]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001162", "node_attrs": {"div": 12, "num_date": {"value": 2020.4818877977589, "confidence": [2020.3886875123333, 2020.5068306010928]}}, "branch_attrs": {"mutations": {"nuc": ["C6196T"]}}, "children": [{"name": "Peru/UW20112760093/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.905737704918, "confidence": [2020.905737704918, 2020.905737704918]}, "tsne_y": {"value": -6.002740832790548}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.694028306887253}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.050141112521228}, "tsne_x": {"value": -12.679340369683256}, "mds3": {"value": 9.05410796534429}, "umap_x": {"value": 10.279041}, "pca2": {"value": 30.436326407587227}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 6.446180129666701}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.457683}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6636T", "C7101T", "C8016T", "T15492C", "C17876T", "C25889T", "C27208T", "C29722T"]}}}, {"name": "PER/covper014/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5068306010928, "confidence": [2020.5068306010928, 2020.5068306010928]}, "tsne_y": {"value": -6.227612123222929}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.4541324325399465}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -7.822718923622164}, "tsne_x": {"value": -12.568469268604796}, "mds3": {"value": 6.0630873516084005}, "umap_x": {"value": 11.927263}, "pca2": {"value": 30.95953805881997}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.3684251696574009}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.259853}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G25249T", "C29675-"], "S": ["M1229I"]}, "labels": {"aa": "S: M1229I"}}}]}, {"name": "NODE_0001157", "node_attrs": {"div": 12, "num_date": {"value": 2020.5272988374002, "confidence": [2020.4041399214975, 2020.6150874739913]}}, "branch_attrs": {"mutations": {"nuc": ["G24794T"], "S": ["A1078S"]}, "labels": {"aa": "S: A1078S"}}, "children": [{"name": "Peru/UW21011461488/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.0369863013698, "confidence": [2021.0369863013698, 2021.0369863013698]}, "tsne_y": {"value": -6.101073341826093}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.237853280390883}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.064710698501086}, "tsne_x": {"value": -12.535260459396827}, "mds3": {"value": 10.17806709664711}, "umap_x": {"value": 10.835924}, "pca2": {"value": 30.593115130090915}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.7476740527285983}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.149247}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C9745T", "T15015C", "C16610A", "C25511T", "A28254C"]}}}, {"name": "PER/un-CDC-3958226-001/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.629781420765, "confidence": [2020.629781420765, 2020.629781420765]}, "tsne_y": {"value": -6.173366029886331}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.0307493470874043}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.458919594109775}, "tsne_x": {"value": -12.550384044583474}, "mds3": {"value": 10.826023489560937}, "umap_x": {"value": 11.393505}, "pca2": {"value": -3.096248760078104}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.81915491966467}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.696997}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T2402G", "C10741T", "G29777T"]}}}]}]}, {"name": "NODE_0001168", "node_attrs": {"div": 11, "num_date": {"value": 2020.4116909084194, "confidence": [2020.261141119687, 2020.5145545378923]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UGA/MUWRP-JIN200233/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.6707650273224, "confidence": [2020.6707650273224, 2020.6707650273224]}, "tsne_y": {"value": -6.082063880373938}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uganda"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.619925572124101}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.098722064135039}, "tsne_x": {"value": -12.927737492337736}, "mds3": {"value": 15.42201347392071}, "umap_x": {"value": 9.7410145}, "pca2": {"value": -16.875813515934688}, "Nextstrain_clade": {"value": "20D"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 14.349157662042918}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.919375}, "country": {"value": "Uganda"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G376T", "T1016C", "C10507T", "C10702T", "A13566G", "A13912G", "T22207C", "A23083T", "C25427T", "C27002T", "G28857T"]}}}, {"name": "NODE_0001150", "node_attrs": {"div": 27, "num_date": {"value": 2021.0054419317364, "confidence": [2020.933480924697, 2021.0484722257409]}}, "branch_attrs": {"mutations": {"nuc": ["C7124T", "T7424G", "C9857T", "T9867C", "C10029T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "G21786-", "C21789T", "G22299-", "A22300-", "A22301-", "G22302-", "T22303-", "T22304-", "A22305-", "T22306-", "T22307-", "T22308-", "G22309-", "A22310-", "C22311-", "T22312-", "C22313-", "C22314-", "T22315-", "G22316-", "G22317-", "T22318-", "G22319-", "T22917A", "T23031C", "C24138A", "C26894T", "C28253T", "A28271T", "C28311T", "G28913T", "C29311T", "C29370T"], "S": ["G75X", "T76I", "R246X", "S247-", "Y248-", "L249-", "T250-", "P251-", "G252-", "D253X", "L452Q", "F490S", "T859N", "*1274X"]}, "labels": {"aa": "S: G75X, T76I, R246X, S247-, Y248-, L249-, T250-, P251-, G252-, D253X, L452Q, F490S, T859N, *1274X"}}, "children": [{"name": "Peru/PE-CAL-UW21040275154/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.2506849315068, "confidence": [2021.2506849315068, 2021.2506849315068]}, "tsne_y": {"value": -4.636689147563608}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 28.29599943720324}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.867999436768178}, "tsne_x": {"value": -12.708110731940186}, "mds3": {"value": 5.43940394351431}, "umap_x": {"value": 8.829283}, "pca2": {"value": 30.742404431955407}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.103991763102924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.918066}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C14676T", "C16547T", "-21786T", "C27998T"], "S": ["X75V"]}, "labels": {"aa": "S: X75V"}}}, {"name": "NODE_0001151", "node_attrs": {"div": 28, "num_date": {"value": 2021.0471353872854, "confidence": [2020.993182676489, 2021.057405836743]}}, "branch_attrs": {"mutations": {"nuc": ["C21699T", "A21749-", "C21750-", "T21751-", "T21752-", "G21753-", "G21754-", "T21755-", "T21756-", "C21757-", "C21758-", "A21759-", "T21760-", "G21761-", "C21762-", "T21763-", "A21764-", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "T21771-", "C21772-", "T21773-", "C21774-", "T21775-", "G21776-", "G21777-", "G21778-", "A21779-", "C21780-", "C21781-", "A21782-", "A21783-", "T21784-", "G21785-"], "S": ["S46L", "T63-", "W64-", "F65-", "H66-", "A67-", "I68-", "H69-", "V70-", "S71-", "G72-", "T73-", "N74-"]}, "labels": {"aa": "S: S46L, T63-, W64-, F65-, H66-, A67-, I68-, H69-, V70-, S71-, G72-, T73-, N74-"}}, "children": [{"name": "PER/un-CDC-4051674-001/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.058904109589, "confidence": [2021.058904109589, 2021.058904109589]}, "tsne_y": {"value": -4.649466838040147}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.355475685286176}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 0.9641945785419408}, "tsne_x": {"value": -12.709102974825797}, "mds3": {"value": 0.4831307554870297}, "umap_x": {"value": 8.892347}, "pca2": {"value": -5.2109406195964345}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 25.471345277745858}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.064246}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C11817T", "T21787-"], "S": ["X75-"]}, "labels": {"aa": "S: X75-"}}}, {"name": "PER/UPCH_cov0449/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.16301369863, "confidence": [2021.16301369863, 2021.16301369863]}, "tsne_y": {"value": -4.6427161183609496}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "C.37"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -14.549146297708116}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -2.952474739673413}, "tsne_x": {"value": -12.708908587020828}, "mds3": {"value": -1.4400736672182834}, "umap_x": {"value": 8.946971}, "pca2": {"value": -3.625966709535014}, "Nextstrain_clade": {"value": "21G (Lambda)"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 27.231093430692663}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.020719}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C21618A", "C21658T"], "S": ["T19K"]}, "labels": {"aa": "S: T19K"}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0001171", "node_attrs": {"div": 7, "num_date": {"value": 2020.1683397834188, "confidence": [2020.1423975509042, 2020.2028064421331]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000993", "node_attrs": {"div": 8, "num_date": {"value": 2020.2080592042396, "confidence": [2020.1691090210538, 2020.256931102305]}}, "branch_attrs": {"mutations": {"nuc": ["T27299C"]}}, "children": [{"name": "CHL/Santiago-5120618/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -8.375086186433569}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.0317305301668137}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.91380954410715}, "tsne_x": {"value": -12.603208071158033}, "mds3": {"value": 5.4005484198310265}, "umap_x": {"value": 12.38843}, "pca2": {"value": 11.42456461915002}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1704897571075138}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.62482}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000994", "node_attrs": {"div": 9, "num_date": {"value": 2020.2358323557164, "confidence": [2020.1831558581196, 2020.262528820738]}}, "branch_attrs": {"mutations": {"nuc": ["T29148C"]}}, "children": [{"name": "BRA/SPPU-463/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.301912568306, "confidence": [2020.301912568306, 2020.301912568306]}, "tsne_y": {"value": -7.747101085392517}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.101602049562452}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.91119851834294}, "tsne_x": {"value": -11.745696577809175}, "mds3": {"value": 9.511360740734055}, "umap_x": {"value": 11.334406}, "pca2": {"value": 14.659226312044188}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.8657357326996848}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.657014}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A12417T", "G19388A", "C27879A", "A27880G", "C27881A", "G27882T"]}}}, {"name": "NODE_0001105", "node_attrs": {"div": 9, "num_date": {"value": 2020.2433453776493, "confidence": [2020.2041237085848, 2020.2825762701523]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001004", "node_attrs": {"div": 10, "num_date": {"value": 2020.3261387431126, "confidence": [2020.2743878955341, 2020.428073061193]}}, "branch_attrs": {"mutations": {"nuc": ["T13804C"]}}, "children": [{"name": "BRA/HRMS_1126/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5314207650274, "confidence": [2020.5314207650274, 2020.5314207650274]}, "tsne_y": {"value": -7.920787735452353}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.939395633224248}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.16425317669968}, "tsne_x": {"value": -11.429907172746828}, "mds3": {"value": 11.19244377711668}, "umap_x": {"value": 11.346607}, "pca2": {"value": -19.17739383072356}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.061547841879996}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.651645}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1454T", "T1606A", "A8348G", "C17750T", "C17762T"]}}}, {"name": "NODE_0001005", "node_attrs": {"div": 15, "num_date": {"value": 2020.61017564247, "confidence": [2020.551840801251, 2020.6161202185792]}}, "branch_attrs": {"mutations": {"nuc": ["T606C", "G19872T", "T20391G", "C23248T", "C25688T"]}}, "children": [{"name": "PRY/WOR12903A620_202103300_2-4710531/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6325136612022, "confidence": [2020.6325136612022, 2020.6325136612022]}, "tsne_y": {"value": -7.807753596737442}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.6420638340451297}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -7.010459106335252}, "tsne_x": {"value": -10.876050280475177}, "mds3": {"value": 13.96327394430182}, "umap_x": {"value": 10.952023}, "pca2": {"value": -10.448692141954366}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.9902337748127318}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.258991}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["C18115A"]}}}, {"name": "PRY/WOR12903A639_202103297_2-4710550/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6161202185792, "confidence": [2020.6161202185792, 2020.6161202185792]}, "tsne_y": {"value": -7.809639914720552}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.535684066797377}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.044990329657348}, "tsne_x": {"value": -10.937256412412966}, "mds3": {"value": 8.474509012806129}, "umap_x": {"value": 11.503789}, "pca2": {"value": -10.114113588161452}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.2564669082929227}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.808541}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001176", "node_attrs": {"div": 9, "num_date": {"value": 2020.2782513661202, "confidence": [2020.2431672451187, 2020.285889681041]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001178", "node_attrs": {"div": 9, "num_date": {"value": 2020.2882513661202, "confidence": [2020.2622237473877, 2020.2882513661202]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/ICO1016/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2882513661202, "confidence": [2020.2882513661202, 2020.2882513661202]}, "tsne_y": {"value": -8.208675596955992}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.3921101802478203}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -7.102045139211707}, "tsne_x": {"value": -12.22055938075327}, "mds3": {"value": 6.470503172562276}, "umap_x": {"value": 12.315903}, "pca2": {"value": -10.813010911970258}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0971902520777956}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.135862}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001021", "node_attrs": {"div": 10, "num_date": {"value": 2020.3236845564609, "confidence": [2020.2903249872747, 2020.3591657701998]}}, "branch_attrs": {"mutations": {"nuc": ["A2475G"]}}, "children": [{"name": "NODE_0001181", "node_attrs": {"div": 10, "num_date": {"value": 2020.3360553002817, "confidence": [2020.3101144112534, 2020.363824209119]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0478/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_y": {"value": -8.093329500610098}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.162042763297586}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.4853537943242765}, "tsne_x": {"value": -11.972623958682922}, "mds3": {"value": 6.85239595192142}, "umap_x": {"value": 12.256714}, "pca2": {"value": 15.924507348696253}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.4451707592152435}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.9120655}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C22915T"]}}}, {"name": "CHL/Santiago-PUC_MVL_0491/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3647540983607, "confidence": [2020.3647540983607, 2020.3647540983607]}, "tsne_y": {"value": -8.103695948432394}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.081314774162534}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.83148708229748}, "tsne_x": {"value": -11.963296813773614}, "mds3": {"value": 6.675124973918981}, "umap_x": {"value": 12.3347435}, "pca2": {"value": 14.840083093954538}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.5420309294158684}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.917186}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C14805T"]}}}]}, {"name": "NODE_0001183", "node_attrs": {"div": 10, "num_date": {"value": 2020.3347700531972, "confidence": [2020.3096999622167, 2020.3940999618887]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-5132615/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -7.988921830159255}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.1827581879527385}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.02586306188514}, "tsne_x": {"value": -11.713407457204546}, "mds3": {"value": 7.343367969507136}, "umap_x": {"value": 11.405243}, "pca2": {"value": 12.357065691394698}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.83752443275247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.72915}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3467A", "A11201G", "G20038T", "G25477T"]}}}, {"name": "NODE_0001185", "node_attrs": {"div": 10, "num_date": {"value": 2020.4086223785318, "confidence": [2020.3157083560818, 2020.4314602580828]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-5122668/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -8.146523363438067}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.6209808725835624}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.914607742856337}, "tsne_x": {"value": -12.074678697741824}, "mds3": {"value": 7.414216951523922}, "umap_x": {"value": 12.212956}, "pca2": {"value": 11.425356565221556}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1192420528016446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.931809}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-5110605/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -8.100201649496588}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.014669820928623}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.914721233211072}, "tsne_x": {"value": -11.960098996509052}, "mds3": {"value": 6.040205827202188}, "umap_x": {"value": 12.306968}, "pca2": {"value": 11.42582412633145}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.374930561230074}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.932906}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C1108T"]}}}]}]}]}]}, {"name": "NODE_0001187", "node_attrs": {"div": 9, "num_date": {"value": 2020.2858430404067, "confidence": [2020.2537673733673, 2020.3985732294905]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001188", "node_attrs": {"div": 9, "num_date": {"value": 2020.3239077209778, "confidence": [2020.250230182902, 2020.3940986387308]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/Rio-NS2/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_y": {"value": -7.773091783032348}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Rio de Janeiro"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.859291682463328}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.165534219937197}, "tsne_x": {"value": -11.680204106242062}, "mds3": {"value": 8.420979712059736}, "umap_x": {"value": 11.440029}, "pca2": {"value": -19.176154196333023}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.8083400123053148}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.775497}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3429T", "A10874G", "C11095T", "T11686C", "C12415T", "G13118T"]}}}, {"name": "NODE_0001189", "node_attrs": {"div": 9, "num_date": {"value": 2020.3322276163149, "confidence": [2020.2574051133606, 2020.40218793269]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/58301/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4166666666667, "confidence": [2020.4166666666667, 2020.4166666666667]}, "tsne_y": {"value": -8.086056956659126}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Rio de Janeiro"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.400376352185081}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.9592288129613544}, "tsne_x": {"value": -11.69538350314075}, "mds3": {"value": 4.819660808304443}, "umap_x": {"value": 11.939532}, "pca2": {"value": -8.922231273380229}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.4163195883656506}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.255691}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4014T", "C4543T", "C21855T", "T27511-", "A27512-", "C27513-", "G27514-", "A27515-", "G27516-", "G27517-", "G27518-", "C27519-", "A27520-", "A27521-", "T27522-", "T27523-", "C27524-", "A27525-", "C27526-", "C27527-", "A27528-", "T27529-", "T27530-", "T27531-", "C27532-", "A27533-", "T27534-", "C27535-", "C27536-", "T27537-", "C27538-", "T27539-", "A27540-", "G27541-", "C27542-", "T27543-", "G27544-", "A27545-", "T27546-", "A27547-", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "A27624-", "C27625-", "G27626-", "T27627-", "G27628-", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "C27641-", "A27642-", "C27643-", "C27644-", "T27645-", "A27646-", "A27647-", "A27648-", "C27649-", "T27650-", "G27651-", "T27652-", "T27653-", "C27654-", "A27655-", "T27656-", "C27657-", "A27658-", "G27659-", "A27660-", "C27661-", "A27662-", "A27663-", "G27664-", "A27665-", "G27666-", "G27667-", "A27668-", "A27669-", "G27670-", "T27671-", "T27672-", "C27673-", "A27674-", "A27675-", "G27676-", "A27677-", "A27678-", "C27679-", "T27680-", "T27681-", "T27682-", "A27683-", "C27684-", "T27685-", "C27686-", "T27687-", "C27688-", "C27689-", "A27690-", "A27691-", "T27692-", "T27693-", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "C29635T"], "S": ["S98F"]}, "labels": {"aa": "S: S98F"}}}, {"name": "NODE_0001193", "node_attrs": {"div": 9, "num_date": {"value": 2020.3661082375713, "confidence": [2020.2907307898427, 2020.5440240023913]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/16991/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_y": {"value": -8.24911947870988}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Rio de Janeiro"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.158515458419775}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 2.830348722967018}, "tsne_x": {"value": -11.487163414087732}, "mds3": {"value": 4.941292863129334}, "umap_x": {"value": 11.717147}, "pca2": {"value": -14.155905810437876}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.3949818717287026}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.042712}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "C4099T", "A12082T", "A24292G", "A27403-", "T27404-", "T27405-", "C27406-", "T27407-", "T27408-", "T27409-", "T27410-", "C27411-", "T27412-", "T27413-", "G27414-", "G27415-", "C27416-", "A27417-", "C27418-", "T27419-", "G27420-", "A27421-", "T27422-", "A27423-", "A27424-", "C27425-", "A27426-", "C27427-", "T27428-", "C27429-", "G27430-", "C27431-", "T27432-", "A27433-", "C27434-", "T27435-", "T27436-", "G27437-", "T27438-", "G27439-", "A27440-", "G27441-", "C27442-", "T27443-", "T27444-", "T27445-", "A27446-", "T27447-", "C27448-", "A27449-", "C27450-", "T27451-", "A27452-", "C27453-", "C27454-", "A27455-", "A27456-", "G27457-", "A27458-", "G27459-", "T27460-", "G27461-", "T27462-", "G27463-", "T27464-", "T27465-", "A27466-", "G27467-", "A27468-", "G27469-", "G27470-", "T27471-", "A27472-", "C27473-", "A27474-", "A27475-", "C27476-", "A27477-", "G27478-", "T27479-", "A27480-", "C27481-", "T27482-", "T27483-", "T27484-", "T27485-", "A27486-", "A27487-", "A27488-", "A27489-", "G27490-", "A27491-", "A27492-", "C27493-", "C27494-", "T27495-", "T27496-", "G27497-", "C27498-", "T27499-", "C27500-", "T27501-", "T27502-", "C27503-", "T27504-", "G27505-", "G27506-", "A27507-", "A27508-", "C27509-", "A27510-", "T27511-", "A27512-", "C27513-", "G27514-", "A27515-", "G27516-", "G27517-", "G27518-", "C27519-", "A27520-", "A27521-", "T27522-", "T27523-", "C27524-", "A27525-", "C27526-", "C27527-", "A27528-", "T27529-", "T27530-", "T27531-", "C27532-", "A27533-", "T27534-", "C27535-", "C27536-", "T27537-", "C27538-", "T27539-", "A27540-", "G27541-", "C27542-", "T27543-", "G27544-", "A27545-", "T27546-", "A27547-", "A27548-", "C27549-", "A27550-", "A27551-", "A27552-", "T27553-", "T27554-", "T27555-", "G27556-", "C27557-", "A27558-", "C27559-", "T27560-", "G27561-", "A27562-", "C27563-", "T27564-", "T27565-", "G27566-", "C27567-", "T27568-", "T27569-", "T27570-", "A27571-", "G27572-", "C27573-", "A27574-", "C27575-", "T27576-", "C27577-", "A27578-", "A27579-", "T27580-", "T27581-", "T27582-", "G27583-", "C27584-", "T27585-", "T27586-", "T27587-", "T27588-", "G27589-", "C27590-", "T27591-", "T27592-", "G27593-", "T27594-", "C27595-", "C27596-", "T27597-", "G27598-", "A27599-", "C27600-", "G27601-", "G27602-", "C27603-", "G27604-", "T27605-", "A27606-", "A27607-", "A27608-", "A27609-", "C27610-", "A27611-", "C27612-", "G27613-", "T27614-", "C27615-", "T27616-", "A27617-", "T27618-", "C27619-", "A27620-", "G27621-", "T27622-", "T27623-", "A27624-", "C27625-", "G27626-", "T27627-", "G27628-", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "C27641-", "A27642-", "C27643-", "C27644-", "T27645-", "A27646-", "A27647-", "A27648-", "C27649-", "T27650-", "G27651-", "T27652-", "T27653-", "C27654-", "A27655-", "T27656-", "C27657-", "A27658-", "G27659-", "A27660-", "C27661-", "A27662-", "A27663-", "G27664-", "A27665-", "G27666-", "G27667-", "A27668-", "A27669-", "G27670-", "T27671-", "T27672-", "C27673-", "A27674-", "A27675-", "G27676-", "A27677-", "A27678-", "C27679-", "T27680-", "T27681-", "T27682-", "A27683-", "C27684-", "T27685-", "C27686-", "T27687-", "C27688-", "C27689-", "A27690-", "A27691-", "T27692-", "T27693-", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-", "T27704-", "T27705-", "G27706-", "C27707-", "G27708-", "G27709-", "C27710-", "A27711-", "A27712-", "T27713-", "A27714-", "G27715-", "T27716-", "G27717-", "T27718-", "T27719-", "T27720-", "A27721-", "T27722-", "A27723-", "A27724-", "C27725-", "A27726-", "C27727-", "T27728-", "T27729-", "T27730-", "G27731-", "C27732-", "T27733-", "T27734-", "C27735-", "A27736-", "C27737-", "A27738-", "C27739-", "T27740-", "C27741-", "C29857-", "T29858-", "T29859-", "A29860-", "G29861-", "G29862-", "A29863-", "G29864-", "A29865-", "A29866-", "T29867-", "G29868-", "A29869-", "A29885T"]}}}, {"name": "NODE_0001196", "node_attrs": {"div": 9, "num_date": {"value": 2020.4099961014206, "confidence": [2020.297932870322, 2020.6088293813707]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001011", "node_attrs": {"div": 20, "num_date": {"value": 2020.75, "confidence": [2020.7160533132221, 2020.75]}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "C1077T", "C1190A", "A4241G", "C6633T", "A14774G", "C15654T", "T20421C", "A21137G", "G23383A", "A27379-", "T27380-", "T27381-", "G27382-", "C27999T"]}}, "children": [{"name": "URY/1087_del4/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_y": {"value": -6.882777835371118}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.5920357519210877}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.907174666257301}, "tsne_x": {"value": -10.026589645033813}, "mds3": {"value": 18.831319015095943}, "umap_x": {"value": 10.091077}, "pca2": {"value": -10.019782514349972}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 7.681700635367908}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.223633}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "URY/969_del4/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.75, "confidence": [2020.75, 2020.75]}, "tsne_y": {"value": -6.882778895865733}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.7758419697459806}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.617556419221053}, "tsne_x": {"value": -10.027288860858452}, "mds3": {"value": 19.269370699278983}, "umap_x": {"value": 10.05212}, "pca2": {"value": -9.384865170424508}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 6.807036664997451}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.182592}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001198", "node_attrs": {"div": 20, "num_date": {"value": 2020.7508732928918, "confidence": [2020.7355743148903, 2020.7853708183472]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/1086_del4/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_y": {"value": -6.879174780857354}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.514310683138433}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.448904807666786}, "tsne_x": {"value": -10.02126372533165}, "mds3": {"value": 19.81140127584992}, "umap_x": {"value": 9.975796}, "pca2": {"value": 5.062721454527316}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 7.689011739999461}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.112895}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C13667T"]}}}, {"name": "URY/1104_del4/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.7909836065573, "confidence": [2020.7909836065573, 2020.7909836065573]}, "tsne_y": {"value": -6.881663992249069}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.3432533738899926}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.5356687610356055}, "tsne_x": {"value": -10.029541767561913}, "mds3": {"value": 9.473603852553495}, "umap_x": {"value": 10.097589}, "pca2": {"value": 19.277989182388}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 15.453859459535874}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.241524}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001204", "node_attrs": {"div": 9, "num_date": {"value": 2020.4594278544869, "confidence": [2020.2925207038072, 2020.6674369608618]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7116539533195, "confidence": [2020.564524512883, 2020.9274368216802]}}, "branch_attrs": {"mutations": {"nuc": ["A298G", "C8713T", "A8812G", "C17274T", "C21707T", "A22803G", "C25904T", "G29134A"], "S": ["H49Y", "Q414R"]}, "labels": {"aa": "S: H49Y, Q414R"}}, "children": [{"name": "Argentina/UW20123156495/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.9986338797814, "confidence": [2020.9986338797814, 2020.9986338797814]}, "tsne_y": {"value": -7.332225788122999}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.5"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.964658078499257}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.988106277563723}, "tsne_x": {"value": -11.340025823577452}, "mds3": {"value": 13.805145597569831}, "umap_x": {"value": 9.332589}, "pca2": {"value": 30.42179799677896}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 11.824923615969697}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.600615}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2507T", "C4234T", "C14391A", "C16946T", "G21718C", "G22468T", "G25423C", "C29421T"], "S": ["Q52H"]}, "labels": {"aa": "S: Q52H"}}}, {"name": "Argentina/UW21050192315/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3301369863013, "confidence": [2021.3301369863013, 2021.3301369863013]}, "tsne_y": {"value": -7.263011854216892}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.5"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.43513381027656}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.034788293991607}, "tsne_x": {"value": -11.20592132051257}, "mds3": {"value": 15.069380206700153}, "umap_x": {"value": 8.814899}, "pca2": {"value": 30.43698112354304}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 13.219142862563192}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.617008}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1218T", "C6026T", "T7020C", "C7732T", "G12838A", "A13396G", "C15744T", "T17364A", "C20178T", "C22675T", "C22858T", "C23029T", "G25720T", "C29144T", "C29171T"]}}}]}, {"name": "NODE_0001206", "node_attrs": {"div": 9, "num_date": {"value": 2020.49232496506, "confidence": [2020.2968335081694, 2020.6803808460802]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/UW20112041379/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.886612021858, "confidence": [2020.886612021858, 2020.886612021858]}, "tsne_y": {"value": -7.372303268364041}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.9"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.6746427158605615}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.052317629517807}, "tsne_x": {"value": -11.824905023964922}, "mds3": {"value": 18.84381181816661}, "umap_x": {"value": 10.196232}, "pca2": {"value": 30.439274836673743}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.461934628639266}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.32167}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1264T", "G2879A", "C6573T", "C7600T", "C7851T", "T11078C", "C19602T", "G19656T", "G23012A", "A27853C", "C29722T"], "S": ["E484K"]}, "labels": {"aa": "S: E484K"}}}, {"name": "PRY/202102822_631857/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_y": {"value": -7.353879916518775}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.400044540648887}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.274429485391088}, "tsne_x": {"value": -11.75171889167056}, "mds3": {"value": 16.745221308205103}, "umap_x": {"value": 10.101554}, "pca2": {"value": 10.246144006303178}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 11.389887743957331}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.222132}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "C3743T", "C4560T", "C4893T", "T6763C", "C11866T", "A15534G", "C16329T", "C20483T", "C25578T", "C25665T", "C28377T"]}}}]}]}]}]}]}]}, {"name": "NODE_0001207", "node_attrs": {"div": 9, "num_date": {"value": 2020.330914156431, "confidence": [2020.2487277322539, 2020.4053213794134]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001016", "node_attrs": {"div": 10, "num_date": {"value": 2020.4289027600396, "confidence": [2020.2836523450785, 2020.5375737290235]}}, "branch_attrs": {"mutations": {"nuc": ["G26416T"]}}, "children": [{"name": "ARG/Cordoba-2858/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7035519125684, "confidence": [2020.7035519125684, 2020.7035519125684]}, "tsne_y": {"value": -8.298809561385958}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.766097602442559}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.961495994401385}, "tsne_x": {"value": -11.383019197345714}, "mds3": {"value": 14.947864044672793}, "umap_x": {"value": 10.889204}, "pca2": {"value": 11.930565341633834}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1955587367988438}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.16292}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2044T", "C10626T", "C11824T", "A22052C", "C26645T", "C29555T"], "S": ["N164H"]}, "labels": {"aa": "S: N164H"}}}, {"name": "NODE_0001017", "node_attrs": {"div": 12, "num_date": {"value": 2020.558100082797, "confidence": [2020.3896913175358, 2020.6468756438876]}}, "branch_attrs": {"mutations": {"nuc": ["G3155T", "A4485G"]}}, "children": [{"name": "ARG/Cordoba-3719/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.717213114754, "confidence": [2020.717213114754, 2020.717213114754]}, "tsne_y": {"value": -8.229149501229452}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.6026979600693956}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.077212020364523}, "tsne_x": {"value": -11.355185635801623}, "mds3": {"value": 11.817146555163268}, "umap_x": {"value": 11.353932}, "pca2": {"value": 12.695747758691368}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.06982910958073}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.640236}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C7945T", "C9073T", "G17019T"]}}}, {"name": "ARG/Cordoba-1484/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7117486338798, "confidence": [2020.7117486338798, 2020.7117486338798]}, "tsne_y": {"value": -8.259772536251091}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "N.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.779827644629346}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.911517748630281}, "tsne_x": {"value": -11.170479575522648}, "mds3": {"value": 8.373127986114781}, "umap_x": {"value": 10.949897}, "pca2": {"value": 11.429792608650144}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.39139602342434}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.275559}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1663T", "A4221G", "C5493T", "G14020T", "C27431T"]}}}]}]}, {"name": "NODE_0000996", "node_attrs": {"div": 11, "num_date": {"value": 2020.3892507175942, "confidence": [2020.3247661085659, 2020.4641275091567]}}, "branch_attrs": {"mutations": {"nuc": ["C8293T", "A22720G"]}}, "children": [{"name": "BRA/HRMS_970/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.542349726776, "confidence": [2020.542349726776, 2020.542349726776]}, "tsne_y": {"value": -10.827289764991193}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.9638943350396172}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.915671229413533}, "tsne_x": {"value": -12.542028345842564}, "mds3": {"value": 13.668647556098152}, "umap_x": {"value": 11.025329}, "pca2": {"value": -18.90323905934288}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.6905451025901964}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.324113}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2919T", "C9534T", "C21812A", "G27816T", "C29769T"], "S": ["L84I"]}, "labels": {"aa": "S: L84I"}}}, {"name": "NODE_0000997", "node_attrs": {"div": 15, "num_date": {"value": 2020.5278090609422, "confidence": [2020.491041601395, 2020.5341530054645]}}, "branch_attrs": {"mutations": {"nuc": ["A5089G", "G11083T", "C27629-", "C27630-", "A27631-", "G27632-", "A27633-", "T27634-", "C27635-", "A27636-", "G27637-", "T27638-", "T27639-", "T27640-", "G28380A", "C28775T"]}}, "children": [{"name": "URY/M284/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5341530054645, "confidence": [2020.5341530054645, 2020.5341530054645]}, "tsne_y": {"value": -11.73123781661838}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.599491207389875}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.848828188852781}, "tsne_x": {"value": -12.790921541021428}, "mds3": {"value": 6.095236484163723}, "umap_x": {"value": 11.274314}, "pca2": {"value": -2.6614431960007714}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.0662866252533068}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.589096}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001213", "node_attrs": {"div": 15, "num_date": {"value": 2020.5396174863388, "confidence": [2020.5152670846703, 2020.5396174863388]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/299_N.7_del12/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5396174863388, "confidence": [2020.5396174863388, 2020.5396174863388]}, "tsne_y": {"value": -11.730154780854848}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.628601333052751}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.303928779059887}, "tsne_x": {"value": -12.79138134817085}, "mds3": {"value": 6.128899549692116}, "umap_x": {"value": 11.236765}, "pca2": {"value": -10.466917585988211}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.9588826034528566}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.556694}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001214", "node_attrs": {"div": 15, "num_date": {"value": 2020.631051090153, "confidence": [2020.5542675460638, 2020.6325136612022]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/649_N.7_del12/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6325136612022, "confidence": [2020.6325136612022, 2020.6325136612022]}, "tsne_y": {"value": -11.752076773560258}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.833649151391198}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.338666141379634}, "tsne_x": {"value": -12.79055602654944}, "mds3": {"value": 5.456861036525235}, "umap_x": {"value": 11.301068}, "pca2": {"value": -8.261434121494826}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.313425349634392}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.632947}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001000", "node_attrs": {"div": 16, "num_date": {"value": 2020.6896040996444, "confidence": [2020.6526485926186, 2020.7090163934427]}}, "branch_attrs": {"mutations": {"nuc": ["G22249A"]}}, "children": [{"name": "URY/879/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_y": {"value": -11.8052833056448}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.66064003745741}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.265122801101334}, "tsne_x": {"value": -12.797764994830986}, "mds3": {"value": 5.376842817582368}, "umap_x": {"value": 10.907071}, "pca2": {"value": -10.520132060529612}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.807285557543817}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.204745}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5646T", "T27685-", "C27686-", "T27687-", "C27688-", "C27689-", "A27690-", "A27691-", "T27692-", "T27693-", "T27694-", "T27695-", "T27696-", "C27697-", "T27698-", "T27699-", "A27700-", "T27701-", "T27702-", "G27703-", "T27704-", "T27705-", "G27706-", "C27707-", "G27708-", "G27709-", "C27710-", "A27711-", "A27712-", "T27713-", "A27714-", "G27715-", "T27716-", "G27717-", "T27718-", "T27719-", "T27720-", "A27721-", "T27722-", "A27723-", "A27724-", "C27725-", "A27726-", "C27727-", "T27728-", "T27729-", "T27730-", "G27731-", "C27732-", "T27733-", "T27734-", "C27735-", "A27736-", "C27737-", "A27738-", "C27739-", "T27740-", "C27741-", "A27742-", "A27743-", "A27744-", "A27745-", "G27746-", "A27747-", "A27748-", "A27749-", "G27750-", "A27751-", "C27752-"]}}}, {"name": "URY/840_N.7_del12/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_y": {"value": -11.78356976839282}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.657829095163297}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.118460692671148}, "tsne_x": {"value": -12.793167460032487}, "mds3": {"value": 5.898541148836991}, "umap_x": {"value": 11.048356}, "pca2": {"value": -8.9669151766231}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.383535743464236}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.387925}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001216", "node_attrs": {"div": 16, "num_date": {"value": 2020.7104752579946, "confidence": [2020.6699139908303, 2020.7508315381942]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "URY/1102_N7_del12/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7909836065573, "confidence": [2020.7909836065573, 2020.7909836065573]}, "tsne_y": {"value": -11.801016695698342}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.606529278170488}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.602033690741677}, "tsne_x": {"value": -12.797044506789767}, "mds3": {"value": 6.38395619559138}, "umap_x": {"value": 10.8896055}, "pca2": {"value": -10.64758886635937}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.487962270567928}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.20066}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C24919T"]}}}, {"name": "URY/1021_N.7_del12/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_y": {"value": -11.775148703687917}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.33"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Uruguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.33"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.304548477719875}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.329137886433486}, "tsne_x": {"value": -12.793211228227491}, "mds3": {"value": 6.215770085407769}, "umap_x": {"value": 11.018246}, "pca2": {"value": -10.66106776548911}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.803592422679842}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.291383}, "country": {"value": "Uruguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C13323A"]}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001025", "node_attrs": {"div": 8, "num_date": {"value": 2020.223986215671, "confidence": [2020.1919060519378, 2020.2254098360656]}}, "branch_attrs": {"mutations": {"nuc": ["C313T"]}}, "children": [{"name": "FRA/IHUCOVID-032225_Nova/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_y": {"value": -8.314020137270711}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "France"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.3046839830672742}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.477560764587451}, "tsne_x": {"value": -13.1503058055048}, "mds3": {"value": 5.739844305938354}, "umap_x": {"value": 12.352311}, "pca2": {"value": 11.259251950850024}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.2738203933752886}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.573673}, "country": {"value": "France"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001218", "node_attrs": {"div": 8, "num_date": {"value": 2020.2335699987266, "confidence": [2020.2052527628784, 2020.269639370847]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner445/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3920765027322, "confidence": [2020.3920765027322, 2020.3920765027322]}, "tsne_y": {"value": -7.979771335754361}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Hokkaido"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.954829340775663}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -3.940435626459871}, "tsne_x": {"value": -13.528923906728416}, "mds3": {"value": 5.977452010655099}, "umap_x": {"value": 12.229868}, "pca2": {"value": 0.3646031012058102}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.2541698546417541}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.89322}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C4320T", "C12357T", "C13862T"]}}}, {"name": "NODE_0001219", "node_attrs": {"div": 8, "num_date": {"value": 2020.2442542457902, "confidence": [2020.2073711036446, 2020.2718579234972]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ISR/hCov-19-Israel-CVL-n-6051/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2718579234972, "confidence": [2020.2718579234972, 2020.2718579234972]}, "tsne_y": {"value": -8.308339109132763}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Israel"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.5228229536452325}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.163694632314511}, "tsne_x": {"value": -13.136212603090565}, "mds3": {"value": 5.08426724947019}, "umap_x": {"value": 12.346211}, "pca2": {"value": -19.17425462665396}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1039227325143414}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.670021}, "country": {"value": "Israel"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001221", "node_attrs": {"div": 8, "num_date": {"value": 2020.2720810238807, "confidence": [2020.1995391877792, 2020.2938937562556]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001224", "node_attrs": {"div": 8, "num_date": {"value": 2020.279589594317, "confidence": [2020.2051149086133, 2020.3051063436324]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NE-MP_NCOV20-9162/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_y": {"value": -7.777055179958322}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nebraska"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.104276695097681}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -3.953254787091504}, "tsne_x": {"value": -13.6315178740093}, "mds3": {"value": 7.895416264710295}, "umap_x": {"value": 12.105931}, "pca2": {"value": -0.2722632359257754}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.5651405230691967}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.579975}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["T2815C", "A11348G", "T28382C", "T29791C"]}}}, {"name": "AUS/VIC1513/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3346994535518, "confidence": [2020.3346994535518, 2020.3346994535518]}, "tsne_y": {"value": -7.913367391750947}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.8817149190047144}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 2.9951077837468096}, "tsne_x": {"value": -13.459752241590058}, "mds3": {"value": 5.071503600673148}, "umap_x": {"value": 12.255202}, "pca2": {"value": -6.721176214806611}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.6160100820910371}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.914025}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G23282T", "C29675T", "G29742A"], "S": ["D574Y"]}, "labels": {"aa": "S: D574Y"}}}]}, {"name": "NODE_0001225", "node_attrs": {"div": 8, "num_date": {"value": 2020.2879347129024, "confidence": [2020.1743538553517, 2020.401843706955]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001027", "node_attrs": {"div": 9, "num_date": {"value": 2020.3664755632847, "confidence": [2020.2576308786063, 2020.511838995937]}}, "branch_attrs": {"mutations": {"nuc": ["C5700A"]}}, "children": [{"name": "NODE_0001030", "node_attrs": {"div": 10, "num_date": {"value": 2020.411420728805, "confidence": [2020.300422572143, 2020.532351299879]}}, "branch_attrs": {"mutations": {"nuc": ["C20384T"]}}, "children": [{"name": "IND/CMP_34_FMR/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.6898907103825, "confidence": [2020.6898907103825, 2020.6898907103825]}, "tsne_y": {"value": -9.774083341299493}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Maharashtra"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -15.4942266422021}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.209086838058551}, "tsne_x": {"value": -14.795760233440644}, "mds3": {"value": 12.596025430191617}, "umap_x": {"value": 9.249824}, "pca2": {"value": -9.439790083467816}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 18.34045274295869}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.496349}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1642T", "G1957A", "G7070T", "C9246T", "C16887T", "A19314G", "A19810G", "C21513T", "T22585G", "T23031C", "A23116T", "A24389C", "G24390C", "C24919T", "T29710A"], "S": ["F490S", "S943P"]}, "labels": {"aa": "S: F490S, S943P"}}}, {"name": "IND/CD208550/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_y": {"value": -7.699814847184966}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.376077308850035}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.265651056849615}, "tsne_x": {"value": -14.226035942418696}, "mds3": {"value": 6.70478856392773}, "umap_x": {"value": 11.406094}, "pca2": {"value": -14.75509856105382}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.3526381956819245}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.713924}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T7734C", "C11750T", "T24073C", "G26020A", "C28253T"]}}}]}, {"name": "NODE_0001228", "node_attrs": {"div": 9, "num_date": {"value": 2020.4567967300934, "confidence": [2020.2257433065968, 2020.565439627416]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/340513774_S1_L001/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.627049180328, "confidence": [2020.627049180328, 2020.627049180328]}, "tsne_y": {"value": -7.8869958203260495}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.3188046119416903}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -8.171432084902753}, "tsne_x": {"value": -13.862976727874663}, "mds3": {"value": 6.391946128390551}, "umap_x": {"value": 12.228424}, "pca2": {"value": 3.875487013285063}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.9358510274709556}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.822753}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C6638T", "C15678T", "C18086T"]}}}, {"name": "NODE_0001229", "node_attrs": {"div": 9, "num_date": {"value": 2020.465536001446, "confidence": [2020.23527310621, 2020.5880198661205]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BHR/340858468_S5/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.782786885246, "confidence": [2020.782786885246, 2020.782786885246]}, "tsne_y": {"value": -7.792453103775424}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.718220153694386}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.305666962117572}, "tsne_x": {"value": -14.388604300310485}, "mds3": {"value": 14.140157824656344}, "umap_x": {"value": 10.853853}, "pca2": {"value": 3.565505299909511}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.6301440176064134}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.156888}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G376T", "C664T", "T3295C", "C16726T", "C22987T", "C25919T", "G26690T", "G29240A"]}}}, {"name": "NODE_0001031", "node_attrs": {"div": 15, "num_date": {"value": 2020.7113190140506, "confidence": [2020.6484674070985, 2020.7696361426001]}}, "branch_attrs": {"mutations": {"nuc": ["G219T", "T658C", "C4084T", "T14619C", "G20569T", "C21108T"]}}, "children": [{"name": "BHR/340859867_S9/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_y": {"value": -8.260582869523837}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.6350949004083809}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.087665115531857}, "tsne_x": {"value": -15.51921795554896}, "mds3": {"value": 12.68755094604862}, "umap_x": {"value": 11.047405}, "pca2": {"value": 4.062653725587922}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.909119561006362}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.305864}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G16647T"]}}}, {"name": "BHR/340846550_S17_L001/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7773224043715, "confidence": [2020.7773224043715, 2020.7773224043715]}, "tsne_y": {"value": -8.267061860523437}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.306"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.429254794538838}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.9160817286689396}, "tsne_x": {"value": -15.46326453229098}, "mds3": {"value": 8.631291333902976}, "umap_x": {"value": 11.182831}, "pca2": {"value": -13.874640723078697}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.5509091668454331}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.509656}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1741G", "C23029T"]}}}]}]}]}]}, {"name": "NODE_0001233", "node_attrs": {"div": 8, "num_date": {"value": 2020.3308069865052, "confidence": [2020.1716937633578, 2020.399323697305]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001037", "node_attrs": {"div": 14, "num_date": {"value": 2020.4514209654603, "confidence": [2020.4031942654767, 2020.4848963127672]}}, "branch_attrs": {"mutations": {"nuc": ["T4346C", "C9286T", "C10376T", "C14708T", "C28725T", "G29692T"]}}, "children": [{"name": "NODE_0001235", "node_attrs": {"div": 14, "num_date": {"value": 2020.49127384942, "confidence": [2020.403988099287, 2020.61405855802]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "JPN/HiroHC153c/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6325136612022, "confidence": [2020.6325136612022, 2020.6325136612022]}, "tsne_y": {"value": -11.247080350964}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.224180293591262}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.174257837297582}, "tsne_x": {"value": -16.082896882563816}, "mds3": {"value": 9.553800599539748}, "umap_x": {"value": 10.8873005}, "pca2": {"value": -9.1217946082426}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 0.5612257322871232}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.188879}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1066A", "C6990T", "T8076C"]}}}, {"name": "NODE_0001236", "node_attrs": {"div": 14, "num_date": {"value": 2020.5584934178312, "confidence": [2020.4007942880967, 2020.6599695910813]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "JPN/JP_Hiro81924c/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7445355191257, "confidence": [2020.7445355191257, 2020.7445355191257]}, "tsne_y": {"value": -11.269571492887517}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.333654242878293}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.934457499130766}, "tsne_x": {"value": -16.09579638151445}, "mds3": {"value": 11.895086305587023}, "umap_x": {"value": 10.5902815}, "pca2": {"value": -0.2205792654511049}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 3.033082776333481}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.845802}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4827T", "C7728T", "C7732T", "C17004T", "C28854T"]}}}, {"name": "Japan/Donner206/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_y": {"value": -11.23560212114633}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.3719617665121975}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9528863670860335}, "tsne_x": {"value": -16.072464926032847}, "mds3": {"value": 9.940843921841957}, "umap_x": {"value": 11.106833}, "pca2": {"value": -0.2241213806473981}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": -0.2342196072329921}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.41053}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6664T", "G24197T"], "S": ["A879S"]}, "labels": {"aa": "S: A879S"}}}]}]}, {"name": "NODE_0001040", "node_attrs": {"div": 15, "num_date": {"value": 2020.4710178956607, "confidence": [2020.4391858319086, 2020.4952175845542]}}, "branch_attrs": {"mutations": {"nuc": ["T22020C"], "S": ["M153T"]}, "labels": {"aa": "S: M153T"}}, "children": [{"name": "LC655322", "node_attrs": {"div": 17, "num_date": {"value": 2020.4986338797814, "confidence": [2020.4986338797814, 2020.4986338797814]}, "tsne_y": {"value": -11.252634929499203}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanagawa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.562862143665768}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.879689357106745}, "tsne_x": {"value": -16.093197925893612}, "mds3": {"value": 14.680732783853006}, "umap_x": {"value": 10.8146305}, "pca2": {"value": -13.015926506810578}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 1.117574628218889}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.014354}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6648T", "A27338G"]}}}, {"name": "NODE_0001149", "node_attrs": {"div": 15, "num_date": {"value": 2020.4936242694466, "confidence": [2020.4597023535418, 2020.535712993958]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001240", "node_attrs": {"div": 15, "num_date": {"value": 2020.5396174863388, "confidence": [2020.5010538208726, 2020.5396174863388]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner63/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5532786885246, "confidence": [2020.5532786885246, 2020.5532786885246]}, "tsne_y": {"value": -11.227302097620324}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.774667033368286}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -3.9554269057661977}, "tsne_x": {"value": -16.071150534726645}, "mds3": {"value": 12.642465354024464}, "umap_x": {"value": 11.121692}, "pca2": {"value": -0.2272241788746472}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": -1.4216810618060254}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.417659}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {}}}, {"name": "LC654461", "node_attrs": {"div": 15, "num_date": {"value": 2020.5396174863388, "confidence": [2020.5396174863388, 2020.5396174863388]}, "tsne_y": {"value": -11.22642521526167}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Tokyo"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.372445057205782}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.879426930181482}, "tsne_x": {"value": -16.068008677658526}, "mds3": {"value": 7.780993383794587}, "umap_x": {"value": 11.565656}, "pca2": {"value": -13.017549644426325}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 0.131626612191461}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.80756}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001156", "node_attrs": {"div": 15, "num_date": {"value": 2020.5131654629697, "confidence": [2020.4838404893974, 2020.539633983615]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001242", "node_attrs": {"div": 15, "num_date": {"value": 2020.537441126254, "confidence": [2020.466617821557, 2020.6313018575445]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner94/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6489071038252, "confidence": [2020.6489071038252, 2020.6489071038252]}, "tsne_y": {"value": -11.243581061260844}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.8978517577250726}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9554419344372542}, "tsne_x": {"value": -16.083997773335945}, "mds3": {"value": 12.303270766312892}, "umap_x": {"value": 11.043315}, "pca2": {"value": -0.2272251754427791}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 0.6368635421117024}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.339111}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C18431T"]}}}, {"name": "NODE_0001243", "node_attrs": {"div": 15, "num_date": {"value": 2020.5696454736906, "confidence": [2020.46532022907, 2020.6360579455975]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner115/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_y": {"value": -11.282238638056484}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.8756101290890738}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.963075637971931}, "tsne_x": {"value": -16.120034048263264}, "mds3": {"value": 20.27348611770887}, "umap_x": {"value": 10.096607}, "pca2": {"value": -0.2019741867243698}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 5.35261035387389}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.221069}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C106T", "T2489C", "G2731A", "C7573T", "C8982T", "C16887T"]}}}, {"name": "NODE_0001245", "node_attrs": {"div": 15, "num_date": {"value": 2020.6310062015943, "confidence": [2020.459661629499, 2020.6806461665906]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner214/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7718579234972, "confidence": [2020.7718579234972, 2020.7718579234972]}, "tsne_y": {"value": -11.262999785006832}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.70905664326829}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.817458504439517}, "tsne_x": {"value": -16.096678397444403}, "mds3": {"value": 9.213247506653389}, "umap_x": {"value": 10.872721}, "pca2": {"value": -0.2321585736850859}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 1.9192917622685848}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.158986}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G19388T", "A27633G", "A27865C"]}}}, {"name": "Japan/Donner116/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_y": {"value": -11.251283016074238}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.70004150235913}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.954948738999981}, "tsne_x": {"value": -16.092524383797443}, "mds3": {"value": 13.394672099837209}, "umap_x": {"value": 10.948162}, "pca2": {"value": -0.2219054467950431}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 4.147258005614951}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.218625}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C21575T", "C28311T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}]}]}, {"name": "NODE_0001166", "node_attrs": {"div": 15, "num_date": {"value": 2020.5285609104303, "confidence": [2020.4958372616952, 2020.5460108051875]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001169", "node_attrs": {"div": 15, "num_date": {"value": 2020.5773726684542, "confidence": [2020.5365227526909, 2020.577868852459]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LC654464", "node_attrs": {"div": 15, "num_date": {"value": 2020.594262295082, "confidence": [2020.594262295082, 2020.594262295082]}, "tsne_y": {"value": -11.22556776309854}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Tokyo"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.265342522796719}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.879426930181482}, "tsne_x": {"value": -16.06938639003906}, "mds3": {"value": 10.341549623202294}, "umap_x": {"value": 11.194767}, "pca2": {"value": -13.017549644426325}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": -0.0383196139871276}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.495558}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "Japan/Donner75/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.577868852459, "confidence": [2020.577868852459, 2020.577868852459]}, "tsne_y": {"value": -11.226617061863838}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.770767392667722}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.955426905766198}, "tsne_x": {"value": -16.06863793018446}, "mds3": {"value": 8.60626952749475}, "umap_x": {"value": 11.505389}, "pca2": {"value": -0.2272241788746462}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": -0.0325219272219585}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.707314}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001045", "node_attrs": {"div": 16, "num_date": {"value": 2020.5560109289618, "confidence": [2020.5360243123623, 2020.5560109289618]}}, "branch_attrs": {"mutations": {"nuc": ["G14181A"]}}, "children": [{"name": "Japan/Donner65/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5560109289618, "confidence": [2020.5560109289618, 2020.5560109289618]}, "tsne_y": {"value": -11.243131597654362}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.1858846692871365}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.24219603834109}, "tsne_x": {"value": -16.084639984275043}, "mds3": {"value": 12.120909598212885}, "umap_x": {"value": 11.096635}, "pca2": {"value": -5.397798751453772}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 0.7200919286678003}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.373071}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "Japan/Donner456/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5969945355191, "confidence": [2020.5969945355191, 2020.5969945355191]}, "tsne_y": {"value": -11.242999396639007}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.284"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "10"}, "division": {"value": "Hokkaido"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.284"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.285342802653371}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.1907726386116253}, "tsne_x": {"value": -16.08317190074742}, "mds3": {"value": 10.789759379819731}, "umap_x": {"value": 11.137167}, "pca2": {"value": 0.009139741284421}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "10"}, "mds2": {"value": 1.849874305971544}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.455295}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}, {"name": "NODE_0001050", "node_attrs": {"div": 11, "num_date": {"value": 2020.513619726599, "confidence": [2020.3574960376961, 2020.6671241198746]}}, "branch_attrs": {"mutations": {"nuc": ["C18167T", "G21518T", "G28975T"]}}, "children": [{"name": "NODE_0001055", "node_attrs": {"div": 12, "num_date": {"value": 2020.5609271114186, "confidence": [2020.4286965511978, 2020.693008394206]}}, "branch_attrs": {"mutations": {"nuc": ["C6433T"]}}, "children": [{"name": "Japan/Donner288/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.7636612021859, "confidence": [2020.7636612021859, 2020.7636612021859]}, "tsne_y": {"value": -6.75195383008447}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -8.319951427331452}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.5110652088519374}, "tsne_x": {"value": -14.094206993127454}, "mds3": {"value": 18.38907796745286}, "umap_x": {"value": 10.175951}, "pca2": {"value": 0.5005495563939483}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.686141607855391}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.320911}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A2368G", "C5826T", "T15597C", "T18897C", "G21724T", "G22199T", "C25276T", "C25685T", "T29021A"], "S": ["L54F", "V213L"]}, "labels": {"aa": "S: L54F, V213L"}}}, {"name": "NODE_0001249", "node_attrs": {"div": 12, "num_date": {"value": 2020.6033548738565, "confidence": [2020.4341765329234, 2020.7170849598592]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner224/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8948087431695, "confidence": [2020.8948087431695, 2020.8948087431695]}, "tsne_y": {"value": -6.415809804947943}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.7397285122389297}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.958323015167766}, "tsne_x": {"value": -14.291041338146162}, "mds3": {"value": 16.242011162013753}, "umap_x": {"value": 10.607817}, "pca2": {"value": -0.2373340540038684}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.68863182041856}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.843733}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A8390G", "C8655T", "C11109T", "C11195T", "A19067T", "C24795T"], "S": ["A1078V"]}, "labels": {"aa": "S: A1078V"}}}, {"name": "NODE_0001057", "node_attrs": {"div": 15, "num_date": {"value": 2020.8009679321458, "confidence": [2020.7305320903515, 2020.823604962181]}}, "branch_attrs": {"mutations": {"nuc": ["G8371T", "C9207T", "C15240T"]}}, "children": [{"name": "Japan/Donner291/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8237704918033, "confidence": [2020.8237704918033, 2020.8237704918033]}, "tsne_y": {"value": -6.281507797441198}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.338556765141666}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.961175610948077}, "tsne_x": {"value": -14.409660675445693}, "mds3": {"value": 9.500224374741135}, "umap_x": {"value": 11.234541}, "pca2": {"value": -0.2357236681557867}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 5.311289499101191}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.563314}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G21123T"]}}}, {"name": "NODE_0001251", "node_attrs": {"div": 15, "num_date": {"value": 2020.8756830601094, "confidence": [2020.7993350421532, 2020.8756830601094]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LC655376", "node_attrs": {"div": 20, "num_date": {"value": 2021.1739726027397, "confidence": [2021.1739726027397, 2021.1739726027397]}, "tsne_y": {"value": -6.205460443949122}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanagawa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.361756352962466}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.84902503709551}, "tsne_x": {"value": -14.348566433367347}, "mds3": {"value": 8.931049981587549}, "umap_x": {"value": 10.607536}, "pca2": {"value": -12.955920548909576}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 8.806431419458704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.771571}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A27G", "C1218T", "G6847T", "T6980A", "C23086T"]}}}, {"name": "Japan/Donner133/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8756830601094, "confidence": [2020.8756830601094, 2020.8756830601094]}, "tsne_y": {"value": -6.312660553657346}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.592360572265533}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.960224880219222}, "tsne_x": {"value": -14.43478999484982}, "mds3": {"value": 10.700404435997752}, "umap_x": {"value": 11.350864}, "pca2": {"value": -0.2363166252314944}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.947522777487986}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.60786}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001252", "node_attrs": {"div": 11, "num_date": {"value": 2020.5378807202435, "confidence": [2020.367299001587, 2020.673063041394]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001052", "node_attrs": {"div": 14, "num_date": {"value": 2020.7088537687262, "confidence": [2020.592751312498, 2020.8030116450932]}}, "branch_attrs": {"mutations": {"nuc": ["G1738A", "A6592G", "G28541A"]}}, "children": [{"name": "JPN/HiroHC199c/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8374316939892, "confidence": [2020.8374316939892, 2020.8374316939892]}, "tsne_y": {"value": -5.728606688843521}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.0865845924274726}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -7.824190596910558}, "tsne_x": {"value": -14.61199844481488}, "mds3": {"value": 16.107981550597376}, "umap_x": {"value": 10.669895}, "pca2": {"value": -12.893657431106302}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.959715080851284}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.914858}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["T6235C", "G10835A", "T25673C"]}}}, {"name": "NODE_0001053", "node_attrs": {"div": 16, "num_date": {"value": 2020.8175265957818, "confidence": [2020.7417886191802, 2020.8547539745932]}}, "branch_attrs": {"mutations": {"nuc": ["C6636T", "C29272T"]}}, "children": [{"name": "Japan/Donner413/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.1219178082192, "confidence": [2021.1219178082192, 2021.1219178082192]}, "tsne_y": {"value": -5.515716868027382}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.993499726073844}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.921735283952161}, "tsne_x": {"value": -14.618859410490018}, "mds3": {"value": 17.738357817161702}, "umap_x": {"value": 9.880819}, "pca2": {"value": -0.246375319174471}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.465474091445357}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.059733}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2121T", "G21746A", "C22377T", "C22450T", "T23389A", "T23713C"], "S": ["V62I", "P272L"]}, "labels": {"aa": "S: V62I, P272L"}}}, {"name": "NODE_0001054", "node_attrs": {"div": 17, "num_date": {"value": 2020.8647540983607, "confidence": [2020.8276906515266, 2020.8647540983607]}}, "branch_attrs": {"mutations": {"nuc": ["C16887T"]}}, "children": [{"name": "JPN/HiroFH22/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8647540983607, "confidence": [2020.8647540983607, 2020.8647540983607]}, "tsne_y": {"value": -5.664047213476146}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.18656979550813}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -3.9609058785167854}, "tsne_x": {"value": -14.6246938916164}, "mds3": {"value": 16.278833971163426}, "umap_x": {"value": 10.681219}, "pca2": {"value": -0.242239031596369}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.6323040746051465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.926016}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {}}}, {"name": "JPN/HiroHC227c/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.905737704918, "confidence": [2020.905737704918, 2020.905737704918]}, "tsne_y": {"value": -5.663874173775016}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.660279032488406}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.4483529193338445}, "tsne_x": {"value": -14.622306514520494}, "mds3": {"value": 10.950001522870515}, "umap_x": {"value": 10.815608}, "pca2": {"value": -9.845943321336632}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.70911594033638}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.126866}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001059", "node_attrs": {"div": 12, "num_date": {"value": 2020.5891066891115, "confidence": [2020.4801473383116, 2020.7196527229876]}}, "branch_attrs": {"mutations": {"nuc": ["C8917T"]}}, "children": [{"name": "NODE_0001258", "node_attrs": {"div": 12, "num_date": {"value": 2020.632719754085, "confidence": [2020.4810169149919, 2020.7220232562022]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001061", "node_attrs": {"div": 15, "num_date": {"value": 2020.733606557377, "confidence": [2020.7004721772728, 2020.733606557377]}}, "branch_attrs": {"mutations": {"nuc": ["G2436A", "G21796T", "G25500T"], "S": ["R78S"]}, "labels": {"aa": "S: R78S"}}, "children": [{"name": "Japan/Donner210/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.7363387978141, "confidence": [2020.7363387978141, 2020.7363387978141]}, "tsne_y": {"value": -6.500113543511362}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.370490465340076}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -3.917784928304166}, "tsne_x": {"value": -14.843416685797315}, "mds3": {"value": 13.072948902044496}, "umap_x": {"value": 11.168646}, "pca2": {"value": -0.2348521406805762}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.7703560568561444}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.485794}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {}}}, {"name": "Japan/Donner209/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_y": {"value": -6.501061563908888}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.89302117690476}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.917784928304166}, "tsne_x": {"value": -14.839115490053327}, "mds3": {"value": 10.80421432369806}, "umap_x": {"value": 11.300976}, "pca2": {"value": -0.2348521406805762}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.697502793580556}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.626356}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001260", "node_attrs": {"div": 12, "num_date": {"value": 2020.6838127033172, "confidence": [2020.4795758884125, 2020.7802336456655]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner249/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_y": {"value": -6.611435447698644}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.5020287244062875}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.953998089705818}, "tsne_x": {"value": -14.886225159975211}, "mds3": {"value": 15.95705503212563}, "umap_x": {"value": 10.647376}, "pca2": {"value": -0.2365569470435204}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.502266622440693}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.88937}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C900T", "C8016T", "G8602T", "A13563G", "C18877T", "G19072T"]}}}, {"name": "Japan/Donner470/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.8319672131147, "confidence": [2020.8319672131147, 2020.8319672131147]}, "tsne_y": {"value": -6.521831161729078}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Hokkaido"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.822031326957635}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.907241669346457}, "tsne_x": {"value": -14.793362431757446}, "mds3": {"value": 7.308105307619508}, "umap_x": {"value": 11.890863}, "pca2": {"value": -0.2343599269347918}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.2149750690162109}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.218999}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C25571T", "A27675C"]}}}]}]}, {"name": "NODE_0001063", "node_attrs": {"div": 13, "num_date": {"value": 2020.6351340727836, "confidence": [2020.5247071571698, 2020.7552334974864]}}, "branch_attrs": {"mutations": {"nuc": ["C29679T"]}}, "children": [{"name": "NODE_0001064", "node_attrs": {"div": 18, "num_date": {"value": 2020.8210382513662, "confidence": [2020.7841900379008, 2020.8210382513662]}}, "branch_attrs": {"mutations": {"nuc": ["G5036A", "C7321T", "C10156T", "G16288T", "C20946T"]}}, "children": [{"name": "LC655356", "node_attrs": {"div": 19, "num_date": {"value": 2021.0698630136985, "confidence": [2021.0698630136985, 2021.0698630136985]}, "tsne_y": {"value": -6.5119916861247535}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanagawa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -3.346887519769313}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.880849228526726}, "tsne_x": {"value": -15.22850708789927}, "mds3": {"value": 18.45331150867994}, "umap_x": {"value": 10.415478}, "pca2": {"value": -13.024472979770737}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.170015409542259}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.617241}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C11379T"]}}}, {"name": "Japan/Donner104/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8210382513662, "confidence": [2020.8210382513662, 2020.8210382513662]}, "tsne_y": {"value": -6.512453268077291}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.992647131313859}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9573359631612406}, "tsne_x": {"value": -15.190585599995185}, "mds3": {"value": 12.09491351490154}, "umap_x": {"value": 10.708409}, "pca2": {"value": -0.2351901437741446}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.667901649427549}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.951461}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001269", "node_attrs": {"div": 13, "num_date": {"value": 2020.6742037767326, "confidence": [2020.5231043261078, 2020.7549132869478]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/Donner462/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.782786885246, "confidence": [2020.782786885246, 2020.782786885246]}, "tsne_y": {"value": -6.554115110860892}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Hokkaido"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.181048595993015}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9676504953667857}, "tsne_x": {"value": -14.959913930626357}, "mds3": {"value": 8.818607697051345}, "umap_x": {"value": 11.313515}, "pca2": {"value": -0.1766258029662293}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.02331122468432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.661577}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T16062C", "G26428T", "C29831T"]}}}, {"name": "NODE_0001066", "node_attrs": {"div": 14, "num_date": {"value": 2020.7144393170333, "confidence": [2020.5762711251036, 2020.8228073759676]}}, "branch_attrs": {"mutations": {"nuc": ["C12049T"]}}, "children": [{"name": "Japan/Donner248/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_y": {"value": -6.618875353747419}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.180700330242606}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.964437981514274}, "tsne_x": {"value": -15.2795447123916}, "mds3": {"value": 15.39765464113679}, "umap_x": {"value": 9.938002}, "pca2": {"value": -0.2112697569605535}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.256682467223303}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.068023}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "C6380T", "T17142C", "C17502T", "C21638T", "G22241A", "G23587T", "C29353T"], "S": ["P26S", "V227I", "Q675H"]}, "labels": {"aa": "S: P26S, V227I, Q675H"}}}, {"name": "NODE_0001067", "node_attrs": {"div": 17, "num_date": {"value": 2020.8942758632056, "confidence": [2020.779760052013, 2020.9428617757333]}}, "branch_attrs": {"mutations": {"nuc": ["C5365T", "G20560T", "C20703T"]}}, "children": [{"name": "Japan/Donner310/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.954918032787, "confidence": [2020.954918032787, 2020.954918032787]}, "tsne_y": {"value": -6.543089787668708}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.4823475936680137}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -0.9879275717325996}, "tsne_x": {"value": -15.18583077693522}, "mds3": {"value": 14.722549562734107}, "umap_x": {"value": 10.660965}, "pca2": {"value": 0.4211931598164587}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.449813577321032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.9419155}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "Japan/Donner242/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_y": {"value": -6.544439253976612}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.214"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.214"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.967957839545432}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -1.0050698970522698}, "tsne_x": {"value": -15.222579635381503}, "mds3": {"value": 10.886676809956924}, "umap_x": {"value": 10.567731}, "pca2": {"value": 0.4156048780875531}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 6.0976896634289375}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.748354}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G4255T", "C21859T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001272", "node_attrs": {"div": 7, "num_date": {"value": 2020.1673850906473, "confidence": [2020.1321267276526, 2020.360022299291]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000967", "node_attrs": {"div": 8, "num_date": {"value": 2020.3268227895485, "confidence": [2020.238007903487, 2020.517929740131]}}, "branch_attrs": {"mutations": {"nuc": ["G25563T"]}}, "children": [{"name": "ARM/UW-ARM29/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6352459016393, "confidence": [2020.6352459016393, 2020.6352459016393]}, "tsne_y": {"value": -6.88269419214919}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.533"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Armenia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.6131446900352272}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.453056248136295}, "tsne_x": {"value": -11.446032421653095}, "mds3": {"value": 10.199548931027923}, "umap_x": {"value": 11.400556}, "pca2": {"value": 31.15152492502376}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.247621811790209}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.711096}, "country": {"value": "Armenia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1181T", "C2023T", "C2939T", "G3304T", "C6936T", "G18106T", "C28826T"]}}}, {"name": "GHA/WACCBIP_nCoV_GS119/2021", "node_attrs": {"div": 18, "num_date": {"value": 2021.017808219178, "confidence": [2021.017808219178, 2021.017808219178]}, "tsne_y": {"value": -8.036276691242621}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.533"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.703239999241205}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.854635563072347}, "tsne_x": {"value": -9.875012520667404}, "mds3": {"value": 15.739287446291312}, "umap_x": {"value": 10.78549}, "pca2": {"value": -0.2355014738500254}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.643335889862117}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.036669}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1059T", "G2210T", "T10153C", "T10285G", "T13389C", "G18379A", "A23064C", "C25904T", "T28723C", "G28803A"], "S": ["N501T"]}, "labels": {"aa": "S: N501T"}}}]}, {"name": "NODE_0001163", "node_attrs": {"div": 8, "num_date": {"value": 2020.23881912515, "confidence": [2020.1351547786578, 2020.374801186244]}}, "branch_attrs": {"mutations": {"nuc": ["G25088T"], "S": ["V1176F"]}, "labels": {"aa": "S: V1176F"}}, "children": [{"name": "NODE_0001275", "node_attrs": {"div": 8, "num_date": {"value": 2020.3264489179157, "confidence": [2020.1501970426282, 2020.4710682608363]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/HRMS_1587/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.6489071038252, "confidence": [2020.6489071038252, 2020.6489071038252]}, "tsne_y": {"value": -8.915332862143043}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.429621938128992}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.164956287377487}, "tsne_x": {"value": -13.952959595338484}, "mds3": {"value": 10.522307440506706}, "umap_x": {"value": 11.661695}, "pca2": {"value": -19.174852386823897}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.821149554839437}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.960797}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "A3021G", "G6694A", "T15039C", "G18985T"]}}}, {"name": "NODE_0001164", "node_attrs": {"div": 9, "num_date": {"value": 2020.3645032243755, "confidence": [2020.2533114810308, 2020.5080333987314]}}, "branch_attrs": {"mutations": {"nuc": ["C12053T"]}}, "children": [{"name": "NODE_0001167", "node_attrs": {"div": 10, "num_date": {"value": 2020.5169169821065, "confidence": [2020.3179957034424, 2020.6746113654197]}}, "branch_attrs": {"mutations": {"nuc": ["G19891T"]}}, "children": [{"name": "PRY/202102802_631658/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_y": {"value": -9.18860592904727}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.348260077939962}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.6575185614214}, "tsne_x": {"value": -14.550251541898028}, "mds3": {"value": 22.959987604164475}, "umap_x": {"value": 9.717251}, "pca2": {"value": -12.860753023969412}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.618386516760597}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.8815}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3081G", "T4823C", "C6539T", "T7826C", "C13225T", "C17518T", "T21992-", "A21993-", "T21994-", "G22104T", "G22299C", "C27925T", "C28310T", "T28340C", "A29369-", "C29370-", "A29371-", "G29779A"], "S": ["Y144-", "G181V", "R246T"]}, "labels": {"aa": "S: Y144-, G181V, R246T"}}}, {"name": "BRA/HRMS_1132/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_y": {"value": -8.950522909913078}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.9381010460970447}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.165803265713404}, "tsne_x": {"value": -14.288049612362013}, "mds3": {"value": 11.741911968412724}, "umap_x": {"value": 11.411848}, "pca2": {"value": -19.166144326833244}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.831010648730627}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.722083}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5526T", "C8293T", "G16935T", "A28050G"]}}}]}, {"name": "NODE_0001278", "node_attrs": {"div": 9, "num_date": {"value": 2020.3692590846063, "confidence": [2020.2612837701101, 2020.511919971948]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001279", "node_attrs": {"div": 9, "num_date": {"value": 2020.4100337449788, "confidence": [2020.2609255989048, 2020.5157320800975]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/WOR12903A599_202103295_2-4710510/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6024590163934, "confidence": [2020.6024590163934, 2020.6024590163934]}, "tsne_y": {"value": -9.046748503060051}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.286464800348013}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.1464325935727615}, "tsne_x": {"value": -14.507018710623752}, "mds3": {"value": 14.806409422281362}, "umap_x": {"value": 10.745824}, "pca2": {"value": -9.234470709943531}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.323954889354087}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.063383}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1392T", "G2441A", "C5974T", "G11083T", "C20132T", "C25701T", "C28011T", "G29543T"]}}}, {"name": "NODE_0001280", "node_attrs": {"div": 9, "num_date": {"value": 2020.4548830686538, "confidence": [2020.228386706544, 2020.692543336575]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001170", "node_attrs": {"div": 15, "num_date": {"value": 2020.8191802909205, "confidence": [2020.685749580559, 2020.8710641659502]}}, "branch_attrs": {"mutations": {"nuc": ["C10537T", "C12076T", "T22020C", "G23628T", "C25728T", "G26063T"], "S": ["M153T", "S689I"]}, "labels": {"aa": "S: M153T, S689I"}}, "children": [{"name": "Brazil/UW20112095414/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.886612021858, "confidence": [2020.886612021858, 2020.886612021858]}, "tsne_y": {"value": -9.316921523592487}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.1167010813029552}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.053508848083077}, "tsne_x": {"value": -15.459551465937388}, "mds3": {"value": 7.574352655832275}, "umap_x": {"value": 10.722237}, "pca2": {"value": 30.43376074973024}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 12.136923354192922}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.049987}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T9640C", "T11233A", "G20489T"]}}}, {"name": "Brazil/UW21010835080/2021", "node_attrs": {"div": 16, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_y": {"value": -9.302429569567911}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.3244749885909135}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.05815224357891}, "tsne_x": {"value": -15.411332628380304}, "mds3": {"value": 6.62567153200791}, "umap_x": {"value": 11.411775}, "pca2": {"value": 30.4399419870799}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 4.771721563986312}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.768492}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G28233T"]}}}]}, {"name": "NODE_0001282", "node_attrs": {"div": 9, "num_date": {"value": 2020.5015369459802, "confidence": [2020.2270040411177, 2020.6945182701631]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/UW20112668532/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.9030054644809, "confidence": [2020.9030054644809, 2020.9030054644809]}, "tsne_y": {"value": -9.657964051390096}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.456530694616797}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.050599238955845}, "tsne_x": {"value": -14.458611833708288}, "mds3": {"value": 10.999437064624322}, "umap_x": {"value": 9.895855}, "pca2": {"value": 30.438524208663004}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.938478803095816}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.028518}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T2122C", "C4345T", "A10323G", "A10872T", "A10874G", "C14184T", "C15857T", "G22026A", "C23248T", "A23570G", "A23889G", "T27900-", "T27901-", "T27902-", "C27903-", "C28269A", "C28849T"], "S": ["S155N", "I670V", "K776R"]}, "labels": {"aa": "S: S155N, I670V, K776R"}}}, {"name": "NODE_0001283", "node_attrs": {"div": 9, "num_date": {"value": 2020.5448730460794, "confidence": [2020.22592448276, 2020.7041911689132]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/WOR12903A668_202103302_2-4710629/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.9959016393443, "confidence": [2020.9959016393443, 2020.9959016393443]}, "tsne_y": {"value": -10.447415069296785}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.395633107226454}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.00541944384317}, "tsne_x": {"value": -13.495491114353811}, "mds3": {"value": 14.336579247650024}, "umap_x": {"value": 9.734259}, "pca2": {"value": -10.323482439174011}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.90608253573333}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.898986}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G701T", "G1439T", "G1599T", "T5929C", "G24348T", "G24620T", "A24679G", "G25621A", "C26600A", "C26895T", "T27796C", "G28851T", "G29688T", "C29836T", "C29838T"], "S": ["S929I", "A1020S"]}, "labels": {"aa": "S: S929I, A1020S"}}}, {"name": "BRA/HUMAP_290/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.9521857923498, "confidence": [2020.9521857923498, 2020.9521857923498]}, "tsne_y": {"value": -8.813146282138925}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.575385910298136}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.175498619555343}, "tsne_x": {"value": -14.393216894045398}, "mds3": {"value": 12.642898079649488}, "umap_x": {"value": 11.17244}, "pca2": {"value": -19.19098427077215}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.2900429045478594}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.487723}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G4255A", "C9733T", "C16208T", "G21641T", "C23613T", "G28077A"], "S": ["A27S", "A684V"]}, "labels": {"aa": "S: A27S, A684V"}}}]}]}]}]}, {"name": "NODE_0001172", "node_attrs": {"div": 17, "num_date": {"value": 2020.5140414083562, "confidence": [2020.4667259103844, 2020.5604430155697]}}, "branch_attrs": {"mutations": {"nuc": ["C100T", "T10667G", "C11824T", "A12964G", "G23012A", "C28253T", "G28628T", "G28975T"], "S": ["E484K"]}, "labels": {"aa": "S: E484K"}}, "children": [{"name": "NODE_0001180", "node_attrs": {"div": 19, "num_date": {"value": 2020.5456091021724, "confidence": [2020.5082377922797, 2020.5762745148547]}}, "branch_attrs": {"mutations": {"nuc": ["G21123T", "C27684T"]}}, "children": [{"name": "NODE_0001286", "node_attrs": {"div": 19, "num_date": {"value": 2020.7014457521916, "confidence": [2020.3993995933731, 2020.9688917715907]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102865_29986/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_y": {"value": -2.462697031841126}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -5.321511548060849}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.910734583980475}, "tsne_x": {"value": -14.409442849507844}, "mds3": {"value": 19.566099385961863}, "umap_x": {"value": 9.718877}, "pca2": {"value": -13.351761441486374}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 12.053012192209552}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.812361}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A2406G", "C5339T", "G16917T", "T27901C"]}}}, {"name": "PRY/202102893_57340/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.2013698630137, "confidence": [2021.2013698630137, 2021.2013698630137]}, "tsne_y": {"value": -2.3535133036036564}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.25700934200222}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.963724844317917}, "tsne_x": {"value": -14.085116070984029}, "mds3": {"value": 13.542563885934092}, "umap_x": {"value": 9.19004}, "pca2": {"value": -8.487939569986246}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 15.168275176745848}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.332443}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2388T", "C5312T", "T13644C", "A13904G", "C14184T", "C14724T", "G21800T", "A24942G", "G29402T"], "S": ["D80Y", "D1127G"]}, "labels": {"aa": "S: D80Y, D1127G"}}}]}, {"name": "NODE_0001182", "node_attrs": {"div": 20, "num_date": {"value": 2020.5633808069758, "confidence": [2020.5335049297964, 2020.5787974846962]}}, "branch_attrs": {"mutations": {"nuc": ["C29754T"]}}, "children": [{"name": "NODE_0001205", "node_attrs": {"div": 20, "num_date": {"value": 2020.5769205334946, "confidence": [2020.5363499036405, 2020.6112360394893]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/HUMAP_959/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.6379781420765, "confidence": [2020.6379781420765, 2020.6379781420765]}, "tsne_y": {"value": -2.46003023026446}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.8670546713577908}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.174147051325663}, "tsne_x": {"value": -14.453079899663765}, "mds3": {"value": 16.138311136927207}, "umap_x": {"value": 9.871193}, "pca2": {"value": -19.08483934049332}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 12.8975082417696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.985133}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G17523T", "C21622T"]}}}, {"name": "BRA/HRMS_1699/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.6762295081967, "confidence": [2020.6762295081967, 2020.6762295081967]}, "tsne_y": {"value": -2.4599296067688807}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.8448148034681164}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.176331410040955}, "tsne_x": {"value": -14.453401789587584}, "mds3": {"value": 15.35681023192928}, "umap_x": {"value": 9.873475}, "pca2": {"value": -19.08500862785099}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 12.69998885385338}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.96372}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G8861A", "C27393T"]}}}]}, {"name": "NODE_0001184", "node_attrs": {"div": 21, "num_date": {"value": 2020.5799417943313, "confidence": [2020.5565636496383, 2020.5887978142077]}}, "branch_attrs": {"mutations": {"nuc": ["T27901C"]}}, "children": [{"name": "BRA/HRMS_1345/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5887978142077, 2020.5887978142077]}, "tsne_y": {"value": -2.460003680668137}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.7511703373687931}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.176570923890004}, "tsne_x": {"value": -14.45137922666076}, "mds3": {"value": 16.15990684330057}, "umap_x": {"value": 9.810529}, "pca2": {"value": -19.08720438435403}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 12.820471670952683}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.903611}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A14513G"]}}}, {"name": "NODE_0001290", "node_attrs": {"div": 21, "num_date": {"value": 2020.5892167227073, "confidence": [2020.5573969814877, 2020.6616200934748]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Peru/PE-LMA-UW21012673102/2021", "node_attrs": {"div": 23, "num_date": {"value": 2021.0698630136985, "confidence": [2021.0698630136985, 2021.0698630136985]}, "tsne_y": {"value": -2.466098709349736}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.165929748753708}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.059959827543999}, "tsne_x": {"value": -14.4346772586426}, "mds3": {"value": 14.520202433542048}, "umap_x": {"value": 9.973398}, "pca2": {"value": 30.45343672761542}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 12.830854059899895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.086423}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C18486G", "C26789T"]}}}, {"name": "NODE_0001186", "node_attrs": {"div": 22, "num_date": {"value": 2020.6394180446566, "confidence": [2020.5885810706507, 2020.6788824362504]}}, "branch_attrs": {"mutations": {"nuc": ["A28254C"]}}, "children": [{"name": "BRA/HRMS_1086/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.6898907103825, "confidence": [2020.6898907103825, 2020.6898907103825]}, "tsne_y": {"value": -2.462446077787372}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.8292412136359744}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.188765149774047}, "tsne_x": {"value": -14.445681947429394}, "mds3": {"value": 16.00884460316539}, "umap_x": {"value": 9.770381}, "pca2": {"value": -19.03863751809952}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 13.28030595191899}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.872992}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "G23984A", "C27901T"], "S": ["D808N"]}, "labels": {"aa": "S: D808N"}}}, {"name": "BRA/HUMAP_1277/2020", "node_attrs": {"div": 23, "num_date": {"value": 2020.938524590164, "confidence": [2020.938524590164, 2020.938524590164]}, "tsne_y": {"value": -2.458990861817417}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.096699377147286}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.174357043474595}, "tsne_x": {"value": -14.468896938065496}, "mds3": {"value": 15.091077750524311}, "umap_x": {"value": 9.823696}, "pca2": {"value": -19.07563285175984}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 13.457008052317}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.91853}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C8772T"]}}}]}]}]}]}]}, {"name": "NODE_0001292", "node_attrs": {"div": 17, "num_date": {"value": 2020.61812387071, "confidence": [2020.4319920716323, 2020.8105254133009]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001293", "node_attrs": {"div": 17, "num_date": {"value": 2020.7593909566453, "confidence": [2020.59971743486, 2020.909305501772]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001294", "node_attrs": {"div": 17, "num_date": {"value": 2020.834077219124, "confidence": [2020.6178601459867, 2020.9522937801332]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/UW20122839843/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.99043715847, "confidence": [2020.99043715847, 2020.99043715847]}, "tsne_y": {"value": -2.485890608045747}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.184535491963316}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.071092747265997}, "tsne_x": {"value": -14.481023651803282}, "mds3": {"value": 13.895367718960062}, "umap_x": {"value": 10.454955}, "pca2": {"value": 30.45655802805524}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 9.7879999157474}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.739238}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4331T", "G11321A", "A13037T"]}}}, {"name": "Brazil/UW20122384976/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.9767759562842, "confidence": [2020.9767759562842, 2020.9767759562842]}, "tsne_y": {"value": -2.488508272409629}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.4307400470877045}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -8.070539325167669}, "tsne_x": {"value": -14.486418429770586}, "mds3": {"value": 9.275410335685065}, "umap_x": {"value": 10.941618}, "pca2": {"value": 30.465787863818868}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 9.171555258014754}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.213583}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["G28233T"]}}}]}, {"name": "NODE_0001295", "node_attrs": {"div": 17, "num_date": {"value": 2020.8009358993884, "confidence": [2020.6085078505773, 2020.9193989071039]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/UW20120288602/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.9193989071039, "confidence": [2020.9193989071039, 2020.9193989071039]}, "tsne_y": {"value": -2.485727063392163}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.670841332437998}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.070835208973005}, "tsne_x": {"value": -14.48072291240411}, "mds3": {"value": 14.528368455387197}, "umap_x": {"value": 10.37801}, "pca2": {"value": 30.45539882357666}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 8.513328336711444}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.607367}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1111A", "C10279T", "G19872T"]}}}, {"name": "NODE_0001297", "node_attrs": {"div": 17, "num_date": {"value": 2020.8233204852033, "confidence": [2020.6169743904372, 2020.9264127773156]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001298", "node_attrs": {"div": 17, "num_date": {"value": 2020.8400499998627, "confidence": [2020.6230092423623, 2020.9387334098458]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/UW20122062150/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.9685792349726, "confidence": [2020.9685792349726, 2020.9685792349726]}, "tsne_y": {"value": -2.4893158045326214}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.529994216784657}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.06663296029015}, "tsne_x": {"value": -14.480138814500288}, "mds3": {"value": 7.855360648465787}, "umap_x": {"value": 10.797344}, "pca2": {"value": 30.45871536326219}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 10.394526905617866}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.110572}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5239T", "C6781T", "A20486G"]}}}, {"name": "Brazil/BR-MG-UW21010743891/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.017808219178, "confidence": [2021.017808219178, 2021.017808219178]}, "tsne_y": {"value": -2.4887320552353045}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.5927377734449792}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.070488685506417}, "tsne_x": {"value": -14.474344705606434}, "mds3": {"value": 13.11021876038466}, "umap_x": {"value": 10.323353}, "pca2": {"value": 30.45638412980972}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 12.139284256028162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.5347395}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5622A", "C7390T", "T15321C", "C28957T"]}}}]}, {"name": "NODE_0001300", "node_attrs": {"div": 17, "num_date": {"value": 2020.8345135354048, "confidence": [2020.6227736931703, 2020.939497628417]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/BR-SP-UW21020213582/2021", "node_attrs": {"div": 19, "num_date": {"value": 2021.0890410958905, "confidence": [2021.0890410958905, 2021.0890410958905]}, "tsne_y": {"value": -2.4861314137299035}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.719081100633563}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.8179534589077795}, "tsne_x": {"value": -14.484242597286158}, "mds3": {"value": 10.570625646035614}, "umap_x": {"value": 10.556906}, "pca2": {"value": 30.534755775716032}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 10.39201566932321}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.955034}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3340T", "C12459T"]}}}, {"name": "NODE_0001301", "node_attrs": {"div": 17, "num_date": {"value": 2020.8579860841594, "confidence": [2020.622266703575, 2020.9434934387866]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102809_631699/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_y": {"value": -2.642453032408365}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.29027655604955}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.835555996054888}, "tsne_x": {"value": -14.21031852431836}, "mds3": {"value": 15.405849164155944}, "umap_x": {"value": 9.480287}, "pca2": {"value": -7.83681572119183}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 18.53436619216342}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.620545}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G376T", "A1521G", "C3261T", "G3893A", "T7666C", "T13417C", "G24098T", "C26124A", "T28735C"], "S": ["A846S"]}, "labels": {"aa": "S: A846S"}}}, {"name": "PRY/202102848_29881/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_y": {"value": -2.576544593011469}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 9.054885491100633}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.065696691153637}, "tsne_x": {"value": -14.387810695794618}, "mds3": {"value": 15.827064048339489}, "umap_x": {"value": 9.69745}, "pca2": {"value": -8.616840451714745}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 14.012803640284082}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.771415}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G94T", "G2635A", "C6255T", "T10429C", "G19891T", "G24620T", "T28705C", "G29422T"], "S": ["A1020S"]}, "labels": {"aa": "S: A1020S"}}}]}]}]}]}]}, {"name": "NODE_0001303", "node_attrs": {"div": 17, "num_date": {"value": 2020.6341696032982, "confidence": [2020.4416981855413, 2020.815854559451]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001177", "node_attrs": {"div": 21, "num_date": {"value": 2020.7795515992127, "confidence": [2020.6392435689102, 2020.8616814193333]}}, "branch_attrs": {"mutations": {"nuc": ["C21530G", "T21534A", "G21535T", "A21536C"]}}, "children": [{"name": "Brazil/UW20111999550/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.8838797814208, "confidence": [2020.8838797814208, 2020.8838797814208]}, "tsne_y": {"value": -2.524506608378884}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.251747717560739}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.075267508480515}, "tsne_x": {"value": -14.471490271849849}, "mds3": {"value": 18.818537882359987}, "umap_x": {"value": 9.771222}, "pca2": {"value": 30.49752750454864}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 11.833279489236851}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.851368}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5239T", "C6347T", "C6781T"]}}}, {"name": "Brazil/BR-PR-UW20112176771/2020", "node_attrs": {"div": 25, "num_date": {"value": 2020.889344262295, "confidence": [2020.889344262295, 2020.889344262295]}, "tsne_y": {"value": -2.511723704468784}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.5000709831049}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.076749540352356}, "tsne_x": {"value": -14.532613810913755}, "mds3": {"value": 15.163611148279765}, "umap_x": {"value": 9.747445}, "pca2": {"value": 30.49519178958766}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 15.882267272307947}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.815212}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T3766C", "A27237G", "T28245C", "C28892T"]}}}]}, {"name": "NODE_0001190", "node_attrs": {"div": 18, "num_date": {"value": 2020.754039480308, "confidence": [2020.520766943506, 2020.8516266611655]}}, "branch_attrs": {"mutations": {"nuc": ["T3766C"]}}, "children": [{"name": "NODE_0001197", "node_attrs": {"div": 19, "num_date": {"value": 2020.8060563712213, "confidence": [2020.5623090502097, 2020.9077934467587]}}, "branch_attrs": {"mutations": {"nuc": ["C29754T"]}}, "children": [{"name": "PRY/202102847_29879/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_y": {"value": -2.4408090094537176}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.9374151158020565}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.100108464422524}, "tsne_x": {"value": -14.602480031910302}, "mds3": {"value": 22.937402956655927}, "umap_x": {"value": 9.427757}, "pca2": {"value": -8.651797978278308}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 13.929110918947757}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.560901}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6347T", "C13647T", "C17002T", "C17410T", "C20762T", "C22916A", "G23761A"], "S": ["L452M"]}, "labels": {"aa": "S: L452M"}}}, {"name": "BRA/PR-HF105/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.1794520547944, "confidence": [2021.1794520547944, 2021.1794520547944]}, "tsne_y": {"value": -1.964506844417953}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paran\u00e1"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.13952763641015}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.089535477113957}, "tsne_x": {"value": -14.61637730015083}, "mds3": {"value": 11.914027394222526}, "umap_x": {"value": 9.021416}, "pca2": {"value": 10.441400970996654}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 22.8958896570444}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.92071}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "C1009T", "A6403G", "G6589A", "G8548A", "G17721T", "C20703T", "G22100C", "G22801T", "C25465T", "A25591G", "C26164T"], "S": ["E180Q"]}, "labels": {"aa": "S: E180Q"}}}]}, {"name": "NODE_0001194", "node_attrs": {"div": 20, "num_date": {"value": 2020.8198991482343, "confidence": [2020.736809509385, 2020.8647540983607]}}, "branch_attrs": {"mutations": {"nuc": ["T9702G", "C9711T"]}}, "children": [{"name": "Brazil/UW20111273300/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.8647540983607, "confidence": [2020.8647540983607, 2020.8647540983607]}, "tsne_y": {"value": -2.468554742590793}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.131520335496973}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.07300304199899}, "tsne_x": {"value": -14.534445901304371}, "mds3": {"value": 16.506573236922357}, "umap_x": {"value": 9.871607}, "pca2": {"value": 30.456310323651216}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 10.755150583458567}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.963338}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T10813C", "G14131T"]}}}, {"name": "NODE_0001195", "node_attrs": {"div": 21, "num_date": {"value": 2021.1080874938002, "confidence": [2020.9549557694597, 2021.1752463788052]}}, "branch_attrs": {"mutations": {"nuc": ["C24068G"], "S": ["Q836E"]}, "labels": {"aa": "S: Q836E"}}, "children": [{"name": "PRY/202102938_62236/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.217808219178, "confidence": [2021.217808219178, 2021.217808219178]}, "tsne_y": {"value": -2.464781000397107}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.063448726774831}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.356295204948132}, "tsne_x": {"value": -14.545845200189945}, "mds3": {"value": 17.944347715062932}, "umap_x": {"value": 9.813488}, "pca2": {"value": -9.898833507149526}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 11.997874393516522}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.883086}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2862T"]}}}, {"name": "PRY/202102932_61958/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.2150684931507, "confidence": [2021.2150684931507, 2021.2150684931507]}, "tsne_y": {"value": -2.4631439398876034}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.2507831529208197}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.8888908624067255}, "tsne_x": {"value": -14.558773795100572}, "mds3": {"value": 19.19047626949774}, "umap_x": {"value": 9.661606}, "pca2": {"value": -9.81057435732199}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 13.90218808238768}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.744814}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5770T", "G27047C", "C29627T"]}}}]}]}, {"name": "NODE_0001310", "node_attrs": {"div": 18, "num_date": {"value": 2020.7814426250675, "confidence": [2020.5303016996506, 2020.9059966807522]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102836_28342/2021", "node_attrs": {"div": 22, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_y": {"value": -2.4662749133}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.469704135243111}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.068468451918955}, "tsne_x": {"value": -14.530905551457202}, "mds3": {"value": 12.906637818941622}, "umap_x": {"value": 9.894501}, "pca2": {"value": -8.692827035064731}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 13.739484233224482}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.968089}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C11750T", "C19884T", "G24410C", "G25785T"], "S": ["D950H"]}, "labels": {"aa": "S: D950H"}}}, {"name": "NODE_0001191", "node_attrs": {"div": 23, "num_date": {"value": 2021.0040089630531, "confidence": [2020.9099215638355, 2021.0965071249034]}}, "branch_attrs": {"mutations": {"nuc": ["C2189T", "C8318A", "C8772T", "G17280T", "C27155T"]}}, "children": [{"name": "PRY/202102868_30519/2021", "node_attrs": {"div": 25, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_y": {"value": -2.489359504713162}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.7464533627152844}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.296077394312231}, "tsne_x": {"value": -14.825209183464745}, "mds3": {"value": 20.94642443732549}, "umap_x": {"value": 9.60253}, "pca2": {"value": -9.613932095554537}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 14.071100717627624}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.722963}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G21255C", "T23296C"]}}}, {"name": "NODE_0001192", "node_attrs": {"div": 24, "num_date": {"value": 2021.0491240867425, "confidence": [2020.954023050911, 2021.102267571281]}}, "branch_attrs": {"mutations": {"nuc": ["C835T"]}}, "children": [{"name": "PRY/202102862_29975/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1438356164383, "confidence": [2021.1438356164383, 2021.1438356164383]}, "tsne_y": {"value": -2.4977186760698085}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -20.99122211877221}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.301658676211613}, "tsne_x": {"value": -14.945992611933272}, "mds3": {"value": 14.268838611648166}, "umap_x": {"value": 9.168941}, "pca2": {"value": -9.64351595704004}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 18.301838976033693}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.209095}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C5301T", "C16111A", "C22227T", "C29754T"], "S": ["A222V"]}, "labels": {"aa": "S: A222V"}}}, {"name": "PRY/202102845_29865/2021", "node_attrs": {"div": 27, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_y": {"value": -2.5179318231917813}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "7"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "P.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.5149801152649074}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 0.5618968571455571}, "tsne_x": {"value": -14.96078872721976}, "mds3": {"value": 18.77311275150054}, "umap_x": {"value": 9.486859}, "pca2": {"value": 25.12498554146149}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "6"}, "mds2": {"value": 16.237144730089593}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.602851}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T25228G", "C27476T", "G28851T"]}}}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001199", "node_attrs": {"div": 10, "num_date": {"value": 2020.281372293846, "confidence": [2020.1579003321222, 2020.3870936112287]}}, "branch_attrs": {"mutations": {"nuc": ["A6319G", "T26149C"]}}, "children": [{"name": "NODE_0001200", "node_attrs": {"div": 14, "num_date": {"value": 2020.3647062957873, "confidence": [2020.2876231005712, 2020.3956017969838]}}, "branch_attrs": {"mutations": {"nuc": ["G4146A", "A11782G", "C19018T", "G19656T"]}}, "children": [{"name": "BRA/HRMS_638/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_y": {"value": -11.034639441481795}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -6.572272034992902}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.165595775786755}, "tsne_x": {"value": -14.167897075848572}, "mds3": {"value": 16.481116020290187}, "umap_x": {"value": 10.7580805}, "pca2": {"value": -19.174132815628788}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.6384361138286213}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.0051155}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A10323G", "A12210G", "C20825T"]}}}, {"name": "NODE_0001201", "node_attrs": {"div": 17, "num_date": {"value": 2020.5120860749885, "confidence": [2020.4579999582365, 2020.5368852459017]}}, "branch_attrs": {"mutations": {"nuc": ["C106T", "C9344T", "C20574T"]}}, "children": [{"name": "BRA/HRMS_1251/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.5368852459017, "confidence": [2020.5368852459017, 2020.5368852459017]}, "tsne_y": {"value": -11.104364550448503}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.849504235250019}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.167701273728184}, "tsne_x": {"value": -14.188159180488825}, "mds3": {"value": 16.989410645628674}, "umap_x": {"value": 10.65722}, "pca2": {"value": -19.14661048930684}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.6664476704583207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.906755}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C21707T"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}}, {"name": "BRA/HRMS_1720/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6379781420765, "confidence": [2020.6379781420765, 2020.6379781420765]}, "tsne_y": {"value": -11.103520961807636}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mato Grosso do Sul"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.605869852276753}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -9.167835269802634}, "tsne_x": {"value": -14.188578116194265}, "mds3": {"value": 16.857066632866683}, "umap_x": {"value": 10.744311}, "pca2": {"value": -19.14742430919647}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.556345820704623}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.985439}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["T7645C"]}}}]}]}, {"name": "NODE_0001202", "node_attrs": {"div": 30, "num_date": {"value": 2020.757326727943, "confidence": [2020.616992526665, 2020.8805068542304]}}, "branch_attrs": {"mutations": {"nuc": ["T733C", "C3828T", "A5648C", "A6613G", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "C12778T", "C13860T", "G17259T", "C21621A", "C21638T", "G21974T", "G22132T", "A22812C", "A23063T", "C23525T", "C24642T", "G28167A", "C28512G", "A28877T", "G28878C", "T29834A"], "S": ["T20N", "P26S", "D138Y", "R190S", "K417T", "N501Y", "H655Y", "T1027I"]}, "labels": {"aa": "S: T20N, P26S, D138Y, R190S, K417T, N501Y, H655Y, T1027I"}}, "children": [{"name": "BRA/HCOR_929461/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3465753424657, "confidence": [2021.3465753424657, 2021.3465753424657]}, "tsne_y": {"value": -15.290612303171224}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.001617247935343}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -9.040774540415118}, "tsne_x": {"value": -23.82316219735032}, "mds3": {"value": 32.26338737117136}, "umap_x": {"value": 2.5671024}, "pca2": {"value": -19.09137226123558}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.6117448204624605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3510103}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G487T", "C2675T"]}}}, {"name": "NODE_0001203", "node_attrs": {"div": 33, "num_date": {"value": 2020.8183110057132, "confidence": [2020.6864281839946, 2020.9127338045416]}}, "branch_attrs": {"mutations": {"nuc": ["C2749T", "C21614T", "G23012A"], "S": ["L18F", "E484K"]}, "labels": {"aa": "S: L18F, E484K"}}, "children": [{"name": "BRA/CD1739-P4/2020", "node_attrs": {"div": 44, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_y": {"value": -15.365005597143274}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Amazonas BR"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -18.95540473949153}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.686155354641325}, "tsne_x": {"value": -23.73017043817271}, "mds3": {"value": 39.55546943458676}, "umap_x": {"value": 2.7151508}, "pca2": {"value": -13.29410473365466}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.487116865169656}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.4662137}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["T9C", "T10C", "C15A", "T17A", "C20A", "C7923T", "C10341A", "-11288A", "-11289C", "-11290T", "-11291A", "-11292G", "-11293T", "-11294T", "-11295T", "-11296G", "C22812A", "G28939T", "T29867G", "G29868C"], "S": ["T417K"]}, "labels": {"aa": "S: T417K"}}}, {"name": "NODE_0001234", "node_attrs": {"div": 33, "num_date": {"value": 2020.8388111729519, "confidence": [2020.6684385780427, 2020.9604434140292]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001226", "node_attrs": {"div": 37, "num_date": {"value": 2021.0042076058344, "confidence": [2020.774332363132, 2021.1353644890069]}}, "branch_attrs": {"mutations": {"nuc": ["C21530G", "T21534A", "G21535T", "A21536C"]}}, "children": [{"name": "NODE_0001325", "node_attrs": {"div": 37, "num_date": {"value": 2021.0533692316603, "confidence": [2020.7736131669578, 2021.1383561643836]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/BR-SP-UW21022072474/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.1383561643836, "confidence": [2021.1383561643836, 2021.1383561643836]}, "tsne_y": {"value": -15.207185470120328}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.792403700586583}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.995310174765572}, "tsne_x": {"value": -23.52205357568253}, "mds3": {"value": 35.36977464313077}, "umap_x": {"value": 2.6688344}, "pca2": {"value": 30.92911131460991}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.301588980248695}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.4256263}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C17172T", "C22286T"], "S": ["L242F"]}, "labels": {"aa": "S: L242F"}}}, {"name": "Colombia/CO-ANT-UW21033051083/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.2424657534248, "confidence": [2021.2424657534248, 2021.2424657534248]}, "tsne_y": {"value": -15.22215686638418}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.20598101034037}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.974192946698648}, "tsne_x": {"value": -23.41458124216625}, "mds3": {"value": 36.69048307297027}, "umap_x": {"value": 2.968856}, "pca2": {"value": 30.85378398863902}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 3.670535407860969}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.5837674}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "C6428T", "C8802T", "C18248T"]}}}]}, {"name": "NODE_0001326", "node_attrs": {"div": 37, "num_date": {"value": 2021.0496531319457, "confidence": [2020.770510412953, 2021.1498834963277]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/BR-SP-UW21060220681/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_y": {"value": -15.05118635877352}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -31.58231319609489}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.973297632834074}, "tsne_x": {"value": -23.36132200429397}, "mds3": {"value": 36.78919942178968}, "umap_x": {"value": 3.153232}, "pca2": {"value": 30.855756739314387}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 7.431881398830176}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.722407}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["T11958C", "A16569G", "G23593T", "C25708T", "G25906T", "C29366T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}, {"name": "NODE_0001327", "node_attrs": {"div": 37, "num_date": {"value": 2021.0558598077466, "confidence": [2020.7736105200913, 2021.1550402032062]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Peru/PE-LOR-UW21032668860/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.231506849315, "confidence": [2021.231506849315, 2021.231506849315]}, "tsne_y": {"value": -14.894377563647277}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -30.120899596584657}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.970729612136548}, "tsne_x": {"value": -23.23866307697388}, "mds3": {"value": 44.740662910813846}, "umap_x": {"value": 3.2499995}, "pca2": {"value": 30.8596720751599}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 1.81673210086446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.811432}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["T2698C", "T3592C", "C5934T", "G6367T", "C9561T", "A20425G", "G24368T", "T25461C", "C25844T", "C26176T"], "S": ["D936Y"]}, "labels": {"aa": "S: D936Y"}}}, {"name": "Brazil/BR-RS-UW21031218197/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.1931506849314, "confidence": [2021.1931506849314, 2021.1931506849314]}, "tsne_y": {"value": -15.135314009099869}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -28.481617210819323}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.977969447123244}, "tsne_x": {"value": -23.44188384703689}, "mds3": {"value": 36.04964028108191}, "umap_x": {"value": 2.9313262}, "pca2": {"value": 30.8547867629976}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 7.7296222054041}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.553453}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C13297A", "G21123T", "C24096T", "C25583A"], "S": ["A845V"]}, "labels": {"aa": "S: A845V"}}}]}]}]}, {"name": "NODE_0001246", "node_attrs": {"div": 33, "num_date": {"value": 2020.881382457329, "confidence": [2020.6151596957038, 2020.9710588625214]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001321", "node_attrs": {"div": 33, "num_date": {"value": 2020.9010696360126, "confidence": [2020.6177545583873, 2021.0929073745338]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001220", "node_attrs": {"div": 34, "num_date": {"value": 2021.0025669596696, "confidence": [2020.6869800682086, 2021.1056996880166]}}, "branch_attrs": {"mutations": {"nuc": ["A29834T"]}}, "children": [{"name": "BRA/DF-NXBS2226GENOV70975447698/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4397260273972, "confidence": [2021.4397260273972, 2021.4397260273972]}, "tsne_y": {"value": -15.032627188813445}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.39262001480647}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 17.347392866963297}, "tsne_x": {"value": -23.81129662953356}, "mds3": {"value": 31.70044956528085}, "umap_x": {"value": 2.6197317}, "pca2": {"value": -5.0324048373078}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 14.628275920344567}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3883085}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "C1710T", "C2325T", "C4927T", "C4999T", "C10615T", "T18957C", "A29700G"]}}}, {"name": "NZL/21MV0159/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.176712328767, "confidence": [2021.176712328767, 2021.176712328767]}, "tsne_y": {"value": -15.009720759262327}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.759768084656404}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -3.8570618230503775}, "tsne_x": {"value": -23.75864405475617}, "mds3": {"value": 39.746875772610174}, "umap_x": {"value": 2.952429}, "pca2": {"value": -0.054320635076089}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 1.823978557978912}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.5582495}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G2890T", "G13201T", "T13345G", "C13994T", "C16887T", "C21133A", "C26151A", "G27463T"]}}}]}, {"name": "NODE_0001217", "node_attrs": {"div": 34, "num_date": {"value": 2021.1052999325464, "confidence": [2020.7143449406415, 2021.205154482785]}}, "branch_attrs": {"mutations": {"nuc": ["C9430T"]}}, "children": [{"name": "Brazil/BR-MT-UW21052561664/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3958904109588, "confidence": [2021.3958904109588, 2021.3958904109588]}, "tsne_y": {"value": -15.36389602755249}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.217233170081304}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.966017769840127}, "tsne_x": {"value": -23.75683919483612}, "mds3": {"value": 35.1054862433024}, "umap_x": {"value": 2.6511154}, "pca2": {"value": 30.8139679621451}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 4.114321169556454}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.415001}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C3817A", "G6894T", "C10369T", "C25916T"]}}}, {"name": "BRA/PE-NXBS2401GENOV827660417265/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4205479452055, "confidence": [2021.4205479452055, 2021.4205479452055]}, "tsne_y": {"value": -15.212815615558656}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.20811942961545}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.142290605801116}, "tsne_x": {"value": -24.111323255121413}, "mds3": {"value": 39.11396178854268}, "umap_x": {"value": 3.1234}, "pca2": {"value": -6.407839333276188}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 10.489211696759313}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.7050366}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["A548G", "T1340C", "A2161G", "G2577A", "C12049T", "C18526T", "T21934C", "T25982C"]}}}]}]}, {"name": "NODE_0001250", "node_attrs": {"div": 33, "num_date": {"value": 2020.8944313074608, "confidence": [2020.6176278489063, 2020.982792958978]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001212", "node_attrs": {"div": 34, "num_date": {"value": 2021.0495297506745, "confidence": [2020.664692249671, 2021.186883670814]}}, "branch_attrs": {"mutations": {"nuc": ["G23545T"], "S": ["E661D"]}, "labels": {"aa": "S: E661D"}}, "children": [{"name": "BRA/PR-NVBS4484GENOV827979540586/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.6150684931506, "confidence": [2021.6150684931506, 2021.6150684931506]}, "tsne_y": {"value": -15.46656971064045}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -28.639805938949163}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.750356603089451}, "tsne_x": {"value": -24.199056021502063}, "mds3": {"value": 40.8511561365831}, "umap_x": {"value": 3.1812708}, "pca2": {"value": -8.158907156955896}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.02114757892202}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.748706}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C", "C3702T", "C6633T", "A10323G", "C12473T", "T20084A", "A21555G", "G23587T", "C25413T"], "S": ["Q675H"]}, "labels": {"aa": "S: Q675H"}}}, {"name": "BRA/RJ-NXBS2013GENOV700915144454/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.4424657534246, "confidence": [2021.4424657534246, 2021.4424657534246]}, "tsne_y": {"value": -15.807394914102373}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.81727094813402}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -0.3032365550950694}, "tsne_x": {"value": -23.85663251033143}, "mds3": {"value": 42.27317580554666}, "umap_x": {"value": 3.1812007}, "pca2": {"value": -5.094614983387656}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 9.011047050151936}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.7522464}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C4320T", "C5724T", "C7279T", "C8326T", "G8872T", "C19374T", "C26224T", "G27987T", "G28378T"]}}}]}, {"name": "NODE_0001330", "node_attrs": {"div": 33, "num_date": {"value": 2020.9305623928149, "confidence": [2020.6159580202127, 2020.9842133301368]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001222", "node_attrs": {"div": 34, "num_date": {"value": 2020.9737455751256, "confidence": [2020.712569819219, 2021.0952516147265]}}, "branch_attrs": {"mutations": {"nuc": ["C6627T"]}}, "children": [{"name": "BRA/PR-HF315/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_y": {"value": -15.33699614418436}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Paran\u00e1"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.253372395134697}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.848155471954289}, "tsne_x": {"value": -23.764168167903847}, "mds3": {"value": 36.29004309790827}, "umap_x": {"value": 2.6026466}, "pca2": {"value": 4.073284499639245}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 3.9693065902702496}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.361627}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G2498A", "C11644T", "C13694T", "C16708T"]}}}, {"name": "NODE_0001223", "node_attrs": {"div": 36, "num_date": {"value": 2021.0551791675075, "confidence": [2020.9044766976485, 2021.1109589041096]}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "C6541T"]}}, "children": [{"name": "NZL/21MV0444/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.36301369863, "confidence": [2021.36301369863, 2021.36301369863]}, "tsne_y": {"value": -14.87585605720352}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.50424570043725}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -3.8693925948979495}, "tsne_x": {"value": -23.66828178808127}, "mds3": {"value": 39.8740347770779}, "umap_x": {"value": 3.1322646}, "pca2": {"value": 0.0394537193656498}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 2.2919885071432}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.708026}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C3924T", "A5899G", "T6407A", "C6982T", "T7942C", "T18429C", "G29764T", "A29834T"]}}}, {"name": "VEN/Bol5332/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.1109589041096, "confidence": [2021.1109589041096, 2021.1109589041096]}, "tsne_y": {"value": -15.259763461699286}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Venezuela"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.944180238616696}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.6347701665861685}, "tsne_x": {"value": -23.770877912472105}, "mds3": {"value": 37.20753840195105}, "umap_x": {"value": 2.6354463}, "pca2": {"value": -7.82923949464383}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 8.51512855250153}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.4036007}, "country": {"value": "Venezuela"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C7165T", "T23113C"]}}}]}]}, {"name": "NODE_0001333", "node_attrs": {"div": 33, "num_date": {"value": 2020.9382610189648, "confidence": [2020.64337502923, 2020.992990987977]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001335", "node_attrs": {"div": 33, "num_date": {"value": 2021.0486910499862, "confidence": [2020.6658065027293, 2021.1737919570262]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PRY/202102940_62245/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2150684931507, "confidence": [2021.2150684931507, 2021.2150684931507]}, "tsne_y": {"value": -15.367159558604842}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.973323831757533}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -8.650963685316317}, "tsne_x": {"value": -23.71960710741267}, "mds3": {"value": 35.765210152093154}, "umap_x": {"value": 2.590357}, "pca2": {"value": 7.602016967828998}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.565754782558507}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.368288}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C1473T", "C2062T", "C3177T", "G23417C"], "S": ["E619Q"]}, "labels": {"aa": "S: E619Q"}}}, {"name": "NODE_0001336", "node_attrs": {"div": 33, "num_date": {"value": 2021.1063378882295, "confidence": [2020.6478444176616, 2021.2431563221733]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NXBS763GENOV700905925438/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.3438356164384, "confidence": [2021.3438356164384, 2021.3438356164384]}, "tsne_y": {"value": -15.168383508153712}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.82483652717828}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 19.47075823417928}, "tsne_x": {"value": -23.83392652616196}, "mds3": {"value": 37.00685235289382}, "umap_x": {"value": 2.8212886}, "pca2": {"value": -6.160768049473931}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 9.743333042907045}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.492389}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C593T", "C1593T", "C9223T", "C16329T", "C23758T", "C25549T", "C29835T"]}}}, {"name": "NODE_0001337", "node_attrs": {"div": 33, "num_date": {"value": 2021.134297880644, "confidence": [2021.0347766679818, 2021.2613150445954]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NXBS110GENOV700311081803/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3383561643836, "confidence": [2021.3383561643836, 2021.3383561643836]}, "tsne_y": {"value": -15.384961154983747}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -19.774188565228265}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 23.50278158636027}, "tsne_x": {"value": -23.72655373066791}, "mds3": {"value": 33.012251379659496}, "umap_x": {"value": 2.560429}, "pca2": {"value": -1.88909387893267}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.674040321943136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3380694}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G2894T"]}}}, {"name": "NODE_0001338", "node_attrs": {"div": 33, "num_date": {"value": 2021.1788847935486, "confidence": [2021.0323829160395, 2021.2523193747668]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Chile/CL-RM-UW21040813653/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2671232876712, "confidence": [2021.2671232876712, 2021.2671232876712]}, "tsne_y": {"value": -15.379955528841842}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -20.60960186484493}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.952550915931711}, "tsne_x": {"value": -23.72261155791144}, "mds3": {"value": 34.33978873502244}, "umap_x": {"value": 2.5383017}, "pca2": {"value": 30.814619875569825}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.284738676395252}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.330029}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["A2596G", "C18129T", "C27673T"]}}}, {"name": "NODE_0001339", "node_attrs": {"div": 33, "num_date": {"value": 2021.186823827875, "confidence": [2021.037169712354, 2021.3359330900762]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS611GENOV700905400164/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_y": {"value": -15.362330370184772}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.63903094139924}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.06307928659632}, "tsne_x": {"value": -23.73963091908272}, "mds3": {"value": 34.94371713397309}, "umap_x": {"value": 2.5263765}, "pca2": {"value": -9.0564837012723}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.9268472575914455}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.322824}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C1915T", "A12544G"]}}}, {"name": "NODE_0001340", "node_attrs": {"div": 33, "num_date": {"value": 2021.19734492198, "confidence": [2021.0408422344701, 2021.3385831849068]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CDC-QDX25762981/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4397260273972, "confidence": [2021.4397260273972, 2021.4397260273972]}, "tsne_y": {"value": -15.411854234525894}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -20.455710309021992}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -3.8241011571007824}, "tsne_x": {"value": -23.74002804769717}, "mds3": {"value": 38.22335213275954}, "umap_x": {"value": 2.5948553}, "pca2": {"value": -0.0357212425503743}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.220479770160527}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.4007287}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C6120T", "C7279T", "T21992-", "A21993-", "T21994-", "G22841A", "C29743T"], "S": ["Y144-", "D427N"]}, "labels": {"aa": "S: Y144-, D427N"}}}, {"name": "NODE_0001341", "node_attrs": {"div": 33, "num_date": {"value": 2021.211258435346, "confidence": [2021.042410867177, 2021.3395864038755]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS1276GENOV821437746756/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.445205479452, "confidence": [2021.445205479452, 2021.445205479452]}, "tsne_y": {"value": -15.190513103786108}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.43603011759534}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.753276569863982}, "tsne_x": {"value": -24.01360010646078}, "mds3": {"value": 41.06503185186117}, "umap_x": {"value": 3.0304258}, "pca2": {"value": -8.154160989551931}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.758950866736089}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.605806}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["T3873G", "C12676T", "G19800A", "A21137G", "G25091T", "T25686A", "G25699T", "G27390C"], "S": ["V1177L"]}, "labels": {"aa": "S: V1177L"}}}, {"name": "NODE_0001343", "node_attrs": {"div": 33, "num_date": {"value": 2021.2210599384525, "confidence": [2021.0438951546762, 2021.3426314066903]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PA-NXBS1602GENOV45949487604/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_y": {"value": -15.280618380462633}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.42913285709888}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -3.574305948397101}, "tsne_x": {"value": -23.96575549075858}, "mds3": {"value": 36.09353575398949}, "umap_x": {"value": 3.0105312}, "pca2": {"value": -6.302538804417189}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.099624629115375}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.612884}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C5884T", "C6433T", "C9891T", "G13879A", "C23635T", "A24120G", "G28300T"], "S": ["Q853R"]}, "labels": {"aa": "S: Q853R"}}}, {"name": "NODE_0001345", "node_attrs": {"div": 33, "num_date": {"value": 2021.2395550095596, "confidence": [2021.0474239195394, 2021.346922400463]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001346", "node_attrs": {"div": 33, "num_date": {"value": 2021.2566761057249, "confidence": [2021.0473003819734, 2021.353343585544]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS3331GENOV827825413606/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.5191780821917, "confidence": [2021.5191780821917, 2021.5191780821917]}, "tsne_y": {"value": -14.878487510408172}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.200563528271665}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.725129138867852}, "tsne_x": {"value": -24.06333476656756}, "mds3": {"value": 45.9118657068021}, "umap_x": {"value": 3.3124332}, "pca2": {"value": -7.998087210187004}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.193347945358758}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.8716674}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["T712C", "G713A", "T5559G", "C6310T", "C6558T", "C11173T", "C15222T", "C16887T", "C21302T", "C21304A", "G21305A", "C28432T"]}}}, {"name": "BRA/SP-NXBS146GENOV10032946002/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4945205479453, "confidence": [2021.4945205479453, 2021.4945205479453]}, "tsne_y": {"value": -15.301562118802067}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.07813055080885}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -3.5208421549528284}, "tsne_x": {"value": -23.855629886207712}, "mds3": {"value": 36.06059501953672}, "umap_x": {"value": 2.774578}, "pca2": {"value": -6.459158907322528}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 8.802079680089074}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.4701905}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["A9377G", "T19734A", "C21811T", "G24386T", "T27586C", "T27722C"], "S": ["A942S"]}, "labels": {"aa": "S: A942S"}}}]}, {"name": "NODE_0001347", "node_attrs": {"div": 33, "num_date": {"value": 2021.256974370459, "confidence": [2021.0483662502443, 2021.3649082709007]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NVBS4665GENOV827968845135/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.609589041096, "confidence": [2021.609589041096, 2021.609589041096]}, "tsne_y": {"value": -15.547969285077007}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -19.63202647904538}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -4.334635561848888}, "tsne_x": {"value": -24.07102061361101}, "mds3": {"value": 43.49318768774082}, "umap_x": {"value": 3.02439}, "pca2": {"value": -0.9144652860422068}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 2.461337435569172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.6237016}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C1060T", "T1309C", "G3206T", "C14120T", "A17984G", "A22252C", "C22858T", "C25889T", "G28048T"]}}}, {"name": "NODE_0001348", "node_attrs": {"div": 33, "num_date": {"value": 2021.2853036612184, "confidence": [2021.047047354098, 2021.3776351115855]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/21895623LSS/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.7054794520548, "confidence": [2021.7054794520548, 2021.7054794520548]}, "tsne_y": {"value": -15.270080392076316}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -32.42721957296336}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -4.892535850904994}, "tsne_x": {"value": -24.37475533064123}, "mds3": {"value": 40.70334194202584}, "umap_x": {"value": 3.3093257}, "pca2": {"value": -5.743656292149543}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 12.34968327467887}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.86975}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C854T", "T997C", "C1404T", "C2623T", "A3523G", "C5866T", "C11124T", "C14491T", "A18585G", "T23599G", "G26049T", "C28849T", "G29027T"], "S": ["N679K"]}, "labels": {"aa": "S: N679K"}}}, {"name": "BRA/SP-NVBS4785GENOV827941792012/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_y": {"value": -15.256874920008231}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.08474902905256}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.118070612961035}, "tsne_x": {"value": -24.0365647282109}, "mds3": {"value": 36.88534177978287}, "umap_x": {"value": 3.044728}, "pca2": {"value": -9.052355997693224}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 8.999193024496815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.635642}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C1302T", "C7732T", "G19455A", "G21853A", "T24136C", "C27765T", "T29206C", "C29445T"]}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001231", "node_attrs": {"div": 34, "num_date": {"value": 2020.9655663457359, "confidence": [2020.731463921791, 2020.9951906945676]}}, "branch_attrs": {"mutations": {"nuc": ["T29858A"]}}, "children": [{"name": "NODE_0001352", "node_attrs": {"div": 34, "num_date": {"value": 2020.994577535206, "confidence": [2020.7184815180099, 2021.12382379912]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001232", "node_attrs": {"div": 35, "num_date": {"value": 2021.1078728709558, "confidence": [2020.8684781956745, 2021.1898462247677]}}, "branch_attrs": {"mutations": {"nuc": ["C16887T"]}}, "children": [{"name": "BRA/RJ-NVBS592GENOV890116228036/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_y": {"value": -15.376445438710604}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.2312153454764}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.110567588189534}, "tsne_x": {"value": -23.60917204236779}, "mds3": {"value": 37.12185132975018}, "umap_x": {"value": 2.8259635}, "pca2": {"value": -8.947650679059898}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 7.908611571912814}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.480047}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C6070T", "T9007C", "C28093T", "A28860T", "G29828T"]}}}, {"name": "BRA/PR-HF366/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.272602739726, "confidence": [2021.272602739726, 2021.272602739726]}, "tsne_y": {"value": -15.357781808224496}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Paran\u00e1"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.2228257018103}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -9.48129827660194}, "tsne_x": {"value": -23.73810309893776}, "mds3": {"value": 36.075157768552806}, "umap_x": {"value": 2.5843377}, "pca2": {"value": -2.981912591417666}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.387808382145876}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3550844}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C15699T", "C19524T", "C21789T", "T29524G"], "S": ["T76I"]}, "labels": {"aa": "S: T76I"}}}]}, {"name": "NODE_0001253", "node_attrs": {"div": 35, "num_date": {"value": 2021.0674817850386, "confidence": [2020.8214573651078, 2021.1554761530908]}}, "branch_attrs": {"mutations": {"nuc": ["T592C"]}}, "children": [{"name": "BRA/RJ-NVBS668GENOV827554189971/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_y": {"value": -15.354464732205711}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.0158906758534}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.064502288660582}, "tsne_x": {"value": -23.75972373146857}, "mds3": {"value": 34.5734439243092}, "umap_x": {"value": 2.5302582}, "pca2": {"value": -9.057377523705094}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.480870612526817}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.325756}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C9891T", "C26022A", "A29858T"]}}}, {"name": "BRA/PR-HF106/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.1794520547944, "confidence": [2021.1794520547944, 2021.1794520547944]}, "tsne_y": {"value": -15.37009474114208}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Paran\u00e1"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.1911444706221}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.11718245405869}, "tsne_x": {"value": -23.81137936618775}, "mds3": {"value": 37.74002740771652}, "umap_x": {"value": 2.6286547}, "pca2": {"value": 9.356582221868498}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.002583070017446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3969283}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G571A", "C10456T", "G11483A", "G22343A", "T29452C"], "S": ["G261S"]}, "labels": {"aa": "S: G261S"}}}]}]}, {"name": "NODE_0001254", "node_attrs": {"div": 35, "num_date": {"value": 2021.0023578744588, "confidence": [2020.7845225116769, 2021.0894888502914]}}, "branch_attrs": {"mutations": {"nuc": ["C1912T"]}}, "children": [{"name": "NODE_0001256", "node_attrs": {"div": 40, "num_date": {"value": 2021.1048662224293, "confidence": [2020.9974110312073, 2021.1507183195968]}}, "branch_attrs": {"mutations": {"nuc": ["A2550G", "C5724T", "G25641T", "G25855T", "C28789T"]}}, "children": [{"name": "Brazil/BR-DF-UW21030816476/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.182191780822, "confidence": [2021.182191780822, 2021.182191780822]}, "tsne_y": {"value": -15.187789292665526}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.53872364424949}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -7.974628171368431}, "tsne_x": {"value": -23.16980079881312}, "mds3": {"value": 38.23836339404933}, "umap_x": {"value": 3.2539113}, "pca2": {"value": 30.856722471476672}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 4.198151914416654}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.8171077}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C3177T", "C21530G", "T21534A", "G21535T", "A21536C", "G23593T"], "S": ["Q677H"]}, "labels": {"aa": "S: Q677H"}}}, {"name": "BRA/SP-NVBS1284GENOV827708085715/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_y": {"value": -15.58943223811856}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.96278402205949}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.972370272510522}, "tsne_x": {"value": -23.165422743828785}, "mds3": {"value": 32.165997799533905}, "umap_x": {"value": 3.0851667}, "pca2": {"value": -9.128844379607896}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.316533441859385}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.676983}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "G4133A", "C24034T", "C26622T", "C27476T", "T28877-", "C28878-", "T28879-", "A28880-", "A28881-", "A28882-", "C28883-", "G28884-", "A28885-", "A28886-", "C28887-", "T28888-", "T28889-", "C28890-", "T28891-", "C28892-", "C28893-", "T28894-"]}}}]}, {"name": "NODE_0001357", "node_attrs": {"div": 35, "num_date": {"value": 2021.053067264682, "confidence": [2020.7642341809367, 2021.29604088632]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/SP-NXBS4889GENOV701245780862/2021", "node_attrs": {"div": 45, "num_date": {"value": 2021.5958904109589, "confidence": [2021.5958904109589, 2021.5958904109589]}, "tsne_y": {"value": -15.753802331519028}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.110110419756715}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.212493360581398}, "tsne_x": {"value": -23.359780553759737}, "mds3": {"value": 44.25356450519335}, "umap_x": {"value": 3.2537563}, "pca2": {"value": -6.461892651306347}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.7550361944541}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.810146}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C823T", "C853T", "C2710T", "C3583T", "C3653T", "C15601T", "C16887T", "C23481T", "G25459T", "C28312T"], "S": ["S640F"]}, "labels": {"aa": "S: S640F"}}}, {"name": "NODE_0001257", "node_attrs": {"div": 37, "num_date": {"value": 2021.207329496182, "confidence": [2021.0233589179281, 2021.424141255335]}}, "branch_attrs": {"mutations": {"nuc": ["C16293T", "C23604A"], "S": ["P681H"]}, "labels": {"aa": "S: P681H"}}, "children": [{"name": "BRA/PR-NVBS900GENOV827672374679/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_y": {"value": -15.626762059781411}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.486701461065326}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.080275867715508}, "tsne_x": {"value": -23.42649130369092}, "mds3": {"value": 41.9801479798745}, "umap_x": {"value": 3.0302417}, "pca2": {"value": -9.09655060998716}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.097563292417609}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.604377}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G2095A", "C6286T", "C14583T", "G19162T", "C25665T"]}}}, {"name": "NODE_0001359", "node_attrs": {"div": 37, "num_date": {"value": 2021.2563475656705, "confidence": [2021.0256100624222, 2021.4247434671865]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/GO-NVBS2546GENOV700800058620/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.5164383561644, "confidence": [2021.5164383561644, 2021.5164383561644]}, "tsne_y": {"value": -15.52003596954956}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.064151272962995}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -4.890751830192034}, "tsne_x": {"value": -23.49490625236117}, "mds3": {"value": 40.2015275446926}, "umap_x": {"value": 2.8925798}, "pca2": {"value": -6.135711505846354}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 7.461015659434136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.5275316}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G8618T", "C9442T", "G12355A", "G27948T", "A29858T"]}}}, {"name": "NODE_0001360", "node_attrs": {"div": 37, "num_date": {"value": 2021.2799035080823, "confidence": [2021.0272131367044, 2021.4291509920615]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PE-NVBS4336GENOV827943502497/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.6041095890412, "confidence": [2021.6041095890412, 2021.6041095890412]}, "tsne_y": {"value": -15.698898570044117}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.40814301538452}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.089385769140784}, "tsne_x": {"value": -23.201155818444928}, "mds3": {"value": 46.05867688788259}, "umap_x": {"value": 3.256438}, "pca2": {"value": -9.014164156535156}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 4.445072213266222}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.8173976}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G116T", "C1853A", "A2006C", "G3259T", "C5239T", "C6638T", "A11983C", "A20055G", "C25693A"]}}}, {"name": "BRA/DF-NVBS3878GENOV827846088913/2021", "node_attrs": {"div": 44, "num_date": {"value": 2021.5328767123287, "confidence": [2021.5328767123287, 2021.5328767123287]}, "tsne_y": {"value": -15.707066919013258}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.37140096680717}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.63978435564142}, "tsne_x": {"value": -23.347906070191936}, "mds3": {"value": 43.40926840180418}, "umap_x": {"value": 3.1864753}, "pca2": {"value": -7.85710860630056}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 2.610645810370656}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.756627}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C584T", "A2254G", "C3653T", "C19901T", "T22795G", "C28716T", "A28900G"]}}}]}]}]}]}]}, {"name": "NODE_0001239", "node_attrs": {"div": 35, "num_date": {"value": 2020.9780454161007, "confidence": [2020.7995139870843, 2021.0095387217855]}}, "branch_attrs": {"mutations": {"nuc": ["C8802T"]}}, "children": [{"name": "NODE_0001363", "node_attrs": {"div": 35, "num_date": {"value": 2020.9973569938952, "confidence": [2020.7984878161649, 2021.0242992396606]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/SEC-0212D/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.045205479452, "confidence": [2021.045205479452, 2021.045205479452]}, "tsne_y": {"value": -15.39014011548056}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.35410248922476}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 9.440360165470592}, "tsne_x": {"value": -23.74264230090232}, "mds3": {"value": 34.03217359813668}, "umap_x": {"value": 2.5426054}, "pca2": {"value": 1.6458574985761545}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 7.771809663724473}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.332034}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["A8224G", "C10188A", "C25000T"]}}}, {"name": "PRY/202102944_91528/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.2890410958903, "confidence": [2021.2890410958903, 2021.2890410958903]}, "tsne_y": {"value": -15.614896518847406}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.543080589705166}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.351212215424837}, "tsne_x": {"value": -23.671689309660565}, "mds3": {"value": 38.503775103982456}, "umap_x": {"value": 2.9676507}, "pca2": {"value": -9.34978326510008}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 7.81833332166111}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.5801315}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C4331T", "G18756T", "C25046T", "G27281T", "C27527T", "G29703T"], "S": ["P1162S"]}, "labels": {"aa": "S: P1162S"}}}]}, {"name": "NODE_0001241", "node_attrs": {"div": 36, "num_date": {"value": 2021.001351592197, "confidence": [2020.9150524599365, 2021.020473107305]}}, "branch_attrs": {"mutations": {"nuc": ["C6428T"]}}, "children": [{"name": "COL/SEC-0311Y/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_y": {"value": -15.413162759796815}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.548019975230915}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 11.480329869413394}, "tsne_x": {"value": -23.71868714472404}, "mds3": {"value": 36.31909371434921}, "umap_x": {"value": 2.5640383}, "pca2": {"value": -2.8939919664838847}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.681145948497361}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.363632}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G3004T", "C25916T"]}}}, {"name": "NODE_0001366", "node_attrs": {"div": 36, "num_date": {"value": 2021.0098869721191, "confidence": [2020.9894889736972, 2021.0606894145858]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001367", "node_attrs": {"div": 36, "num_date": {"value": 2021.1242565612467, "confidence": [2020.9750266315707, 2021.2513380221367]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/SEC-0445C/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.286301369863, "confidence": [2021.286301369863, 2021.286301369863]}, "tsne_y": {"value": -15.432867562305166}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -20.74916908476793}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 62.0345700996808}, "tsne_x": {"value": -23.75271950725481}, "mds3": {"value": 36.584250065020775}, "umap_x": {"value": 2.5798664}, "pca2": {"value": 6.410642317264622}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.450414337239116}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3399277}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C4582T", "G7042T", "C28312T"]}}}, {"name": "COL/SEC-0416Z/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3, "confidence": [2021.3, 2021.3]}, "tsne_y": {"value": -15.40575411370448}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -20.2829666911559}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 62.033948228701085}, "tsne_x": {"value": -23.747102815925807}, "mds3": {"value": 35.53720317448195}, "umap_x": {"value": 2.5541227}, "pca2": {"value": 6.402514588570344}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.390701466096954}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3397484}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G1999T", "C18788T"]}}}]}, {"name": "NODE_0001244", "node_attrs": {"div": 37, "num_date": {"value": 2021.055937164554, "confidence": [2021.0263303466309, 2021.0686959740362]}}, "branch_attrs": {"mutations": {"nuc": ["C10507T"]}}, "children": [{"name": "COL/SEC-1017C/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2808219178082, "confidence": [2021.2808219178082, 2021.2808219178082]}, "tsne_y": {"value": -15.36615375385576}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -18.63352776213464}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 43.9383046544995}, "tsne_x": {"value": -23.726616465688004}, "mds3": {"value": 36.26925409232664}, "umap_x": {"value": 2.5433116}, "pca2": {"value": 4.199017273633697}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 4.364619417650152}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3382893}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C19029T", "A29834T"]}}}, {"name": "COL/SEC-0377M/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.0698630136985, "confidence": [2021.0698630136985, 2021.0698630136985]}, "tsne_y": {"value": -15.420717306342857}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -18.5835643639508}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 38.19091755886221}, "tsne_x": {"value": -23.72331104786122}, "mds3": {"value": 37.6123430946775}, "umap_x": {"value": 2.5499644}, "pca2": {"value": 2.070063144076372}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 3.790606064156224}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.3583965}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}]}]}]}, {"name": "NODE_0001285", "node_attrs": {"div": 34, "num_date": {"value": 2021.0545520441258, "confidence": [2020.8948045030888, 2021.2604837618676]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001247", "node_attrs": {"div": 35, "num_date": {"value": 2021.127892422977, "confidence": [2020.9519107335373, 2021.3117728198877]}}, "branch_attrs": {"mutations": {"nuc": ["C23380T"]}}, "children": [{"name": "PRY/WOR12903A844_202103390_202103390_2-4740142/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4616438356165, "confidence": [2021.4616438356165, 2021.4616438356165]}, "tsne_y": {"value": -15.1319962276867}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Paraguay"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -26.42650655370182}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.824821496632603}, "tsne_x": {"value": -23.54580665447772}, "mds3": {"value": 38.56533814317297}, "umap_x": {"value": 3.02139}, "pca2": {"value": 19.85588933823383}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.596113708013122}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.6273775}, "country": {"value": "Paraguay"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C2910T", "C4891T", "C5812T", "T7991C", "C12325T", "A17448G", "A28855G"]}}}, {"name": "NODE_0001248", "node_attrs": {"div": 36, "num_date": {"value": 2021.2066433542245, "confidence": [2021.0133388709337, 2021.3462015497234]}}, "branch_attrs": {"mutations": {"nuc": ["G9105A"]}}, "children": [{"name": "BRA/SP-NVBS1187GENOV45615245750/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_y": {"value": -15.715911397839736}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -29.065816085841103}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.066677280475943}, "tsne_x": {"value": -23.82669216230888}, "mds3": {"value": 38.28619794885567}, "umap_x": {"value": 3.067601}, "pca2": {"value": -9.10711110044226}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 6.149015120159112}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.65229}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C888T", "A8254G", "T19149C", "C21859T", "G25599T", "G28077T"]}}}, {"name": "BRA/PR-NVBS5696GENOV045374818394/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5876712328768, "confidence": [2021.5876712328768, 2021.5876712328768]}, "tsne_y": {"value": -15.848443050607369}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -33.78866281315809}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.135667584789006}, "tsne_x": {"value": -24.107457862294325}, "mds3": {"value": 40.47553059230808}, "umap_x": {"value": 3.2806714}, "pca2": {"value": -6.480288323915895}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 5.359535430930394}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.839958}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G9130T", "C13426T", "C20384T", "C22480T", "G23587T", "G24535T", "G25145A", "C25549T", "C25904T", "C29108T"], "S": ["Q675H", "E1195K"]}, "labels": {"aa": "S: Q675H, E1195K"}}}]}]}, {"name": "NODE_0001369", "node_attrs": {"div": 34, "num_date": {"value": 2021.1063937271038, "confidence": [2020.9767787798514, 2021.2593477688724]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001370", "node_attrs": {"div": 34, "num_date": {"value": 2021.1314451538676, "confidence": [2020.9827123717484, 2021.2659905283997]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PR-NVBS984GENOV827708424071/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_y": {"value": -15.230450096224189}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -27.93352203540542}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.088736564862639}, "tsne_x": {"value": -23.44371484434789}, "mds3": {"value": 39.719390569203775}, "umap_x": {"value": 3.0921245}, "pca2": {"value": -9.02962495910788}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 2.063620062040853}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.673096}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C829T", "C19884T", "C21207T", "C24442T", "G26143T", "C27509T", "C29545T", "G29755T"]}}}, {"name": "BRA/SC-NXBS290GENOV45614783604/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.349315068493, "confidence": [2021.349315068493, 2021.349315068493]}, "tsne_y": {"value": -15.633486993390308}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -28.102905984485616}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -4.8295321273413565}, "tsne_x": {"value": -23.62957048613864}, "mds3": {"value": 37.97121954935843}, "umap_x": {"value": 3.0050097}, "pca2": {"value": -6.476414417040095}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 4.3892522445388575}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.606225}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G2150A", "A3394C", "C5724T", "G5880A", "C26022T", "C28677T", "T28705C"]}}}]}, {"name": "NODE_0001372", "node_attrs": {"div": 34, "num_date": {"value": 2021.129956806446, "confidence": [2020.9889800104334, 2021.2690047986803]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/RJ-NVBS614GENOV890120095280/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.341095890411, "confidence": [2021.341095890411, 2021.341095890411]}, "tsne_y": {"value": -15.545196619198537}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -25.33508396298712}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.084390976870238}, "tsne_x": {"value": -23.69402130161977}, "mds3": {"value": 38.23965848728968}, "umap_x": {"value": 2.915104}, "pca2": {"value": -9.120517886030786}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 4.091675261650747}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.552022}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C5512T", "C5544T", "C11758T", "G19962T", "G26062T", "G28839A"]}}}, {"name": "NODE_0001373", "node_attrs": {"div": 34, "num_date": {"value": 2021.1882345144093, "confidence": [2020.9492894053376, 2021.3421296955607]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/SEC-0859A/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_y": {"value": -15.42854232045556}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -18.699986885423325}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": 36.701848793821775}, "tsne_x": {"value": -23.740188634347763}, "mds3": {"value": 37.75275700303701}, "umap_x": {"value": 2.5722814}, "pca2": {"value": 1.752640365914296}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 3.252596287013404}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.357594}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["A4851G", "C14220T", "C17745A", "A19821C"]}}}, {"name": "NODE_0001375", "node_attrs": {"div": 34, "num_date": {"value": 2021.2086516667675, "confidence": [2020.9517777222763, 2021.419554276882]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/21895648MLM/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.63698630137, "confidence": [2021.63698630137, 2021.63698630137]}, "tsne_y": {"value": -15.41357346392227}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.4"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.40037481781057}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -3.849487727496015}, "tsne_x": {"value": -23.7720703130792}, "mds3": {"value": 36.94925424990062}, "umap_x": {"value": 2.6460087}, "pca2": {"value": -0.1447006733101687}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 7.44452094644046}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.4038057}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C1348T", "G20616T", "T23599G", "G26653A", "C29627T"], "S": ["N679K"]}, "labels": {"aa": "S: N679K"}}}, {"name": "NODE_0001377", "node_attrs": {"div": 34, "num_date": {"value": 2021.224844799183, "confidence": [2020.9544279273646, 2021.4221636162777]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/DF-NVBS3921GENOV827826517068/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.521917808219, "confidence": [2021.521917808219, 2021.521917808219]}, "tsne_y": {"value": -15.630302063338847}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.533155091822184}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -6.084124006957589}, "tsne_x": {"value": -23.661000142094053}, "mds3": {"value": 39.03007880058416}, "umap_x": {"value": 2.9024007}, "pca2": {"value": -9.118347822340365}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 8.396063224296531}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.5090075}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G2154T", "C5100T", "T5422A", "C5812T", "C14292T", "C14599T", "C25487T"]}}}, {"name": "NODE_0001379", "node_attrs": {"div": 34, "num_date": {"value": 2021.2524440231102, "confidence": [2020.952921390494, 2021.421067936435]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/DF-NVBS3919GENOV827808463178/2021", "node_attrs": {"div": 46, "num_date": {"value": 2021.5109589041097, "confidence": [2021.5109589041097, 2021.5109589041097]}, "tsne_y": {"value": -15.972579152875946}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -34.8143161382772}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.148426474457233}, "tsne_x": {"value": -23.89412370190761}, "mds3": {"value": 40.30628707371937}, "umap_x": {"value": 3.2479682}, "pca2": {"value": -6.466654491875652}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 3.969143355496664}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.811583}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["G410T", "G942A", "A2870G", "C3096T", "T3919C", "C7860T", "T7999G", "G8353A", "C14922T", "C19151T", "A20268G", "C28674T"]}}}, {"name": "NODE_0001381", "node_attrs": {"div": 34, "num_date": {"value": 2021.2787320556042, "confidence": [2020.9576699267081, 2021.4292233594638]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/PA-NVBS2732GENOV045950139547/2021", "node_attrs": {"div": 41, "num_date": {"value": 2021.513698630137, "confidence": [2021.513698630137, 2021.513698630137]}, "tsne_y": {"value": -15.64084810693636}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -22.4092439252271}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -5.770627174226327}, "tsne_x": {"value": -23.69247302430017}, "mds3": {"value": 40.00065535474156}, "umap_x": {"value": 2.936224}, "pca2": {"value": -8.218824928992566}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 8.440900313750845}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.552221}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["T1144C", "C20762T", "C21727T", "G21893A", "C27741T", "C29253T", "C29482T"], "S": ["D111N"]}, "labels": {"aa": "S: D111N"}}}, {"name": "USA/NC-CDC-QDX26343467/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.486301369863, "confidence": [2021.486301369863, 2021.486301369863]}, "tsne_y": {"value": -15.398903674797603}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "P.1.10.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "4"}, "division": {"value": "North Carolina"}, "umap_label_for_Nextstrain_clade": {"value": "4"}, "Nextclade_pango_collapsed": {"value": "P.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.73101449806023}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "1"}, "pca1": {"value": -3.840377528882024}, "tsne_x": {"value": -23.741236323606685}, "mds3": {"value": 35.54886359249962}, "umap_x": {"value": 2.6357484}, "pca2": {"value": -0.1615117687975902}, "Nextstrain_clade": {"value": "20J (Gamma, V3)"}, "t-sne_label_for_Nextstrain_clade": {"value": "3"}, "mds2": {"value": 4.924811666124156}, "umap_label_for_Nextclade_pango_collapsed": {"value": "4"}, "umap_y": {"value": 7.4114347}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "1"}}, "branch_attrs": {"mutations": {"nuc": ["C1427T", "C2841T", "G4300T", "C13329T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001304", "node_attrs": {"div": 7, "num_date": {"value": 2020.1602755848464, "confidence": [2020.1277263463876, 2020.194998896682]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "LR963435", "node_attrs": {"div": 9, "num_date": {"value": 2020.25, "confidence": [2020.25, 2020.25]}, "tsne_y": {"value": -8.520947158399355}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Zimbabwe"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.6045165476426873}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 7.265296445506967}, "tsne_x": {"value": -12.944171159433727}, "mds3": {"value": 6.395199463512817}, "umap_x": {"value": 12.279563}, "pca2": {"value": -7.094353141327198}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0033097352835009}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.209183}, "country": {"value": "Zimbabwe"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C14980T", "T27222C"]}}}, {"name": "NODE_0001305", "node_attrs": {"div": 7, "num_date": {"value": 2020.1691667191358, "confidence": [2020.1529073646789, 2020.198300705667]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001130", "node_attrs": {"div": 7, "num_date": {"value": 2020.1954200610624, "confidence": [2020.1689735816005, 2020.200819672131]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/covper083/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.200819672131, "confidence": [2020.200819672131, 2020.200819672131]}, "tsne_y": {"value": -8.427308131599679}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.2382922490168477}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -7.824423954785865}, "tsne_x": {"value": -12.882032066124884}, "mds3": {"value": 4.824820872152468}, "umap_x": {"value": 12.385012}, "pca2": {"value": 30.95597957171024}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0730794717663881}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.634043}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C29675-"]}}}, {"name": "NODE_0001132", "node_attrs": {"div": 8, "num_date": {"value": 2020.2357816802942, "confidence": [2020.192325757485, 2020.3817403252087]}}, "branch_attrs": {"mutations": {"nuc": ["T19839C"]}}, "children": [{"name": "NODE_0001137", "node_attrs": {"div": 12, "num_date": {"value": 2020.3613752946794, "confidence": [2020.280063179885, 2020.4243623494804]}}, "branch_attrs": {"mutations": {"nuc": ["C21530G", "T21534A", "G21535T", "A21536C"]}}, "children": [{"name": "USA/WA-UW-3600283/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_y": {"value": -8.001290068205808}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.597033304215862}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.070922282237404}, "tsne_x": {"value": -14.485887688390177}, "mds3": {"value": 6.215168132040831}, "umap_x": {"value": 11.956914}, "pca2": {"value": 30.47660757757606}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.886114611451248}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.2918415}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C20148T"]}}}, {"name": "USA/WA-UW-3601011/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.4849726775956, "confidence": [2020.4849726775956, 2020.4849726775956]}, "tsne_y": {"value": -7.987786597606149}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.291"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.077450761780463}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.060312118601358}, "tsne_x": {"value": -14.794069805164728}, "mds3": {"value": 8.665827189070187}, "umap_x": {"value": 10.09433}, "pca2": {"value": 30.473835830091712}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 7.373045628466885}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.221539}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C14768T", "C15933T", "G16968T", "T18123C", "C22591T", "T22825C", "G25249T", "G25599T", "G28193T"], "S": ["M1229I"]}, "labels": {"aa": "S: M1229I"}}}]}, {"name": "NODE_0001133", "node_attrs": {"div": 8, "num_date": {"value": 2020.3258516931185, "confidence": [2020.1667408286455, 2020.4108871173771]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-S1774/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4166666666667, "confidence": [2020.4166666666667, 2020.4166666666667]}, "tsne_y": {"value": -8.286320809235269}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.5169967970284276}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -7.828333713036411}, "tsne_x": {"value": -12.715441958442405}, "mds3": {"value": 5.990105050801981}, "umap_x": {"value": 12.237927}, "pca2": {"value": -12.841684080391246}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.5947577393855398}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.056051}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C28256T", "C29784T"]}}}, {"name": "NODE_0001135", "node_attrs": {"div": 8, "num_date": {"value": 2020.3671804578396, "confidence": [2020.160035095254, 2020.444643983702]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001134", "node_attrs": {"div": 18, "num_date": {"value": 2020.7609055711368, "confidence": [2020.7036212231878, 2020.799180327869]}}, "branch_attrs": {"mutations": {"nuc": ["A1316G", "C1514T", "A2151G", "C8318A", "C14877T", "G19086T", "C23457T", "C23604G", "G29260T", "G29751T"], "S": ["T632I", "P681R"]}, "labels": {"aa": "S: T632I, P681R"}}, "children": [{"name": "NZL/20CV0454/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.799180327869, "confidence": [2020.799180327869, 2020.799180327869]}, "tsne_y": {"value": -5.9365151305178685}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 10.437498225430774}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 44.273959724910256}, "tsne_x": {"value": -10.999831236802704}, "mds3": {"value": 7.481759105493542}, "umap_x": {"value": 10.934217}, "pca2": {"value": -4.510972497817665}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.8471330161311592}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.245749}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G29779T"]}}}, {"name": "NODE_0001140", "node_attrs": {"div": 18, "num_date": {"value": 2020.7949647763412, "confidence": [2020.7261729229583, 2020.8140672003103]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0498/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8155737704917, "confidence": [2020.8155737704917, 2020.8155737704917]}, "tsne_y": {"value": -5.928954054194798}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.098381665476676}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.9164276326282526}, "tsne_x": {"value": -10.9830069201621}, "mds3": {"value": 8.020278536636342}, "umap_x": {"value": 10.336095}, "pca2": {"value": 11.470868556177754}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.644216524610451}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.503015}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3404A"]}}}, {"name": "NZL/20CV0502/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.8319672131147, "confidence": [2020.8319672131147, 2020.8319672131147]}, "tsne_y": {"value": -5.9351606556101535}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 10.82745293273462}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.91570646531946}, "tsne_x": {"value": -10.987209641748777}, "mds3": {"value": 7.342930322955046}, "umap_x": {"value": 10.562094}, "pca2": {"value": 11.468936305837683}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.6346509808505886}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.811428}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001138", "node_attrs": {"div": 20, "num_date": {"value": 2020.8848501071816, "confidence": [2020.7324433872323, 2020.9862549075895]}}, "branch_attrs": {"mutations": {"nuc": ["C14340T", "G17551A", "C18877T", "A19167G", "C19274A", "G22017T", "G23012A", "G23868T", "T26604C", "C27213T", "A28271-", "C28833T", "G29527T"], "S": ["W152L", "E484K", "G769V"]}, "labels": {"aa": "S: W152L, E484K, G769V"}}, "children": [{"name": "NODE_0001143", "node_attrs": {"div": 20, "num_date": {"value": 2021.0022549245512, "confidence": [2020.7042267560971, 2021.12031210107]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Hu/Kng/207812", "node_attrs": {"div": 23, "num_date": {"value": 2021.2506849315068, "confidence": [2021.2506849315068, 2021.2506849315068]}, "tsne_y": {"value": -4.015095466871863}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.65000574682825}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.907086492621866}, "tsne_x": {"value": -9.806736088261284}, "mds3": {"value": 12.709125588796336}, "umap_x": {"value": 9.513083}, "pca2": {"value": -0.0105092012465308}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 16.824838370710875}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.755905}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6358T", "C7303T", "C20759T"]}}}, {"name": "USA/MD-NIH-00602/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.190410958904, "confidence": [2021.190410958904, 2021.190410958904]}, "tsne_y": {"value": -4.01344617561767}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.787359655408002}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.52890563377434}, "tsne_x": {"value": -9.806170073563491}, "mds3": {"value": 12.820353947713487}, "umap_x": {"value": 9.42328}, "pca2": {"value": -3.055600143850832}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 17.906289773102504}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.66966}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C10015T", "G15907T", "C19884T", "G21255C"]}}}]}, {"name": "NODE_0001144", "node_attrs": {"div": 20, "num_date": {"value": 2020.897363087635, "confidence": [2020.7400479519272, 2020.994301733302]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-MDH-3895/2021", "node_attrs": {"div": 28, "num_date": {"value": 2021.1493150684933, "confidence": [2021.1493150684933, 2021.1493150684933]}, "tsne_y": {"value": -4.0125965834139645}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.67965011620052}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 13.87194902195687}, "tsne_x": {"value": -9.81232207795506}, "mds3": {"value": 7.670540696272422}, "umap_x": {"value": 9.252235}, "pca2": {"value": 2.8089324803223024}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 24.88208148969017}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.457229}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3140T", "C16393T", "A18479G", "G24620T", "G25423-", "G25424-", "A25425-", "A25426-", "C25427-", "T25428-", "G25429-", "T25430-", "A25431-", "A25432-", "C25433-", "T25434-", "T25435-", "T25436-", "G25437-", "A25448G", "G26730T", "C28344T", "C29708T"], "S": ["A1020S"]}, "labels": {"aa": "S: A1020S"}}}, {"name": "NODE_0001145", "node_attrs": {"div": 20, "num_date": {"value": 2020.940459393892, "confidence": [2020.739071976743, 2020.9910866090281]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001139", "node_attrs": {"div": 22, "num_date": {"value": 2020.9968257816097, "confidence": [2020.9086564348315, 2021.008178659432]}}, "branch_attrs": {"mutations": {"nuc": ["T26076C", "G29745T"]}}, "children": [{"name": "LC649396", "node_attrs": {"div": 23, "num_date": {"value": 2021.009589041096, "confidence": [2021.009589041096, 2021.009589041096]}, "tsne_y": {"value": -4.015652749644437}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Tokyo"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -12.12923001255421}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.830124683719457}, "tsne_x": {"value": -9.809764439140332}, "mds3": {"value": 16.944954260664073}, "umap_x": {"value": 9.492041}, "pca2": {"value": -12.828241182693349}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 12.795749711269492}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.752937}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G529T"]}}}, {"name": "NZL/21MV0186/2021", "node_attrs": {"div": 26, "num_date": {"value": 2021.1849315068494, "confidence": [2021.1849315068494, 2021.1849315068494]}, "tsne_y": {"value": -4.016333391746601}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -15.0010854053055}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 44.38209559264744}, "tsne_x": {"value": -9.810921136193365}, "mds3": {"value": 11.021141480166586}, "umap_x": {"value": 9.430841}, "pca2": {"value": -0.2093501516427864}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 18.84797673138197}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.648158}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2334T", "C7164T", "C12049T", "C23996T"], "S": ["P812S"]}, "labels": {"aa": "S: P812S"}}}]}, {"name": "NODE_0001142", "node_attrs": {"div": 21, "num_date": {"value": 2021.067703427374, "confidence": [2020.8755261339122, 2021.0972602739726]}}, "branch_attrs": {"mutations": {"nuc": ["A27440G"]}}, "children": [{"name": "NZL/21MV0426/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.390410958904, "confidence": [2021.390410958904, 2021.390410958904]}, "tsne_y": {"value": -4.001696134685659}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -30.75899672761789}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.842014664779723}, "tsne_x": {"value": -9.79558765474738}, "mds3": {"value": 11.465338220171835}, "umap_x": {"value": 8.829244}, "pca2": {"value": 11.494708916714814}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 19.011458933416755}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.548721}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6651T", "G7936T", "C9979T", "C11704T", "A15860G", "C16208A", "C18804T", "G19846T", "A23813G", "C25521T", "A29371C"], "S": ["N751D"]}, "labels": {"aa": "S: N751D"}}}, {"name": "Japan/Donner408/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.0972602739726, "confidence": [2021.0972602739726, 2021.0972602739726]}, "tsne_y": {"value": -4.016058461480653}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "R.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "division": {"value": "Kanto"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -10.31636398230143}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -0.3966358893484876}, "tsne_x": {"value": -9.80859754127344}, "mds3": {"value": 13.399616550973038}, "umap_x": {"value": 10.05504}, "pca2": {"value": 0.4416894103211128}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "-1"}, "mds2": {"value": 13.011203392351607}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.18559}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0001323", "node_attrs": {"div": 7, "num_date": {"value": 2020.1840411166074, "confidence": [2020.163512365078, 2020.211241464869]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000942", "node_attrs": {"div": 8, "num_date": {"value": 2020.2359870524963, "confidence": [2020.1900334352313, 2020.2730055214238]}}, "branch_attrs": {"mutations": {"nuc": ["A20374G"]}}, "children": [{"name": "NGA/CV47/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3101092896175, "confidence": [2020.3101092896175, 2020.3101092896175]}, "tsne_y": {"value": -7.897737760555307}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.487"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.11913640284744}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -8.974222261149581}, "tsne_x": {"value": -12.691400578855864}, "mds3": {"value": 5.7711441442053255}, "umap_x": {"value": 12.234136}, "pca2": {"value": -18.824575459057883}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.1795747749127831}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.91731}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["T1675C", "C7772T", "G19292T"]}}}, {"name": "NGA/CV152/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.457650273224, "confidence": [2020.457650273224, 2020.457650273224]}, "tsne_y": {"value": -7.514872575594235}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.487"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.044867710104576}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.963229640025291}, "tsne_x": {"value": -12.743541712225838}, "mds3": {"value": 6.001829434838164}, "umap_x": {"value": 12.163963}, "pca2": {"value": -10.95425228466103}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.3980113329467497}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.712944}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C17004T", "C26681T", "G29745T", "G29751T"]}}}]}, {"name": "NODE_0001382", "node_attrs": {"div": 7, "num_date": {"value": 2020.1844704886928, "confidence": [2020.162135510287, 2020.2161870056316]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001384", "node_attrs": {"div": 7, "num_date": {"value": 2020.2017162557734, "confidence": [2020.1859534433297, 2020.2228334523427]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000981", "node_attrs": {"div": 8, "num_date": {"value": 2020.3259863255828, "confidence": [2020.2228805114787, 2020.3647360198966]}}, "branch_attrs": {"mutations": {"nuc": ["C745T"]}}, "children": [{"name": "GHA/WACCBIP_nCoV_GS43/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.561475409836, "confidence": [2020.561475409836, 2020.561475409836]}, "tsne_y": {"value": -9.397824918033294}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.485"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 3.629704809798397}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 57.29422187499674}, "tsne_x": {"value": -13.076078647650132}, "mds3": {"value": 3.690330893387213}, "umap_x": {"value": 12.020679}, "pca2": {"value": -4.294009363005029}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.062436562071077}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.408388}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T1894C", "G3206T", "A14820G", "C14937T", "C17550T"]}}}, {"name": "GHA/35012_S17/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3920765027322, "confidence": [2020.3920765027322, 2020.3920765027322]}, "tsne_y": {"value": -8.62748420920682}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.485"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.4504204698985827}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.3001904702777525}, "tsne_x": {"value": -12.982373324710402}, "mds3": {"value": 6.180558004087607}, "umap_x": {"value": 12.271348}, "pca2": {"value": -6.467314026974294}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.3948795903195556}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.980875}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["A5401G", "G25217T"], "S": ["G1219C"]}, "labels": {"aa": "S: G1219C"}}}]}, {"name": "NODE_0001388", "node_attrs": {"div": 7, "num_date": {"value": 2020.2236269120317, "confidence": [2020.1995016689702, 2020.2254098360656]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0024/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2254098360656, "confidence": [2020.2254098360656, 2020.2254098360656]}, "tsne_y": {"value": -8.511959913371136}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.87234719415999}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.081422453716029}, "tsne_x": {"value": -12.850979126191792}, "mds3": {"value": 5.694902272091521}, "umap_x": {"value": 12.360559}, "pca2": {"value": 12.688217044104498}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.0468890434394384}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.592373}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000972", "node_attrs": {"div": 8, "num_date": {"value": 2020.3278970980004, "confidence": [2020.2108313805802, 2020.3814315989682]}}, "branch_attrs": {"mutations": {"nuc": ["A11781G"]}}, "children": [{"name": "GHA/nmimr-SARS-CoV-2-NTRA-9791/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.8674863387978, "confidence": [2020.8674863387978, 2020.8674863387978]}, "tsne_y": {"value": -9.941121680643286}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.359"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.682506704847466}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.16301893394304}, "tsne_x": {"value": -13.475885365749573}, "mds3": {"value": 6.358428498165198}, "umap_x": {"value": 10.355384}, "pca2": {"value": -19.1336664854447}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 5.698269419637084}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.57306}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1431G", "C5907T", "T11404C", "A11782G", "C24795T", "C25469T", "T26066C", "A28305G", "C28315T", "C29353T", "C29750T"], "S": ["A1078V"]}, "labels": {"aa": "S: A1078V"}}}, {"name": "NGA/CV288/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4959016393443, "confidence": [2020.4959016393443, 2020.4959016393443]}, "tsne_y": {"value": -9.409629424485306}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.931700849988497}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.154761308778687}, "tsne_x": {"value": -13.26322269668132}, "mds3": {"value": 6.101470126666832}, "umap_x": {"value": 12.003556}, "pca2": {"value": -6.767161681294734}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.12200652493276}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.375504}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C5581T", "T9757C", "C26270T", "G26589T", "G29645T"]}}}]}]}]}, {"name": "NODE_0001390", "node_attrs": {"div": 7, "num_date": {"value": 2020.1928394028234, "confidence": [2020.1725979904108, 2020.2179433617505]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001392", "node_attrs": {"div": 7, "num_date": {"value": 2020.210769855719, "confidence": [2020.1906816890253, 2020.2325971891635]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000935", "node_attrs": {"div": 8, "num_date": {"value": 2020.3319428076718, "confidence": [2020.2170154490434, 2020.4469838436632]}}, "branch_attrs": {"mutations": {"nuc": ["G28903T"]}}, "children": [{"name": "HongKong/HKPU-00078/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.8346994535518, "confidence": [2020.8346994535518, 2020.8346994535518]}, "tsne_y": {"value": -9.256116906646488}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.174"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.1912988407444869}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.954693799343045}, "tsne_x": {"value": -11.554370288468382}, "mds3": {"value": 11.838553039509096}, "umap_x": {"value": 11.423854}, "pca2": {"value": -0.2315075714762233}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.2901474379447897}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.674347}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G529T", "T1343C", "A12307G", "G28378T", "G28727T", "A29408G"]}}}, {"name": "NZL/20CV0641/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.9303278688524, "confidence": [2020.9303278688524, 2020.9303278688524]}, "tsne_y": {"value": -8.732723065447159}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "AD.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.696996730610483}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.04547211123144}, "tsne_x": {"value": -15.12543400905446}, "mds3": {"value": 12.11663528448522}, "umap_x": {"value": 9.140112}, "pca2": {"value": -3.1760662308073795}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.835130830529684}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.380767}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G105T", "C593T", "C936T", "A1163T", "C2189T", "T3256C", "C5622T", "C8394T", "G11083T", "G14202T", "G19542T", "C19718T", "C23248T", "C26060T", "G29017A", "G29227T", "C29421T", "C29466T", "A29771G"]}}}]}, {"name": "NODE_0001394", "node_attrs": {"div": 7, "num_date": {"value": 2020.2358176688172, "confidence": [2020.2092169688024, 2020.2363387978141]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0067/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2363387978141, "confidence": [2020.2363387978141, 2020.2363387978141]}, "tsne_y": {"value": -8.508296685673594}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.5711797821730739}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.838258449481439}, "tsne_x": {"value": -12.845846077411371}, "mds3": {"value": 5.433899706342905}, "umap_x": {"value": 12.360622}, "pca2": {"value": -8.300574449340546}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0573025558687936}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.61076}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001397", "node_attrs": {"div": 7, "num_date": {"value": 2020.236024716117, "confidence": [2020.2210578865302, 2020.2520555481706]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001398", "node_attrs": {"div": 7, "num_date": {"value": 2020.2554907264678, "confidence": [2020.2220635638853, 2020.2581967213114]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC852/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2581967213114, "confidence": [2020.2581967213114, 2020.2581967213114]}, "tsne_y": {"value": -8.478498070586362}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.5152642401416123}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 7.299967991555358}, "tsne_x": {"value": -12.85186038020087}, "mds3": {"value": 5.339355096688627}, "umap_x": {"value": 12.388167}, "pca2": {"value": -7.447986841746388}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0599902223971371}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.637213}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000932", "node_attrs": {"div": 8, "num_date": {"value": 2020.2805926719623, "confidence": [2020.2561095438018, 2020.3212025797002]}}, "branch_attrs": {"mutations": {"nuc": ["C20234T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5312/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3374316939892, "confidence": [2020.3374316939892, 2020.3374316939892]}, "tsne_y": {"value": -8.774114166090666}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.1354708352845653}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.553910900963299}, "tsne_x": {"value": -12.527642621394476}, "mds3": {"value": 6.49049010900292}, "umap_x": {"value": 12.226907}, "pca2": {"value": -11.31294687384903}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.1299125176763734}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.86212}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G9191A", "T11924C", "T26016G"]}}}, {"name": "NODE_0001401", "node_attrs": {"div": 8, "num_date": {"value": 2020.325831875595, "confidence": [2020.2915765881419, 2020.3722187737148]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-2736/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3838797814208, "confidence": [2020.3838797814208, 2020.3838797814208]}, "tsne_y": {"value": -8.527383711725669}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.26587940082912}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -7.437697780714155}, "tsne_x": {"value": -12.86228104143166}, "mds3": {"value": 6.192607036300531}, "umap_x": {"value": 12.275825}, "pca2": {"value": -11.966407136247504}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.2111663700266242}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.187088}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G19109T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GP-5890/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3948087431695, "confidence": [2020.3948087431695, 2020.3948087431695]}, "tsne_y": {"value": -8.470742423336834}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.7495474836648381}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.291571955976471}, "tsne_x": {"value": -12.826815743922348}, "mds3": {"value": 5.20429817064006}, "umap_x": {"value": 12.293308}, "pca2": {"value": -6.704814616370102}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1130712142517729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.43497}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C26681T"]}}}]}]}]}, {"name": "NODE_0001402", "node_attrs": {"div": 7, "num_date": {"value": 2020.3282335729275, "confidence": [2020.154401933629, 2020.492398557431]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000930", "node_attrs": {"div": 8, "num_date": {"value": 2020.411131244333, "confidence": [2020.244812763224, 2020.5666833384537]}}, "branch_attrs": {"mutations": {"nuc": ["C28770T"]}}, "children": [{"name": "NZL/21CV0015/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.9931693989072, "confidence": [2020.9931693989072, 2020.9931693989072]}, "tsne_y": {"value": -9.732234177456084}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.2090532501541569}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9441310750153744}, "tsne_x": {"value": -11.30038255756007}, "mds3": {"value": 15.44713791218862}, "umap_x": {"value": 10.719781}, "pca2": {"value": -0.2275749325239415}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.7413869388241574}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.004031}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2485T", "C7488T", "C8917T", "G9389A", "C18568T", "G22216T", "G27952T", "G28736T", "C29367T"], "S": ["Q218H"]}, "labels": {"aa": "S: Q218H"}}}, {"name": "MW294011", "node_attrs": {"div": 21, "num_date": {"value": 2020.818306010929, "confidence": [2020.818306010929, 2020.818306010929]}, "tsne_y": {"value": -10.084279626341752}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.161"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Ecuador"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.554769208986055}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.164948555427197}, "tsne_x": {"value": -11.569316121807942}, "mds3": {"value": 10.067063788016394}, "umap_x": {"value": 10.075885}, "pca2": {"value": -19.18149962016324}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 7.988043226126049}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.185792}, "country": {"value": "Ecuador"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G2398A", "G3122C", "T3127C", "G3878A", "C5817T", "C5842T", "A14033G", "C18029T", "C18788T", "G23403A", "C24034T", "G25526T", "G28903T"], "S": ["G614D"]}, "labels": {"aa": "S: G614D"}}}]}, {"name": "NODE_0000956", "node_attrs": {"div": 8, "num_date": {"value": 2020.411230665575, "confidence": [2020.2686582502856, 2020.5434798082508]}}, "branch_attrs": {"mutations": {"nuc": ["C936T"]}}, "children": [{"name": "USA/NY-PV18697/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_y": {"value": -9.898206070023257}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.434"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.3744624151803206}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -6.956224769640293}, "tsne_x": {"value": -13.161062251053268}, "mds3": {"value": 14.628217409853557}, "umap_x": {"value": 10.969642}, "pca2": {"value": 22.330347684287823}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.8703243220017688}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.268601}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["A2342G", "G3259T", "C6070T", "C11591T", "G17122T", "C18348T", "C24378T", "A26069G"], "S": ["S939F"]}, "labels": {"aa": "S: S939F"}}}, {"name": "USA/UT-UPHL-2104686679/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.6161202185792, "confidence": [2020.6161202185792, 2020.6161202185792]}, "tsne_y": {"value": -9.464745064412012}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.228"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.368299273798928}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.19621687646372}, "tsne_x": {"value": -12.28646319400828}, "mds3": {"value": 6.731932029873479}, "umap_x": {"value": 11.793552}, "pca2": {"value": -15.475890913981129}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.2306464365500382}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.12747}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G14874T", "C18654T", "A20288G", "C21721T", "G24872T", "C28638A"], "S": ["V1104L"]}, "labels": {"aa": "S: V1104L"}}}]}]}]}]}]}, {"name": "NODE_0001405", "node_attrs": {"div": 7, "num_date": {"value": 2020.2080618308723, "confidence": [2020.1909766538647, 2020.2199453551912]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0045/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.2199453551912, "confidence": [2020.2199453551912, 2020.2199453551912]}, "tsne_y": {"value": -8.500832896787747}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.3905692515203298}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.056457845331978}, "tsne_x": {"value": -12.844264753866574}, "mds3": {"value": 5.189061872368902}, "umap_x": {"value": 12.390529}, "pca2": {"value": 12.459917410710334}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0669676791007177}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.63987}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001408", "node_attrs": {"div": 7, "num_date": {"value": 2020.2110190789795, "confidence": [2020.1887124515213, 2020.2555702300413]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001410", "node_attrs": {"div": 7, "num_date": {"value": 2020.2195276603145, "confidence": [2020.1924199253701, 2020.269871076997]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000959", "node_attrs": {"div": 8, "num_date": {"value": 2020.3279358887567, "confidence": [2020.2341846211643, 2020.4125732244436]}}, "branch_attrs": {"mutations": {"nuc": ["C3373A"]}}, "children": [{"name": "EGY/EGY_CCHE57357_P_24/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.47131147541, "confidence": [2020.47131147541, 2020.47131147541]}, "tsne_y": {"value": -7.950115447804219}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.1749079342441339}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.157858836256375}, "tsne_x": {"value": -12.7510742987627}, "mds3": {"value": 7.87441550959263}, "umap_x": {"value": 12.13366}, "pca2": {"value": -19.224031001246303}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.3786030358913523}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.693903}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["A518G", "C21575T", "G29766A"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0001412", "node_attrs": {"div": 8, "num_date": {"value": 2020.3617326335782, "confidence": [2020.237165463278, 2020.4260624216874]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "UZB/hCoV-19-Uzb-CGB-08/2020", "node_attrs": {"div": 24, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_y": {"value": -9.233115336443667}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.294"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tashkent"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.809921944504364}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.542905178136528}, "tsne_x": {"value": -10.908360905413335}, "mds3": {"value": 10.054795749128582}, "umap_x": {"value": 9.800362}, "pca2": {"value": -12.705044125178464}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.725219583345536}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.965295}, "country": {"value": "Uzbekistan"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A6T", "T9-", "T10-", "T11-", "A12-", "T13-", "A14-", "C15-", "C16-", "T17-", "T18A", "C4582T", "C5175T", "T5386C", "C6883T", "T10150C", "G11417T", "A13365C", "G21724A", "A23503T", "C27684T", "G28378T", "G28975C", "G29195T", "A29676G"]}}}, {"name": "GMB/3737/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5696721311476, "confidence": [2020.5696721311476, 2020.5696721311476]}, "tsne_y": {"value": -9.16958381902909}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gambia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.095490969504891}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9586393957299415}, "tsne_x": {"value": -10.156336013622596}, "mds3": {"value": 2.3349527724243724}, "umap_x": {"value": 7.7619796}, "pca2": {"value": 0.7978210501261372}, "Nextstrain_clade": {"value": "20A"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.2800749207630446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.677824}, "country": {"value": "Gambia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1065G", "C9561T", "C16575T", "G24586T", "C27923T", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-"]}}}]}]}, {"name": "NODE_0000984", "node_attrs": {"div": 8, "num_date": {"value": 2020.2597913486904, "confidence": [2020.2146483395786, 2020.2878393951983]}}, "branch_attrs": {"mutations": {"nuc": ["G16853T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-3442/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5204918032787, "confidence": [2020.5204918032787, 2020.5204918032787]}, "tsne_y": {"value": -9.285751306810528}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.382"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.574838218927074}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.379558911073638}, "tsne_x": {"value": -14.048582011247015}, "mds3": {"value": 13.136411543355822}, "umap_x": {"value": 11.1851845}, "pca2": {"value": -11.556537448980166}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.439898452428889}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.513336}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6368A", "G9856T", "C14724T", "C15714T", "C24809T", "G25088T", "A29110T"], "S": ["H1083Y", "V1176F"]}, "labels": {"aa": "S: H1083Y, V1176F"}}}, {"name": "NODE_0000985", "node_attrs": {"div": 9, "num_date": {"value": 2020.2882513661202, "confidence": [2020.268347474002, 2020.2882513661202]}}, "branch_attrs": {"mutations": {"nuc": ["C2094T"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-5021/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.2882513661202, "confidence": [2020.2882513661202, 2020.2882513661202]}, "tsne_y": {"value": -8.538075922859116}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.34"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.5779551508238719}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 5.951893725981065}, "tsne_x": {"value": -12.805804686279863}, "mds3": {"value": 5.743352062493839}, "umap_x": {"value": 12.365993}, "pca2": {"value": -14.523347339333876}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.138014641052187}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.583494}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001416", "node_attrs": {"div": 9, "num_date": {"value": 2020.3261918216165, "confidence": [2020.247219289506, 2020.4201068525101]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-2058/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_y": {"value": -9.605998213080175}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.34"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.2117293352644345}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -5.84058184235501}, "tsne_x": {"value": -11.99109658579393}, "mds3": {"value": 14.251192014548035}, "umap_x": {"value": 10.960351}, "pca2": {"value": -8.493698145206706}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.8405570395994435}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.270542}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "C6726T", "C6781T", "C11747T", "C15960T", "C26333T", "C27549T"]}}}, {"name": "NODE_0000986", "node_attrs": {"div": 24, "num_date": {"value": 2020.9728661042911, "confidence": [2020.785658156796, 2021.058233258125]}}, "branch_attrs": {"mutations": {"nuc": ["A1072G", "C1449T", "A3868T", "G9526T", "G9756A", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "G21974T", "T22912G", "C23604G", "T26767C", "C27297T", "A28271C", "A28877T", "G28878C", "A28911T", "C29303T"], "S": ["D138Y", "N450K", "P681R"]}, "labels": {"aa": "S: D138Y, N450K, P681R"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-A810/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.0972602739726, "confidence": [2021.0972602739726, 2021.0972602739726]}, "tsne_y": {"value": -12.685353787811676}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.528"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -21.91229868071736}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.104476689321136}, "tsne_x": {"value": -14.046481664873752}, "mds3": {"value": 5.610477379822203}, "umap_x": {"value": 8.933092}, "pca2": {"value": -11.539971426171666}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 21.96681661735801}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.005935}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C10728T", "T11482G", "A27983G", "G28378T", "G28727T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AZ68/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.4397260273972, "confidence": [2021.4397260273972, 2021.4397260273972]}, "tsne_y": {"value": -12.69681364275884}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.528"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -23.332311718114365}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.181103373063754}, "tsne_x": {"value": -14.047585568578288}, "mds3": {"value": 3.996703501475385}, "umap_x": {"value": 8.875064}, "pca2": {"value": 1.668537896367816}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 24.00068675816725}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.8680105}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T4930C", "G8027A", "T9898C", "C10401T", "G11083T", "G16629A", "C27635T"]}}}]}]}]}]}]}, {"name": "NODE_0001418", "node_attrs": {"div": 7, "num_date": {"value": 2020.2193446994586, "confidence": [2020.191640894617, 2020.2589672608046]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20VR2719/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.26912568306, "confidence": [2020.26912568306, 2020.26912568306]}, "tsne_y": {"value": -8.444609285895032}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.2618093321431025}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 7.956573381016863}, "tsne_x": {"value": -12.860970051341498}, "mds3": {"value": 5.053378522144767}, "umap_x": {"value": 12.367846}, "pca2": {"value": -3.291417953719526}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0821928767919205}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.62187}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C29722T"]}}}, {"name": "NODE_0001419", "node_attrs": {"div": 7, "num_date": {"value": 2020.2335566935756, "confidence": [2020.1655032919646, 2020.26557936153]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001420", "node_attrs": {"div": 7, "num_date": {"value": 2020.2358674229188, "confidence": [2020.197030022448, 2020.2689873746806]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000952", "node_attrs": {"div": 10, "num_date": {"value": 2020.362328126325, "confidence": [2020.2694727314156, 2020.468021080998]}}, "branch_attrs": {"mutations": {"nuc": ["C3177T", "C16750T", "C29550T"]}}, "children": [{"name": "ARM/UW-ARM11/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.577868852459, "confidence": [2020.577868852459, 2020.577868852459]}, "tsne_y": {"value": -10.000786158119622}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Armenia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.961402906176054}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.6622373980496254}, "tsne_x": {"value": -14.17232581077586}, "mds3": {"value": 9.769451526804394}, "umap_x": {"value": 10.992915}, "pca2": {"value": 30.49923723012005}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.867336168135823}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.313606}, "country": {"value": "Armenia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4990T", "T6649G", "C15279T", "C18060T", "A21611-", "A21612-", "T21613-", "C21614-", "T21615-", "T21616-", "A21617-", "C21618-", "A21619-", "A21620-", "C21621-", "C21622-", "C23059T", "T24506G", "G28221T"], "S": ["N17-", "L18-", "T19-", "T20-", "S982A"]}, "labels": {"aa": "S: N17-, L18-, T19-, T20-, S982A"}}}, {"name": "ARM/UW-ARM27/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6352459016393, "confidence": [2020.6352459016393, 2020.6352459016393]}, "tsne_y": {"value": -9.758063110286493}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Armenia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.614340700295145}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.055070279568902}, "tsne_x": {"value": -13.882469413814505}, "mds3": {"value": 6.812587704245697}, "umap_x": {"value": 11.337471}, "pca2": {"value": 30.425689598207136}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.3584106291376954}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.678437}, "country": {"value": "Armenia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A6366G", "C10369T", "C13356T", "G17211T", "T23590C", "C26464T"]}}}]}, {"name": "NODE_0001423", "node_attrs": {"div": 7, "num_date": {"value": 2020.2436158250669, "confidence": [2020.204404287054, 2020.2743798074564]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000964", "node_attrs": {"div": 8, "num_date": {"value": 2020.3291163484182, "confidence": [2020.2795939608131, 2020.3972336865952]}}, "branch_attrs": {"mutations": {"nuc": ["C18032T"]}}, "children": [{"name": "PAK/SARS-CoV-2_13/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4112021857923, "confidence": [2020.4112021857923, 2020.4112021857923]}, "tsne_y": {"value": -8.172805919354285}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Islamabad Capital Territory"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.1516091426511684}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.162472515513668}, "tsne_x": {"value": -13.402386735437725}, "mds3": {"value": 7.0809606036835255}, "umap_x": {"value": 12.205626}, "pca2": {"value": -19.174395771487376}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.0195231667538569}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.956458}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C313T", "G18105T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-2083/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7254098360656, "confidence": [2020.7254098360656, 2020.7254098360656]}, "tsne_y": {"value": -9.282433083992972}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.57"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.491796183451587}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.348685367508562}, "tsne_x": {"value": -12.46257099851359}, "mds3": {"value": 9.281444036049418}, "umap_x": {"value": 11.853307}, "pca2": {"value": -6.876527187259418}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.322016265434859}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.140581}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3871T", "G13835T", "C20234T", "G23285T", "C29077T"], "S": ["A575S"]}, "labels": {"aa": "S: A575S"}}}]}, {"name": "NODE_0001425", "node_attrs": {"div": 7, "num_date": {"value": 2020.260322157735, "confidence": [2020.209757260995, 2020.2792197934275]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001426", "node_attrs": {"div": 7, "num_date": {"value": 2020.2828465489363, "confidence": [2020.2032532541998, 2020.3163481630247]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000978", "node_attrs": {"div": 10, "num_date": {"value": 2020.4123243131817, "confidence": [2020.3044677432983, 2020.5166880070415]}}, "branch_attrs": {"mutations": {"nuc": ["T19135C", "A22941T", "G26049T"], "S": ["N460I"]}, "labels": {"aa": "S: N460I"}}, "children": [{"name": "ARM/UW-ARM34/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.646174863388, "confidence": [2020.646174863388, 2020.646174863388]}, "tsne_y": {"value": -9.383786232613678}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Armenia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.8237486945973418}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -8.00835712252122}, "tsne_x": {"value": -13.453697482927447}, "mds3": {"value": 8.645309954675838}, "umap_x": {"value": 11.87134}, "pca2": {"value": 30.43625533462368}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.0253276508325628}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.194408}, "country": {"value": "Armenia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C10755T", "G14187A", "G24236T"], "S": ["A892S"]}, "labels": {"aa": "S: A892S"}}}, {"name": "ARM/UW-ARM26/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.629781420765, "confidence": [2020.629781420765, 2020.629781420765]}, "tsne_y": {"value": -10.250629900322997}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.203"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Armenia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 8.075669175736778}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.971881184306831}, "tsne_x": {"value": -13.45597445626645}, "mds3": {"value": 9.090973463787916}, "umap_x": {"value": 10.414536}, "pca2": {"value": 30.43096801160304}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 9.528861769961845}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.600653}, "country": {"value": "Armenia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A4894G", "C4900T", "C15216T", "A17155G", "C19374T", "G19800T", "C23854T", "C28776A", "C29541T"]}}}]}, {"name": "NODE_0000951", "node_attrs": {"div": 10, "num_date": {"value": 2020.364607934204, "confidence": [2020.3328620032617, 2020.3933124863988]}}, "branch_attrs": {"mutations": {"nuc": ["C6312T", "T22334C", "C27630A"], "S": ["W258R"]}, "labels": {"aa": "S: W258R"}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0512/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_y": {"value": -8.734756132031714}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.2499205641644255}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.522328520634632}, "tsne_x": {"value": -13.120375557384142}, "mds3": {"value": 6.893500800179255}, "umap_x": {"value": 12.25159}, "pca2": {"value": 15.92409041060082}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.2037250603525726}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.009869}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-PUC_MVL_0539/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4002732240438, "confidence": [2020.4002732240438, 2020.4002732240438]}, "tsne_y": {"value": -9.056644167937622}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.184771217720257}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.319018711845621}, "tsne_x": {"value": -13.369329936587055}, "mds3": {"value": 7.091782112180592}, "umap_x": {"value": 12.18597}, "pca2": {"value": 14.271954197981}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.8687613230776045}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.703808}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C2156T", "C29370T"]}}}]}]}, {"name": "NODE_0001429", "node_attrs": {"div": 7, "num_date": {"value": 2020.2747563829796, "confidence": [2020.2495142931155, 2020.2827221183563]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001431", "node_attrs": {"div": 7, "num_date": {"value": 2020.2895533983599, "confidence": [2020.2595514903958, 2020.3547978431445]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000937", "node_attrs": {"div": 8, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3215880304326, 2020.3620218579235]}}, "branch_attrs": {"mutations": {"nuc": ["C25344T"], "S": ["S1261F"]}, "labels": {"aa": "S: S1261F"}}, "children": [{"name": "Cat/CHL/UCH_NRL_007/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_y": {"value": -8.450609081978635}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Region Metropolitana de Santiago"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.1778609865709425}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -7.716837692395901}, "tsne_x": {"value": -12.887036807981}, "mds3": {"value": 4.376431265428138}, "umap_x": {"value": 12.388111}, "pca2": {"value": 33.89148140424155}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.2651558226610199}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.625902}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0000938", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4072837156177, 2020.4357923497269]}}, "branch_attrs": {"mutations": {"nuc": ["C14293T", "C18029T", "G29212T"]}}, "children": [{"name": "CHL/Santiago-5120649/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -7.880753797134751}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.5424706572997828}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.994600948879931}, "tsne_x": {"value": -12.7841129435484}, "mds3": {"value": 6.486009584472602}, "umap_x": {"value": 12.272829}, "pca2": {"value": 12.146088908942009}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.0784416561258104}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.842432}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "CHL/Santiago-5092661/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.4357923497269, "confidence": [2020.4357923497269, 2020.4357923497269]}, "tsne_y": {"value": -7.899155731521824}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.618889754138882}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.114228059590353}, "tsne_x": {"value": -12.814678796364268}, "mds3": {"value": 6.437211830921855}, "umap_x": {"value": 12.238259}, "pca2": {"value": 16.512918184071744}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.3037074722458578}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.887584}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0000947", "node_attrs": {"div": 8, "num_date": {"value": 2020.4676276179316, "confidence": [2020.2527292894335, 2020.6917290104423]}}, "branch_attrs": {"mutations": {"nuc": ["T19839C"]}}, "children": [{"name": "CHN/LA-7305/2021", "node_attrs": {"div": 15, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_y": {"value": -9.119219314832524}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.317"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Anhui"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.3097600604655906}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -9.163823607490968}, "tsne_x": {"value": -11.67951299853208}, "mds3": {"value": 13.394841352494028}, "umap_x": {"value": 11.143802}, "pca2": {"value": -19.15102294177596}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.0691997502955202}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.458786}, "country": {"value": "China"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["C147T", "C2091T", "C2836T", "A8360G", "C13860T", "G19999T", "C28905T"]}}}, {"name": "NODE_0000948", "node_attrs": {"div": 9, "num_date": {"value": 2020.517150081795, "confidence": [2020.3122980788132, 2020.720985304517]}}, "branch_attrs": {"mutations": {"nuc": ["A23756G"], "S": ["T732A"]}, "labels": {"aa": "S: T732A"}}, "children": [{"name": "USA/CO-CDPHE-2010226139/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.8073770491803, "confidence": [2020.8073770491803, 2020.8073770491803]}, "tsne_y": {"value": -8.67528096912179}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.98236577202926}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.0466989720557525}, "tsne_x": {"value": -10.396988412631828}, "mds3": {"value": 8.096958063724244}, "umap_x": {"value": 11.044378}, "pca2": {"value": -5.144296596332857}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 7.923860952488924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.39942}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2189T", "G4300T", "G19947T", "A21551T", "C24370T", "G25726T", "G28899T", "C29835T"]}}}, {"name": "NODE_0000949", "node_attrs": {"div": 13, "num_date": {"value": 2020.6999680861425, "confidence": [2020.493126143106, 2020.8266715659443]}}, "branch_attrs": {"mutations": {"nuc": ["C10029T", "G25912T", "A27921G", "G28001T"]}}, "children": [{"name": "USA/CA-CDC-QDX22028081/2021", "node_attrs": {"div": 24, "num_date": {"value": 2021.1164383561643, "confidence": [2021.1164383561643, 2021.1164383561643]}, "tsne_y": {"value": -10.713744529124336}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.841338402801886}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.803698218710065}, "tsne_x": {"value": -11.521185767122027}, "mds3": {"value": 5.742924816669725}, "umap_x": {"value": 9.654744}, "pca2": {"value": -0.199555389567203}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 12.056402370433844}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 12.883614}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6312T", "A6693G", "T7402C", "C9430T", "C10039T", "G19009A", "G21159T", "G27589T", "G27632T", "C27752T", "A27756G"]}}}, {"name": "USA/CA-CZB-24863/2020", "node_attrs": {"div": 22, "num_date": {"value": 2020.97131147541, "confidence": [2020.97131147541, 2020.97131147541]}, "tsne_y": {"value": -10.156501724028006}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.870144157838704}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.730084171738339}, "tsne_x": {"value": -12.063138963282846}, "mds3": {"value": 7.241333163301737}, "umap_x": {"value": 9.920731}, "pca2": {"value": -4.937734713116639}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 12.60398530813712}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.052041}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3774A", "C15738T", "G17721T", "C21642T", "G25567A", "T25569A", "T25570A", "A26108G", "G27670T"], "S": ["A27V"]}, "labels": {"aa": "S: A27V"}}}]}]}]}]}, {"name": "NODE_0001437", "node_attrs": {"div": 7, "num_date": {"value": 2020.2795568810043, "confidence": [2020.258846809474, 2020.288746140665]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000990", "node_attrs": {"div": 8, "num_date": {"value": 2020.4664496746357, "confidence": [2020.317343928055, 2020.790510118787]}}, "branch_attrs": {"mutations": {"nuc": ["G28487A"]}}, "children": [{"name": "Brazil/UW20121622235/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.957650273224, "confidence": [2020.957650273224, 2020.957650273224]}, "tsne_y": {"value": -7.050703000535804}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.28"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.28"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.125795224765396}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -8.057738501867524}, "tsne_x": {"value": -13.4225572709106}, "mds3": {"value": 8.036722595652934}, "umap_x": {"value": 11.388827}, "pca2": {"value": 30.419484797893745}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.683413674245565}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.745709}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T597C", "G4255A", "C15952T", "G25088T", "G28899T", "C29067T", "C29284T"], "S": ["V1176F"]}, "labels": {"aa": "S: V1176F"}}}, {"name": "NZL/21CV0022/2021", "node_attrs": {"div": 17, "num_date": {"value": 2021.004109589041, "confidence": [2021.004109589041, 2021.004109589041]}, "tsne_y": {"value": -9.076830761179416}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.39"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.9546032625559144}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.949656059163068}, "tsne_x": {"value": -11.122090498946733}, "mds3": {"value": 14.086653806848894}, "umap_x": {"value": 10.832212}, "pca2": {"value": -0.2200554253172772}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 5.34540520496925}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.171637}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A1236G", "C3738T", "G9130T", "C16111T", "G22801T", "G23580C", "T27319C", "C28868T", "G29706T"], "S": ["S673T"]}, "labels": {"aa": "S: S673T"}}}]}, {"name": "NODE_0001439", "node_attrs": {"div": 7, "num_date": {"value": 2020.2825432583797, "confidence": [2020.268390319371, 2020.2909836065573]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-PUC_MVL_0183/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.2909836065573, "confidence": [2020.2909836065573, 2020.2909836065573]}, "tsne_y": {"value": -8.454606549469705}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.3401966327699674}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.297228338832177}, "tsne_x": {"value": -12.888133370261729}, "mds3": {"value": 5.596909244482692}, "umap_x": {"value": 12.367492}, "pca2": {"value": 14.339762173959128}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.2126874406694821}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.5956}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C27509T"]}}}, {"name": "NODE_0001440", "node_attrs": {"div": 7, "num_date": {"value": 2020.28793629309, "confidence": [2020.275548022028, 2020.3199059162189]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001441", "node_attrs": {"div": 7, "num_date": {"value": 2020.299630939514, "confidence": [2020.2803153926598, 2020.3265027322404]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU990178", "node_attrs": {"div": 8, "num_date": {"value": 2020.3265027322404, "confidence": [2020.3265027322404, 2020.3265027322404]}, "tsne_y": {"value": -8.487661145981145}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mecca"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.4622029215820181}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.165512953607012}, "tsne_x": {"value": -12.88250973981618}, "mds3": {"value": 5.236417594469898}, "umap_x": {"value": 12.406077}, "pca2": {"value": -19.1810370990488}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.490444047110954}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.64473}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["T3037C"]}}}, {"name": "CHL/Santiago-PUC_MVL_0305/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.353825136612, "confidence": [2020.353825136612, 2020.353825136612]}, "tsne_y": {"value": -8.463061654233979}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.0980638364373523}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.297610787908629}, "tsne_x": {"value": -12.892211973618556}, "mds3": {"value": 5.293730783859869}, "umap_x": {"value": 12.410199}, "pca2": {"value": 14.340588596500696}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.1410559255409806}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.654776}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["A27137G"]}}}]}, {"name": "NODE_0001442", "node_attrs": {"div": 7, "num_date": {"value": 2020.3037435094614, "confidence": [2020.280223122249, 2020.3237704918033]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "CHL/Santiago-JDP7073/2020", "node_attrs": {"div": 7, "num_date": {"value": 2020.3237704918033, "confidence": [2020.3237704918033, 2020.3237704918033]}, "tsne_y": {"value": -8.51203415920474}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Chile"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.6341446432154966}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.997955957055632}, "tsne_x": {"value": -12.84958556434071}, "mds3": {"value": 5.484903003752755}, "umap_x": {"value": 12.38245}, "pca2": {"value": 11.968663599294858}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0790270334544762}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.60957}, "country": {"value": "Chile"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001443", "node_attrs": {"div": 7, "num_date": {"value": 2020.322911697229, "confidence": [2020.2945543769015, 2020.3878564038084]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_NILMRC_198/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_y": {"value": -8.965088491311379}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.6243830122267844}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.162844995264278}, "tsne_x": {"value": -13.515670231841446}, "mds3": {"value": 7.006745690620314}, "umap_x": {"value": 12.104064}, "pca2": {"value": -19.1662737329414}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.7338458744023203}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.511572}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C2453T", "T10371G", "C14119T", "G26199T", "G28321T"]}}}, {"name": "NODE_0001444", "node_attrs": {"div": 7, "num_date": {"value": 2020.3259466707973, "confidence": [2020.3060558697032, 2020.3951039556655]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001445", "node_attrs": {"div": 7, "num_date": {"value": 2020.3389205666901, "confidence": [2020.313671313627, 2020.3971554261716]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "TUN/TUN_ADAGE_9-12622/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7199453551912, "confidence": [2020.7199453551912, 2020.7199453551912]}, "tsne_y": {"value": -10.056990872167177}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.198"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tunisia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -7.037758234698311}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.707116390067888}, "tsne_x": {"value": -12.912579903806684}, "mds3": {"value": 11.259907273126297}, "umap_x": {"value": 10.233906}, "pca2": {"value": -15.638138176983231}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 12.574050874375752}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.371712}, "country": {"value": "Tunisia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T505C", "G872T", "G2144T", "G3122T", "C3261T", "A15984T", "C20946T", "C22075T", "C27945T", "G29468T", "G29648T", "C29750T"]}}}, {"name": "NODE_0001446", "node_attrs": {"div": 7, "num_date": {"value": 2020.3571539830343, "confidence": [2020.3122816203017, 2020.3961285181579]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKPU-00072/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.545081967213, "confidence": [2020.545081967213, 2020.545081967213]}, "tsne_y": {"value": -9.615478224520125}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.63"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.9032748153988184}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.948861979594149}, "tsne_x": {"value": -12.888760001610777}, "mds3": {"value": 9.458072045897444}, "umap_x": {"value": 11.647137}, "pca2": {"value": -0.2454069790235297}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.5219209635185806}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.979998}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2973T", "C20312T", "C21597T", "G25785T", "C27925T", "C28308G", "C29144T"], "S": ["S12F"]}, "labels": {"aa": "S: S12F"}}}, {"name": "NODE_0001447", "node_attrs": {"div": 7, "num_date": {"value": 2020.364233954134, "confidence": [2020.3148575721834, 2020.4022906555488]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TN-SPHL-01374/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5232240437158, "confidence": [2020.5232240437158, 2020.5232240437158]}, "tsne_y": {"value": -7.571658393500846}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.231"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Tennessee"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 2.923433267659408}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 24.32962998398338}, "tsne_x": {"value": -13.72039638809076}, "mds3": {"value": 1.7269537520090623}, "umap_x": {"value": 12.24101}, "pca2": {"value": 22.76192152007076}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.5648192246941925}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.935416}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T16773C", "A21625G", "G21901A", "A25505C", "G26167A", "G28857T"]}}}, {"name": "NODE_0001448", "node_attrs": {"div": 7, "num_date": {"value": 2020.3733973922544, "confidence": [2020.317817737817, 2020.4152378332838]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OV081785", "node_attrs": {"div": 8, "num_date": {"value": 2020.4603825136612, "confidence": [2020.4603825136612, 2020.4603825136612]}, "tsne_y": {"value": -8.494280326116801}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Mecca"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.5133386321621536}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.163994512551504}, "tsne_x": {"value": -12.904616789596991}, "mds3": {"value": 5.848760129451297}, "umap_x": {"value": 12.321945}, "pca2": {"value": -19.175379609316703}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0122522050165529}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.404125}, "country": {"value": "Saudi Arabia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["A1002G"]}}}, {"name": "MW294007", "node_attrs": {"div": 22, "num_date": {"value": 2020.5505464480875, "confidence": [2020.5505464480875, 2020.5505464480875]}, "tsne_y": {"value": -10.290405450044494}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.161"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Ecuador"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.8349652040980169}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.132070185352209}, "tsne_x": {"value": -12.208033211950305}, "mds3": {"value": 6.321850264512556}, "umap_x": {"value": 9.959129}, "pca2": {"value": -19.13830092252781}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 18.169124633943227}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.079135}, "country": {"value": "Ecuador"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1323T", "C3923T", "G14126A", "C15857T", "G20808A", "G22249T", "T22618G", "G23403A", "G23465A", "C23854T", "T27184C", "A27891T", "A28025G", "C28253T", "G28954A"], "S": ["L229F", "G614D", "V635I"]}, "labels": {"aa": "S: L229F, G614D, V635I"}}}]}]}]}]}, {"name": "NODE_0001449", "node_attrs": {"div": 7, "num_date": {"value": 2020.362358497201, "confidence": [2020.2638842721014, 2020.464230654242]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-DSHS-2485/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_y": {"value": -8.601435365805047}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.135"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Texas"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": -0.0346673400736865}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 39.25798487765838}, "tsne_x": {"value": -12.92757552868065}, "mds3": {"value": 5.356886441632257}, "umap_x": {"value": 12.311619}, "pca2": {"value": -1.5550368397727743}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.1038836936760037}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.216381}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C10376T", "C25584T"]}}}, {"name": "NODE_0001450", "node_attrs": {"div": 7, "num_date": {"value": 2020.3890208139594, "confidence": [2020.2639800548366, 2020.4781190164654]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "ARM/UW-ARM1/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5724043715848, "confidence": [2020.5724043715848, 2020.5724043715848]}, "tsne_y": {"value": -7.335230313277981}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Armenia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.523321274386872}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -8.039520074274597}, "tsne_x": {"value": -12.629437374269171}, "mds3": {"value": 5.726879459262582}, "umap_x": {"value": 11.9799595}, "pca2": {"value": 30.422718087978687}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.8252568527887277}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.329739}, "country": {"value": "Armenia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["T493A", "G9190T", "G19086T", "C21772T", "T22863C", "G26062T"], "S": ["I434T"]}, "labels": {"aa": "S: I434T"}}}, {"name": "NODE_0001451", "node_attrs": {"div": 7, "num_date": {"value": 2020.422433549476, "confidence": [2020.2329341668012, 2020.557619846477]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001452", "node_attrs": {"div": 7, "num_date": {"value": 2020.4625724552334, "confidence": [2020.2324319755326, 2020.557454935487]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WI-UW-1887/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_y": {"value": -9.686406057795946}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Wisconsin"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -4.33840987736528}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.9466905919845927}, "tsne_x": {"value": -11.862371364643376}, "mds3": {"value": 11.185653276474}, "umap_x": {"value": 10.583675}, "pca2": {"value": -0.2449165075068082}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.779308068123148}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.862519}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1288T", "G4973A", "C11050T", "C13426T", "C14937T", "C21811T", "G21893A", "C22783T", "C24797T", "C24904T", "A29056G"], "S": ["D111N", "P1079S"]}, "labels": {"aa": "S: D111N, P1079S"}}}, {"name": "NODE_0000963", "node_attrs": {"div": 12, "num_date": {"value": 2020.6732524041677, "confidence": [2020.5809001742643, 2020.7223779314234]}}, "branch_attrs": {"mutations": {"nuc": ["G1042A", "C1427T", "A3472G", "C12253T", "G19656A"]}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-3519/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.7745901639344, "confidence": [2020.7745901639344, 2020.7745901639344]}, "tsne_y": {"value": -8.874520540213311}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.507"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.1165033509674072}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 5.601593178906772}, "tsne_x": {"value": -12.07381785099087}, "mds3": {"value": 9.369520525979269}, "umap_x": {"value": 11.882691}, "pca2": {"value": -10.599512359209625}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.0906089719376368}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.1707945}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GS-2092/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.733606557377, "confidence": [2020.733606557377, 2020.733606557377]}, "tsne_y": {"value": -9.6095886813628}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.507"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.2276098797187844}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "7"}, "pca1": {"value": -5.6438973952626}, "tsne_x": {"value": -8.682137658087152}, "mds3": {"value": 2.5062318973031967}, "umap_x": {"value": 7.5435915}, "pca2": {"value": -8.073510732537102}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.166930421385039}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.839724}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "7"}}, "branch_attrs": {"mutations": {"nuc": ["A28881G", "A28882G", "C28883G"]}}}]}]}, {"name": "NODE_0001454", "node_attrs": {"div": 7, "num_date": {"value": 2020.462750155369, "confidence": [2020.2042992770646, 2020.5722821955676]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-CZB-11270/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.6953551912568, "confidence": [2020.6953551912568, 2020.6953551912568]}, "tsne_y": {"value": -9.132847171260968}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.205"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.2047236912976502}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -6.630346480637495}, "tsne_x": {"value": -13.71388078993153}, "mds3": {"value": 9.93307155793494}, "umap_x": {"value": 11.806459}, "pca2": {"value": -9.763157599680923}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.1338173791535848}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.070985}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G5539A", "C6578T", "G21468A", "C25318T", "C26768T", "T27113G"]}}}, {"name": "NODE_0001456", "node_attrs": {"div": 7, "num_date": {"value": 2020.503406859513, "confidence": [2020.1872235016322, 2020.6972551850047]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001458", "node_attrs": {"div": 7, "num_date": {"value": 2020.5275328969333, "confidence": [2020.1876051007682, 2020.7047212353073]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0499/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.8155737704917, "confidence": [2020.8155737704917, 2020.8155737704917]}, "tsne_y": {"value": -9.121343235385863}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 6.908104007659618}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.949422156586899}, "tsne_x": {"value": -11.838807382446976}, "mds3": {"value": 7.171246874621111}, "umap_x": {"value": 11.6211605}, "pca2": {"value": 11.72668864303551}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.566919575855955}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.941665}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C1648T", "G1738T", "T4330C", "C13554T", "A17082G", "C22713T", "C23604A", "A29437G"], "S": ["P384L", "P681H"]}, "labels": {"aa": "S: P384L, P681H"}}}, {"name": "SouthAfrica/NHLS-UCT-GS-0712/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.7800546448088, "confidence": [2020.7800546448088, 2020.7800546448088]}, "tsne_y": {"value": -7.196566820477011}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.252925270839125}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.243323852472267}, "tsne_x": {"value": -13.18010562648518}, "mds3": {"value": 5.730280444405975}, "umap_x": {"value": 11.820656}, "pca2": {"value": -3.248054309141628}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.0124779738062804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.134169}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C5144T", "G9805T", "G17721T", "G26158T", "G26769A", "G29540T", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-", "T29760-"]}}}]}, {"name": "NODE_0001462", "node_attrs": {"div": 7, "num_date": {"value": 2020.5279045369364, "confidence": [2020.187429900186, 2020.6991132029725]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NY-PV21701/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.801912568306, "confidence": [2020.801912568306, 2020.801912568306]}, "tsne_y": {"value": -7.344183418655715}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.329"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.4507541368183191}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.847347642983005}, "tsne_x": {"value": -12.586516352295533}, "mds3": {"value": 9.497088312297516}, "umap_x": {"value": 11.859063}, "pca2": {"value": 11.32662794683229}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.3874880851280476}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.178262}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A2132C", "A3277G", "A10323G", "G10360A", "C17977T", "A29413T"]}}}, {"name": "NODE_0001463", "node_attrs": {"div": 7, "num_date": {"value": 2020.5419907124294, "confidence": [2020.1893463945225, 2020.704126576244]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-0656/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.8073770491803, "confidence": [2020.8073770491803, 2020.8073770491803]}, "tsne_y": {"value": -8.966331020651879}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.196897035182409}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -4.9376434722451}, "tsne_x": {"value": -12.162362260127294}, "mds3": {"value": 9.367040065250311}, "umap_x": {"value": 11.867821}, "pca2": {"value": -5.584358433710939}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.6208798546335009}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.194825}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G526T", "C3045T", "T12503C", "C27213T", "C29451T", "C29721T"]}}}, {"name": "NODE_0001464", "node_attrs": {"div": 7, "num_date": {"value": 2020.56898933042, "confidence": [2020.188549040635, 2020.703925029948]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001465", "node_attrs": {"div": 7, "num_date": {"value": 2020.5899785988327, "confidence": [2020.1881447819624, 2020.7089074594755]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WI-CDC-4065214-001/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.8975409836066, "confidence": [2020.8975409836066, 2020.8975409836066]}, "tsne_y": {"value": -9.929474019043049}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.859199171321024}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "6"}, "pca1": {"value": -6.480273503158372}, "tsne_x": {"value": -12.564110758025793}, "mds3": {"value": 14.328370580571477}, "umap_x": {"value": 10.993483}, "pca2": {"value": -8.090261596250311}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -2.7201836503447594}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.297452}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "6"}}, "branch_attrs": {"mutations": {"nuc": ["G213T", "G9190A", "G13723T", "G16110A", "T19287C", "C22444T", "C26625T", "G29688T", "C29708T"]}}}, {"name": "NODE_0001261", "node_attrs": {"div": 25, "num_date": {"value": 2021.0501042270391, "confidence": [2020.8947256545664, 2021.1210631060414]}}, "branch_attrs": {"mutations": {"nuc": ["A3852T", "C3961T", "G7798T", "C9072T", "C9891T", "C10116T", "T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "G20578A", "C21846T", "T21992-", "A21993-", "T21994-", "G23012A", "T23287C", "C23604A", "G23948C", "C24382T", "C25276A", "T26767C", "A27887-", "A27888-", "C27889-", "G27890-", "A27891-", "A27892-", "C27893-", "A27894-", "T27895-", "G27896-", "A27897-", "A27898-", "A27899-", "T27900-", "T27901-", "G28209T", "A28271G", "C28896-", "T28897-", "A28898-", "C29769T"], "S": ["T95I", "Y144-", "E484K", "P681H", "D796H"]}, "labels": {"aa": "S: T95I, Y144-, E484K, P681H, D796H"}}, "children": [{"name": "NGA/CV1255/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2068493150684, "confidence": [2021.2068493150684, 2021.2068493150684]}, "tsne_y": {"value": -5.805819685143339}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.318"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -24.369136820143886}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 1.1392756522666598}, "tsne_x": {"value": -9.811205429053532}, "mds3": {"value": 6.977729140051292}, "umap_x": {"value": 8.840524}, "pca2": {"value": 7.000028924184164}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 26.555934305069467}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.702257}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A235T", "G4180T", "A4574C", "C10189T", "G17122T", "G18498T", "C21614T", "G25687T"], "S": ["L18F"]}, "labels": {"aa": "S: L18F"}}}, {"name": "GAB/5161_Gabon/2021", "node_attrs": {"div": 31, "num_date": {"value": 2021.3246575342466, "confidence": [2021.3246575342466, 2021.3246575342466]}, "tsne_y": {"value": -5.807067876739824}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.318"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Gabon"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 24.10763075826509}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 9.854603902942054}, "tsne_x": {"value": -9.822938152398914}, "mds3": {"value": 7.966410328737193}, "umap_x": {"value": 8.95854}, "pca2": {"value": 12.129887532567713}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 15.151129616404836}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 11.949937}, "country": {"value": "Gabon"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G1439T", "A6022G", "T17497C", "C22432T", "C23191T", "C25046T"], "S": ["P1162S"]}, "labels": {"aa": "S: P1162S"}}}]}]}, {"name": "NODE_0001468", "node_attrs": {"div": 7, "num_date": {"value": 2020.5912912100114, "confidence": [2020.1887606824855, 2020.7106761324803]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/20CV0631/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.9166666666667, "confidence": [2020.9166666666667, 2020.9166666666667]}, "tsne_y": {"value": -9.066936192069942}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.416"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.248897404751095}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.943832760850421}, "tsne_x": {"value": -11.594940767431432}, "mds3": {"value": 10.22580000891572}, "umap_x": {"value": 11.130398}, "pca2": {"value": -0.2423840651418867}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -3.5576999596625454}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.451096}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C392T", "C1572T", "C6990T", "C13011T", "C16386T", "C20762T", "C21575T", "C22987T", "C26060T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0001470", "node_attrs": {"div": 7, "num_date": {"value": 2020.630768565379, "confidence": [2020.1866822966908, 2020.712298207029]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC488b/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.9030054644809, "confidence": [2020.9030054644809, 2020.9030054644809]}, "tsne_y": {"value": -10.317471012835185}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.671579748786356}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.630357422472796}, "tsne_x": {"value": -12.795247348974591}, "mds3": {"value": 13.555841280588377}, "umap_x": {"value": 10.859354}, "pca2": {"value": -3.712673876533233}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -5.312534096723518}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.154412}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2005T", "G2599A", "C3267T", "C3874T", "C5025T", "C5700A", "C18377T", "C26735T", "A26924G", "C27297T"]}}}, {"name": "NODE_0001472", "node_attrs": {"div": 7, "num_date": {"value": 2020.6336846283373, "confidence": [2020.1908945348964, 2020.7400426336476]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0047/2021", "node_attrs": {"div": 14, "num_date": {"value": 2021.0150684931507, "confidence": [2021.0150684931507, 2021.0150684931507]}, "tsne_y": {"value": -7.272454131931935}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Canterbury"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 5.929183371567725}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 8.290967151177624}, "tsne_x": {"value": -13.481140426161852}, "mds3": {"value": 5.798807051195107}, "umap_x": {"value": 12.018444}, "pca2": {"value": 0.7845920495423775}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -1.3707895595068644}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.41251}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T2839C", "A11201G", "C14372T", "C15714T", "C18646T", "T22020C", "C28102T"], "S": ["M153T"]}, "labels": {"aa": "S: M153T"}}}, {"name": "Peru/PE-LMA-UW21011943966/2021", "node_attrs": {"div": 21, "num_date": {"value": 2021.0506849315068, "confidence": [2021.0506849315068, 2021.0506849315068]}, "tsne_y": {"value": -9.818000697544486}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.348"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -9.431951985385256}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -7.137052402150909}, "tsne_x": {"value": -13.932086827606332}, "mds3": {"value": 14.998620272496494}, "umap_x": {"value": 10.1606045}, "pca2": {"value": 36.17355093155585}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 10.68091600475793}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.323346}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A3790T", "G6362A", "C6541T", "C7955T", "G9802T", "G11417T", "T15642C", "C17550T", "G24197T", "G25062C", "C25521T", "G25913A", "C28278A", "C29370T"], "S": ["A879S", "G1167A"]}, "labels": {"aa": "S: A879S, G1167A"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001070", "node_attrs": {"div": 8, "num_date": {"value": 2020.2606775467723, "confidence": [2020.190828851907, 2020.3240584066505]}}, "branch_attrs": {"mutations": {"nuc": ["A1163T"]}}, "children": [{"name": "AUS/VIC1609/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.3620218579235, "confidence": [2020.3620218579235, 2020.3620218579235]}, "tsne_y": {"value": -8.41067983176705}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.9769183347389814}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": 6.691064311854354}, "tsne_x": {"value": -13.655590209478412}, "mds3": {"value": 6.433173996181065}, "umap_x": {"value": 12.245718}, "pca2": {"value": -7.64489676673399}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.423264144181037}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.893617}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G343T", "C3961T", "G12170A"]}}}, {"name": "NODE_0001475", "node_attrs": {"div": 8, "num_date": {"value": 2020.2790367732277, "confidence": [2020.1893249224677, 2020.3329696950682]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001476", "node_attrs": {"div": 8, "num_date": {"value": 2020.289369179403, "confidence": [2020.1919635481888, 2020.3374316939892]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Bangladesh/ECHD_00270/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.3374316939892, "confidence": [2020.3374316939892, 2020.3374316939892]}, "tsne_y": {"value": -8.200634475903897}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Dhaka"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.3039014457804728}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.155159245285829}, "tsne_x": {"value": -13.344666124392054}, "mds3": {"value": 6.243012148055779}, "umap_x": {"value": 12.269172}, "pca2": {"value": -4.557394686174511}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.15809525529844}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.023756}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C4002T", "G24193T"]}}}, {"name": "NODE_0001477", "node_attrs": {"div": 8, "num_date": {"value": 2020.301129836971, "confidence": [2020.194199466575, 2020.3505104768958]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/DNAS_isl_4/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.3784153005465, "confidence": [2020.3784153005465, 2020.3784153005465]}, "tsne_y": {"value": -8.316559196992916}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.303263044624551}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.881093781001755}, "tsne_x": {"value": -14.173264138183567}, "mds3": {"value": 6.955083198112283}, "umap_x": {"value": 12.053909}, "pca2": {"value": -7.537671376645251}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.4125207928452086}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.376696}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "G2036T", "C12084T", "C21691T", "C22000G"], "S": ["H146Q"]}, "labels": {"aa": "S: H146Q"}}}, {"name": "Bangladesh/ECHD_00462/2020", "node_attrs": {"div": 9, "num_date": {"value": 2020.3565573770493, "confidence": [2020.3565573770493, 2020.3565573770493]}, "tsne_y": {"value": -8.41681406702085}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Dhaka"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.5118666470959972}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -4.914163993431635}, "tsne_x": {"value": -13.213426788695866}, "mds3": {"value": 5.350399811719546}, "umap_x": {"value": 12.343681}, "pca2": {"value": -3.8857297449427888}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.5632575666745493}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.53845}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G29777T"]}}}]}]}, {"name": "NODE_0001478", "node_attrs": {"div": 8, "num_date": {"value": 2020.2894337225073, "confidence": [2020.1952632632724, 2020.353464296706]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001479", "node_attrs": {"div": 8, "num_date": {"value": 2020.3629475023345, "confidence": [2020.2748994685899, 2020.4456672921478]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001480", "node_attrs": {"div": 8, "num_date": {"value": 2020.4646961841327, "confidence": [2020.3808510152373, 2020.4685792349726]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_NILMRC_196/2020", "node_attrs": {"div": 8, "num_date": {"value": 2020.4685792349726, "confidence": [2020.4685792349726, 2020.4685792349726]}, "tsne_y": {"value": -8.433456163648092}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.1488260993111305}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.172866766323285}, "tsne_x": {"value": -13.126153216108388}, "mds3": {"value": 5.284371475992114}, "umap_x": {"value": 12.399714}, "pca2": {"value": -19.19155293684776}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.4376037567495601}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.589409}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC10811/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.6680327868853, "confidence": [2020.6680327868853, 2020.6680327868853]}, "tsne_y": {"value": -8.293598272468461}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.984856209307119}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -2.1245828661473327}, "tsne_x": {"value": -13.89518538502305}, "mds3": {"value": 6.629263090914366}, "umap_x": {"value": 12.186038}, "pca2": {"value": -4.187143368266679}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.722329149754641}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.754314}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C506T", "C7600T", "G7798T", "T23548C"]}}}]}, {"name": "NODE_0001481", "node_attrs": {"div": 8, "num_date": {"value": 2020.3671015710088, "confidence": [2020.291893992188, 2020.4557087358046]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_NILMRC_145/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.4631147540983, "confidence": [2020.4631147540983, 2020.4631147540983]}, "tsne_y": {"value": -8.328053718781987}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.983967371102012}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.177376475420214}, "tsne_x": {"value": -13.917058317050351}, "mds3": {"value": 7.327392822668536}, "umap_x": {"value": 12.10059}, "pca2": {"value": -19.19218537662955}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 1.9686559197327809}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.519411}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C3784T", "C6807T", "T21760C", "C25416T"]}}}, {"name": "BGD/BCSIR_NILMRC_249/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.5150273224044, "confidence": [2020.5150273224044, 2020.5150273224044]}, "tsne_y": {"value": -8.399005555511664}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.167561065662521}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -9.173057307185744}, "tsne_x": {"value": -13.44119801357866}, "mds3": {"value": 6.822011088536958}, "umap_x": {"value": 12.250211}, "pca2": {"value": -19.191596202077463}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.8927926628804863}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.995946}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "A8026G"]}}}]}]}, {"name": "NODE_0001482", "node_attrs": {"div": 8, "num_date": {"value": 2020.300919800714, "confidence": [2020.1961028289572, 2020.356542357734]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/BCSIR_NILMRC_237/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5122950819673, "confidence": [2020.5122950819673, 2020.5122950819673]}, "tsne_y": {"value": -8.380257241067818}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.25"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Dhaka"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1.25"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.0876001417923664}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -9.15451296427527}, "tsne_x": {"value": -14.758006713474463}, "mds3": {"value": 12.087830316732616}, "umap_x": {"value": 11.142226}, "pca2": {"value": -19.19101641152152}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 3.9806775852369647}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.443173}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2040T", "C2910T", "C5869T", "C6310T", "G19723T", "A22330G", "C24919T", "C25504G"]}}}, {"name": "NODE_0001079", "node_attrs": {"div": 13, "num_date": {"value": 2020.3912665435246, "confidence": [2020.3578158457956, 2020.4030054644809]}}, "branch_attrs": {"mutations": {"nuc": ["T7540C", "G16647T", "C18555T", "G22992A", "G23401A"], "S": ["S477N"]}, "labels": {"aa": "S: S477N"}}, "children": [{"name": "AUS/VIC1970/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4030054644809, "confidence": [2020.4030054644809, 2020.4030054644809]}, "tsne_y": {"value": -7.3480166711957}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.8388831733134452}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.889527598593729}, "tsne_x": {"value": -18.426268973825227}, "mds3": {"value": 7.52815028824167}, "umap_x": {"value": 12.261292}, "pca2": {"value": -5.204265228325466}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.049026355792619}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.384191}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001484", "node_attrs": {"div": 13, "num_date": {"value": 2020.3993208478776, "confidence": [2020.365835591566, 2020.4540253483044]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001094", "node_attrs": {"div": 15, "num_date": {"value": 2020.4656370541559, "confidence": [2020.4158385454277, 2020.560316697388]}}, "branch_attrs": {"mutations": {"nuc": ["C25521T", "C28253T"]}}, "children": [{"name": "AUS/VIC14406/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.6243169398906, "confidence": [2020.6243169398906, 2020.6243169398906]}, "tsne_y": {"value": -6.405211311894435}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.062216992222264}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.875465845635841}, "tsne_x": {"value": -18.4352257460303}, "mds3": {"value": 8.59213107071811}, "umap_x": {"value": 10.598394}, "pca2": {"value": -5.181156631623831}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 15.346405594626718}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.362867}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2106T", "G3564T", "G11535T", "G14277T", "G24933T", "G28517T"], "S": ["G1124V"]}, "labels": {"aa": "S: G1124V"}}}, {"name": "AUS/VIC9133/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6051912568305, "confidence": [2020.6051912568305, 2020.6051912568305]}, "tsne_y": {"value": -6.755033141136383}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.793656310192937}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.994620094709878}, "tsne_x": {"value": -18.450991451286665}, "mds3": {"value": 6.672149308563701}, "umap_x": {"value": 11.527507}, "pca2": {"value": -5.754171894588683}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 10.049319911581614}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.896449}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4965T", "T24256C", "T26311C"]}}}]}, {"name": "NODE_0001495", "node_attrs": {"div": 13, "num_date": {"value": 2020.408784548285, "confidence": [2020.3744737997392, 2020.4589971970136]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001496", "node_attrs": {"div": 13, "num_date": {"value": 2020.4200808071746, "confidence": [2020.3826490413603, 2020.4681850991863]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001127", "node_attrs": {"div": 14, "num_date": {"value": 2020.5136405892176, "confidence": [2020.4037171832647, 2020.6320191270033]}}, "branch_attrs": {"mutations": {"nuc": ["C5144T"]}}, "children": [{"name": "NODE_0001128", "node_attrs": {"div": 16, "num_date": {"value": 2020.6734239971033, "confidence": [2020.5748445534894, 2020.7196645859465]}}, "branch_attrs": {"mutations": {"nuc": ["T21925C", "A26759T"]}}, "children": [{"name": "AUS/VIC15685/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.7554644808743, "confidence": [2020.7554644808743, 2020.7554644808743]}, "tsne_y": {"value": -7.231008417765135}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.8483046272512469}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.807719116437883}, "tsne_x": {"value": -19.09623286208344}, "mds3": {"value": 9.367666701138983}, "umap_x": {"value": 11.01319}, "pca2": {"value": -4.994541310363845}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 11.424843009478623}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.596123}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["A7522G", "C15540T"]}}}, {"name": "AUS/VIC14368/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7199453551912, "confidence": [2020.7199453551912, 2020.7199453551912]}, "tsne_y": {"value": -7.243772736632959}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.151543938565842}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.496553468817687}, "tsne_x": {"value": -18.964950923288608}, "mds3": {"value": 8.191036284708078}, "umap_x": {"value": 11.590268}, "pca2": {"value": -3.015058778060742}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 9.32521661291094}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.936638}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C3624A"]}}}]}, {"name": "NODE_0001129", "node_attrs": {"div": 19, "num_date": {"value": 2020.7503678071278, "confidence": [2020.6901209182543, 2020.7636612021859]}}, "branch_attrs": {"mutations": {"nuc": ["G7328T", "C10681T", "A16172G", "T21369C", "T28009C"]}}, "children": [{"name": "AUS/VIC15870/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.7636612021859, "confidence": [2020.7636612021859, 2020.7636612021859]}, "tsne_y": {"value": -7.16530794719392}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.9415357530052948}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.964127345191734}, "tsne_x": {"value": -19.280003385876416}, "mds3": {"value": 9.833505987271575}, "umap_x": {"value": 10.855145}, "pca2": {"value": -5.625361724501191}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 12.75197262250891}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.538279}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC16215/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.76912568306, "confidence": [2020.76912568306, 2020.76912568306]}, "tsne_y": {"value": -7.1670729578569015}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.097546939284531}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.581982313980268}, "tsne_x": {"value": -19.382014305276613}, "mds3": {"value": 9.214677816505269}, "umap_x": {"value": 10.785344}, "pca2": {"value": -3.579868512408871}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 13.14611458829571}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.463285}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C6568T"]}}}]}]}, {"name": "NODE_0001500", "node_attrs": {"div": 13, "num_date": {"value": 2020.4330433423272, "confidence": [2020.3872198867032, 2020.4722402724187]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001123", "node_attrs": {"div": 14, "num_date": {"value": 2020.4849726775956, "confidence": [2020.457360409985, 2020.4849726775956]}}, "branch_attrs": {"mutations": {"nuc": ["C28961T"]}}, "children": [{"name": "AUS/VIC2366/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4849726775956, "confidence": [2020.4849726775956, 2020.4849726775956]}, "tsne_y": {"value": -7.337012220068206}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.841422255246541}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": 2.1978905599459706}, "tsne_x": {"value": -18.48180486156607}, "mds3": {"value": 7.398116253749309}, "umap_x": {"value": 12.294011}, "pca2": {"value": -6.35429648281653}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.70598910688956}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.393039}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC7210/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4849726775956, "confidence": [2020.4849726775956, 2020.4849726775956]}, "tsne_y": {"value": -7.339041474043137}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.0617422381573136}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.179758097901101}, "tsne_x": {"value": -18.48236775221296}, "mds3": {"value": 7.880857123435872}, "umap_x": {"value": 12.318485}, "pca2": {"value": -2.9645028921707235}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.568030023441674}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.39678}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001110", "node_attrs": {"div": 14, "num_date": {"value": 2020.4773416082292, "confidence": [2020.451190935686, 2020.4822404371585]}}, "branch_attrs": {"mutations": {"nuc": ["C18568T"]}}, "children": [{"name": "AUS/VIC2332/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_y": {"value": -7.333476679093732}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.4204019336321467}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.889638614009954}, "tsne_x": {"value": -18.47337999838468}, "mds3": {"value": 7.048161050930005}, "umap_x": {"value": 12.342374}, "pca2": {"value": -5.204439642328098}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.591183158230009}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.421604}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001505", "node_attrs": {"div": 14, "num_date": {"value": 2020.49043715847, "confidence": [2020.4685889275095, 2020.49043715847]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC2506/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.49043715847, "confidence": [2020.49043715847, 2020.49043715847]}, "tsne_y": {"value": -7.331095380763247}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.7519861516897757}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.880900400714269}, "tsne_x": {"value": -18.476233195704268}, "mds3": {"value": 7.507403321411836}, "umap_x": {"value": 12.284562}, "pca2": {"value": -5.898860971330754}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.818269991916745}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.366208}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC8208/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5969945355191, "confidence": [2020.5969945355191, 2020.5969945355191]}, "tsne_y": {"value": -7.339412468909068}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.0255068923262736}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -5.094421868950648}, "tsne_x": {"value": -18.47003224913358}, "mds3": {"value": 7.984137907835937}, "umap_x": {"value": 12.206617}, "pca2": {"value": -6.0865604380371}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 6.022037410143727}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.322542}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001506", "node_attrs": {"div": 13, "num_date": {"value": 2020.4164241698022, "confidence": [2020.3840834795635, 2020.465792859082]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001508", "node_attrs": {"div": 13, "num_date": {"value": 2020.4303902055647, "confidence": [2020.3877702523023, 2020.4881737903445]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001086", "node_attrs": {"div": 14, "num_date": {"value": 2020.4950646428158, "confidence": [2020.4268691369841, 2020.5654708940965]}}, "branch_attrs": {"mutations": {"nuc": ["A17337G"]}}, "children": [{"name": "NODE_0001510", "node_attrs": {"div": 14, "num_date": {"value": 2020.520367460635, "confidence": [2020.4298958074196, 2020.5896571129447]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC10491/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6707650273224, "confidence": [2020.6707650273224, 2020.6707650273224]}, "tsne_y": {"value": -7.754953342544902}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.0935905039339506}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -6.926787110012768}, "tsne_x": {"value": -18.4188046048532}, "mds3": {"value": 9.40121221597064}, "umap_x": {"value": 11.387291}, "pca2": {"value": -10.075147293007523}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 9.78117210658003}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.804389}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C920T", "C9474T", "G25947T"]}}}, {"name": "AUS/VIC14039/2020", "node_attrs": {"div": 20, "num_date": {"value": 2020.7117486338798, "confidence": [2020.7117486338798, 2020.7117486338798]}, "tsne_y": {"value": -8.152681975108045}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.057748995890273}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.855982485822677}, "tsne_x": {"value": -18.438453656613063}, "mds3": {"value": 11.378773487273843}, "umap_x": {"value": 10.692255}, "pca2": {"value": -8.249248618984794}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 14.06436886706816}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.429794}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G6485A", "C9603T", "G11083T", "C16222T", "C22858T", "C24034T"]}}}]}, {"name": "NODE_0001088", "node_attrs": {"div": 15, "num_date": {"value": 2020.5724043715848, "confidence": [2020.5171014956795, 2020.5724043715848]}}, "branch_attrs": {"mutations": {"nuc": ["C23655T"], "S": ["S698L"]}, "labels": {"aa": "S: S698L"}}, "children": [{"name": "AUS/VIC16243/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.6844262295083, "confidence": [2020.6844262295083, 2020.6844262295083]}, "tsne_y": {"value": -8.01220330005218}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -2.0497426230409355}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.785825363935355}, "tsne_x": {"value": -18.32445941756093}, "mds3": {"value": 12.371503403013364}, "umap_x": {"value": 10.797732}, "pca2": {"value": -4.989163176135801}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 11.834251498300524}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.451856}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G3164A", "C17339T", "A27237T", "G27676C"]}}}, {"name": "AUS/VIC13201/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5724043715848, "confidence": [2020.5724043715848, 2020.5724043715848]}, "tsne_y": {"value": -7.495761297045874}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.3486513913936298}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -0.1561080326928245}, "tsne_x": {"value": -18.46538023808145}, "mds3": {"value": 7.7616485654315746}, "umap_x": {"value": 12.246119}, "pca2": {"value": -0.1062161943776711}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 7.290148331924804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.322502}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001515", "node_attrs": {"div": 13, "num_date": {"value": 2020.4425109656088, "confidence": [2020.3895124440435, 2020.498961940404]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001516", "node_attrs": {"div": 13, "num_date": {"value": 2020.4629390153889, "confidence": [2020.3887425082096, 2020.5306890678385]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001109", "node_attrs": {"div": 15, "num_date": {"value": 2020.5394070755049, "confidence": [2020.484243105926, 2020.5763142519431]}}, "branch_attrs": {"mutations": {"nuc": ["C66T", "C17850T"]}}, "children": [{"name": "AUS/VIC7095/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.5833333333333, "confidence": [2020.5833333333333, 2020.5833333333333]}, "tsne_y": {"value": -7.352247903771707}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.6259329546837312}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.804966168307873}, "tsne_x": {"value": -18.12064651042632}, "mds3": {"value": 10.103018063141848}, "umap_x": {"value": 11.343926}, "pca2": {"value": -4.965130529476859}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 9.500375002862794}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.842933}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C24351T", "T25111A"], "S": ["A930V"]}, "labels": {"aa": "S: A930V"}}}, {"name": "AUS/VIC15118/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.610655737705, "confidence": [2020.610655737705, 2020.610655737705]}, "tsne_y": {"value": -7.2976951259104545}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.7714237838700546}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.99161387096204}, "tsne_x": {"value": -18.289436199406094}, "mds3": {"value": 8.143502689803412}, "umap_x": {"value": 11.721797}, "pca2": {"value": -5.689262416847215}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 7.809222708787594}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.017681}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C11109T"]}}}]}, {"name": "NODE_0001117", "node_attrs": {"div": 16, "num_date": {"value": 2020.6323135898137, "confidence": [2020.5309605215893, 2020.6913278514878]}}, "branch_attrs": {"mutations": {"nuc": ["C12116T", "C21516T", "A27024C"]}}, "children": [{"name": "AUS/VIC14653/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.7090163934427, "confidence": [2020.7090163934427, 2020.7090163934427]}, "tsne_y": {"value": -6.963854250322274}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.8917085541480088}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.689386427365875}, "tsne_x": {"value": -18.749371106341098}, "mds3": {"value": 8.929830197516964}, "umap_x": {"value": 11.473551}, "pca2": {"value": -3.7882415689016495}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 9.834704755008849}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.879025}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["G11083T"]}}}, {"name": "AUS/VIC15984/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.7718579234972, "confidence": [2020.7718579234972, 2020.7718579234972]}, "tsne_y": {"value": -6.485568976027532}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -0.632816926123192}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.728059910991671}, "tsne_x": {"value": -18.916131723704623}, "mds3": {"value": 11.616549945500594}, "umap_x": {"value": 10.5266285}, "pca2": {"value": -4.56916576754725}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 15.189705928941732}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.341764}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C313T", "C9491T", "C22747T", "T27483C", "T29173C"]}}}]}]}, {"name": "NODE_0001519", "node_attrs": {"div": 13, "num_date": {"value": 2020.4573272602777, "confidence": [2020.3902804475756, 2020.5001609140115]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC3846/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.5341530054645, "confidence": [2020.5341530054645, 2020.5341530054645]}, "tsne_y": {"value": -7.613850127233269}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.3818460861205994}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.96297158307609}, "tsne_x": {"value": -18.23531865778634}, "mds3": {"value": 8.907817379445863}, "umap_x": {"value": 11.494929}, "pca2": {"value": -5.613027585788704}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 9.483899845206928}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.913487}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["G4904T", "A5353G", "C19217T", "A28624G"]}}}, {"name": "NODE_0001520", "node_attrs": {"div": 13, "num_date": {"value": 2020.4789263324856, "confidence": [2020.3924810969063, 2020.50956284153]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC3096/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.50956284153, "confidence": [2020.50956284153, 2020.50956284153]}, "tsne_y": {"value": -7.376816062303761}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.972958237494193}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": 1.470735147955362}, "tsne_x": {"value": -18.51262617978599}, "mds3": {"value": 7.987379240892368}, "umap_x": {"value": 12.1929455}, "pca2": {"value": -7.569258271352154}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 6.023980889896913}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.308088}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["A2948G"]}}}, {"name": "NODE_0001120", "node_attrs": {"div": 14, "num_date": {"value": 2020.5360908297491, "confidence": [2020.4813453615732, 2020.586994370326]}}, "branch_attrs": {"mutations": {"nuc": ["G15594T"]}}, "children": [{"name": "AUS/VIC16039/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_y": {"value": -7.279213888880359}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.7996876484210197}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.804739306493106}, "tsne_x": {"value": -18.532614386722702}, "mds3": {"value": 8.908661746180506}, "umap_x": {"value": 11.930463}, "pca2": {"value": -4.994444802730981}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 7.118120685199971}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.143306}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["T15102G"]}}}, {"name": "NODE_0001522", "node_attrs": {"div": 14, "num_date": {"value": 2020.5613265145362, "confidence": [2020.4884431035762, 2020.5921047224567]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC16939/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.5969945355191, "confidence": [2020.5969945355191, 2020.5969945355191]}, "tsne_y": {"value": -7.282194562881354}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.567228188948741}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -2.2006171792365143}, "tsne_x": {"value": -18.54769725412281}, "mds3": {"value": 8.819439452333645}, "umap_x": {"value": 12.082302}, "pca2": {"value": -0.073038634998706}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 7.007855414942372}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.209951}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["G20489T"]}}}, {"name": "AUS/VIC14271/2020", "node_attrs": {"div": 18, "num_date": {"value": 2020.6789617486338, "confidence": [2020.6789617486338, 2020.6789617486338]}, "tsne_y": {"value": -6.86375738594576}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.7554813776808234}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.888754413114579}, "tsne_x": {"value": -18.89972244242849}, "mds3": {"value": 9.80957401450344}, "umap_x": {"value": 10.898741}, "pca2": {"value": -5.393254715438896}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 11.743651119485529}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.556029}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C3656T", "C16658T", "C26858T", "C28377T", "G28899-", "A28900-", "A28901-", "T28902-", "G28903-", "G28904-", "C28905-", "T28906-", "G28907-"]}}}]}]}]}]}]}]}, {"name": "NODE_0001523", "node_attrs": {"div": 13, "num_date": {"value": 2020.4314146536753, "confidence": [2020.3936968237292, 2020.4728314689694]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001524", "node_attrs": {"div": 13, "num_date": {"value": 2020.4512655894653, "confidence": [2020.4247307785938, 2020.4745226144548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001525", "node_attrs": {"div": 13, "num_date": {"value": 2020.4708712597849, "confidence": [2020.4332613192216, 2020.5512210901488]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC13524/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.577868852459, "confidence": [2020.577868852459, 2020.577868852459]}, "tsne_y": {"value": -7.339727066885427}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.7767397504946658}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -6.653711752317692}, "tsne_x": {"value": -18.47637773273796}, "mds3": {"value": 8.317268985073857}, "umap_x": {"value": 12.161201}, "pca2": {"value": -9.78474680101202}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 6.030633962294751}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.281146}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["G2272T"]}}}, {"name": "NODE_0001526", "node_attrs": {"div": 13, "num_date": {"value": 2020.5125279785302, "confidence": [2020.4301424671219, 2020.550956222819]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC7710/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5806010928961, "confidence": [2020.5806010928961, 2020.5806010928961]}, "tsne_y": {"value": -7.257646153190441}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.892190232070788}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -2.9810881750425624}, "tsne_x": {"value": -18.64259405754588}, "mds3": {"value": 8.654714621816435}, "umap_x": {"value": 11.958388}, "pca2": {"value": -3.885954744612463}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 8.332171725977144}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.179209}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["A14084G", "C23707T", "T27785C"]}}}, {"name": "AUS/VIC12763/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5751366120219, "confidence": [2020.5751366120219, 2020.5751366120219]}, "tsne_y": {"value": -7.340438854685445}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.4181566908469718}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.803781783490054}, "tsne_x": {"value": -18.476939064830592}, "mds3": {"value": 8.6586990337895}, "umap_x": {"value": 12.0981655}, "pca2": {"value": -4.994032892638163}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.830824589453199}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.322692}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C15324T"]}}}]}]}, {"name": "NODE_0001527", "node_attrs": {"div": 13, "num_date": {"value": 2020.4651025817313, "confidence": [2020.4408748237195, 2020.4800050647113]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001528", "node_attrs": {"div": 13, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4615121718105, 2020.4822404371585]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC2304/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_y": {"value": -7.331435453417539}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.2706993180275066}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -7.132738957351496}, "tsne_x": {"value": -18.424519151767388}, "mds3": {"value": 6.451223392699568}, "umap_x": {"value": 12.440293}, "pca2": {"value": -10.85444548935811}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 4.616257611937004}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.570307}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC3229/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4931693989072, "confidence": [2020.4931693989072, 2020.4931693989072]}, "tsne_y": {"value": -7.349712276947597}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.7186116189672388}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -2.811343744504609}, "tsne_x": {"value": -18.42590339246415}, "mds3": {"value": 7.611238980247036}, "umap_x": {"value": 12.247833}, "pca2": {"value": -1.393190649118411}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.105233013338729}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.349807}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001113", "node_attrs": {"div": 15, "num_date": {"value": 2020.572109279136, "confidence": [2020.5132193327745, 2020.6233079640929]}}, "branch_attrs": {"mutations": {"nuc": ["C9996T", "G22927T"], "S": ["L455F"]}, "labels": {"aa": "S: L455F"}}, "children": [{"name": "AUS/VIC15010/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.6707650273224, "confidence": [2020.6707650273224, 2020.6707650273224]}, "tsne_y": {"value": -7.296967342308601}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.190155484235992}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": 3.337751197475913}, "tsne_x": {"value": -18.227908379223795}, "mds3": {"value": 5.901109961981171}, "umap_x": {"value": 12.378293}, "pca2": {"value": 6.754693670841945}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 6.375941939761411}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.487698}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["T3043C"]}}}, {"name": "NODE_0001114", "node_attrs": {"div": 17, "num_date": {"value": 2020.6571038251366, "confidence": [2020.608275737155, 2020.6571038251366]}}, "branch_attrs": {"mutations": {"nuc": ["C17135T", "A28416T"]}}, "children": [{"name": "AUS/VIC10121/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.6571038251366, "confidence": [2020.6571038251366, 2020.6571038251366]}, "tsne_y": {"value": -7.076032911751188}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.0452995209110727}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.942469510730938}, "tsne_x": {"value": -18.14564485594159}, "mds3": {"value": 10.53857574670968}, "umap_x": {"value": 11.302439}, "pca2": {"value": -5.595352019117307}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 9.450222546612164}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.761639}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC13926/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.6953551912568, "confidence": [2020.6953551912568, 2020.6953551912568]}, "tsne_y": {"value": -6.948191175780735}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.0766304023377132}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -6.194575130737753}, "tsne_x": {"value": -17.94719887491339}, "mds3": {"value": 10.254690665806084}, "umap_x": {"value": 10.834143}, "pca2": {"value": -7.501301156877831}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 12.82467424723404}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.472457}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["T12215C", "A20239T"]}}}]}]}]}]}, {"name": "NODE_0001531", "node_attrs": {"div": 13, "num_date": {"value": 2020.4504365213695, "confidence": [2020.4219010417553, 2020.4795376548418]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001096", "node_attrs": {"div": 14, "num_date": {"value": 2020.49043715847, "confidence": [2020.4657965145052, 2020.49043715847]}}, "branch_attrs": {"mutations": {"nuc": ["C22480T"]}}, "children": [{"name": "AUS/VIC2822/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4959016393443, "confidence": [2020.4959016393443, 2020.4959016393443]}, "tsne_y": {"value": -7.411216792044142}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.6959810435484446}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -7.135979898954404}, "tsne_x": {"value": -18.54212645600685}, "mds3": {"value": 8.274503910045752}, "umap_x": {"value": 12.1668}, "pca2": {"value": -10.850307797226192}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.843087876217292}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.303546}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC2511/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.4931693989072, "confidence": [2020.4931693989072, 2020.4931693989072]}, "tsne_y": {"value": -7.405213938580674}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.082027834579912}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -6.850615967020389}, "tsne_x": {"value": -18.541445231148497}, "mds3": {"value": 7.153416743984527}, "umap_x": {"value": 12.33492}, "pca2": {"value": -10.275081860708578}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.519823628948543}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.4263}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC2381/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.49043715847, "confidence": [2020.49043715847, 2020.49043715847]}, "tsne_y": {"value": -7.415897691230918}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.3778132895267563}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.108258007443241}, "tsne_x": {"value": -18.53103665677613}, "mds3": {"value": 8.098086682006567}, "umap_x": {"value": 12.2359}, "pca2": {"value": -5.575266426134634}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.783508939906055}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.323477}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001533", "node_attrs": {"div": 14, "num_date": {"value": 2020.5391257357396, "confidence": [2020.4511422800338, 2020.561475409836]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC16281/2020", "node_attrs": {"div": 21, "num_date": {"value": 2020.785519125683, "confidence": [2020.785519125683, 2020.785519125683]}, "tsne_y": {"value": -8.066731501054706}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -1.836888427823109}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.428671447083691}, "tsne_x": {"value": -19.10634664158155}, "mds3": {"value": 11.47655538944964}, "umap_x": {"value": 10.522614}, "pca2": {"value": -3.087559684498894}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 15.289092743190272}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.3273735}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2488T", "C5175T", "C16989T", "A21137G", "C26895T", "T27957C", "A29700G"]}}}, {"name": "AUS/VIC6711/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.561475409836, "confidence": [2020.561475409836, 2020.561475409836]}, "tsne_y": {"value": -7.41120824715601}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.0962962426214436}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -0.5252935955181172}, "tsne_x": {"value": -18.53141706359797}, "mds3": {"value": 8.178889601145855}, "umap_x": {"value": 12.264791}, "pca2": {"value": -0.4905916172101493}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.596153424089748}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.335231}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001101", "node_attrs": {"div": 16, "num_date": {"value": 2020.5131176040984, "confidence": [2020.49148775943, 2020.5375863683746]}}, "branch_attrs": {"mutations": {"nuc": ["G3114T", "C27059T"]}}, "children": [{"name": "AUS/VIC10813/2020", "node_attrs": {"div": 19, "num_date": {"value": 2020.577868852459, "confidence": [2020.577868852459, 2020.577868852459]}, "tsne_y": {"value": -7.821481675522105}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.707107830229876}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -4.788121116523426}, "tsne_x": {"value": -19.006670636466893}, "mds3": {"value": 9.409427716907125}, "umap_x": {"value": 10.9062395}, "pca2": {"value": -4.997367215547273}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 12.089678070427794}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.555329}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4296T", "C8480T", "G10753A"]}}}, {"name": "NODE_0001535", "node_attrs": {"div": 16, "num_date": {"value": 2020.528238915167, "confidence": [2020.5026953569425, 2020.5423499947017]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC11723/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.545081967213, "confidence": [2020.545081967213, 2020.545081967213]}, "tsne_y": {"value": -7.64691381942677}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.9745478763461874}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.947562056894292}, "tsne_x": {"value": -18.844562498681764}, "mds3": {"value": 8.383384088823975}, "umap_x": {"value": 11.617482}, "pca2": {"value": -5.625703371359773}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 9.16990516823197}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.92625}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C4784T"]}}}, {"name": "NODE_0001536", "node_attrs": {"div": 16, "num_date": {"value": 2020.5612548778417, "confidence": [2020.5123434813618, 2020.5751366120219]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/GC-251/2020", "node_attrs": {"div": 17, "num_date": {"value": 2020.594262295082, "confidence": [2020.594262295082, 2020.594262295082]}, "tsne_y": {"value": -7.611137424813142}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Australia"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 3.509268972296009}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -6.637116244420565}, "tsne_x": {"value": -18.82527963071096}, "mds3": {"value": 7.8500014794172435}, "umap_x": {"value": 11.669518}, "pca2": {"value": -8.437503161053662}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 8.370378123817693}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.989691}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C40T"]}}}, {"name": "AUS/VIC8826/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.5751366120219, "confidence": [2020.5751366120219, 2020.5751366120219]}, "tsne_y": {"value": -7.558646475371555}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.1818940501949704}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.71287710726465}, "tsne_x": {"value": -18.754076910542057}, "mds3": {"value": 8.83759000693444}, "umap_x": {"value": 11.678}, "pca2": {"value": -4.580458921474292}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 8.208955804027218}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.9753065}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001537", "node_attrs": {"div": 13, "num_date": {"value": 2020.4809959715474, "confidence": [2020.4498961016236, 2020.4822404371585]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC2321/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.4822404371585, "confidence": [2020.4822404371585, 2020.4822404371585]}, "tsne_y": {"value": -7.342445185324737}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.746958324375392}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.729033777035792}, "tsne_x": {"value": -18.42744961888487}, "mds3": {"value": 6.865534680591014}, "umap_x": {"value": 12.376061}, "pca2": {"value": -4.576453487367751}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 4.737789065491099}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.470726}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001538", "node_attrs": {"div": 13, "num_date": {"value": 2020.4929614087696, "confidence": [2020.4648203404315, 2020.5486439098606]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC12663/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5642076502731, "confidence": [2020.5642076502731, 2020.5642076502731]}, "tsne_y": {"value": -7.342220645076674}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.4719728908792628}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.964074088419719}, "tsne_x": {"value": -18.46842595645893}, "mds3": {"value": 8.630392525569539}, "umap_x": {"value": 12.101399}, "pca2": {"value": -5.622137927481754}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.872358813087748}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.349736}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["C683T"]}}}, {"name": "NODE_0001539", "node_attrs": {"div": 13, "num_date": {"value": 2020.5273063376133, "confidence": [2020.4927759259508, 2020.5486600432673]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC7716/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.5915300546449, "confidence": [2020.5915300546449, 2020.5915300546449]}, "tsne_y": {"value": -7.340242345648995}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.0921620688255904}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.613551452047964}, "tsne_x": {"value": -18.470148292012738}, "mds3": {"value": 7.901041487967153}, "umap_x": {"value": 12.195947}, "pca2": {"value": -4.025266758000329}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.995086917934696}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.292509}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["A26162G"]}}}, {"name": "NODE_0001540", "node_attrs": {"div": 13, "num_date": {"value": 2020.549101745098, "confidence": [2020.516319157005, 2020.5532786885246]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC6699/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5532786885246, "confidence": [2020.5532786885246, 2020.5532786885246]}, "tsne_y": {"value": -7.34705586043986}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.856046217948228}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.713126399337415}, "tsne_x": {"value": -18.43140907708742}, "mds3": {"value": 6.776605999490394}, "umap_x": {"value": 12.370734}, "pca2": {"value": -4.4689197405833845}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 4.718201428909199}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.495736}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001541", "node_attrs": {"div": 13, "num_date": {"value": 2020.5541172611036, "confidence": [2020.526760247387, 2020.5823845500427]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC10693/2020", "node_attrs": {"div": 15, "num_date": {"value": 2020.6653005464482, "confidence": [2020.6653005464482, 2020.6653005464482]}, "tsne_y": {"value": -6.9439550377314285}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 4.662575573148216}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -5.254885347827414}, "tsne_x": {"value": -18.44741272585399}, "mds3": {"value": 6.275706601997436}, "umap_x": {"value": 11.678051}, "pca2": {"value": -3.099670062610908}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 8.446872401316181}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 13.977886}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["G12067T", "C25728T", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29773-", "C29774-"]}}}, {"name": "NODE_0001542", "node_attrs": {"div": 13, "num_date": {"value": 2020.572115076351, "confidence": [2020.5485807687674, 2020.5864944594337]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001543", "node_attrs": {"div": 13, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5674958836294, 2020.5887978142077]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "AUS/VIC10463/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.6762295081967, "confidence": [2020.6762295081967, 2020.6762295081967]}, "tsne_y": {"value": -7.332846782645354}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.4778479108280123}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -6.304434138692321}, "tsne_x": {"value": -18.47425902095072}, "mds3": {"value": 7.006751332708544}, "umap_x": {"value": 12.317205}, "pca2": {"value": -8.685914907695484}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.59863111380627}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.41071}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {"nuc": ["G28326T"]}}}, {"name": "AUS/VIC13553/2020", "node_attrs": {"div": 13, "num_date": {"value": 2020.5887978142077, "confidence": [2020.5887978142077, 2020.5887978142077]}, "tsne_y": {"value": -7.343096797847306}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.93852940496939}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -5.003747873982233}, "tsne_x": {"value": -18.426442139684617}, "mds3": {"value": 6.735174507834207}, "umap_x": {"value": 12.412143}, "pca2": {"value": -5.763110450194831}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 4.730604645672172}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.518019}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001125", "node_attrs": {"div": 14, "num_date": {"value": 2020.7062841530055, "confidence": [2020.6721999116469, 2020.7062841530055]}}, "branch_attrs": {"mutations": {"nuc": ["T1297C"]}}, "children": [{"name": "AUS/VIC16197/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.7554644808743, "confidence": [2020.7554644808743, 2020.7554644808743]}, "tsne_y": {"value": -7.336385272769442}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.9836937091802245}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.742165061943215}, "tsne_x": {"value": -18.484333389578783}, "mds3": {"value": 7.396897726123444}, "umap_x": {"value": 12.267584}, "pca2": {"value": -4.205134893360552}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.6969912256509785}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.355161}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC14102/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.714480874317, "confidence": [2020.714480874317, 2020.714480874317]}, "tsne_y": {"value": -7.336095299561967}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.6558616941802442}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.648157561521241}, "tsne_x": {"value": -18.485824099922564}, "mds3": {"value": 7.597235238660895}, "umap_x": {"value": 12.269099}, "pca2": {"value": -4.03658450272246}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.843559495135167}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.372203}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}, {"name": "AUS/VIC13587/2020", "node_attrs": {"div": 14, "num_date": {"value": 2020.7062841530055, "confidence": [2020.7062841530055, 2020.7062841530055]}, "tsne_y": {"value": -7.331097482731909}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "D.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "6"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "D.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.11918252250388}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "10"}, "pca1": {"value": -4.964080579759606}, "tsne_x": {"value": -18.47613821199484}, "mds3": {"value": 7.23809927110961}, "umap_x": {"value": 12.310832}, "pca2": {"value": -5.6221269450998985}, "Nextstrain_clade": {"value": "20F"}, "t-sne_label_for_Nextstrain_clade": {"value": "5"}, "mds2": {"value": 5.709895839208056}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 14.397572}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "10"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001453", "node_attrs": {"div": 7, "num_date": {"value": 2020.1837714610156, "confidence": [2020.1138037463174, 2020.3220789563109]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000974", "node_attrs": {"div": 8, "num_date": {"value": 2020.2386914874292, "confidence": [2020.1895106696716, 2020.3349004208985]}}, "branch_attrs": {"mutations": {"nuc": ["G10265A"]}}, "children": [{"name": "PER/covper039/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.3401639344263, "confidence": [2020.3401639344263, 2020.3401639344263]}, "tsne_y": {"value": -7.441119355457234}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 1.9992582089737003}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.148010923675467}, "tsne_x": {"value": -13.210792269012089}, "mds3": {"value": 4.6989742358628925}, "umap_x": {"value": 12.13438}, "pca2": {"value": 30.470335235763244}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 2.5056596959938178}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.607075}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C2798T", "C13005T", "C28869T", "A29154T", "C29675-"]}}}, {"name": "NODE_0001124", "node_attrs": {"div": 8, "num_date": {"value": 2020.3233489335066, "confidence": [2020.1815055106842, 2020.388959536498]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "PER/un-CDC-4033331-001/2020", "node_attrs": {"div": 16, "num_date": {"value": 2020.7609289617487, "confidence": [2020.7609289617487, 2020.7609289617487]}, "tsne_y": {"value": -10.382934859208351}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Peru"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.8019362827792853}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -3.219576343765345}, "tsne_x": {"value": -10.631430699760145}, "mds3": {"value": 4.406107129510851}, "umap_x": {"value": 11.87168}, "pca2": {"value": -1.8917548407939824}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -4.333628394808096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.240509}, "country": {"value": "Peru"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4893T", "T6435G", "G11083T", "G19800T", "G23401T", "A28522C", "T29029C", "C29635T"], "S": ["Q613H"]}, "labels": {"aa": "S: Q613H"}}}, {"name": "USA/CA-CZB-10108/2020", "node_attrs": {"div": 12, "num_date": {"value": 2020.47131147541, "confidence": [2020.47131147541, 2020.47131147541]}, "tsne_y": {"value": -7.4992812987455295}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 2.4523306266065727}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.540452098579134}, "tsne_x": {"value": -12.920544710418689}, "mds3": {"value": 7.016037872505794}, "umap_x": {"value": 12.11777}, "pca2": {"value": -10.395995027629407}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": -0.393469673053534}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.573698}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["G12798T", "G14430T", "C25708T", "G26113C"]}}}]}]}, {"name": "NODE_0001262", "node_attrs": {"div": 8, "num_date": {"value": 2020.2867125922567, "confidence": [2020.095909813425, 2020.4219798392016]}}, "branch_attrs": {"mutations": {"nuc": ["A23063T"], "S": ["N501Y"]}, "labels": {"aa": "S: N501Y"}}, "children": [{"name": "NODE_0001263", "node_attrs": {"div": 10, "num_date": {"value": 2020.4317199910224, "confidence": [2020.3724629782248, 2020.4535848199455]}}, "branch_attrs": {"mutations": {"nuc": ["C26984T", "T28196C"]}}, "children": [{"name": "AUS/VIC2065/2020", "node_attrs": {"div": 11, "num_date": {"value": 2020.454918032787, "confidence": [2020.454918032787, 2020.454918032787]}, "tsne_y": {"value": -7.8872375316710945}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.4328645446227475}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -5.0359620100318505}, "tsne_x": {"value": -13.082973504992465}, "mds3": {"value": 8.14865012213029}, "umap_x": {"value": 12.258924}, "pca2": {"value": -6.028840650924017}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0853956134111932}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 15.935537}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {"nuc": ["C1707T"]}}}, {"name": "AUS/VIC2147/2020", "node_attrs": {"div": 10, "num_date": {"value": 2020.4658469945355, "confidence": [2020.4658469945355, 2020.4658469945355]}, "tsne_y": {"value": -8.135246960513898}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "15"}, "division": {"value": "Victoria"}, "umap_label_for_Nextstrain_clade": {"value": "6"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 0.6843606087721217}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "9"}, "pca1": {"value": -4.858498277129426}, "tsne_x": {"value": -13.01440125855204}, "mds3": {"value": 6.951651861191815}, "umap_x": {"value": 12.302301}, "pca2": {"value": -5.242548333253732}, "Nextstrain_clade": {"value": "20B"}, "t-sne_label_for_Nextstrain_clade": {"value": "13"}, "mds2": {"value": 0.0025461216111993}, "umap_label_for_Nextclade_pango_collapsed": {"value": "6"}, "umap_y": {"value": 16.08667}, "country": {"value": "Australia"}, "mds_label_for_Nextstrain_clade": {"value": "9"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001264", "node_attrs": {"div": 9, "num_date": {"value": 2020.3382206568522, "confidence": [2020.100463907362, 2020.4666206360712]}}, "branch_attrs": {"mutations": {"nuc": ["T11288-", "C11289-", "T11290-", "G11291-", "G11292-", "T11293-", "T11294-", "T11295-", "T11296-", "T21992-", "A21993-", "T21994-", "C23604A", "A28271-"], "S": ["Y144-", "P681H"]}, "labels": {"aa": "S: Y144-, P681H"}}, "children": [{"name": "NODE_0001265", "node_attrs": {"div": 39, "num_date": {"value": 2021.124644413463, "confidence": [2020.9253752703314, 2021.3025442745575]}}, "branch_attrs": {"mutations": {"nuc": ["C21T", "C10029T", "C10449A", "A18163G", "G21987-", "G22578A", "C22674T", "T22679C", "C22686T", "G22813T", "T22882G", "G22992A", "C22995A", "A23013C", "A23040G", "A23055G", "T23075C", "C23525T", "T23599G", "C23854A", "G23948T", "A24424T", "T24469A", "C25000T", "C25584T", "C26270T", "C26577G", "G26709A", "A27259C", "C27807T", "-28271T", "C28311T", "G28362-", "A28363-", "G28364-", "A28365-", "A28366-", "C28367-", "G28368-", "C28369-", "A28370-"], "S": ["G142X", "G339D", "S371F", "S373P", "S375F", "K417N", "N440K", "S477N", "T478K", "E484A", "Q493R", "Q498R", "Y505H", "H655Y", "N679K", "N764K", "D796Y", "Q954H", "N969K", "*1274X"]}, "labels": {"aa": "S: G142X, G339D, S371F, S373P, S375F, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, Y505H, H655Y, N679K, N764K, D796Y, Q954H, N969K, *1274X"}}, "children": [{"name": "NODE_0001266", "node_attrs": {"div": 64, "num_date": {"value": 2021.9566820588677, "confidence": [2021.8514792812373, 2021.983158413136]}}, "branch_attrs": {"mutations": {"nuc": ["T670G", "C2790T", "G4184A", "C4321T", "C9344T", "C9534T", "C9866T", "C10198T", "G10447A", "C12880T", "C15714T", "C17410T", "C19955T", "A20055G", "C21618T", "T21633-", "A21634-", "C21635-", "C21636-", "C21637-", "C21638-", "C21639-", "T21640-", "G21641-", "-21987A", "-21992T", "-21993A", "-21994T", "T22200G", "A22688G", "G22775A", "A22786C", "C26060T", "C26858T", "G27382C", "A27383T", "T27384C", "A29510C"], "S": ["T19I", "L24X", "P25-", "P26-", "A27X", "X142D", "-144Y", "V213G", "T376A", "D405N", "R408S"]}, "labels": {"aa": "S: T19I, L24X, P25-, P26-, A27X, X142D, -144Y, V213G, T376A, D405N, R408S"}}, "children": [{"name": "KEN/SS8587/2022", "node_attrs": {"div": 65, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 31.359008368071688}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": -11.420307602735653}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": -2.384490825761735}, "tsne_x": {"value": 1.8272989175797567}, "mds3": {"value": 9.696592545211743}, "umap_x": {"value": -7.252135}, "pca2": {"value": 7.350944280593813}, "Nextstrain_clade": {"value": "21L (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 58.05477937517176}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.33899}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["C4002T", "G29734-", "A29735-", "G29736-", "G29737-", "C29738-", "C29739-", "A29740-", "C29741-", "G29742-", "C29743-", "G29744-", "G29745-", "A29746-", "G29747-", "T29748-", "A29749-", "C29750-", "G29751-", "A29752-", "T29753-", "C29754-", "G29755-", "A29756-", "G29757-", "T29758-", "G29759-"]}}}, {"name": "NZL/22MV0065/2022", "node_attrs": {"div": 66, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 31.33479407384951}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "BA.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "B.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": -16.483460054994893}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "pca1": {"value": 4.8615791483299375}, "tsne_x": {"value": 1.8058555100243336}, "mds3": {"value": 8.961146748457601}, "umap_x": {"value": -7.2237577}, "pca2": {"value": 29.38266388848279}, "Nextstrain_clade": {"value": "21L (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 63.32961832383346}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.042995}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "-1"}}, "branch_attrs": {"mutations": {"nuc": ["A28881T", "C28883G"]}}}]}, {"name": "NODE_0001267", "node_attrs": {"div": 52, "num_date": {"value": 2021.5362005732302, "confidence": [2021.4693101310388, 2021.569535080043]}}, "branch_attrs": {"mutations": {"nuc": ["T5386G", "G6513-", "T6514-", "T6515-", "G8393A", "G11287-", "-11294T", "-11295T", "-11296T", "A11537G", "T13195C", "C15240T", "C21762T", "T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "C21846T", "T21988-", "G21989-", "T21990-", "T21991-", "T21995-", "A22194-", "T22195-", "T22196-", "T22673C", "G22898A", "G23048A", "C23202A", "C24130A", "C24503T"], "S": ["A67V", "I68X", "H69-", "V70X", "T95I", "V143-", "Y145X", "N211X", "L212X", "F371L", "G446S", "G496S", "T547K", "N856K", "L981F"]}, "labels": {"aa": "S: A67V, I68X, H69-, V70X, T95I, V143-, Y145X, N211X, L212X, F371L, G446S, G496S, T547K, N856K, L981F"}}, "children": [{"name": "OX310084", "node_attrs": {"div": 53, "num_date": {"value": 2021.9931506849316, "confidence": [2021.9931506849316, 2021.9931506849316]}, "tsne_y": {"value": 32.20157261969628}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Iceland"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.116045031437327}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.8265366957703656}, "tsne_x": {"value": 2.586286359448237}, "mds3": {"value": 15.207894520088026}, "umap_x": {"value": -7.1839275}, "pca2": {"value": -2.382868853626416}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 45.28659104600801}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.887484}, "country": {"value": "Iceland"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C8290T", "-11292G", "-11293T", "-28362G"]}}}, {"name": "NODE_0001268", "node_attrs": {"div": 54, "num_date": {"value": 2021.5706836180746, "confidence": [2021.537469370734, 2021.5832078949804]}}, "branch_attrs": {"mutations": {"nuc": ["A2832G", "T11285-", "T11286-", "A26530G"]}}, "children": [{"name": "NODE_0001319", "node_attrs": {"div": 55, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5711666421405, 2021.5931506849315]}}, "branch_attrs": {"mutations": {"nuc": ["G22599A"], "S": ["R346K"]}, "labels": {"aa": "S: R346K"}}, "children": [{"name": "KAZ/85_10/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_y": {"value": 32.492963920516246}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kazakhstan"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.056509695250444}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.6882951616035672}, "tsne_x": {"value": 3.1605732195407}, "mds3": {"value": 15.588767634944285}, "umap_x": {"value": -7.277473}, "pca2": {"value": 28.880974784359296}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 48.28252097027053}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.846617}, "country": {"value": "Kazakhstan"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001553", "node_attrs": {"div": 55, "num_date": {"value": 2021.6367052999367, "confidence": [2021.4985458447998, 2021.8662977896195]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001554", "node_attrs": {"div": 55, "num_date": {"value": 2021.7869162684024, "confidence": [2021.5519920897093, 2021.9274836340467]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001320", "node_attrs": {"div": 56, "num_date": {"value": 2021.9077341852117, "confidence": [2021.759805809006, 2021.9495841999556]}}, "branch_attrs": {"mutations": {"nuc": ["A16064G"]}}, "children": [{"name": "KEN/SS6219/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_y": {"value": 32.362762364088645}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.2172562550677}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.4361398551699414}, "tsne_x": {"value": 2.9171366774669907}, "mds3": {"value": 14.849815059213023}, "umap_x": {"value": -7.2629533}, "pca2": {"value": 5.692059058432477}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 47.67172654560233}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.896172}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C19164T"]}}}, {"name": "KEN/SS11351/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_y": {"value": 32.8646075137538}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.35025129118521}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.924953338170875}, "tsne_x": {"value": 3.627104057418488}, "mds3": {"value": 17.928142181429745}, "umap_x": {"value": -7.132188}, "pca2": {"value": -5.482356530341225}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 57.39057913996636}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.940823}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C13862T"]}}}]}, {"name": "NODE_0001322", "node_attrs": {"div": 56, "num_date": {"value": 2021.916393439295, "confidence": [2021.8913380829472, 2021.9575342465753]}}, "branch_attrs": {"mutations": {"nuc": ["G16744A"]}}, "children": [{"name": "KEN/SS8010/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.4305429479277}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.58484324343774}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.775499303878848}, "tsne_x": {"value": 3.031790733024756}, "mds3": {"value": 17.903330989126445}, "umap_x": {"value": -7.197574}, "pca2": {"value": 2.27398403697382}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 54.90113519250385}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.232302}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "KEN/SS7435/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.82830882757111}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.23829178913704}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.7230412052345057}, "tsne_x": {"value": 3.700295132547402}, "mds3": {"value": 19.25229355774498}, "umap_x": {"value": -7.067831}, "pca2": {"value": 4.923699314649023}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 57.98133034820822}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.76309}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G6653A", "G27204C"]}}}, {"name": "KEN/SS4944/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9630136986302, "confidence": [2021.9630136986302, 2021.9630136986302]}, "tsne_y": {"value": 32.33391374296643}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.048850214314175}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.568384739330016}, "tsne_x": {"value": 2.931816218755505}, "mds3": {"value": 16.36656156924711}, "umap_x": {"value": -7.3624825}, "pca2": {"value": 6.545107298924314}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.46095134720812}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.840551}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "KEN/SS11364/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9575342465753, "confidence": [2021.9575342465753, 2021.9575342465753]}, "tsne_y": {"value": 32.3339535254819}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.351034237540286}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.6596881446407385}, "tsne_x": {"value": 3.0365924538546083}, "mds3": {"value": 18.1749213376156}, "umap_x": {"value": -7.066432}, "pca2": {"value": -4.790886751655046}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.18868642021318}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.996101}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A23922G"], "S": ["Q787R"]}, "labels": {"aa": "S: Q787R"}}}, {"name": "NODE_0001557", "node_attrs": {"div": 56, "num_date": {"value": 2021.9399696517219, "confidence": [2021.8932965271053, 2021.9657534246576]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS10695/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9657534246576, "confidence": [2021.9657534246576, 2021.9657534246576]}, "tsne_y": {"value": 32.315519647944974}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.717167424757324}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.774648709133256}, "tsne_x": {"value": 3.100796015559716}, "mds3": {"value": 18.32830592726728}, "umap_x": {"value": -7.1241617}, "pca2": {"value": 2.2747227882873635}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.11157543910904}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.105392}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C3140T"]}}}, {"name": "KEN/SS5266/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.363959058167985}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.919012677583686}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.3748604812217018}, "tsne_x": {"value": 2.964641370496505}, "mds3": {"value": 15.642983410459411}, "umap_x": {"value": -7.368771}, "pca2": {"value": 5.220973892335054}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.34390929208764}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.71094}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T15009C"]}}}]}]}]}, {"name": "NODE_0001328", "node_attrs": {"div": 56, "num_date": {"value": 2021.704474743313, "confidence": [2021.5585426291411, 2021.8774454854959]}}, "branch_attrs": {"mutations": {"nuc": ["C2470T"]}}, "children": [{"name": "NODE_0001331", "node_attrs": {"div": 57, "num_date": {"value": 2021.7875698052103, "confidence": [2021.6734812733312, 2021.9849315068493]}}, "branch_attrs": {"mutations": {"nuc": ["C7926T"]}}, "children": [{"name": "USA/OH-CDC-ASC210571936/2021", "node_attrs": {"div": 62, "num_date": {"value": 2021.9849315068493, "confidence": [2021.9849315068493, 2021.9849315068493]}, "tsne_y": {"value": 32.35818920693473}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1.18"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Ohio"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.22090973793911}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.673563877412122}, "tsne_x": {"value": 3.7830264253671952}, "mds3": {"value": 21.443888120767028}, "umap_x": {"value": -7.1391373}, "pca2": {"value": -7.182214202179355}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 55.93000686455512}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.060875}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G12038A", "G18040T", "A22992G", "A22995C", "C23013A"], "S": ["N477S", "K478T", "A484E"]}, "labels": {"aa": "S: N477S, K478T, A484E"}}}, {"name": "NODE_0001560", "node_attrs": {"div": 57, "num_date": {"value": 2021.908083888291, "confidence": [2021.6901340181523, 2021.9862918232868]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "TWN/CGMH-CGU-130/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.71301556390883}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1.18"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Taiwan"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.12581349488041}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.26403554550013}, "tsne_x": {"value": 3.649202231766693}, "mds3": {"value": 17.646575630818084}, "umap_x": {"value": -7.0898433}, "pca2": {"value": -16.045365647569582}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 58.79834910643518}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.769884}, "country": {"value": "Taiwan"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/CO-CDPHE-2102653837/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.51846422515223}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1.18"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 18.30005950907092}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 4.282114795013508}, "tsne_x": {"value": 3.7192636723485286}, "mds3": {"value": 18.736250064134698}, "umap_x": {"value": -7.125214}, "pca2": {"value": 22.249130918874904}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 54.82104869205767}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.024294}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C2040T", "G13374T"]}}}]}]}, {"name": "NODE_0001561", "node_attrs": {"div": 56, "num_date": {"value": 2021.7291434361596, "confidence": [2021.5632475250306, 2021.8871481252015]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001342", "node_attrs": {"div": 57, "num_date": {"value": 2021.7896271903787, "confidence": [2021.6229096217683, 2021.9818763964252]}}, "branch_attrs": {"mutations": {"nuc": ["T27384C"]}}, "children": [{"name": "USA/MA-UMASSMED-202146011/2022", "node_attrs": {"div": 64, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.13443886485902}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.997620086423352}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.161096852934}, "tsne_x": {"value": 3.557015649645684}, "mds3": {"value": 15.645823435800713}, "umap_x": {"value": -7.086979}, "pca2": {"value": -3.933968667129596}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 61.83823257657784}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.777792}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T21C", "A22T", "G210T", "A14940G", "G27382C", "A27383T", "T29832A"]}}}, {"name": "OV663906", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.13559373472523}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Bavaria"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.839100605177313}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.7703439858921264}, "tsne_x": {"value": 3.133940955335232}, "mds3": {"value": 14.751740733254175}, "umap_x": {"value": -7.346441}, "pca2": {"value": -1.9093706409895024}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.30833336250304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.740213}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A2657G", "T22813G"], "S": ["N417K"]}, "labels": {"aa": "S: N417K"}}}]}, {"name": "NODE_0001563", "node_attrs": {"div": 56, "num_date": {"value": 2021.7537748042032, "confidence": [2021.546976946145, 2021.8893786528513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0067/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9986301369863, "confidence": [2021.9986301369863, 2021.9986301369863]}, "tsne_y": {"value": 32.3348909219781}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1.9"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.05822357828497}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.33044441688563}, "tsne_x": {"value": 3.4187729448030826}, "mds3": {"value": 20.494912047087222}, "umap_x": {"value": -7.300228}, "pca2": {"value": 24.62603493148585}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.713808755134096}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.520927}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C13421T"]}}}, {"name": "NODE_0001564", "node_attrs": {"div": 56, "num_date": {"value": 2021.7645102932968, "confidence": [2021.5498095796295, 2021.8955824853758]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001329", "node_attrs": {"div": 59, "num_date": {"value": 2021.9568707710173, "confidence": [2021.8508492467947, 2021.99701005569]}}, "branch_attrs": {"mutations": {"nuc": ["C25069T", "C25571T", "T26623A"]}}, "children": [{"name": "BEN/707846/2022", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.17018702084091}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Benin"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.304348117228235}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.364252392125925}, "tsne_x": {"value": 3.4738676953756524}, "mds3": {"value": 17.870935598394908}, "umap_x": {"value": -7.2678294}, "pca2": {"value": 14.465971168711034}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 46.90748593583845}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.849394}, "country": {"value": "Benin"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C1218T"]}}}, {"name": "BEN/707917/2022", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.41588013571731}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Benin"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.440858377165}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.867909288407901}, "tsne_x": {"value": 3.6550718567994926}, "mds3": {"value": 16.699626613278497}, "umap_x": {"value": -7.3283634}, "pca2": {"value": 13.937126815208622}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.8950504114019}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.632792}, "country": {"value": "Benin"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C4058T"]}}}]}, {"name": "NODE_0001566", "node_attrs": {"div": 56, "num_date": {"value": 2021.788894620732, "confidence": [2021.5488844022743, 2021.9062407230797]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001334", "node_attrs": {"div": 58, "num_date": {"value": 2021.956907517404, "confidence": [2021.8649293908659, 2021.9794520547946]}}, "branch_attrs": {"mutations": {"nuc": ["C6968G", "C10647T"]}}, "children": [{"name": "HongKong/HKU-220213-276/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9794520547946, "confidence": [2021.9794520547946, 2021.9794520547946]}, "tsne_y": {"value": 32.54698022967616}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.766178173249353}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.4885527720405047}, "tsne_x": {"value": 3.658435579511536}, "mds3": {"value": 18.37710026221749}, "umap_x": {"value": -7.166592}, "pca2": {"value": 1.204518956532961}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 57.52634024810523}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.969143}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "HongKong/HKU-220213-301/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9849315068493, "confidence": [2021.9849315068493, 2021.9849315068493]}, "tsne_y": {"value": 32.63985193677378}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.252975445153904}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.3274605960898775}, "tsne_x": {"value": 3.754684651185063}, "mds3": {"value": 18.489260908314662}, "umap_x": {"value": -7.091706}, "pca2": {"value": 1.5238595526635843}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 59.243973265561365}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.794195}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T27212G"]}}}]}, {"name": "NODE_0001568", "node_attrs": {"div": 56, "num_date": {"value": 2021.805184616927, "confidence": [2021.5510698519756, 2021.9167485642781]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/IL-CDC-ASC210562895/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_y": {"value": 32.621838853419284}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Illinois"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.308440725460857}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.290120535123802}, "tsne_x": {"value": 3.745357801979584}, "mds3": {"value": 18.74897328374441}, "umap_x": {"value": -7.098943}, "pca2": {"value": -5.535839902932312}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 58.62978621814351}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.861843}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C4810A", "G9049A", "A14107G"]}}}, {"name": "NODE_0001569", "node_attrs": {"div": 56, "num_date": {"value": 2021.8289966529896, "confidence": [2021.552618093046, 2021.9220275376483]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001570", "node_attrs": {"div": 56, "num_date": {"value": 2021.9078166505012, "confidence": [2021.6353549073533, 2021.941586648462]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22CH0031/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.161931052910965}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 16.842358216172762}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 23.50178095850392}, "tsne_x": {"value": 3.1799243071175862}, "mds3": {"value": 20.45114464648329}, "umap_x": {"value": -7.301844}, "pca2": {"value": 26.46265660298234}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 49.671939714765855}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.64046}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C10560G", "C18377T"]}}}, {"name": "NODE_0001571", "node_attrs": {"div": 56, "num_date": {"value": 2021.9163546728903, "confidence": [2021.651923467628, 2021.9878737468077]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0064/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.68611278500409}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.148124310769823}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.430349849726901}, "tsne_x": {"value": 3.698971011726219}, "mds3": {"value": 20.660642484541288}, "umap_x": {"value": -7.1637135}, "pca2": {"value": 25.237371227562026}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 53.57069139443536}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.110317}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A3219T", "C26326T"]}}}, {"name": "GMB/00119J/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.16936552790882}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Gambia"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 15.204396608249906}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 22.89823311025665}, "tsne_x": {"value": 3.060255655952767}, "mds3": {"value": 18.52355686307423}, "umap_x": {"value": -7.320009}, "pca2": {"value": 32.0861380292029}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 47.97048582910315}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.839373}, "country": {"value": "Gambia"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001572", "node_attrs": {"div": 56, "num_date": {"value": 2021.8326634421055, "confidence": [2021.5542614691706, 2021.9295447124525]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3711/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9794520547946, "confidence": [2021.9794520547946, 2021.9794520547946]}, "tsne_y": {"value": 32.089608340879934}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.222158065380244}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.749199120039233}, "tsne_x": {"value": 3.348016685169923}, "mds3": {"value": 14.454572538139187}, "umap_x": {"value": -7.230317}, "pca2": {"value": 12.651318386036529}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.368294701540606}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.30476}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C5055T", "G27157T", "T28271-", "T28311C", "-28362G", "-28363A", "-28364G", "-28365A", "-28366A", "-28367C", "-28368G", "-28369C", "-28370A"]}}}, {"name": "NODE_0001573", "node_attrs": {"div": 56, "num_date": {"value": 2021.8474719125259, "confidence": [2021.5538813702385, 2021.9314862454823]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/UT-UPHL-220207733404/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.44370420959584}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.154645081120552}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.1586186858711964}, "tsne_x": {"value": 3.665173928471619}, "mds3": {"value": 15.443497402471692}, "umap_x": {"value": -7.1980195}, "pca2": {"value": -3.123810204000618}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 53.04225104593287}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.515316}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T9386C", "C21575T", "A27753G"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}, {"name": "NODE_0001344", "node_attrs": {"div": 57, "num_date": {"value": 2021.9070458482684, "confidence": [2021.7597187782935, 2021.9384634107178]}}, "branch_attrs": {"mutations": {"nuc": ["C21595T"]}}, "children": [{"name": "USA/CA-CDC-FG-221075/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9767123287672, "confidence": [2021.9767123287672, 2021.9767123287672]}, "tsne_y": {"value": 32.25100364357054}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.543842572650394}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.032600477528198}, "tsne_x": {"value": 3.408121119527236}, "mds3": {"value": 18.241476221742616}, "umap_x": {"value": -7.111165}, "pca2": {"value": 1.541219879575093}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 58.41198440781936}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.782412}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C1346T", "-22194G", "-22195T"], "S": ["X211S"]}, "labels": {"aa": "S: X211S"}}}, {"name": "NODE_0001575", "node_attrs": {"div": 57, "num_date": {"value": 2021.9156040640776, "confidence": [2021.770060987237, 2021.965880089717]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "HongKong/HKU-220114-004/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.45502738853118}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.024196010228664}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.4869383863053307}, "tsne_x": {"value": 3.6115200128266594}, "mds3": {"value": 18.27562581544392}, "umap_x": {"value": -7.14064}, "pca2": {"value": 1.2060627408821616}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 57.59907112609915}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.93552}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A19950G"]}}}, {"name": "TWN/CGMH-CGU-125/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9849315068493, "confidence": [2021.9849315068493, 2021.9849315068493]}, "tsne_y": {"value": 32.64511015646634}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Taiwan"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.68074663505156}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -8.268921475876123}, "tsne_x": {"value": 3.757631637239501}, "mds3": {"value": 18.20470973296604}, "umap_x": {"value": -7.054927}, "pca2": {"value": -16.04705578523691}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 60.87352089627955}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.706291}, "country": {"value": "Taiwan"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G5008A", "C12469T"]}}}]}, {"name": "NODE_0001576", "node_attrs": {"div": 57, "num_date": {"value": 2021.9076384772177, "confidence": [2021.7656148077172, 2021.9440391098315]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22CH0002/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9986301369863, "confidence": [2021.9986301369863, 2021.9986301369863]}, "tsne_y": {"value": 32.23385261954976}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.793961720222372}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 6.936716477871177}, "tsne_x": {"value": 3.4280397317528304}, "mds3": {"value": 17.3240985413223}, "umap_x": {"value": -7.125247}, "pca2": {"value": 9.49351711247106}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 58.90993099642881}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.832155}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A8302G"]}}}, {"name": "NODE_0001577", "node_attrs": {"div": 57, "num_date": {"value": 2021.9078353889765, "confidence": [2021.7703909388654, 2021.9529058810158]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/WA-CDC-UW21122064672/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_y": {"value": 32.05017808154873}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 11.305927862509858}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.0288232660313989}, "tsne_x": {"value": 3.281948389183936}, "mds3": {"value": 13.285727433286894}, "umap_x": {"value": -7.1625524}, "pca2": {"value": 36.1047931594035}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 42.80282716815776}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.89232}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G16528T", "G21986-", "-21995T", "A23128T"], "S": ["X142-", "X145Y"]}, "labels": {"aa": "S: X142-, X145Y"}}}, {"name": "NODE_0001578", "node_attrs": {"div": 57, "num_date": {"value": 2021.915768647579, "confidence": [2021.7725860962157, 2021.9554818077218]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001349", "node_attrs": {"div": 58, "num_date": {"value": 2021.956976091793, "confidence": [2021.866926516846, 2021.9795352503422]}}, "branch_attrs": {"mutations": {"nuc": ["G22882T"], "S": ["K440N"]}, "labels": {"aa": "S: K440N"}}, "children": [{"name": "USA/OKPHL0025492/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.06298191048985}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Oklahoma"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 7.987985860568965}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.536592906816121}, "tsne_x": {"value": 3.3074082360977526}, "mds3": {"value": 10.421194782474728}, "umap_x": {"value": -7.1152754}, "pca2": {"value": 1.904199348808264}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 41.37969943028338}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.9136}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C21789G", "T22197-", "A22198-"], "S": ["T76S", "X212-"]}, "labels": {"aa": "S: T76S, X212-"}}}, {"name": "USA/B018090/2022", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.565468703357865}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Arkansas"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.30087799016684}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.718024693275198}, "tsne_x": {"value": 3.760463958600244}, "mds3": {"value": 17.733996043574923}, "umap_x": {"value": -7.1016545}, "pca2": {"value": -10.178657518190809}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 59.028823943786136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.819172}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G22139C", "T25975C"], "S": ["V193L"]}, "labels": {"aa": "S: V193L"}}}]}, {"name": "NODE_0001580", "node_attrs": {"div": 57, "num_date": {"value": 2021.931707497776, "confidence": [2021.7762492086479, 2021.9716170470351]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "VNM/HCMC_16137/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.38551240493531}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.292576816676888}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.816330071295017}, "tsne_x": {"value": 3.570881038750267}, "mds3": {"value": 18.29572013899361}, "umap_x": {"value": -7.1708946}, "pca2": {"value": 15.700868343433037}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.22213595636725}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.10649}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C217T"]}}}, {"name": "NODE_0001581", "node_attrs": {"div": 57, "num_date": {"value": 2021.9410023755652, "confidence": [2021.7803416921986, 2021.9767123287672]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/12/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9767123287672, "confidence": [2021.9767123287672, 2021.9767123287672]}, "tsne_y": {"value": 32.05538670861105}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.046109637765156}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.791932911269345}, "tsne_x": {"value": 3.1870430404410888}, "mds3": {"value": 16.479695142043035}, "umap_x": {"value": -7.1062336}, "pca2": {"value": 8.921846773657105}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 59.98737640529958}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.824749}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G2441A", "-6513A", "-6514T", "-6515A", "-11285T", "-11286T", "-11287G", "-11288T", "-11289C", "-11290T", "-11291G", "-11292G", "-11293T", "-21765T", "-21766A", "-21767C", "-21768A", "-21769T", "-21770G", "-21987A", "-21988T", "-21989G", "-21990T", "-21991T", "-21992T", "-21993A", "-21994T", "-21995T", "-22194A", "-22195T", "-22196T", "-28362G", "-28363A", "-28364G", "-28365A", "-28366A", "-28367C", "-28368G", "-28369C", "-28370A"], "S": ["X68I", "-69H", "X70V", "X142D", "-143V", "-144Y", "X145Y", "X211N", "X212L", "X1274*"]}, "labels": {"aa": "S: X68I, -69H, X70V, X142D, -143V, -144Y, X145Y, X211N, X212L, X1274*"}}}, {"name": "NODE_0001582", "node_attrs": {"div": 57, "num_date": {"value": 2021.9569832891248, "confidence": [2021.7804974121289, 2021.9869623255647]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CO-CDPHE-2102573834/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.50634912457099}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.39029652349633}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.313271514350529}, "tsne_x": {"value": 3.5328478818243725}, "mds3": {"value": 16.003369558558727}, "umap_x": {"value": -7.2605863}, "pca2": {"value": 4.25174750004561}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 53.18501275686257}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.516762}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001354", "node_attrs": {"div": 59, "num_date": {"value": 2021.9929250496998, "confidence": [2021.9672516388632, 2021.9931506849316]}}, "branch_attrs": {"mutations": {"nuc": ["A28882G", "C28883G"]}}, "children": [{"name": "NZL/21MV3803/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9931506849316, "confidence": [2021.9931506849316, 2021.9931506849316]}, "tsne_y": {"value": 32.00479157673158}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 10.986764032970024}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.010352678957837}, "tsne_x": {"value": 3.2524961677429927}, "mds3": {"value": 14.720258042124058}, "umap_x": {"value": -7.2848415}, "pca2": {"value": 22.017813048848247}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 53.24879068645886}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.673246}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/22MV0038/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.23996706309071}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.412527225233704}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.331182090079716}, "tsne_x": {"value": 3.54316103514896}, "mds3": {"value": 13.031499667803496}, "umap_x": {"value": -7.1591463}, "pca2": {"value": 12.22662059641349}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.80059628783064}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.188759}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001584", "node_attrs": {"div": 54, "num_date": {"value": 2021.600985843072, "confidence": [2021.4528945508184, 2021.832497763248]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001273", "node_attrs": {"div": 55, "num_date": {"value": 2021.7515403582129, "confidence": [2021.5474268351572, 2021.8783861400927]}}, "branch_attrs": {"mutations": {"nuc": ["C11950T"]}}, "children": [{"name": "USA/AZ-CDC-QDX32397230/2021", "node_attrs": {"div": 62, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_y": {"value": 33.270513914856565}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Arizona"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.483737118575938}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.489447241878538}, "tsne_x": {"value": 3.65349540752392}, "mds3": {"value": 20.26338360546556}, "umap_x": {"value": -7.0794992}, "pca2": {"value": 1.2049256508832031}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 61.811609631104425}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.750746}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G1730A", "T2011C", "A4870G", "T12947C", "G16795A", "C28472T", "G28925A"]}}}, {"name": "NZL/22MV0063/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.15207166988841}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.20"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.649683284382963}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.435256837540166}, "tsne_x": {"value": 3.535405382390052}, "mds3": {"value": 20.741208159603627}, "umap_x": {"value": -7.236101}, "pca2": {"value": 25.248960583926745}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.86171685273778}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.280193}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A13692C", "T18732G", "A27379-", "T27380-", "T27381-", "G27382-"]}}}]}, {"name": "NODE_0001586", "node_attrs": {"div": 54, "num_date": {"value": 2021.6590073456352, "confidence": [2021.4476639102372, 2021.8285715022216]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001296", "node_attrs": {"div": 58, "num_date": {"value": 2021.8286589596398, "confidence": [2021.7394080077224, 2021.9382395685661]}}, "branch_attrs": {"mutations": {"nuc": ["T10135C", "C25708T", "A29301G", "C29870A"]}}, "children": [{"name": "USA/B018078/2022", "node_attrs": {"div": 62, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.36929607516292}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Arkansas"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.760399295400834}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.849953968982535}, "tsne_x": {"value": 3.1996009350774344}, "mds3": {"value": 17.568596871387452}, "umap_x": {"value": -7.0622015}, "pca2": {"value": -15.401683312399497}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 60.56538767882247}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.75574}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A5836G", "C14262T", "G22882T", "C28657T"], "S": ["K440N"]}, "labels": {"aa": "S: K440N"}}}, {"name": "NODE_0001588", "node_attrs": {"div": 58, "num_date": {"value": 2021.852836644914, "confidence": [2021.7644637213666, 2021.9479797228664]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001589", "node_attrs": {"div": 58, "num_date": {"value": 2021.9163176565387, "confidence": [2021.7689458577688, 2021.9470270388808]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-MDH-20158/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.72063352388763}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.826311920849552}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -1.42524448214301}, "tsne_x": {"value": 2.664651493245666}, "mds3": {"value": 16.12207585242075}, "umap_x": {"value": -7.276495}, "pca2": {"value": 3.53542820457539}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 54.19127524007845}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.503412}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A23674G"]}}}, {"name": "NZL/21MV3513/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_y": {"value": 33.231366276279815}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.15.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.23061868974637}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.395902324317126}, "tsne_x": {"value": 3.244956373582445}, "mds3": {"value": 21.37681135226804}, "umap_x": {"value": -7.2279234}, "pca2": {"value": 25.026430792312595}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.82905433807313}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.26846}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A24803G"], "S": ["I1081V"]}, "labels": {"aa": "S: I1081V"}}}]}, {"name": "NODE_0001299", "node_attrs": {"div": 59, "num_date": {"value": 2021.9150034996792, "confidence": [2021.8607962499734, 2021.9902658841552]}}, "branch_attrs": {"mutations": {"nuc": ["C25886T"]}}, "children": [{"name": "USA/FL-BPHL-20318/2021", "node_attrs": {"div": 60, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_y": {"value": 33.282043504116714}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.366758508599265}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.146072090781224}, "tsne_x": {"value": 3.3423276720375044}, "mds3": {"value": 18.750076532177307}, "umap_x": {"value": -7.0525827}, "pca2": {"value": 8.62042755142525}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 59.5220016460162}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.735023}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C19524T"]}}}, {"name": "NODE_0001591", "node_attrs": {"div": 59, "num_date": {"value": 2021.9565292286707, "confidence": [2021.8666705807505, 2021.9875775893388]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/TX-HHD-2203044892/2022", "node_attrs": {"div": 61, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.63266554838274}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.17951676335232}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.132936756789199}, "tsne_x": {"value": 2.639517525172662}, "mds3": {"value": 17.25521907824765}, "umap_x": {"value": -7.3671064}, "pca2": {"value": 1.6140060973724375}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.49549520078848}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.773653}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T24763C", "C27532T"]}}}, {"name": "USA/CA-MCPHL-MC02992/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.56874171569443}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.15"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.231483908784112}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.0790268625607085}, "tsne_x": {"value": 2.6115882521079823}, "mds3": {"value": 17.468458075261324}, "umap_x": {"value": -7.30829}, "pca2": {"value": 7.619412198590242}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.2610830654747}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.766674}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001592", "node_attrs": {"div": 54, "num_date": {"value": 2021.6995589199817, "confidence": [2021.5675397740904, 2021.8574682135372]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001284", "node_attrs": {"div": 55, "num_date": {"value": 2021.7880657137086, "confidence": [2021.677539382649, 2021.888487143932]}}, "branch_attrs": {"mutations": {"nuc": ["C12786T"]}}, "children": [{"name": "BEN/6/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.8917808219178, "confidence": [2021.8917808219178, 2021.8917808219178]}, "tsne_y": {"value": 32.61197372281695}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Benin"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.304015175989818}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -7.732347608780488}, "tsne_x": {"value": 2.7248295592427265}, "mds3": {"value": 16.931255335041538}, "umap_x": {"value": -7.229015}, "pca2": {"value": -14.544959271883735}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 53.328697430938064}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.569695}, "country": {"value": "Benin"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["-6513G", "-6514T", "-6515T", "G26577C"]}}}, {"name": "NODE_0001594", "node_attrs": {"div": 55, "num_date": {"value": 2021.8290551540608, "confidence": [2021.6776848670402, 2021.8885318201737]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/GO-NVBS11220GENOV828541389671/2021", "node_attrs": {"div": 59, "num_date": {"value": 2021.9520547945206, "confidence": [2021.9520547945206, 2021.9520547945206]}, "tsne_y": {"value": 33.225433204240744}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.14.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.715195363789025}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.23188839364414}, "tsne_x": {"value": 3.513491466966616}, "mds3": {"value": 17.558565611794222}, "umap_x": {"value": -7.0952177}, "pca2": {"value": -2.511790711812407}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 58.866158847528446}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.770206}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C176T", "C8772T", "C11109T", "A26709G"]}}}, {"name": "NODE_0001595", "node_attrs": {"div": 55, "num_date": {"value": 2021.8542146588222, "confidence": [2021.691027262064, 2021.9810655015242]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Brazil/BR-SP-UW22010114394/2022", "node_attrs": {"div": 58, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.16280761228078}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.235647172550804}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.6479756057711406}, "tsne_x": {"value": 3.0728615692012458}, "mds3": {"value": 17.5348386665483}, "umap_x": {"value": -7.159061}, "pca2": {"value": 32.2835307270876}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.98502618647226}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.074675}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C5388T", "C6990T", "G22696A"]}}}, {"name": "NODE_0001596", "node_attrs": {"div": 55, "num_date": {"value": 2021.9158673871998, "confidence": [2021.6523906896734, 2021.9857746877688]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0066/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.14294101783054}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.757455513477456}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.3306528935793525}, "tsne_x": {"value": 3.46210359827822}, "mds3": {"value": 20.2982846053944}, "umap_x": {"value": -7.215739}, "pca2": {"value": 24.62628658607136}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 52.635819018759456}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.22865}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C745T", "G4486T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AG23/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.9931506849316, "confidence": [2021.9931506849316, 2021.9931506849316]}, "tsne_y": {"value": 32.658678212606134}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.14"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.579127937624335}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.239550043021276}, "tsne_x": {"value": 2.8652005119809827}, "mds3": {"value": 15.418486680940193}, "umap_x": {"value": -7.377847}, "pca2": {"value": 3.8113975704302967}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.23683295090126}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.719776}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001597", "node_attrs": {"div": 54, "num_date": {"value": 2021.7407904585928, "confidence": [2021.5412090389975, 2021.8615893722476]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-N111/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.9191780821918, "confidence": [2021.9191780821918, 2021.9191780821918]}, "tsne_y": {"value": 32.99431362377333}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.18"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.854874351979152}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.020120697558555}, "tsne_x": {"value": 3.085109980714485}, "mds3": {"value": 13.904690833731708}, "umap_x": {"value": -7.3248825}, "pca2": {"value": 4.427343625658367}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.38850240781965}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.638659}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C5730T"]}}}, {"name": "NODE_0001598", "node_attrs": {"div": 54, "num_date": {"value": 2021.7505736381408, "confidence": [2021.546210991739, 2021.8659006844139]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001599", "node_attrs": {"div": 54, "num_date": {"value": 2021.7898368121002, "confidence": [2021.6937601213835, 2021.8804118888872]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-N011/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.8972602739725, "confidence": [2021.8972602739725, 2021.8972602739725]}, "tsne_y": {"value": 32.393365546198844}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.080395681735505}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 5.391020189706836}, "tsne_x": {"value": 2.776671814301151}, "mds3": {"value": 12.644682195301709}, "umap_x": {"value": -7.1301427}, "pca2": {"value": 4.94845208339234}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 39.99344917069504}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.904602}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C3045T"]}}}, {"name": "NODE_0001600", "node_attrs": {"div": 54, "num_date": {"value": 2021.8093357605346, "confidence": [2021.653976629432, 2021.9159242629935]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001601", "node_attrs": {"div": 54, "num_date": {"value": 2021.839315611557, "confidence": [2021.6548256188448, 2021.9256162733548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001289", "node_attrs": {"div": 55, "num_date": {"value": 2021.932386533629, "confidence": [2021.8584208023324, 2021.9356164383562]}}, "branch_attrs": {"mutations": {"nuc": ["-28362G", "-28363A", "-28364G", "-28365A", "-28366A", "-28367C", "-28368G", "-28369C", "-28370A", "C29632T"]}}, "children": [{"name": "NZL/21MV3556/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.9356164383562, "confidence": [2021.9356164383562, 2021.9356164383562]}, "tsne_y": {"value": 32.47182579494539}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.189399405347704}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.6997307580323886}, "tsne_x": {"value": 2.81221662107058}, "mds3": {"value": 18.020605385493024}, "umap_x": {"value": -7.3080063}, "pca2": {"value": 20.665476437361047}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.74405091513027}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.667067}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/22MV0068/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.09580171677956}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.16"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.26607687964456}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.431726990640192}, "tsne_x": {"value": 3.499412891062716}, "mds3": {"value": 20.625608909912568}, "umap_x": {"value": -7.2464128}, "pca2": {"value": 25.23584352833812}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.1926784746634}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.388756}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T3104C", "G25352A"], "S": ["V1264M"]}, "labels": {"aa": "S: V1264M"}}}]}, {"name": "NODE_0001603", "node_attrs": {"div": 54, "num_date": {"value": 2021.9076364214204, "confidence": [2021.6480393430595, 2021.9393887908398]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GS-AU92/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_y": {"value": 32.65607422293222}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.511420238024971}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.1306019123001274}, "tsne_x": {"value": 2.805465263196654}, "mds3": {"value": 15.542946618963866}, "umap_x": {"value": -7.2993517}, "pca2": {"value": 4.55591531582213}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 49.96743956434428}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.802456}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T26479C"]}}}, {"name": "NODE_0001291", "node_attrs": {"div": 55, "num_date": {"value": 2021.9567556106022, "confidence": [2021.8683010315829, 2021.9840001016619]}}, "branch_attrs": {"mutations": {"nuc": ["G5515T"]}}, "children": [{"name": "HongKong/HKU-220213-312/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.990410958904, "confidence": [2021.990410958904, 2021.990410958904]}, "tsne_y": {"value": 33.102087370934626}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.73942185190512}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.487632033113742}, "tsne_x": {"value": 3.372296607465639}, "mds3": {"value": 17.512258216206078}, "umap_x": {"value": -7.185757}, "pca2": {"value": 1.2017979392532718}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.74537831973263}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.921808}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C6633T"]}}}, {"name": "NODE_0001605", "node_attrs": {"div": 55, "num_date": {"value": 2021.984480236386, "confidence": [2021.9363027893319, 2022.0008740779194]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/NY-CDCBI-CRSP_KMITJLHVAI6ZB3QD/2022", "node_attrs": {"div": 55, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.92674612655437}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New York"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.267111103505565}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.0889154591133889}, "tsne_x": {"value": 3.359413970463564}, "mds3": {"value": 15.840531071331974}, "umap_x": {"value": -7.3133187}, "pca2": {"value": -8.08297422981887}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 49.3119632487345}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.847734}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G510-", "T511-", "C512-", "A513-", "T514-", "G515-", "T516-", "T517-", "A518-"]}}}, {"name": "HongKong/HKU-220213-333/2022", "node_attrs": {"div": 55, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.014661120231814}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Hong Kong"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.923841103934613}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.487241506763949}, "tsne_x": {"value": 3.344279545333027}, "mds3": {"value": 17.255161528793504}, "umap_x": {"value": -7.1933928}, "pca2": {"value": 1.2010925859433743}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 55.4102805637576}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.104979}, "country": {"value": "Hong Kong"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001606", "node_attrs": {"div": 54, "num_date": {"value": 2021.833702525133, "confidence": [2021.65804506836, 2021.9272481779108]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3624/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_y": {"value": 33.086413998414294}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.616606821807995}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.46429255685773}, "tsne_x": {"value": 3.418227786696009}, "mds3": {"value": 19.76338391950117}, "umap_x": {"value": -7.2668457}, "pca2": {"value": 25.583048918243893}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.46022069287555}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.416716}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G12014A", "G20208T"]}}}, {"name": "NODE_0001607", "node_attrs": {"div": 54, "num_date": {"value": 2021.8504643991164, "confidence": [2021.6600753068265, 2021.9339499297841]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001608", "node_attrs": {"div": 54, "num_date": {"value": 2021.8751562021996, "confidence": [2021.6652963149136, 2021.9360701010132]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-292689/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9712328767123, "confidence": [2021.9712328767123, 2021.9712328767123]}, "tsne_y": {"value": 32.74812297763616}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Hovedstaden"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.20483466237353}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 1.619078086737566}, "tsne_x": {"value": 2.697921695246286}, "mds3": {"value": 15.927670571728246}, "umap_x": {"value": -7.2636566}, "pca2": {"value": 2.3764177909046893}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 51.977183822090375}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.581928}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G3606T", "A18585C", "A20418G"]}}}, {"name": "NODE_0001609", "node_attrs": {"div": 54, "num_date": {"value": 2021.915147006107, "confidence": [2021.6647946430874, 2021.945288141197]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV3559/2021", "node_attrs": {"div": 54, "num_date": {"value": 2021.9520547945206, "confidence": [2021.9520547945206, 2021.9520547945206]}, "tsne_y": {"value": 32.72347859162269}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.02260338216496}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.4303265646428325}, "tsne_x": {"value": 3.194215553488195}, "mds3": {"value": 18.692386889962084}, "umap_x": {"value": -7.294186}, "pca2": {"value": 25.22940535657822}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.31536940549061}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.567366}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-GP-N329/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9602739726026, "confidence": [2021.9602739726026, 2021.9602739726026]}, "tsne_y": {"value": 32.618193813711535}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.717681383594869}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.174075499125102}, "tsne_x": {"value": 2.7785969011267224}, "mds3": {"value": 15.708109577700082}, "umap_x": {"value": -7.3057065}, "pca2": {"value": 3.652021836313878}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 52.05435058019276}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.735527}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C5777T", "G18985T"]}}}]}]}, {"name": "NODE_0001610", "node_attrs": {"div": 54, "num_date": {"value": 2021.9078361979223, "confidence": [2021.7661655191068, 2021.948382408604]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BRA/ILMD2200469/2022", "node_attrs": {"div": 55, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.01461825937667}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Brazil"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.99567361134174}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.497821320821115}, "tsne_x": {"value": 3.3394299221269623}, "mds3": {"value": 17.15349996198863}, "umap_x": {"value": -7.161891}, "pca2": {"value": -4.245636629032627}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 55.49827787110654}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.08529}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T11422C"]}}}, {"name": "NODE_0001611", "node_attrs": {"div": 54, "num_date": {"value": 2021.9153188174937, "confidence": [2021.7790132353505, 2021.954794520548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CH0985/2021", "node_attrs": {"div": 54, "num_date": {"value": 2021.954794520548, "confidence": [2021.954794520548, 2021.954794520548]}, "tsne_y": {"value": 32.74855899677426}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.533574685955486}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.3341549581577405}, "tsne_x": {"value": 2.9477992967815907}, "mds3": {"value": 16.628076038201282}, "umap_x": {"value": -7.255062}, "pca2": {"value": 12.183076764557502}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 54.0328595847733}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.373146}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["-28370A"]}}}, {"name": "NODE_0001612", "node_attrs": {"div": 54, "num_date": {"value": 2021.939868549079, "confidence": [2021.7786550323017, 2021.992260292137]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0039/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.08737950198756}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.28945005542406}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.62326181829572}, "tsne_x": {"value": 3.4326205508494265}, "mds3": {"value": 15.561360727075002}, "umap_x": {"value": -7.2974157}, "pca2": {"value": 14.573610889228853}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 52.438119566807686}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.59761}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C12781T", "T28271-", "T28311C", "-28362G", "-28363A", "-28364G", "-28365A", "-28366A", "-28367C", "-28368G", "-28369C", "-28370A"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AG51/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.08665064766505}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.11470900643713}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.238610056834029}, "tsne_x": {"value": 3.3626331103087304}, "mds3": {"value": 14.869665666714251}, "umap_x": {"value": -7.256209}, "pca2": {"value": 3.786695421326142}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 54.42323620227106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.24398}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T2067C", "C21727T"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0001613", "node_attrs": {"div": 54, "num_date": {"value": 2021.7866194693695, "confidence": [2021.5477268635832, 2021.8737564609435]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS5338/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.07908136730409}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.651139601839404}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 0.0848394440802992}, "tsne_x": {"value": 3.0394404267015704}, "mds3": {"value": 15.483309850519632}, "umap_x": {"value": -7.2493806}, "pca2": {"value": 5.428941334728971}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 52.17956937860525}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.561474}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C18086T", "G23501T"], "S": ["A647S"]}, "labels": {"aa": "S: A647S"}}}, {"name": "NODE_0001614", "node_attrs": {"div": 54, "num_date": {"value": 2021.7969348011304, "confidence": [2021.5499615811264, 2021.8784487198811]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001276", "node_attrs": {"div": 56, "num_date": {"value": 2021.9149329141067, "confidence": [2021.8802363553925, 2021.982191780822]}}, "branch_attrs": {"mutations": {"nuc": ["G16744A", "G22599A"], "S": ["R346K"]}, "labels": {"aa": "S: R346K"}}, "children": [{"name": "DJI/NAMRU3_A361_2022/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.78617246853655}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Djibouti"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.702743232821204}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.7754865327102736}, "tsne_x": {"value": 3.609138553464169}, "mds3": {"value": 18.285069707101584}, "umap_x": {"value": -7.1108146}, "pca2": {"value": 2.274051421839222}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.31266466335492}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.003906}, "country": {"value": "Djibouti"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C14323T"]}}}, {"name": "KEN/SS11703/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9876712328767, "confidence": [2021.9876712328767, 2021.9876712328767]}, "tsne_y": {"value": 32.84992795944205}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.268084144188062}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.37521239343077}, "tsne_x": {"value": 3.66505181606482}, "mds3": {"value": 18.72463613786085}, "umap_x": {"value": -7.168289}, "pca2": {"value": 0.1472908617720235}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 54.389003065170456}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.180098}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T21762C", "T21846C"], "S": ["V67A", "I95T"]}, "labels": {"aa": "S: V67A, I95T"}}}, {"name": "KEN/SS11426/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.982191780822, "confidence": [2021.982191780822, 2021.982191780822]}, "tsne_y": {"value": 32.81090054893123}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.445112889942902}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.783743488503306}, "tsne_x": {"value": 3.550958243228983}, "mds3": {"value": 17.845482651793937}, "umap_x": {"value": -7.1501975}, "pca2": {"value": -5.012156439776751}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 55.21958678107799}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.194403}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A29683-", "A29684-", "T29685-", "C29686-", "A29687-"]}}}, {"name": "NODE_0001616", "node_attrs": {"div": 56, "num_date": {"value": 2021.9655288690121, "confidence": [2021.8761200164763, 2021.9955821838278]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS8586/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.23346893289725}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.11583764353013}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.722407389533822}, "tsne_x": {"value": 3.0072298998192606}, "mds3": {"value": 19.13135148360836}, "umap_x": {"value": -7.1918592}, "pca2": {"value": 4.930934729615162}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 55.144117820812895}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.229294}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C29675T"]}}}, {"name": "KEN/SS7412/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.231345755593246}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.1"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 13.784429561770532}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.9288023164328845}, "tsne_x": {"value": 2.9463218918626035}, "mds3": {"value": 17.95803703899604}, "umap_x": {"value": -7.2240033}, "pca2": {"value": 6.6926660626319885}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 53.99478854985323}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.428854}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001302", "node_attrs": {"div": 55, "num_date": {"value": 2021.8321734671283, "confidence": [2021.6842351036908, 2021.890490891811]}}, "branch_attrs": {"mutations": {"nuc": ["G5924A"]}}, "children": [{"name": "USA/NJ-CDC-IBX955066498176/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.9712328767123, "confidence": [2021.9712328767123, 2021.9712328767123]}, "tsne_y": {"value": 33.22408208152448}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Jersey"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.986384240023348}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.709774841068774}, "tsne_x": {"value": 3.0295982962972787}, "mds3": {"value": 15.526038092826989}, "umap_x": {"value": -7.1489134}, "pca2": {"value": -4.485443114689344}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 57.10674717202141}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.935072}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C8334T", "C25002T", "T28582C"], "S": ["S1147L"]}, "labels": {"aa": "S: S1147L"}}}, {"name": "SouthAfrica/NHLS-UCT-GP-N031/2021", "node_attrs": {"div": 55, "num_date": {"value": 2021.9109589041095, "confidence": [2021.9109589041095, 2021.9109589041095]}, "tsne_y": {"value": 32.94439056894268}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.896967640894733}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.113327389074314}, "tsne_x": {"value": 2.898119048899772}, "mds3": {"value": 15.462014916264186}, "umap_x": {"value": -7.3616347}, "pca2": {"value": 4.621486883404546}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 52.42024361139399}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.573961}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001618", "node_attrs": {"div": 55, "num_date": {"value": 2021.8551282855556, "confidence": [2021.6874657721658, 2021.9724601357905]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0044/2021", "node_attrs": {"div": 58, "num_date": {"value": 2021.995890410959, "confidence": [2021.995890410959, 2021.995890410959]}, "tsne_y": {"value": 32.8221340097962}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.39224288301717}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -5.428157725321931}, "tsne_x": {"value": 2.649363796247597}, "mds3": {"value": 12.5988937233575}, "umap_x": {"value": -7.248178}, "pca2": {"value": 12.776273694812811}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 55.5142421789062}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.496195}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C26873T", "-28370A", "A28882G", "C28883G"]}}}, {"name": "NODE_0001619", "node_attrs": {"div": 55, "num_date": {"value": 2021.9571563849513, "confidence": [2021.8524962740569, 2021.9953590255973]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/22MV0061/2022", "node_attrs": {"div": 56, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.07124135097364}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.89870381219242}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -0.1560580520908977}, "tsne_x": {"value": 2.979553667066764}, "mds3": {"value": 17.05781929314971}, "umap_x": {"value": -7.3042254}, "pca2": {"value": 26.96793263093924}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.2121497299492}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.590092}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["T19404C"]}}}, {"name": "NZL/22MV0062/2022", "node_attrs": {"div": 55, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.86087137051856}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.22133945085892}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.430448069030279}, "tsne_x": {"value": 2.8879664508796297}, "mds3": {"value": 19.16570657191897}, "umap_x": {"value": -7.2518215}, "pca2": {"value": 25.23405090662634}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 50.27114537139743}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.554405}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001307", "node_attrs": {"div": 56, "num_date": {"value": 2021.854351648852, "confidence": [2021.696516988862, 2021.8945205479451]}}, "branch_attrs": {"mutations": {"nuc": ["C23664T"], "S": ["A701V"]}, "labels": {"aa": "S: A701V"}}, "children": [{"name": "SouthAfrica/NHLS-UCT-GP-N015/2021", "node_attrs": {"div": 57, "num_date": {"value": 2021.9, "confidence": [2021.9, 2021.9]}, "tsne_y": {"value": 32.56973621204759}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.890740843297634}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.603436466965764}, "tsne_x": {"value": 2.697893751946468}, "mds3": {"value": 11.23157705208328}, "umap_x": {"value": -7.1084886}, "pca2": {"value": 3.320088604759441}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 41.55525824030995}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.912577}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C27874T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AF40/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.9, "confidence": [2021.9, 2021.9]}, "tsne_y": {"value": 32.95509760346813}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.236255879515433}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 2.203065548992828}, "tsne_x": {"value": 2.8111810372464667}, "mds3": {"value": 13.853635549164318}, "umap_x": {"value": -7.2244644}, "pca2": {"value": 3.5825971673253583}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 47.55196792089088}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.899353}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "SouthAfrica/NHLS-UCT-LA-Z742/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.8945205479451, "confidence": [2021.8945205479451, 2021.8945205479451]}, "tsne_y": {"value": 32.5548644873547}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.009028464750028}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 7.950209532002627}, "tsne_x": {"value": 2.693777846304049}, "mds3": {"value": 9.96831299057069}, "umap_x": {"value": -7.1251264}, "pca2": {"value": 8.871588830280201}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 38.51969815556238}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.899408}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001621", "node_attrs": {"div": 56, "num_date": {"value": 2021.9074006033545, "confidence": [2021.7006941672005, 2021.9356348672804]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-306755/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.14478814041396}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Syddanmark"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.08894415997978}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.4564688966792776}, "tsne_x": {"value": 2.806856128052868}, "mds3": {"value": 17.68281602046112}, "umap_x": {"value": -7.047308}, "pca2": {"value": 1.1637477066958242}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 60.732595297847766}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.718864}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C1385T", "T3037C", "C21742T", "-22194A", "-22195T", "-22196T"], "S": ["X211N", "X212L"]}, "labels": {"aa": "S: X211N, X212L"}}}, {"name": "NODE_0001622", "node_attrs": {"div": 56, "num_date": {"value": 2021.9569824120476, "confidence": [2021.8626166965637, 2021.968493150685]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MA-CDC-LC0450887/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 32.9757001003759}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Massachusetts"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.991239598398696}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.427323862289781}, "tsne_x": {"value": 2.7888398833514447}, "mds3": {"value": 16.64974953600611}, "umap_x": {"value": -7.1428647}, "pca2": {"value": 23.9808304998689}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 56.09307938431645}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.153996}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C11866T"]}}}, {"name": "SouthAfrica/NHLS-UCT-GS-AT94/2021", "node_attrs": {"div": 56, "num_date": {"value": 2021.968493150685, "confidence": [2021.968493150685, 2021.968493150685]}, "tsne_y": {"value": 33.03291089510352}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Western Cape Province"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.00928667231781}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -2.163177188452906}, "tsne_x": {"value": 2.8736590371126742}, "mds3": {"value": 15.738410207800197}, "umap_x": {"value": -7.3505726}, "pca2": {"value": 4.37187098854522}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 52.38710406752202}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.430538}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001308", "node_attrs": {"div": 57, "num_date": {"value": 2021.9058248370677, "confidence": [2021.7111918990943, 2021.9178229349886]}}, "branch_attrs": {"mutations": {"nuc": ["T23489C"], "S": ["F643L"]}, "labels": {"aa": "S: F643L"}}, "children": [{"name": "NZL/22MV0059/2022", "node_attrs": {"div": 59, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.25937096416093}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.357130390288155}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -3.338506613665418}, "tsne_x": {"value": 2.8954478940515584}, "mds3": {"value": 21.788553664850166}, "umap_x": {"value": -7.1350913}, "pca2": {"value": 24.647838300438423}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 54.583074534159046}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.846622}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-", "C6573T", "A23899G"]}}}, {"name": "NODE_0001309", "node_attrs": {"div": 58, "num_date": {"value": 2021.915693706629, "confidence": [2021.7644451377103, 2021.9370928692479]}}, "branch_attrs": {"mutations": {"nuc": ["C17678T"]}}, "children": [{"name": "BHR/21922149052_S96_L001/2021", "node_attrs": {"div": 62, "num_date": {"value": 2021.9876712328767, "confidence": [2021.9876712328767, 2021.9876712328767]}, "tsne_y": {"value": 32.91072750434917}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Bahrain"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 11.117852701748486}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 3.1267080321815666}, "tsne_x": {"value": 2.4809331263588623}, "mds3": {"value": 12.255056059426316}, "umap_x": {"value": -7.1230125}, "pca2": {"value": -3.158756556906573}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 42.67136295066714}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.88407}, "country": {"value": "Bahrain"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C6285T", "A10449C", "A25897T", "G26530A"]}}}, {"name": "Colombia/CO-CAU-UW21122968642/2021", "node_attrs": {"div": 63, "num_date": {"value": 2021.9931506849316, "confidence": [2021.9931506849316, 2021.9931506849316]}, "tsne_y": {"value": 33.29587379490588}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 12.947556321581436}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -6.463930300886136}, "tsne_x": {"value": 2.740732337285446}, "mds3": {"value": 18.80470668791849}, "umap_x": {"value": -7.0591116}, "pca2": {"value": 32.68235490986892}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 63.10782926944878}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.759237}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["C16215T", "C21530G", "T21534A", "G21535T", "A21536C"]}}}]}, {"name": "NODE_0001624", "node_attrs": {"div": 57, "num_date": {"value": 2021.9145221939077, "confidence": [2021.7138894815087, 2021.964160730458]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "BGD/Laila_693/2022", "node_attrs": {"div": 60, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.19878825085091}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "Bangladesh"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 17.364385692353597}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": 13.396634877149138}, "tsne_x": {"value": 2.790535127856444}, "mds3": {"value": 12.430340676334982}, "umap_x": {"value": -7.1858997}, "pca2": {"value": 20.20649455546971}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 46.03257492796161}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 17.904493}, "country": {"value": "Bangladesh"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["G22882T", "T25000C", "G26577C"], "S": ["K440N"]}, "labels": {"aa": "S: K440N"}}}, {"name": "NZL/22MV0058/2022", "node_attrs": {"div": 57, "num_date": {"value": 2022.0013698630137, "confidence": [2022.0013698630137, 2022.0013698630137]}, "tsne_y": {"value": 33.205096631239535}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "BA.1.17.2"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "2"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango_collapsed": {"value": "BA.1.17.2"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.306891210331614}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "0"}, "pca1": {"value": -4.510026432607876}, "tsne_x": {"value": 2.9789093892595058}, "mds3": {"value": 18.953565404832084}, "umap_x": {"value": -7.0937004}, "pca2": {"value": 17.715627390120183}, "Nextstrain_clade": {"value": "21K (Omicron)"}, "t-sne_label_for_Nextstrain_clade": {"value": "1"}, "mds2": {"value": 57.86476727018415}, "umap_label_for_Nextclade_pango_collapsed": {"value": "0"}, "umap_y": {"value": 16.808664}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "0"}}, "branch_attrs": {"mutations": {"nuc": ["A686-", "A687-", "G688-", "T689-", "C690-", "A691-", "T692-", "T693-", "T694-"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001355", "node_attrs": {"div": 25, "num_date": {"value": 2020.7548871955382, "confidence": [2020.5788571905734, 2020.923436584929]}}, "branch_attrs": {"mutations": {"nuc": ["C913T", "C3267T", "C5388A", "C5986T", "T6954C", "C14676T", "C15279T", "T16176C", "C23271A", "C23709T", "T24506G", "G24914C", "G28280C", "A28281T", "T28282A", "C28977T"], "S": ["A570D", "T716I", "S982A", "D1118H"]}, "labels": {"aa": "S: A570D, T716I, S982A, D1118H"}}, "children": [{"name": "IND/GBRC452/2020", "node_attrs": {"div": 27, "num_date": {"value": 2020.9822404371585, "confidence": [2020.9822404371585, 2020.9822404371585]}, "tsne_y": {"value": 22.744167271801786}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Gujarat"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.45577257230829}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.023894778330495}, "tsne_x": {"value": -17.185872821384052}, "mds3": {"value": 20.49952021641966}, "umap_x": {"value": -2.783391}, "pca2": {"value": -1.1998331383405012}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.323678142296728}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6310818}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T8603C", "A17615G"]}}}, {"name": "NODE_0001356", "node_attrs": {"div": 28, "num_date": {"value": 2020.8207186789393, "confidence": [2020.6652648385912, 2020.947035118075]}}, "branch_attrs": {"mutations": {"nuc": ["T21765-", "A21766-", "C21767-", "A21768-", "T21769-", "G21770-", "C27972T", "G28048T", "A28111G"], "S": ["I68X", "H69-", "V70X", "*1274X"]}, "labels": {"aa": "S: I68X, H69-, V70X, *1274X"}}, "children": [{"name": "NODE_0001395", "node_attrs": {"div": 29, "num_date": {"value": 2020.8832245184815, "confidence": [2020.697169081205, 2021.0432714905894]}}, "branch_attrs": {"mutations": {"nuc": ["C3923T"]}}, "children": [{"name": "NZL/21MV0173/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1931506849314, "confidence": [2021.1931506849314, 2021.1931506849314]}, "tsne_y": {"value": 22.67956276554551}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 20.47035650563868}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 41.64413595256942}, "tsne_x": {"value": -16.261355209378596}, "mds3": {"value": 25.32845996314481}, "umap_x": {"value": -2.8735046}, "pca2": {"value": 0.4960897443745246}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.380338310037445}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.0949862}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C4158T", "C16616T", "C20703T", "C21440T"]}}}, {"name": "Argentina/UW21052160342/2021", "node_attrs": {"div": 47, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_y": {"value": 21.885166581100595}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Argentina"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.26411261710382}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -7.591124845239146}, "tsne_x": {"value": -18.434029742288367}, "mds3": {"value": 34.394693675616885}, "umap_x": {"value": -2.1393332}, "pca2": {"value": 31.22103919195102}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -30.929911712140584}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.6769233}, "country": {"value": "Argentina"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1594A", "C2113T", "C3177T", "C5988T", "C6781T", "T6782C", "C6982T", "C7735T", "C8293T", "A15668T", "C20844T", "G21249T", "C21530G", "T21534A", "G21535T", "A21536C", "C24374T", "G25126A"], "S": ["L938F"]}, "labels": {"aa": "S: L938F"}}}]}, {"name": "NODE_0001391", "node_attrs": {"div": 29, "num_date": {"value": 2020.894151959481, "confidence": [2020.7259986012684, 2021.0237915299963]}}, "branch_attrs": {"mutations": {"nuc": ["C12970T"]}}, "children": [{"name": "GHA/WACCBIP_nCoV_GS148/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0287671232877, "confidence": [2021.0287671232877, 2021.0287671232877]}, "tsne_y": {"value": 22.586357003980662}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Ghana"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.29161988074104}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.479317134917596}, "tsne_x": {"value": -16.261243282166394}, "mds3": {"value": 24.78202584772188}, "umap_x": {"value": -2.8504953}, "pca2": {"value": 0.5135436584427152}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -11.930847251195155}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7178302}, "country": {"value": "Ghana"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["-21994T", "G25660T", "C27046T", "G27750T"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "NODE_0001630", "node_attrs": {"div": 29, "num_date": {"value": 2020.9517554270524, "confidence": [2020.7208915073238, 2021.0653205642832]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "GMB/19882/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1849315068494, "confidence": [2021.1849315068494, 2021.1849315068494]}, "tsne_y": {"value": 22.526228014217168}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Gambia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 18.43843906403081}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 32.59487020264997}, "tsne_x": {"value": -16.297795089028213}, "mds3": {"value": 25.64650034827065}, "umap_x": {"value": -2.8195984}, "pca2": {"value": -1.4976390314057322}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.769311840290815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.9638274}, "country": {"value": "Gambia"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T3100G", "G18021A", "C23996T", "C27737T"], "S": ["P812S"]}, "labels": {"aa": "S: P812S"}}}, {"name": "NODE_0001631", "node_attrs": {"div": 29, "num_date": {"value": 2021.0047113680307, "confidence": [2020.7154066378505, 2021.0671463058961]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DJI/NAMRU3_D487/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_y": {"value": 21.75116267887352}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Djibouti"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 29.469897831843348}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.51392590378393}, "tsne_x": {"value": -18.0255409645662}, "mds3": {"value": 26.64960007427378}, "umap_x": {"value": -2.227185}, "pca2": {"value": 0.5040306472442522}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.741628406332193}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.587933}, "country": {"value": "Djibouti"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "A1168G", "C7600T", "C7764T", "C11200T", "G13201T", "C14120T", "T16456C", "C21707T"], "S": ["H49Y"]}, "labels": {"aa": "S: H49Y"}}}, {"name": "KEN/C97435/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.376712328767, "confidence": [2021.376712328767, 2021.376712328767]}, "tsne_y": {"value": 22.241827618888447}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.461427049547613}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -1.6639391899829736}, "tsne_x": {"value": -16.367432207871044}, "mds3": {"value": 23.4296026723202}, "umap_x": {"value": -2.8395076}, "pca2": {"value": 1.6258617228148742}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.245920112703049}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7577026}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T238G", "C1609T", "A28095C"]}}}]}]}]}, {"name": "NODE_0001632", "node_attrs": {"div": 28, "num_date": {"value": 2020.8452394796225, "confidence": [2020.6612741144663, 2021.0154254875974]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001374", "node_attrs": {"div": 29, "num_date": {"value": 2020.971092399715, "confidence": [2020.725222290597, 2021.1362546230212]}}, "branch_attrs": {"mutations": {"nuc": ["C5025T"]}}, "children": [{"name": "USA/CO-CDPHE-2100921814/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3082191780823, "confidence": [2021.3082191780823, 2021.3082191780823]}, "tsne_y": {"value": 22.51721782302777}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 21.15364107473887}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 53.57939482671972}, "tsne_x": {"value": -16.466296309430035}, "mds3": {"value": 19.72316867207219}, "umap_x": {"value": -2.830512}, "pca2": {"value": 18.70009217314115}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.362587579541769}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6590965}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C21639T", "C25460T", "G26520T"], "S": ["P26L"]}, "labels": {"aa": "S: P26L"}}}, {"name": "NZL/21MV0292/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_y": {"value": 22.824274375229965}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.59699060939668}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.4581155163139714}, "tsne_x": {"value": -18.21127950477494}, "mds3": {"value": 28.49061250917357}, "umap_x": {"value": -2.1962662}, "pca2": {"value": 0.4830136359163917}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -23.846440502244207}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.619817}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C7224T", "C9286T", "C12781T", "A14199G", "A17615G", "C21742T", "G22363T", "C24759A", "G28001A"], "S": ["T1066N"]}, "labels": {"aa": "S: T1066N"}}}]}, {"name": "NODE_0001634", "node_attrs": {"div": 28, "num_date": {"value": 2020.9028439811857, "confidence": [2020.662324766085, 2021.0260273972603]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0091/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0260273972603, "confidence": [2021.0260273972603, 2021.0260273972603]}, "tsne_y": {"value": 22.51973312552211}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.770076233951524}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 3.4701082815532}, "tsne_x": {"value": -16.531230835737837}, "mds3": {"value": 25.16938505578878}, "umap_x": {"value": -2.8225253}, "pca2": {"value": 16.458274511261685}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.821671464740074}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7958248}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C12295T", "A17267G", "G21624T", "G26526T"], "S": ["R21I"]}, "labels": {"aa": "S: R21I"}}}, {"name": "NODE_0001635", "node_attrs": {"div": 28, "num_date": {"value": 2020.9733355951182, "confidence": [2020.6747992652658, 2021.1671182583616]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001636", "node_attrs": {"div": 28, "num_date": {"value": 2021.0087862221965, "confidence": [2020.6772155958004, 2021.1965799053646]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001362", "node_attrs": {"div": 30, "num_date": {"value": 2021.123817051192, "confidence": [2020.9091001621996, 2021.2408733786917]}}, "branch_attrs": {"mutations": {"nuc": ["A3933C", "C11750T"]}}, "children": [{"name": "USA/MI-MDHHS-SC28845/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_y": {"value": 23.47345090545517}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 15.921112539864092}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -0.2410197613630643}, "tsne_x": {"value": -15.366972083470374}, "mds3": {"value": 27.27449637394401}, "umap_x": {"value": -2.8412375}, "pca2": {"value": -2.108993803252788}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.32175311592292}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4175906}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A1631G", "T2201A", "T9151A", "G22381T", "C26058T", "-28271A"], "S": ["R273S"]}, "labels": {"aa": "S: R273S"}}}, {"name": "IMS-10216-CVDP-F19EB163-A52B-4258-AA25-E74FE571FCC3", "node_attrs": {"div": 34, "num_date": {"value": 2021.3575342465754, "confidence": [2021.3575342465754, 2021.3575342465754]}, "tsne_y": {"value": 23.06873637629203}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.253111961105184}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -8.05356001884294}, "tsne_x": {"value": -16.003898529137544}, "mds3": {"value": 26.54918891240117}, "umap_x": {"value": -2.4399316}, "pca2": {"value": -17.27417177095015}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -11.573679312806291}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.8064802}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A4607C", "T17767C", "G21255T", "C25000T"]}}}]}, {"name": "NODE_0001378", "node_attrs": {"div": 29, "num_date": {"value": 2021.1079587513366, "confidence": [2020.8293686135992, 2021.257867689733]}}, "branch_attrs": {"mutations": {"nuc": ["C29686G"]}}, "children": [{"name": "Pakistan/UHS-PAK-S70/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.272602739726, "confidence": [2021.272602739726, 2021.272602739726]}, "tsne_y": {"value": 22.608457869008763}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Pakistan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.719468960398924}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.964444269800031}, "tsne_x": {"value": -16.299219074738975}, "mds3": {"value": 25.20070793416996}, "umap_x": {"value": -2.8289893}, "pca2": {"value": -1.9433975916128867}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.978929492291307}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.981203}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1594T", "A20076G", "C24964T", "G28908A"]}}}, {"name": "Pakistan/UHS2-Pak-196/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4561643835616, "confidence": [2021.4561643835616, 2021.4561643835616]}, "tsne_y": {"value": 22.05059749258335}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Pakistan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 29.501199352370143}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 2.056235848084451}, "tsne_x": {"value": -17.68509631322512}, "mds3": {"value": 23.036672635815}, "umap_x": {"value": -2.5113816}, "pca2": {"value": 12.994874261281948}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -9.19940496159821}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.6331732}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "C9491T", "C10369T", "C13724T", "C26882T", "C28076T", "C29546T"]}}}]}]}, {"name": "NODE_0001639", "node_attrs": {"div": 28, "num_date": {"value": 2021.0065393400753, "confidence": [2020.6773832316023, 2021.1763433042781]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001365", "node_attrs": {"div": 32, "num_date": {"value": 2021.127896468293, "confidence": [2020.9568778520809, 2021.235815999736]}}, "branch_attrs": {"mutations": {"nuc": ["G7272A", "C12933T", "C21843T", "C29272T"], "S": ["S94F"]}, "labels": {"aa": "S: S94F"}}, "children": [{"name": "USA/IN-CDC-ASC210065393/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3794520547945, "confidence": [2021.3794520547945, 2021.3794520547945]}, "tsne_y": {"value": 23.33318615848216}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Indiana"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 17.450947589876677}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 32.09825061379655}, "tsne_x": {"value": -15.48621405564587}, "mds3": {"value": 26.938728257333928}, "umap_x": {"value": -2.7735999}, "pca2": {"value": -8.2968206047748}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.488461109103856}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5809908}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G1181T", "C1218T", "C5310T"]}}}, {"name": "NZL/21MV0326/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.2753424657535, "confidence": [2021.2753424657535, 2021.2753424657535]}, "tsne_y": {"value": 23.736889526136764}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.36070164650072}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5101776493419936}, "tsne_x": {"value": -15.047865632560663}, "mds3": {"value": 27.930777289001675}, "umap_x": {"value": -2.123899}, "pca2": {"value": 0.5043004866137474}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -25.79151492944099}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.7100296}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2306T", "C6145A", "C7528T", "C16726T", "G24821T", "C25413T", "C25728T", "C28657T"], "S": ["A1087S"]}, "labels": {"aa": "S: A1087S"}}}]}, {"name": "NODE_0001641", "node_attrs": {"div": 28, "num_date": {"value": 2021.0510780847842, "confidence": [2020.9230161176922, 2021.1569882133638]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001383", "node_attrs": {"div": 29, "num_date": {"value": 2021.1320727242119, "confidence": [2021.0354176347794, 2021.2670495261177]}}, "branch_attrs": {"mutations": {"nuc": ["G17019T"]}}, "children": [{"name": "JPN/HiroFH71c/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3657534246574, "confidence": [2021.3657534246574, 2021.3657534246574]}, "tsne_y": {"value": 22.498488182026698}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Japan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.22782944672694}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.520137294902724}, "tsne_x": {"value": -16.45557656559966}, "mds3": {"value": 25.03186683613904}, "umap_x": {"value": -2.822627}, "pca2": {"value": 0.5017014305428594}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.674197835459031}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7796843}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T23659C", "C26464T", "G29543C"]}}}, {"name": "NZL/21MV0406/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.327397260274, "confidence": [2021.327397260274, 2021.327397260274]}, "tsne_y": {"value": 22.491378914587145}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.529476126913853}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5202049295276545}, "tsne_x": {"value": -16.50503209221934}, "mds3": {"value": 25.50104794512459}, "umap_x": {"value": -2.8371885}, "pca2": {"value": 0.4989182089644936}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.962896159002876}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2617335}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T240C", "C11195T", "C12741T", "G24926T"], "S": ["V1122L"]}, "labels": {"aa": "S: V1122L"}}}]}, {"name": "NODE_0001643", "node_attrs": {"div": 28, "num_date": {"value": 2021.0529934642022, "confidence": [2020.9337093210113, 2021.1631372007853]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001371", "node_attrs": {"div": 29, "num_date": {"value": 2021.1875146918114, "confidence": [2021.0289994304735, 2021.308535119491]}}, "branch_attrs": {"mutations": {"nuc": ["A25596T"]}}, "children": [{"name": "Pakistan/UHS2-Pak-30/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3931506849315, "confidence": [2021.3931506849315, 2021.3931506849315]}, "tsne_y": {"value": 23.297151725132235}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Pakistan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.37154607902228}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 1.8047483685400112}, "tsne_x": {"value": -15.849405098857488}, "mds3": {"value": 25.20280474839221}, "umap_x": {"value": -2.819927}, "pca2": {"value": -0.5241308433706674}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -8.363746227840533}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.9566445}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C5850T", "C6258T", "G22344T", "G27670T", "G27746T", "C28057T"], "S": ["G261V"]}, "labels": {"aa": "S: G261V"}}}, {"name": "NODE_0001645", "node_attrs": {"div": 29, "num_date": {"value": 2021.2384223212762, "confidence": [2021.0440385175182, 2021.3347366955718]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Pakistan/UHS2-Pak-130/2021", "node_attrs": {"div": 30, "num_date": {"value": 2021.4150684931508, "confidence": [2021.4150684931508, 2021.4150684931508]}, "tsne_y": {"value": 22.48326813737592}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Pakistan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.4396104153344}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.645348003331642}, "tsne_x": {"value": -16.44232866057706}, "mds3": {"value": 23.4549725750632}, "umap_x": {"value": -2.865973}, "pca2": {"value": 4.558576669443654}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.272754210421358}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.605338}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C19164T"]}}}, {"name": "Pakistan/UHS2-Pak-60/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.4232876712329, "confidence": [2021.4232876712329, 2021.4232876712329]}, "tsne_y": {"value": 23.49534114148937}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Pakistan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.26741005499841}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 1.2681777485508068}, "tsne_x": {"value": -16.090224975554666}, "mds3": {"value": 24.07597060128589}, "umap_x": {"value": -2.508153}, "pca2": {"value": 7.490056584830444}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -8.534244358948373}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4642065}, "country": {"value": "Pakistan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "A6866C", "G7865A", "A8590G", "T8935C", "G23285T"], "S": ["A575S"]}, "labels": {"aa": "S: A575S"}}}]}]}, {"name": "NODE_0001646", "node_attrs": {"div": 28, "num_date": {"value": 2021.0675449164048, "confidence": [2020.9358378413374, 2021.1637283681155]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0258/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_y": {"value": 23.482597568929727}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 28.612687835311664}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 38.106160600805865}, "tsne_x": {"value": -15.94892747852428}, "mds3": {"value": 23.973946864119466}, "umap_x": {"value": -2.3755307}, "pca2": {"value": -0.5355729883916001}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -8.743685711611084}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.6227503}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G4255A", "G11507A", "C15963T", "G22205T", "C25433T", "G25445T", "C27434T"], "S": ["D215Y"]}, "labels": {"aa": "S: D215Y"}}}, {"name": "NODE_0001647", "node_attrs": {"div": 28, "num_date": {"value": 2021.089613396953, "confidence": [2020.935737697009, 2021.1622548622986]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10033-CVDP-9E9987D6-38FD-4065-BA3B-EF0916F39E45", "node_attrs": {"div": 34, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_y": {"value": 22.11048410058685}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.58520943709217}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.153495682485239}, "tsne_x": {"value": -17.098353864349022}, "mds3": {"value": 23.6316915498366}, "umap_x": {"value": -2.4328105}, "pca2": {"value": 19.108266987399865}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.976105070594212}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.8771737}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G1157A", "G3638T", "C6255T", "C8733T", "C9532T", "A27579G"]}}}, {"name": "NODE_0001648", "node_attrs": {"div": 28, "num_date": {"value": 2021.104997617141, "confidence": [2020.9362606971547, 2021.1640658423448]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001649", "node_attrs": {"div": 28, "num_date": {"value": 2021.1261433006582, "confidence": [2020.9354195882804, 2021.1666057428015]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/INSACOG-GBRC1401/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2287671232878, "confidence": [2021.2287671232878, 2021.2287671232878]}, "tsne_y": {"value": 21.75739881017215}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.7068127921553}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -8.237962988527585}, "tsne_x": {"value": -16.88564370814367}, "mds3": {"value": 25.193466013723995}, "umap_x": {"value": -2.8245652}, "pca2": {"value": -17.966012056362974}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.209043800321844}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4787893}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C119T", "C228T", "C11455T", "C13620T", "T15096C", "C20628T", "G29868T", "C29870A"]}}}, {"name": "NODE_0001376", "node_attrs": {"div": 29, "num_date": {"value": 2021.28082293315, "confidence": [2021.1122323478717, 2021.3191780821917]}}, "branch_attrs": {"mutations": {"nuc": ["T1292C"]}}, "children": [{"name": "Japan/SZ-NIG-Y21401/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.4205479452055, "confidence": [2021.4205479452055, 2021.4205479452055]}, "tsne_y": {"value": 23.09426425292354}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.70664394236041}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.61700595119872}, "tsne_x": {"value": -16.12917442877543}, "mds3": {"value": 27.79132794597994}, "umap_x": {"value": -2.8631842}, "pca2": {"value": 1.281490953973822}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.886246631274942}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4975963}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "C8895T", "G18225T", "G27461T", "C29085T"]}}}, {"name": "Japan/SZ-NIG-Y21079/2021", "node_attrs": {"div": 29, "num_date": {"value": 2021.3191780821917, "confidence": [2021.3191780821917, 2021.3191780821917]}, "tsne_y": {"value": 22.49226373982985}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.22095611771896}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.441252012657544}, "tsne_x": {"value": -16.47138694663851}, "mds3": {"value": 22.508218529947925}, "umap_x": {"value": -2.8900976}, "pca2": {"value": -7.566204049172526}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.135104278948813}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6223428}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}]}, {"name": "NODE_0001651", "node_attrs": {"div": 28, "num_date": {"value": 2021.133203547333, "confidence": [2020.935424109275, 2021.1855605665442]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU157004", "node_attrs": {"div": 36, "num_date": {"value": 2021.3191780821917, "confidence": [2021.3191780821917, 2021.3191780821917]}, "tsne_y": {"value": 23.85752320542928}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.906533855630244}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.9108805341424135}, "tsne_x": {"value": -15.966096463139396}, "mds3": {"value": 25.15035700598713}, "umap_x": {"value": -2.403656}, "pca2": {"value": -6.113190620373603}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -21.24857771405968}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.235403}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1191T", "T1195C", "T2924G", "C2997T", "C7029T", "C23895T", "C28087T", "C29095T"], "S": ["T778I"]}, "labels": {"aa": "S: T778I"}}}, {"name": "NODE_0001652", "node_attrs": {"div": 28, "num_date": {"value": 2021.185866629243, "confidence": [2021.0436986182392, 2021.2772108158438]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-21736/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.3383561643836, "confidence": [2021.3383561643836, 2021.3383561643836]}, "tsne_y": {"value": 22.604364775586564}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.2273339808138}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.538050109604456}, "tsne_x": {"value": -16.34389769360542}, "mds3": {"value": 25.324148167971188}, "umap_x": {"value": -2.8159506}, "pca2": {"value": -7.855066325005133}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.465624131610909}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7848184}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C5575T", "C11173T", "T17247C", "-21992T", "-21993A", "-21994T", "A24778G"], "S": ["-144Y"]}, "labels": {"aa": "S: -144Y"}}}, {"name": "NODE_0001653", "node_attrs": {"div": 28, "num_date": {"value": 2021.2296177513124, "confidence": [2021.0571784079953, 2021.335616438356]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10004-CVDP-977F2A65-107B-4764-B112-E3DF93C27337", "node_attrs": {"div": 30, "num_date": {"value": 2021.335616438356, "confidence": [2021.335616438356, 2021.335616438356]}, "tsne_y": {"value": 22.457671798786404}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.546699147984995}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.775905121258984}, "tsne_x": {"value": -16.303231201422726}, "mds3": {"value": 23.40940854587714}, "umap_x": {"value": -2.7867153}, "pca2": {"value": -9.763130917062089}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.52808732735026}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.867045}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G9758A", "C14120T"]}}}, {"name": "NODE_0001654", "node_attrs": {"div": 28, "num_date": {"value": 2021.2796846313095, "confidence": [2021.0536748795223, 2021.355754513888]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Japan/SZ-NIG-Y21858/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.5602739726028, "confidence": [2021.5602739726028, 2021.5602739726028]}, "tsne_y": {"value": 22.461502391566093}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Shizuoka"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.30565817419246}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.5245844493633705}, "tsne_x": {"value": -16.551925820324733}, "mds3": {"value": 23.734202181158}, "umap_x": {"value": -2.743242}, "pca2": {"value": -9.868386358215082}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.963403892422438}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.1893418}, "country": {"value": "Japan"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "T9919C", "C10332T", "G29711T"]}}}, {"name": "SouthAfrica/NHLS-UCT-AM-Z059/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.4424657534246, "confidence": [2021.4424657534246, 2021.4424657534246]}, "tsne_y": {"value": 22.572670693884493}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.3324726447394}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.749856790992853}, "tsne_x": {"value": -16.349445884431404}, "mds3": {"value": 27.44246212343311}, "umap_x": {"value": -2.8559868}, "pca2": {"value": 2.116639196725173}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.392163022714158}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.962095}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C6628T", "G8027T", "A8308C", "T8423G", "C27881T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001396", "node_attrs": {"div": 29, "num_date": {"value": 2020.8609010764212, "confidence": [2020.7232303206729, 2020.9582849745454]}}, "branch_attrs": {"mutations": {"nuc": ["A17615G"]}}, "children": [{"name": "NODE_0001409", "node_attrs": {"div": 31, "num_date": {"value": 2020.905039235739, "confidence": [2020.8335318449047, 2020.9685792349726]}}, "branch_attrs": {"mutations": {"nuc": ["T8603C", "G25437T"]}}, "children": [{"name": "NZL/20CV0687/2020", "node_attrs": {"div": 35, "num_date": {"value": 2020.9685792349726, "confidence": [2020.9685792349726, 2020.9685792349726]}, "tsne_y": {"value": 22.742935834315503}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.106862271273712}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.179201431824032}, "tsne_x": {"value": -17.56326731936028}, "mds3": {"value": 27.323959923654204}, "umap_x": {"value": -2.8408794}, "pca2": {"value": 0.4539189633479046}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -11.02000216327305}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.3812313}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C180T", "C1392T", "C16362T", "A29019G"]}}}, {"name": "NODE_0001660", "node_attrs": {"div": 31, "num_date": {"value": 2021.0075491874563, "confidence": [2020.75182872025, 2021.1734425244051]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CUIMC-NP-6360/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2424657534248, "confidence": [2021.2424657534248, 2021.2424657534248]}, "tsne_y": {"value": 22.66359164780781}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New York"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 29.600938436210225}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 0.3740261494379325}, "tsne_x": {"value": -17.93194993117095}, "mds3": {"value": 23.438954128949543}, "umap_x": {"value": -2.384775}, "pca2": {"value": 22.39610902168764}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.304744311327386}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.2472315}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G3242A", "C3253T", "C12439T", "C17304T", "A20297G", "C28677T"]}}}, {"name": "NODE_0001661", "node_attrs": {"div": 31, "num_date": {"value": 2021.1079770141205, "confidence": [2020.7458711432953, 2021.2158701553694]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/RI-CDCBI-RIDOH_10162/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3657534246574, "confidence": [2021.3657534246574, 2021.3657534246574]}, "tsne_y": {"value": 22.788711166894725}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Rhode Island"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.283762689202074}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5174086574567425}, "tsne_x": {"value": -17.38537954746767}, "mds3": {"value": 24.241932881274664}, "umap_x": {"value": -2.8390148}, "pca2": {"value": 0.5124995720410864}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.855853264064343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2374513}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G18213T", "T22501C", "C28253T"]}}}, {"name": "OU135922", "node_attrs": {"div": 35, "num_date": {"value": 2021.2808219178082, "confidence": [2021.2808219178082, 2021.2808219178082]}, "tsne_y": {"value": 22.695717347071373}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Saxony"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.71401467233037}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.19937729946512}, "tsne_x": {"value": -17.58163263604267}, "mds3": {"value": 23.242327828553417}, "umap_x": {"value": -2.4828088}, "pca2": {"value": 19.127331190230933}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.95809358861426}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.0583334}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2847T", "T3488A", "C8139T", "C14322T"]}}}]}]}]}, {"name": "NODE_0001665", "node_attrs": {"div": 29, "num_date": {"value": 2020.8933826060234, "confidence": [2020.6997781636705, 2021.058020987361]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001406", "node_attrs": {"div": 30, "num_date": {"value": 2021.0046393028786, "confidence": [2020.781569188752, 2021.109641894195]}}, "branch_attrs": {"mutations": {"nuc": ["C19854T"]}}, "children": [{"name": "Lebanon/QIB-597/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.204109589041, "confidence": [2021.204109589041, 2021.204109589041]}, "tsne_y": {"value": 23.201698688841965}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.363366904563108}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 0.0863975257929192}, "tsne_x": {"value": -17.034879634978733}, "mds3": {"value": 25.06030191819121}, "umap_x": {"value": -2.5799685}, "pca2": {"value": -0.7541708252444028}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -9.88599196189544}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2759068}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G4444T", "A5538G", "G10664A", "G22331A"], "S": ["G257S"]}, "labels": {"aa": "S: G257S"}}}, {"name": "NODE_0001407", "node_attrs": {"div": 32, "num_date": {"value": 2021.1078385893577, "confidence": [2020.927410552831, 2021.158375899018]}}, "branch_attrs": {"mutations": {"nuc": ["A19079G", "T21579C"], "S": ["V6A"]}, "labels": {"aa": "S: V6A"}}, "children": [{"name": "GAB/15380_Gabon/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.190410958904, "confidence": [2021.190410958904, 2021.190410958904]}, "tsne_y": {"value": 23.7265444701086}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Gabon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.136213602773537}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.026606887343158}, "tsne_x": {"value": -16.800130093097177}, "mds3": {"value": 29.22917581031846}, "umap_x": {"value": -2.7372725}, "pca2": {"value": 12.026320202580033}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.41115915435844}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.78794}, "country": {"value": "Gabon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C12367T", "G17064T", "G25540A", "C28333T"]}}}, {"name": "GAB/5129_Gabon/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3191780821917, "confidence": [2021.3191780821917, 2021.3191780821917]}, "tsne_y": {"value": 23.48591134385696}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Gabon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.38664922835148}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 3.9880962023743423}, "tsne_x": {"value": -16.890262010661353}, "mds3": {"value": 26.54527021601229}, "umap_x": {"value": -2.8299363}, "pca2": {"value": 11.505533957716205}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.0103513988765}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.600997}, "country": {"value": "Gabon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C21575T", "C25731T", "G28739T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}}]}]}, {"name": "NODE_0001399", "node_attrs": {"div": 30, "num_date": {"value": 2020.9701374165295, "confidence": [2020.7174257514414, 2021.1017834250074]}}, "branch_attrs": {"mutations": {"nuc": ["G26730C"]}}, "children": [{"name": "Lebanon/QIB-243/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.113698630137, "confidence": [2021.113698630137, 2021.113698630137]}, "tsne_y": {"value": 23.09020857149258}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.05749919458649}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -1.131746710003532}, "tsne_x": {"value": -17.129866364558705}, "mds3": {"value": 22.983959098052782}, "umap_x": {"value": -2.8395932}, "pca2": {"value": 16.148685113071597}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.119875513365624}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.3817525}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C4876T", "T13914C", "C14184T", "C25000G"], "S": ["D1146E"]}, "labels": {"aa": "S: D1146E"}}}, {"name": "NODE_0001669", "node_attrs": {"div": 30, "num_date": {"value": 2021.0115853267955, "confidence": [2020.7173428473593, 2021.1073818672558]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001403", "node_attrs": {"div": 36, "num_date": {"value": 2021.1857790644488, "confidence": [2021.0369367030312, 2021.2448735305338]}}, "branch_attrs": {"mutations": {"nuc": ["G5023A", "C6568T", "A9529G", "G10396T", "G20962A", "G22094C"], "S": ["D178H"]}, "labels": {"aa": "S: D178H"}}, "children": [{"name": "USA/WA-UW-2021041285054/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_y": {"value": 24.367073935703825}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "Q.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 28.539214922059955}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -7.669924122762148}, "tsne_x": {"value": -16.680722491158967}, "mds3": {"value": 24.849840353982657}, "umap_x": {"value": -2.1543167}, "pca2": {"value": 31.07200514839397}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -22.350703658726392}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.662551}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C450A", "C15024T", "C28253T", "-28271A"]}}}, {"name": "USA/WA-UW-21052529966/2021", "node_attrs": {"div": 43, "num_date": {"value": 2021.3958904109588, "confidence": [2021.3958904109588, 2021.3958904109588]}, "tsne_y": {"value": 24.49469258198434}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "Q.3"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Washington"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 28.48385956732496}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -7.616604144534269}, "tsne_x": {"value": -16.638491886333643}, "mds3": {"value": 30.659929452025445}, "umap_x": {"value": -2.0849075}, "pca2": {"value": 31.21707840892173}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -27.21738000003132}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.752201}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A10323G", "C21530G", "T21534A", "G21535T", "A21536C", "G25252T", "G26158T"]}}}]}, {"name": "NODE_0001671", "node_attrs": {"div": 30, "num_date": {"value": 2021.0530093863927, "confidence": [2020.7175971508882, 2021.1363944369602]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "COL/SEC-0350L/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_y": {"value": 23.26559916878144}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Colombia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 27.464946267973254}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 53.16836893345689}, "tsne_x": {"value": -17.176934505685356}, "mds3": {"value": 24.69727552629564}, "umap_x": {"value": -2.420526}, "pca2": {"value": -2.677109307449401}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.340330870407804}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.984737}, "country": {"value": "Colombia"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C14599T", "G18105T", "C26947T", "C27641T", "C29754T"]}}}, {"name": "NODE_0001400", "node_attrs": {"div": 33, "num_date": {"value": 2021.2309760488308, "confidence": [2021.161346963846, 2021.2589041095891]}}, "branch_attrs": {"mutations": {"nuc": ["T9418C", "C12357T", "C27389T"]}}, "children": [{"name": "USA/NM-UNM-TC241343/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.376712328767, "confidence": [2021.376712328767, 2021.376712328767]}, "tsne_y": {"value": 23.007412568596724}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Mexico"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.25019047910469}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.735491911979986}, "tsne_x": {"value": -16.96299367860739}, "mds3": {"value": 25.539679219244807}, "umap_x": {"value": -2.849451}, "pca2": {"value": 14.195375915371462}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.406929590014885}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7269206}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C29353T"]}}}, {"name": "USA/CO-CDC-FG-022205/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_y": {"value": 23.137324888715128}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Colorado"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.67173021553203}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.116067645745245}, "tsne_x": {"value": -17.055473588601753}, "mds3": {"value": 28.122322896347253}, "umap_x": {"value": -2.8089406}, "pca2": {"value": -5.96307126308331}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.297146933744038}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.407481}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G7328T"]}}}]}]}]}]}]}, {"name": "NODE_0001422", "node_attrs": {"div": 30, "num_date": {"value": 2020.9025237326503, "confidence": [2020.736631623229, 2021.0428118819982]}}, "branch_attrs": {"mutations": {"nuc": ["A12162G"]}}, "children": [{"name": "NODE_0001424", "node_attrs": {"div": 32, "num_date": {"value": 2021.006535186846, "confidence": [2020.806690761584, 2021.0896587557725]}}, "branch_attrs": {"mutations": {"nuc": ["G10870T", "T23042C"], "S": ["S494P"]}, "labels": {"aa": "S: S494P"}}, "children": [{"name": "USA/MS-CDC-ASC210005794/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2013698630137, "confidence": [2021.2013698630137, 2021.2013698630137]}, "tsne_y": {"value": 23.492739825009263}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Mississippi"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 18.560047589765563}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 24.22866504278701}, "tsne_x": {"value": -17.17019695263209}, "mds3": {"value": 27.50445961582544}, "umap_x": {"value": -2.7961557}, "pca2": {"value": -14.988882146808333}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -19.56152142357136}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5326598}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2878T", "A11353G", "G26730T"]}}}, {"name": "NZL/21MV0112/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.141095890411, "confidence": [2021.141095890411, 2021.141095890411]}, "tsne_y": {"value": 24.004485456597788}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 18.904715680615944}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 32.60019559913524}, "tsne_x": {"value": -17.202298867017312}, "mds3": {"value": 29.58838883327229}, "umap_x": {"value": -2.326365}, "pca2": {"value": -1.472466856774266}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -23.47454824354659}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.373186}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "T1452G", "G2764T", "G12176A", "A25136G", "C27549T"], "S": ["N1192D"]}, "labels": {"aa": "S: N1192D"}}}]}, {"name": "NODE_0001675", "node_attrs": {"div": 30, "num_date": {"value": 2020.955349718804, "confidence": [2020.7306781952457, 2021.0373574541047]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001676", "node_attrs": {"div": 30, "num_date": {"value": 2021.0059820836439, "confidence": [2020.6841197824563, 2021.1493150684933]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IMS-10203-CVDP-A7A6030E-75E7-47BF-8572-0E3AC240174A", "node_attrs": {"div": 32, "num_date": {"value": 2021.1493150684933, "confidence": [2021.1493150684933, 2021.1493150684933]}, "tsne_y": {"value": 22.869550975325183}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.65587055251943}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.176798273770154}, "tsne_x": {"value": -16.953507080014326}, "mds3": {"value": 22.82656691156246}, "umap_x": {"value": -2.643485}, "pca2": {"value": 19.22526240495024}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.023951351137692}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2821774}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1716T", "-21765T", "-21769T", "-21770A", "C26192T"], "S": ["-69X", "X70I"]}, "labels": {"aa": "S: -69X, X70I"}}}, {"name": "NODE_0001677", "node_attrs": {"div": 30, "num_date": {"value": 2021.0530376681472, "confidence": [2020.6841346199792, 2021.1607793701855]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0155/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1712328767123, "confidence": [2021.1712328767123, 2021.1712328767123]}, "tsne_y": {"value": 23.015773266121784}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.160950113873906}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.399618357356301}, "tsne_x": {"value": -17.1755289132991}, "mds3": {"value": 26.41638989956457}, "umap_x": {"value": -2.899853}, "pca2": {"value": 0.5011224942600985}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.662642653806856}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.1857717}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G278A", "C11644T", "A12235G", "A27579-", "T27580-", "T27581-"]}}}, {"name": "NODE_0001678", "node_attrs": {"div": 30, "num_date": {"value": 2021.1053900093452, "confidence": [2020.6806937089098, 2021.1648400814051]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0409/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3301369863013, "confidence": [2021.3301369863013, 2021.3301369863013]}, "tsne_y": {"value": 23.223051276168665}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.932454280670846}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5171712524192578}, "tsne_x": {"value": -17.182861602478923}, "mds3": {"value": 25.904990455198543}, "umap_x": {"value": -2.4580472}, "pca2": {"value": 0.5027666649371657}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.567721866960865}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.7647746}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C6267T", "C6997T", "C8880T", "G19962T"]}}}, {"name": "NZL/21MV0368/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3109589041096, "confidence": [2021.3109589041096, 2021.3109589041096]}, "tsne_y": {"value": 23.28679729637884}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.84366876761648}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.50413186088619}, "tsne_x": {"value": -18.0891359146257}, "mds3": {"value": 27.10095048046421}, "umap_x": {"value": -2.1850622}, "pca2": {"value": 0.5040683557327119}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -23.6489177538318}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.635467}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C3382T", "T4744C", "C5907T", "A12410G", "G16197T", "G25537A", "C27737T", "C28748T"]}}}]}]}]}, {"name": "NODE_0001428", "node_attrs": {"div": 33, "num_date": {"value": 2021.0249687640908, "confidence": [2020.9230282571589, 2021.0700622413096]}}, "branch_attrs": {"mutations": {"nuc": ["C15720T", "A21137G", "G25135T"], "S": ["K1191N"]}, "labels": {"aa": "S: K1191N"}}, "children": [{"name": "USA/FL-CDC-QDX21487336/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.072602739726, "confidence": [2021.072602739726, 2021.072602739726]}, "tsne_y": {"value": 23.74492458736301}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.930654761158685}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.522635228052453}, "tsne_x": {"value": -17.663145657865236}, "mds3": {"value": 23.56114678755909}, "umap_x": {"value": -2.4258769}, "pca2": {"value": 0.5006115160395805}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.245337137771063}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.1795387}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C4900T", "A16474G", "C21618T"], "S": ["T19I"]}, "labels": {"aa": "S: T19I"}}}, {"name": "NODE_0001680", "node_attrs": {"div": 33, "num_date": {"value": 2021.0523560816955, "confidence": [2020.9179731495014, 2021.154609432074]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/CA-LACPHL-AF00786/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2205479452055, "confidence": [2021.2205479452055, 2021.2205479452055]}, "tsne_y": {"value": 23.88304686532991}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.447165851764208}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.649000825481291}, "tsne_x": {"value": -17.757631062566634}, "mds3": {"value": 27.737919837751114}, "umap_x": {"value": -2.1657202}, "pca2": {"value": -7.899158342252198}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -24.385864324076504}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.6500354}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C203T", "G1820A", "G9526T", "T19363C", "C23248T"]}}}, {"name": "NODE_0001681", "node_attrs": {"div": 33, "num_date": {"value": 2021.0895188178379, "confidence": [2020.9298047737052, 2021.168262743648]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/FL-CDC-LC0040630/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_y": {"value": 23.935897793246777}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Florida"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.55734768540109}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.741698742486647}, "tsne_x": {"value": -17.834072974513095}, "mds3": {"value": 29.984696409142963}, "umap_x": {"value": -2.157926}, "pca2": {"value": 14.181823780140665}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -24.72836792718605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.670695}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A5068G", "C10036T", "G12479A", "G25250T", "C28045T", "C28087T"], "S": ["V1230L"]}, "labels": {"aa": "S: V1230L"}}}, {"name": "NODE_0001682", "node_attrs": {"div": 33, "num_date": {"value": 2021.1314826299301, "confidence": [2020.9259930598664, 2021.2053209449514]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MN-CDC-ASC210038343/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3328767123287, "confidence": [2021.3328767123287, 2021.3328767123287]}, "tsne_y": {"value": 23.880938504311963}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.76501140517924}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -8.669591889420822}, "tsne_x": {"value": -17.810519826965454}, "mds3": {"value": 28.8771101097348}, "umap_x": {"value": -2.2024627}, "pca2": {"value": -18.286750943762875}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.955486323307465}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.6249423}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C3695T", "A8360G", "C18248T", "G27632A", "C27644T"]}}}, {"name": "NODE_0001430", "node_attrs": {"div": 35, "num_date": {"value": 2021.2961856947243, "confidence": [2021.2015761927723, 2021.3]}}, "branch_attrs": {"mutations": {"nuc": ["C186T", "G28681T"]}}, "children": [{"name": "USA/WV-CDC-LC0053143/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3, "confidence": [2021.3, 2021.3]}, "tsne_y": {"value": 23.687879239764783}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "West Virginia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.71840228794697}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 0.6872515939600352}, "tsne_x": {"value": -17.566678336213418}, "mds3": {"value": 24.96804514378029}, "umap_x": {"value": -2.424626}, "pca2": {"value": 16.243570313144627}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -5.238351901702736}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4783587}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/WV119987/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.354794520548, "confidence": [2021.354794520548, 2021.354794520548]}, "tsne_y": {"value": 23.8843632923998}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "West Virginia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 30.89169557441522}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.644907279929724}, "tsne_x": {"value": -17.761966875483637}, "mds3": {"value": 28.22368654512251}, "umap_x": {"value": -2.122369}, "pca2": {"value": -9.25539765373518}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.072178584740938}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.713769}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A4166G", "C5192T", "A27759-", "T27760-", "T27761-", "G27762-", "A27763-", "A27764-", "C27765-", "T27766-", "T27767-", "T27768-", "C27769-", "A27770-", "T27771-", "T27772-", "A27773-"]}}}]}]}]}]}]}]}]}, {"name": "NODE_0001590", "node_attrs": {"div": 29, "num_date": {"value": 2020.8884759716166, "confidence": [2020.7290763901697, 2021.002544433124]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001656", "node_attrs": {"div": 29, "num_date": {"value": 2020.9713386750086, "confidence": [2020.687304642026, 2021.1100693443307]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0167/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.195890410959, "confidence": [2021.195890410959, 2021.195890410959]}, "tsne_y": {"value": 23.45150580833902}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.32884294555258}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.503308795200669}, "tsne_x": {"value": -16.806287671238838}, "mds3": {"value": 29.51033324651981}, "umap_x": {"value": -2.7520247}, "pca2": {"value": 0.501794595739694}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.982406496873647}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.658177}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2841T", "C14183T", "T26488C", "G26828T", "A27455G", "C27688T"]}}}, {"name": "NODE_0001657", "node_attrs": {"div": 29, "num_date": {"value": 2021.050425637344, "confidence": [2020.6605892096468, 2021.1691545795252]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C90961/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.2616438356165, "confidence": [2021.2616438356165, 2021.2616438356165]}, "tsne_y": {"value": 22.79663037024745}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.630998938702312}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5183802747913355}, "tsne_x": {"value": -16.92362588497254}, "mds3": {"value": 24.30403859217335}, "umap_x": {"value": -2.7030978}, "pca2": {"value": 0.4987666345611792}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.763474080628445}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2658482}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G25650T", "T28705C", "T29726C"]}}}, {"name": "NODE_0001658", "node_attrs": {"div": 29, "num_date": {"value": 2021.0691138633924, "confidence": [2020.6642610820431, 2021.1806964639284]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU223821", "node_attrs": {"div": 35, "num_date": {"value": 2021.3739726027397, "confidence": [2021.3739726027397, 2021.3739726027397]}, "tsne_y": {"value": 22.814734556042133}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Saxony"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.92215206790297}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -7.1225519845652085}, "tsne_x": {"value": -17.480942529588244}, "mds3": {"value": 25.039250525443503}, "umap_x": {"value": -2.4804091}, "pca2": {"value": -14.92163173356822}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.135581111876032}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.9627008}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C6706T", "A17627G", "C21846T", "G22104T", "C27643T", "G28903T"], "S": ["T95I", "G181V"]}, "labels": {"aa": "S: T95I, G181V"}}}, {"name": "USA/NJ-PHEL-21-11152/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3027397260273, "confidence": [2021.3027397260273, 2021.3027397260273]}, "tsne_y": {"value": 22.70308710370404}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.398318834276388}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.513075305465644}, "tsne_x": {"value": -17.9857732125802}, "mds3": {"value": 26.462013676616024}, "umap_x": {"value": -2.3208497}, "pca2": {"value": 0.4905886544407611}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -22.912345875630923}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.4216957}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T99C", "C5284T", "A9238G", "C10369T", "C17004T", "C20930T", "G26062T", "G26065T"]}}}]}]}]}, {"name": "NODE_0001413", "node_attrs": {"div": 30, "num_date": {"value": 2020.9693473653522, "confidence": [2020.823908647781, 2021.0151278072808]}}, "branch_attrs": {"mutations": {"nuc": ["C16468T"]}}, "children": [{"name": "NODE_0001414", "node_attrs": {"div": 31, "num_date": {"value": 2021.0066630775964, "confidence": [2020.9349402638359, 2021.0194543493515]}}, "branch_attrs": {"mutations": {"nuc": ["C21575T"], "S": ["L5F"]}, "labels": {"aa": "S: L5F"}}, "children": [{"name": "NZL/21CV0067/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_y": {"value": 22.839988781557206}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.43366951135271}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 2.343429293567642}, "tsne_x": {"value": -16.87416668899412}, "mds3": {"value": 21.7835637715555}, "umap_x": {"value": -2.8306289}, "pca2": {"value": 1.3893635655041814}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -9.364272829711124}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.632536}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C7203T"]}}}, {"name": "USA/NJ-CDC-ASC210061365/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.3520547945207, "confidence": [2021.3520547945207, 2021.3520547945207]}, "tsne_y": {"value": 22.910354981841746}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Jersey"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 23.619595150080126}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 10.60328485178502}, "tsne_x": {"value": -17.372408339046675}, "mds3": {"value": 25.240245135582462}, "umap_x": {"value": -2.511541}, "pca2": {"value": -15.199654944678205}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -19.615471800802595}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.9290674}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G7936T", "C9979T", "G18891T", "T29765C"]}}}]}, {"name": "NODE_0001415", "node_attrs": {"div": 32, "num_date": {"value": 2021.1164383561643, "confidence": [2021.098419034178, 2021.1164383561643]}}, "branch_attrs": {"mutations": {"nuc": ["T17009G", "C29296T"]}}, "children": [{"name": "NZL/21MV0088/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1301369863013, "confidence": [2021.1301369863013, 2021.1301369863013]}, "tsne_y": {"value": 22.79830164233168}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.774984979012604}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.527616866999572}, "tsne_x": {"value": -16.89616547257715}, "mds3": {"value": 25.41810721982012}, "umap_x": {"value": -2.7962832}, "pca2": {"value": 12.448553819994086}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.48151539666402}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.8253117}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0085/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_y": {"value": 22.799513968055}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.66183633678161}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.908070288288721}, "tsne_x": {"value": -16.891113971396273}, "mds3": {"value": 25.415405883578657}, "umap_x": {"value": -2.8650243}, "pca2": {"value": 13.204997229036916}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.61050251992106}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6841052}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0086/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1246575342466, "confidence": [2021.1246575342466, 2021.1246575342466]}, "tsne_y": {"value": 22.77561498313878}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.945136304642222}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.974104514528415}, "tsne_x": {"value": -16.89742544694512}, "mds3": {"value": 23.101408763918595}, "umap_x": {"value": -2.7521079}, "pca2": {"value": 20.69574702191415}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.69085039153273}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.9961543}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0063/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1164383561643, "confidence": [2021.1164383561643, 2021.1164383561643]}, "tsne_y": {"value": 22.75805587721785}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.81772037697244}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5196857465348512}, "tsne_x": {"value": -16.82630349062464}, "mds3": {"value": 24.02878997272412}, "umap_x": {"value": -2.8729935}, "pca2": {"value": 0.5038636385303303}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.568278629103103}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6485333}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001602", "node_attrs": {"div": 32, "num_date": {"value": 2021.1288159846756, "confidence": [2021.110935737434, 2021.1328767123289]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0096/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1328767123289, "confidence": [2021.1328767123289, 2021.1328767123289]}, "tsne_y": {"value": 22.82218498565697}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.781887006119973}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.095401498404221}, "tsne_x": {"value": -16.928476961331256}, "mds3": {"value": 25.76061274295077}, "umap_x": {"value": -2.8550813}, "pca2": {"value": 13.690102849716087}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.729296028019045}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7356308}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001604", "node_attrs": {"div": 32, "num_date": {"value": 2021.154794520548, "confidence": [2021.126514530208, 2021.154794520548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0105/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.154794520548, "confidence": [2021.154794520548, 2021.154794520548]}, "tsne_y": {"value": 22.79894636145268}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.66234836337059}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.434303165608411}, "tsne_x": {"value": -16.896361747642942}, "mds3": {"value": 26.000131272131668}, "umap_x": {"value": -2.841147}, "pca2": {"value": 12.17965681306902}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.143612033503253}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7089}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0107/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1575342465753, "confidence": [2021.1575342465753, 2021.1575342465753]}, "tsne_y": {"value": 22.816827343238785}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.31537622932733}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.55080018603008}, "tsne_x": {"value": -16.92330474043059}, "mds3": {"value": 24.680483180900005}, "umap_x": {"value": -2.7242453}, "pca2": {"value": 12.626336172181473}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.531105506248473}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2163582}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}, {"name": "NODE_0001684", "node_attrs": {"div": 28, "num_date": {"value": 2020.8329686283816, "confidence": [2020.6655705564615, 2020.9605212007712]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001685", "node_attrs": {"div": 28, "num_date": {"value": 2020.8466036050181, "confidence": [2020.66593940211, 2020.9777407084994]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001686", "node_attrs": {"div": 28, "num_date": {"value": 2020.8810815256647, "confidence": [2020.663252596678, 2020.9811562584234]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0029/2020", "node_attrs": {"div": 32, "num_date": {"value": 2020.9959016393443, "confidence": [2020.9959016393443, 2020.9959016393443]}, "tsne_y": {"value": 22.47621200490511}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.93381411326973}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5186919806551167}, "tsne_x": {"value": -16.51962627915634}, "mds3": {"value": 25.12364891404252}, "umap_x": {"value": -2.8287299}, "pca2": {"value": 0.4979651239793694}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.93336055498929}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7850177}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G10193A", "A10195T", "T17020G", "C24502T"]}}}, {"name": "NODE_0001380", "node_attrs": {"div": 29, "num_date": {"value": 2020.9711536909842, "confidence": [2020.7112198087113, 2021.141614656685]}}, "branch_attrs": {"mutations": {"nuc": ["G26834T"]}}, "children": [{"name": "KEN/C91914/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.286301369863, "confidence": [2021.286301369863, 2021.286301369863]}, "tsne_y": {"value": 22.76711864504366}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.56022696639393}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 0.7850571522506761}, "tsne_x": {"value": -15.878223946432062}, "mds3": {"value": 24.756021283454}, "umap_x": {"value": -2.4395907}, "pca2": {"value": 2.598750440901377}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.082135984500024}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.8437264}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A57G", "C11580T", "C21812T", "C24382T", "A25020C"], "S": ["D1153A"]}, "labels": {"aa": "S: D1153A"}}}, {"name": "IMS-10218-CVDP-2DD06E37-961F-4B58-82CB-4ECD5ADECECE", "node_attrs": {"div": 37, "num_date": {"value": 2021.2972602739726, "confidence": [2021.2972602739726, 2021.2972602739726]}, "tsne_y": {"value": 21.81167845314093}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.53713221721596}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -1.5325196601004705}, "tsne_x": {"value": -17.745035672998814}, "mds3": {"value": 21.54286873700644}, "umap_x": {"value": -2.8672976}, "pca2": {"value": 4.830761211985926}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -9.749365583549343}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7572234}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G8642A", "A11439G", "A16644G", "G18412A", "C27431T", "G28111A", "C28677T", "C29625T"]}}}]}]}, {"name": "NODE_0001385", "node_attrs": {"div": 29, "num_date": {"value": 2020.8939255724113, "confidence": [2020.739313969658, 2021.0115467855007]}}, "branch_attrs": {"mutations": {"nuc": ["C2453T"]}}, "children": [{"name": "NODE_0001386", "node_attrs": {"div": 30, "num_date": {"value": 2021.1102852962074, "confidence": [2020.9575572187389, 2021.2498536863338]}}, "branch_attrs": {"mutations": {"nuc": ["G21974C"], "S": ["D138H"]}, "labels": {"aa": "S: D138H"}}, "children": [{"name": "USA/MD-CDC-ASC210109423/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4479452054795, "confidence": [2021.4479452054795, 2021.4479452054795]}, "tsne_y": {"value": 23.55793420907161}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Maryland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.534299013950367}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.397928695398809}, "tsne_x": {"value": -15.690328420772584}, "mds3": {"value": 29.08883340817178}, "umap_x": {"value": -2.3933342}, "pca2": {"value": -7.48467738545876}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.31546016384065}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.256649}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1185T", "A6790G", "G18379T", "C21855T", "C22202T", "C26873T"], "S": ["S98F", "R214C"]}, "labels": {"aa": "S: S98F, R214C"}}}, {"name": "NODE_0001387", "node_attrs": {"div": 31, "num_date": {"value": 2021.2067311908356, "confidence": [2021.124008027674, 2021.2698630136986]}}, "branch_attrs": {"mutations": {"nuc": ["T23031C"], "S": ["F490S"]}, "labels": {"aa": "S: F490S"}}, "children": [{"name": "KEN/C98735/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.4123287671232, "confidence": [2021.4123287671232, 2021.4123287671232]}, "tsne_y": {"value": 22.86453063541664}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 16.38524733233619}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 2.756865352883356}, "tsne_x": {"value": -15.99028379432032}, "mds3": {"value": 24.95098635226132}, "umap_x": {"value": -2.81727}, "pca2": {"value": 5.297331966585836}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.911570590075558}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6204584}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G3969A", "T23866A"]}}}, {"name": "KEN/SS7156/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2698630136986, "confidence": [2021.2698630136986, 2021.2698630136986]}, "tsne_y": {"value": 22.868807583693403}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.22185845079234}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -0.3317180318234043}, "tsne_x": {"value": -16.089453234878096}, "mds3": {"value": 26.000276576996573}, "umap_x": {"value": -2.8752656}, "pca2": {"value": 4.401002965987573}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.781299531595582}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.8297093}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C21110T", "G24998A"], "S": ["D1146N"]}, "labels": {"aa": "S: D1146N"}}}]}]}, {"name": "NODE_0001691", "node_attrs": {"div": 29, "num_date": {"value": 2020.9129447165951, "confidence": [2020.7397001665202, 2021.0125223837329]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0083/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_y": {"value": 23.03858810185432}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.55995337866151}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.484931740866137}, "tsne_x": {"value": -16.024748309439605}, "mds3": {"value": 21.72026503954436}, "umap_x": {"value": -2.484704}, "pca2": {"value": 0.519051341911486}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.65944140052947}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.7896554}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G210T", "C1190T", "C2536T", "T9454C", "C27575T"]}}}, {"name": "NODE_0001389", "node_attrs": {"div": 32, "num_date": {"value": 2021.0643835616438, "confidence": [2021.0156128555077, 2021.0643835616438]}}, "branch_attrs": {"mutations": {"nuc": ["A8512G", "C18171T", "G20476A"]}}, "children": [{"name": "NZL/21MV0049/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.0890410958905, "confidence": [2021.0890410958905, 2021.0890410958905]}, "tsne_y": {"value": 22.8076710219066}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.99495269965636}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5229612855746275}, "tsne_x": {"value": -16.163679432470847}, "mds3": {"value": 26.71319793379994}, "umap_x": {"value": -2.8371267}, "pca2": {"value": 0.4993471077582048}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.206615540252946}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.0904913}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C25511T"]}}}, {"name": "NZL/21MV0002/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0643835616438, "confidence": [2021.0643835616438, 2021.0643835616438]}, "tsne_y": {"value": 22.69258570338837}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.3157112560478}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.445282869848072}, "tsne_x": {"value": -16.268640619481317}, "mds3": {"value": 24.80610043178848}, "umap_x": {"value": -2.813032}, "pca2": {"value": 11.900030777092343}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.355037353463889}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.1128175}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001433", "node_attrs": {"div": 29, "num_date": {"value": 2020.861975009016, "confidence": [2020.7428884646783, 2020.971583717789]}}, "branch_attrs": {"mutations": {"nuc": ["A28095T"]}}, "children": [{"name": "NODE_0001434", "node_attrs": {"div": 32, "num_date": {"value": 2021.006031080182, "confidence": [2020.9633744578098, 2021.0205479452054]}}, "branch_attrs": {"mutations": {"nuc": ["T15096C", "G25785T", "G29764A"]}}, "children": [{"name": "Lebanon/QIB-128/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.0698630136985, "confidence": [2021.0698630136985, 2021.0698630136985]}, "tsne_y": {"value": 21.1799421800464}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.184174166120727}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.289960904478338}, "tsne_x": {"value": -16.002064391639752}, "mds3": {"value": 26.790551323544072}, "umap_x": {"value": -2.7838378}, "pca2": {"value": 4.162204996711737}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.68240949207174}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.1600072}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T1724C", "C25658T"]}}}, {"name": "LBN/Lebanon3-B.1.1.7/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0205479452054, "confidence": [2021.0205479452054, 2021.0205479452054]}, "tsne_y": {"value": 21.446402893336817}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 20.490264316752647}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 45.82156358499477}, "tsne_x": {"value": -16.131552383530323}, "mds3": {"value": 22.04311082188072}, "umap_x": {"value": -2.832457}, "pca2": {"value": -0.5190447872996707}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.895542676585654}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6300132}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001617", "node_attrs": {"div": 32, "num_date": {"value": 2021.0143057060538, "confidence": [2020.9622888497677, 2021.0636735069052]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-178/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.1054794520549, "confidence": [2021.1054794520549, 2021.1054794520549]}, "tsne_y": {"value": 21.204877633000027}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.06516135990017}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.038022651580581}, "tsne_x": {"value": -16.063601567542985}, "mds3": {"value": 24.231358437648577}, "umap_x": {"value": -2.8413699}, "pca2": {"value": 7.5253690301562735}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.862912341587382}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.1470008}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C13730T", "C21811T"]}}}, {"name": "NODE_0001695", "node_attrs": {"div": 32, "num_date": {"value": 2021.0271581194022, "confidence": [2020.9676583768514, 2021.089198291769]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-625/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2123287671234, "confidence": [2021.2123287671234, 2021.2123287671234]}, "tsne_y": {"value": 21.31244737282123}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.33160077665769}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.651324044882456}, "tsne_x": {"value": -16.08475672678813}, "mds3": {"value": 25.09554192940348}, "umap_x": {"value": -2.697592}, "pca2": {"value": -1.438223364217474}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.879511528220316}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.3703425}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C20480T"]}}}, {"name": "NODE_0001696", "node_attrs": {"div": 32, "num_date": {"value": 2021.0477055900562, "confidence": [2020.9659856392263, 2021.0952853168276]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-359/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_y": {"value": 20.87177933323157}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.735475762459146}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.8169932891198015}, "tsne_x": {"value": -15.708796479228615}, "mds3": {"value": 28.03219553065336}, "umap_x": {"value": -2.3136644}, "pca2": {"value": -1.4981514017219406}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.595678514023234}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.434001}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A1239G", "G1640A", "A4528G", "C5144T", "G14874T"]}}}, {"name": "NODE_0001697", "node_attrs": {"div": 32, "num_date": {"value": 2021.0490371628061, "confidence": [2021.0187482576355, 2021.1036498760973]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001698", "node_attrs": {"div": 32, "num_date": {"value": 2021.0679145197287, "confidence": [2021.0241664634386, 2021.1049127710885]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-367/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1493150684933, "confidence": [2021.1493150684933, 2021.1493150684933]}, "tsne_y": {"value": 21.31409848773292}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.997919074010543}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.308322038882903}, "tsne_x": {"value": -16.074563934057593}, "mds3": {"value": 25.24510192160891}, "umap_x": {"value": -2.6461678}, "pca2": {"value": -2.910527667608881}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.496618601327777}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4263356}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C23457T"], "S": ["T632I"]}, "labels": {"aa": "S: T632I"}}}, {"name": "NODE_0001699", "node_attrs": {"div": 32, "num_date": {"value": 2021.0800819228023, "confidence": [2021.0279611626484, 2021.1082191780822]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-440/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_y": {"value": 20.845003841701047}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.0342401152752}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 1.86224004912744}, "tsne_x": {"value": -15.707724766176428}, "mds3": {"value": 26.59019816007227}, "umap_x": {"value": -2.58522}, "pca2": {"value": -0.5348952043610217}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -9.101229127890688}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5500321}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1593T", "C2676T", "G4444A", "C6336T", "C15960T"]}}}, {"name": "Lebanon/QIB-188/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1082191780822, "confidence": [2021.1082191780822, 2021.1082191780822]}, "tsne_y": {"value": 21.31787703290159}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.13772660495001}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.832369057023146}, "tsne_x": {"value": -16.108649845430374}, "mds3": {"value": 23.820374706177507}, "umap_x": {"value": -2.6419973}, "pca2": {"value": 10.321301838701208}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.9857377294885}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.280018}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C27532T"]}}}]}]}, {"name": "NODE_0001700", "node_attrs": {"div": 32, "num_date": {"value": 2021.0672682580953, "confidence": [2021.02191643218, 2021.112861075608]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-331/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.1465753424657, "confidence": [2021.1465753424657, 2021.1465753424657]}, "tsne_y": {"value": 21.089853137071}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.975277485346105}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.817757180667261}, "tsne_x": {"value": -15.8848831957559}, "mds3": {"value": 27.756115586823903}, "umap_x": {"value": -2.752807}, "pca2": {"value": -1.5025743413381116}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.906398926718083}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.3910365}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T820C", "A18836G", "C29272T"]}}}, {"name": "NODE_0001701", "node_attrs": {"div": 32, "num_date": {"value": 2021.081349204083, "confidence": [2021.0094824509497, 2021.155529092743]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-451/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_y": {"value": 21.3183798263932}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.175759105707822}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.577215084619153}, "tsne_x": {"value": -16.084692613572095}, "mds3": {"value": 25.057549713406218}, "umap_x": {"value": -2.7576826}, "pca2": {"value": -5.7843990349473735}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.754209252525474}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2487788}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A19953G"]}}}, {"name": "NODE_0001702", "node_attrs": {"div": 32, "num_date": {"value": 2021.1033131611098, "confidence": [2021.009272224985, 2021.1550154378715]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001703", "node_attrs": {"div": 32, "num_date": {"value": 2021.120406044178, "confidence": [2021.0104159390055, 2021.1640448453977]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-505/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.1876712328767, "confidence": [2021.1876712328767, 2021.1876712328767]}, "tsne_y": {"value": 21.110014975798503}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.656138097565965}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.742113689725371}, "tsne_x": {"value": -15.919995236415394}, "mds3": {"value": 28.853650651378416}, "umap_x": {"value": -2.8064358}, "pca2": {"value": -1.0841985341451286}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.01541722895256}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.3640535}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1912T", "C19763T"]}}}, {"name": "Lebanon/QIB-711/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2452054794521, "confidence": [2021.2452054794521, 2021.2452054794521]}, "tsne_y": {"value": 20.99457917094696}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.827340776170804}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.671787810816728}, "tsne_x": {"value": -15.824850423193926}, "mds3": {"value": 28.54987831488482}, "umap_x": {"value": -2.581653}, "pca2": {"value": -1.0551815214109366}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.322072471112072}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.0043316}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C6701T", "T19980C", "T20520A", "T24490C"]}}}]}, {"name": "NODE_0001704", "node_attrs": {"div": 32, "num_date": {"value": 2021.1117021953287, "confidence": [2021.0117213247297, 2021.161075323188]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-637/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2260273972602, "confidence": [2021.2260273972602, 2021.2260273972602]}, "tsne_y": {"value": 20.870538643389217}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.60715106652568}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.458427823335966}, "tsne_x": {"value": -15.659999998268916}, "mds3": {"value": 29.26568536599512}, "umap_x": {"value": -2.4783933}, "pca2": {"value": -5.569865915684803}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -11.827124135843466}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.0386877}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C823T", "C3140T", "C6730T", "T15279C", "C19290T"]}}}, {"name": "NODE_0001705", "node_attrs": {"div": 32, "num_date": {"value": 2021.1312972657067, "confidence": [2021.002911416197, 2021.190410958904]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-541/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.190410958904, "confidence": [2021.190410958904, 2021.190410958904]}, "tsne_y": {"value": 21.301197723400698}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.76144598844364}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.311904333941404}, "tsne_x": {"value": -16.056964226881934}, "mds3": {"value": 26.299294009867868}, "umap_x": {"value": -2.8007686}, "pca2": {"value": -5.189587146685824}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.628391595986304}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7198122}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001706", "node_attrs": {"div": 32, "num_date": {"value": 2021.1413436333373, "confidence": [2021.0039901532796, 2021.2320077969978]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-698/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2397260273972, "confidence": [2021.2397260273972, 2021.2397260273972]}, "tsne_y": {"value": 20.829666292105127}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 29.653946339708067}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 1.764905928182039}, "tsne_x": {"value": -15.770693454532145}, "mds3": {"value": 22.577554770734007}, "umap_x": {"value": -2.5026584}, "pca2": {"value": 12.432339168076044}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -11.265476847758428}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.6095486}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C7471T", "G10396C", "G22205C", "T27384C", "G28857T"], "S": ["D215H"]}, "labels": {"aa": "S: D215H"}}}, {"name": "NODE_0001707", "node_attrs": {"div": 32, "num_date": {"value": 2021.1670700007382, "confidence": [2021.0022264384193, 2021.2346923098683]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-859/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3164383561643, "confidence": [2021.3164383561643, 2021.3164383561643]}, "tsne_y": {"value": 20.728950668510265}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.4461633136718}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.4934134963975088}, "tsne_x": {"value": -15.58173990175728}, "mds3": {"value": 30.856054242417688}, "umap_x": {"value": -2.401763}, "pca2": {"value": 0.5289377165412376}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.273297024409704}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.2866406}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A156G", "C5183T", "G14653T", "T17070C", "A22976G", "G29212A"], "S": ["I472V"]}, "labels": {"aa": "S: I472V"}}}, {"name": "NODE_0001708", "node_attrs": {"div": 32, "num_date": {"value": 2021.190370054273, "confidence": [2021.0516338578439, 2021.2692736503564]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EGY/Egypt-Army-Thirdwave344/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.3328767123287, "confidence": [2021.3328767123287, 2021.3328767123287]}, "tsne_y": {"value": 20.670027388167213}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 14.940386051713531}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -8.2925904944671}, "tsne_x": {"value": -15.30760786030315}, "mds3": {"value": 28.012012568113256}, "umap_x": {"value": -2.7376752}, "pca2": {"value": -15.018520500080804}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -19.92570061263505}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4882154}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["-11288T", "-11289C", "-11290T", "-11291G", "-11292G", "-11293T", "-11294T", "-11295T", "-11296T", "A21457G", "-21765T", "-21766A", "-21767C", "-21768A", "-21769T", "-21770G", "-21992T", "-21993A", "-21994T", "T28048G", "-28271A", "C28531T", "C28754T"], "S": ["X68I", "-69H", "X70V", "-144Y", "X1274*"]}, "labels": {"aa": "S: X68I, -69H, X70V, -144Y, X1274*"}}}, {"name": "NODE_0001709", "node_attrs": {"div": 32, "num_date": {"value": 2021.2186933425496, "confidence": [2021.0549648715737, 2021.3219178082193]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Lebanon/QIB-880/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.3219178082193, "confidence": [2021.3219178082193, 2021.3219178082193]}, "tsne_y": {"value": 21.31442509873026}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Lebanon"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.07007252445716}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.480797874792563}, "tsne_x": {"value": -16.07013856277276}, "mds3": {"value": 25.24146259868948}, "umap_x": {"value": -2.6253963}, "pca2": {"value": -5.569908896790452}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.701545035531923}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.3546486}, "country": {"value": "Lebanon"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T606C"]}}}, {"name": "NODE_0001710", "node_attrs": {"div": 32, "num_date": {"value": 2021.253881152661, "confidence": [2021.0511435386998, 2021.3238194735452]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "Denmark/DCGC-121104/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_y": {"value": 20.62348174485086}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Midtjylland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.02744601050933}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 11.70053773554539}, "tsne_x": {"value": -15.401656665170451}, "mds3": {"value": 24.096540337915027}, "umap_x": {"value": -2.4404473}, "pca2": {"value": 1.9997343239441183}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -22.184071254131823}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.1888175}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G3250T", "T8473C", "G11083T", "C18131T", "T18499C", "-21994T", "A29827G"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "USA/MD-MDH-2900/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.4753424657533, "confidence": [2021.4753424657533, 2021.4753424657533]}, "tsne_y": {"value": 20.553136022111048}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Maryland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.83411976006543}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.641061682883884}, "tsne_x": {"value": -15.397831392629284}, "mds3": {"value": 31.730932060624003}, "umap_x": {"value": -2.1928618}, "pca2": {"value": -11.02770885354744}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.736353877090917}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.6364093}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C897T", "C5020T", "G15586A", "C21721T", "A23080G", "C27527T", "C28093T", "-28271A"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0001490", "node_attrs": {"div": 29, "num_date": {"value": 2020.880790642147, "confidence": [2020.7420593412369, 2020.9856647940248]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001491", "node_attrs": {"div": 31, "num_date": {"value": 2020.9543241620197, "confidence": [2020.8441332050836, 2021.000953993036]}}, "branch_attrs": {"mutations": {"nuc": ["C6968T", "C16887T"]}}, "children": [{"name": "NODE_0001492", "node_attrs": {"div": 32, "num_date": {"value": 2021.0013698630137, "confidence": [2020.9711523180304, 2021.0013698630137]}}, "branch_attrs": {"mutations": {"nuc": ["C29541T"]}}, "children": [{"name": "NZL/21CV0005/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0013698630137, "confidence": [2021.0013698630137, 2021.0013698630137]}, "tsne_y": {"value": 22.01513753914057}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.658444423443704}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.476608746676278}, "tsne_x": {"value": -16.369962811039663}, "mds3": {"value": 25.037408851605388}, "umap_x": {"value": -2.823367}, "pca2": {"value": 15.716359331829556}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.020251128858948}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.677148}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CV0010/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0013698630137, "confidence": [2021.0013698630137, 2021.0013698630137]}, "tsne_y": {"value": 21.988810288563545}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.82563842761085}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.508446555036961}, "tsne_x": {"value": -16.349845967171113}, "mds3": {"value": 24.63196402099127}, "umap_x": {"value": -2.8713903}, "pca2": {"value": 0.5245607829047957}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.958950735411827}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.0887167}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001493", "node_attrs": {"div": 33, "num_date": {"value": 2021.0474036261598, "confidence": [2020.959229091794, 2021.073561740744]}}, "branch_attrs": {"mutations": {"nuc": ["C4784T", "C23664T", "-28271A"], "S": ["A701V"]}, "labels": {"aa": "S: A701V"}}, "children": [{"name": "BRA/GO-DNAGYN-25/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_y": {"value": 21.69631956079366}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Goi\u00e1s"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.63888636890222}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.358970666771019}, "tsne_x": {"value": -17.028369474656607}, "mds3": {"value": 30.729966081984863}, "umap_x": {"value": -2.8035824}, "pca2": {"value": -7.830126195456553}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.14238847528664}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.536514}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C3738T", "-21992T", "-21994T", "C27619T"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "BRA/GO-DNAGYN-29/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_y": {"value": 21.81645072364104}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Goi\u00e1s"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.701619545502577}, "region": {"value": "South America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.040642797633078}, "tsne_x": {"value": -16.671962747376526}, "mds3": {"value": 29.27728160781709}, "umap_x": {"value": -2.7751288}, "pca2": {"value": -7.822737080644073}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.70714856422408}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4284616}, "country": {"value": "Brazil"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T14408C"]}}}]}]}, {"name": "NODE_0001494", "node_attrs": {"div": 31, "num_date": {"value": 2020.9509104821916, "confidence": [2020.7982195347568, 2021.018451378217]}}, "branch_attrs": {"mutations": {"nuc": ["C2110T", "C14120T"]}}, "children": [{"name": "NGA/CV686/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.031506849315, "confidence": [2021.031506849315, 2021.031506849315]}, "tsne_y": {"value": 22.15368659871192}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Nigeria"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.677811896801988}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.705913474511292}, "tsne_x": {"value": -15.523374429304804}, "mds3": {"value": 26.27311804204689}, "umap_x": {"value": -2.8246782}, "pca2": {"value": -6.7919875183079865}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.57556869292381}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2591324}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G1828T", "C15540T"]}}}, {"name": "NODE_0001497", "node_attrs": {"div": 32, "num_date": {"value": 2021.031911802338, "confidence": [2020.9470627439352, 2021.093276734064]}}, "branch_attrs": {"mutations": {"nuc": ["C19390T"]}}, "children": [{"name": "NODE_0001717", "node_attrs": {"div": 32, "num_date": {"value": 2021.0685522600852, "confidence": [2020.952941743781, 2021.1835249100395]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/VA-CDC-LC0065738/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3712328767124, "confidence": [2021.3712328767124, 2021.3712328767124]}, "tsne_y": {"value": 22.039997775679847}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Virginia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 19.39992286748128}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.116512260011487}, "tsne_x": {"value": -14.763904298332704}, "mds3": {"value": 23.987899545123607}, "umap_x": {"value": -2.8002908}, "pca2": {"value": 39.99046308077032}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -21.97986461523259}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.4881432}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A2483G", "G2782T", "C4456T", "C16733T", "C23683T", "A28467G"]}}}, {"name": "USA/PA-CDC-STM-000071239/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3438356164384, "confidence": [2021.3438356164384, 2021.3438356164384]}, "tsne_y": {"value": 22.275168417040547}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Pennsylvania"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.37180054116716}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.472273576262005}, "tsne_x": {"value": -14.882373418090786}, "mds3": {"value": 29.552093878656745}, "umap_x": {"value": -2.496754}, "pca2": {"value": -7.733286874958442}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.797169979709885}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.1532865}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1594T", "A7548G", "C13551T", "G22567T", "C28890T"], "S": ["L335F"]}, "labels": {"aa": "S: L335F"}}}]}, {"name": "NODE_0001499", "node_attrs": {"div": 33, "num_date": {"value": 2021.0697738576928, "confidence": [2021.0151942808914, 2021.1151130550973]}}, "branch_attrs": {"mutations": {"nuc": ["T7984C"]}}, "children": [{"name": "USA/CO-CDPHE-2100459198/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.1219178082192, "confidence": [2021.1219178082192, 2021.1219178082192]}, "tsne_y": {"value": 22.251856168774577}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 28.04788359843685}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 13.681116506295051}, "tsne_x": {"value": -15.097970789167803}, "mds3": {"value": 20.180208782638204}, "umap_x": {"value": -2.6278193}, "pca2": {"value": 14.01220333725475}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -12.396420453551832}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.3421018}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G960A", "C6395T", "C6539T"]}}}, {"name": "NODE_0001719", "node_attrs": {"div": 33, "num_date": {"value": 2021.154794520548, "confidence": [2021.0925572233775, 2021.154794520548]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/SS2961/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.154794520548, "confidence": [2021.154794520548, 2021.154794520548]}, "tsne_y": {"value": 22.16514924871038}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.87537567382856}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 7.666738184636898}, "tsne_x": {"value": -15.46388793977833}, "mds3": {"value": 22.61752086220259}, "umap_x": {"value": -2.7484608}, "pca2": {"value": 3.961330139806881}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.870841058143684}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.150119}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NODE_0001720", "node_attrs": {"div": 33, "num_date": {"value": 2021.184841127508, "confidence": [2021.0816469076926, 2021.2611758416879]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/MI-MDHHS-SC29803/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_y": {"value": 22.34978893876048}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Michigan"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.091980983844216}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.177007064926045}, "tsne_x": {"value": -15.328228653450228}, "mds3": {"value": 27.268217091487056}, "umap_x": {"value": -2.7910795}, "pca2": {"value": -3.4966018596841577}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.616263226044698}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.245823}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["-11291A", "-11292G", "-11293T", "-11294T", "-11295T", "-11296G", "C17977T", "-28271A"]}}}, {"name": "SouthAfrica/NHLS-UCT-AM-Z044/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_y": {"value": 22.20579479476157}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "South Africa"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.55088445377395}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.571347849861936}, "tsne_x": {"value": -14.884306656963467}, "mds3": {"value": 28.576967069090724}, "umap_x": {"value": -2.3083324}, "pca2": {"value": 2.677376949105954}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.165611595330075}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.475835}, "country": {"value": "South Africa"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G3728T", "C25782T", "C27641T", "G29674A"]}}}]}]}]}]}, {"name": "NODE_0001721", "node_attrs": {"div": 31, "num_date": {"value": 2020.9616137959554, "confidence": [2020.801542084442, 2021.0248427678496]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001722", "node_attrs": {"div": 31, "num_date": {"value": 2021.00624213926, "confidence": [2020.7982295135837, 2021.094250349985]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-23079/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.1027397260275, "confidence": [2021.1027397260275, 2021.1027397260275]}, "tsne_y": {"value": 22.13755970799526}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.22799301548857}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5253615826139577}, "tsne_x": {"value": -15.370565239201218}, "mds3": {"value": 27.55258649817024}, "umap_x": {"value": -2.7451577}, "pca2": {"value": 0.6404198872425901}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.138158365920646}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.293735}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C4540T", "G25311T", "T26302A"], "S": ["C1250F"]}, "labels": {"aa": "S: C1250F"}}}, {"name": "NODE_0001723", "node_attrs": {"div": 31, "num_date": {"value": 2021.067451545505, "confidence": [2020.7665080195352, 2021.1922772940761]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "USA/OH-CDC-LC0085911/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.4753424657533, "confidence": [2021.4753424657533, 2021.4753424657533]}, "tsne_y": {"value": 22.55341623467276}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Ohio"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.922339559197805}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.248358246849096}, "tsne_x": {"value": -14.669501989211875}, "mds3": {"value": 28.86807397842072}, "umap_x": {"value": -2.247366}, "pca2": {"value": 2.0621370065001443}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.345277137521688}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.5768194}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1060T", "C2062T", "C11344T", "C11902T", "C12525T", "A23167G", "T27462C"]}}}, {"name": "OU166445", "node_attrs": {"div": 35, "num_date": {"value": 2021.2972602739726, "confidence": [2021.2972602739726, 2021.2972602739726]}, "tsne_y": {"value": 22.325626521002352}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Saxony"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.178183788365544}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -7.143181287884329}, "tsne_x": {"value": -15.365144498723526}, "mds3": {"value": 27.12710990652633}, "umap_x": {"value": -2.8455727}, "pca2": {"value": -14.917749967380464}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.534015616437276}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5244956}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2508T", "C2675T", "A13715G", "C18555T"]}}}]}]}, {"name": "NODE_0001724", "node_attrs": {"div": 31, "num_date": {"value": 2020.9703819019176, "confidence": [2020.8031500119644, 2021.0274592903263]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001503", "node_attrs": {"div": 32, "num_date": {"value": 2020.9986164077845, "confidence": [2020.8844093849534, 2021.0472027536453]}}, "branch_attrs": {"mutations": {"nuc": ["G7042T"]}}, "children": [{"name": "NODE_0001504", "node_attrs": {"div": 36, "num_date": {"value": 2021.069727771711, "confidence": [2021.0436418623297, 2021.0835616438355]}}, "branch_attrs": {"mutations": {"nuc": ["T892C", "G6421T", "G26558T", "C27509T"]}}, "children": [{"name": "VNM/OUCRU-NHTD_B108/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_y": {"value": 22.17168051227662}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.26251726462164}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.57205337052624}, "tsne_x": {"value": -14.998926453267693}, "mds3": {"value": 29.510204122713944}, "umap_x": {"value": -2.6031187}, "pca2": {"value": -5.092514198347244}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.867883581466568}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.0101295}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "VNM/OUCRU-NHTD_B201/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.0835616438355, "confidence": [2021.0835616438355, 2021.0835616438355]}, "tsne_y": {"value": 22.196031029031776}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Vietnam"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.55598087469881}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.976424282623344}, "tsne_x": {"value": -14.885536650906378}, "mds3": {"value": 30.84144145636337}, "umap_x": {"value": -2.429407}, "pca2": {"value": -6.291244105864813}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.599620241150394}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.2905993}, "country": {"value": "Vietnam"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T23956G"]}}}]}, {"name": "NODE_0001727", "node_attrs": {"div": 32, "num_date": {"value": 2021.0130858509665, "confidence": [2020.887554567091, 2021.0592077191877]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001507", "node_attrs": {"div": 35, "num_date": {"value": 2021.0800189198085, "confidence": [2021.0481738910373, 2021.0910489594403]}}, "branch_attrs": {"mutations": {"nuc": ["A2563G", "G5992A", "G28922T"]}}, "children": [{"name": "KEN/KEM-21-02-91552/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_y": {"value": 22.142649558179777}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.99466683003963}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.725398524190347}, "tsne_x": {"value": -15.045458406952894}, "mds3": {"value": 30.25429317415188}, "umap_x": {"value": -2.6436718}, "pca2": {"value": 14.213316971207805}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.38911063448468}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.8947191}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A3058T"]}}}, {"name": "KEN/KEM-21-02-91533/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_y": {"value": 22.1450751700922}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.766454436247404}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.727072086903169}, "tsne_x": {"value": -15.161623744172616}, "mds3": {"value": 28.37297242135089}, "umap_x": {"value": -2.6061049}, "pca2": {"value": 14.215445753227804}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.701914508426622}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.8884737}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001729", "node_attrs": {"div": 32, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0402447605743, 2021.0917808219178]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-22793/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0917808219178, "confidence": [2021.0917808219178, 2021.0917808219178]}, "tsne_y": {"value": 22.1340051913838}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.06770783728791}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5238301679656154}, "tsne_x": {"value": -15.611376478249186}, "mds3": {"value": 24.717874943841228}, "umap_x": {"value": -2.7092712}, "pca2": {"value": 0.6407093829800102}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.66060522552121}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2058406}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/SEARCH-101082/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.3328767123287, "confidence": [2021.3328767123287, 2021.3328767123287]}, "tsne_y": {"value": 22.08097298195492}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "California"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.97671764051664}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.404227522367571}, "tsne_x": {"value": -15.497973810636385}, "mds3": {"value": 24.278752791599373}, "umap_x": {"value": -2.8324199}, "pca2": {"value": 23.72686684544217}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.286792198205063}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.7867465}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G29227T"]}}}]}]}]}, {"name": "NODE_0001730", "node_attrs": {"div": 31, "num_date": {"value": 2020.9968955672466, "confidence": [2020.8013806352844, 2021.0383374202638]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NGA/BCVL-24209/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.1328767123289, "confidence": [2021.1328767123289, 2021.1328767123289]}, "tsne_y": {"value": 22.140273506895088}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Oyo State"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.56326434808568}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5251838811632843}, "tsne_x": {"value": -15.36578516447287}, "mds3": {"value": 26.76678179180164}, "umap_x": {"value": -2.8278067}, "pca2": {"value": 0.6417535850941198}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.78036047172534}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.6150484}, "country": {"value": "Nigeria"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G4300T", "C12596T", "C21642T"], "S": ["A27V"]}, "labels": {"aa": "S: A27V"}}}, {"name": "NODE_0001511", "node_attrs": {"div": 34, "num_date": {"value": 2021.0680030742203, "confidence": [2021.0057912271986, 2021.132217987711]}}, "branch_attrs": {"mutations": {"nuc": ["C2544T", "C12809T", "T26604C"]}}, "children": [{"name": "NODE_0001512", "node_attrs": {"div": 37, "num_date": {"value": 2021.176712328767, "confidence": [2021.1424575173057, 2021.176712328767]}}, "branch_attrs": {"mutations": {"nuc": ["C11653T", "A23796G", "C24863T"], "S": ["D745G", "H1101Y"]}, "labels": {"aa": "S: D745G, H1101Y"}}, "children": [{"name": "NZL/21CV0178/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_y": {"value": 22.064109904180786}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.64192305094381}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.562084129880594}, "tsne_x": {"value": -14.575088630283837}, "mds3": {"value": 31.13819747437672}, "umap_x": {"value": -2.3667276}, "pca2": {"value": 12.820723155839785}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.617886988589902}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.338988}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0131/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.176712328767, "confidence": [2021.176712328767, 2021.176712328767]}, "tsne_y": {"value": 22.065837318229743}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.62431235543736}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5085306839511903}, "tsne_x": {"value": -14.575798693439465}, "mds3": {"value": 29.630682710813183}, "umap_x": {"value": -2.3703716}, "pca2": {"value": 0.5280020123581872}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.812476765500687}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.3699613}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001513", "node_attrs": {"div": 35, "num_date": {"value": 2021.116737309914, "confidence": [2021.0599438857723, 2021.1552517992723]}}, "branch_attrs": {"mutations": {"nuc": ["T27940C"]}}, "children": [{"name": "NZL/21MV0318/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2671232876712, "confidence": [2021.2671232876712, 2021.2671232876712]}, "tsne_y": {"value": 22.07139742468416}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.62599817799323}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5097367738564613}, "tsne_x": {"value": -14.697019319628248}, "mds3": {"value": 28.65506834111105}, "umap_x": {"value": -2.3601665}, "pca2": {"value": 0.524526444353138}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.337853446696013}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.3858895}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C5310T"]}}}, {"name": "NODE_0001514", "node_attrs": {"div": 38, "num_date": {"value": 2021.176712328767, "confidence": [2021.1530783892026, 2021.176712328767]}}, "branch_attrs": {"mutations": {"nuc": ["C17676T", "C27881T", "G29737T"]}}, "children": [{"name": "NZL/21MV0129/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.176712328767, "confidence": [2021.176712328767, 2021.176712328767]}, "tsne_y": {"value": 22.057667432787028}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.637475746375014}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.5078507922659754}, "tsne_x": {"value": -14.56823435857663}, "mds3": {"value": 31.041627416579647}, "umap_x": {"value": -2.5452812}, "pca2": {"value": 0.5797643998420435}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.81528481239149}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.1225114}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0181/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.1849315068494, "confidence": [2021.1849315068494, 2021.1849315068494]}, "tsne_y": {"value": 22.06437854987961}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 26.476889117567016}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 32.59264100492169}, "tsne_x": {"value": -14.460071264451225}, "mds3": {"value": 30.59519176119311}, "umap_x": {"value": -2.2376852}, "pca2": {"value": -1.4361774989968423}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.19842276890569}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.56602}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}]}]}]}]}, {"name": "NODE_0001735", "node_attrs": {"div": 30, "num_date": {"value": 2020.922232318731, "confidence": [2020.7930887468585, 2021.0238530639979]}}, "branch_attrs": {"mutations": {"nuc": ["T15096C"]}}, "children": [{"name": "NODE_0001736", "node_attrs": {"div": 30, "num_date": {"value": 2020.9532040986965, "confidence": [2020.790987461077, 2021.032810065513]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU085696", "node_attrs": {"div": 37, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_y": {"value": 20.840954419576967}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.220488935904047}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.8532029928893454}, "tsne_x": {"value": -16.68001187268812}, "mds3": {"value": 28.271607329379872}, "umap_x": {"value": -2.6929207}, "pca2": {"value": -3.709553611436151}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -8.986945921781686}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5971158}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C5512T", "C11514T", "C14322T", "C19560T", "C21762T", "G25606T", "T28048G"], "S": ["A67V"]}, "labels": {"aa": "S: A67V"}}}, {"name": "NODE_0001474", "node_attrs": {"div": 32, "num_date": {"value": 2021.0888329291752, "confidence": [2020.9782184378512, 2021.174064365183]}}, "branch_attrs": {"mutations": {"nuc": ["C5944T", "G28884C"]}}, "children": [{"name": "OU110729", "node_attrs": {"div": 35, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_y": {"value": 20.85398882201897}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Thuringia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.10020264367053}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.323691538677362}, "tsne_x": {"value": -16.244732137037076}, "mds3": {"value": 24.52893750675508}, "umap_x": {"value": -2.4542005}, "pca2": {"value": 19.02639364505546}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.199324918870104}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.9350338}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G3728A", "C10156T", "-21765T", "-21766A", "-21767T", "T25815C"], "S": ["X68I", "-69X"]}, "labels": {"aa": "S: X68I, -69X"}}}, {"name": "NODE_0001738", "node_attrs": {"div": 32, "num_date": {"value": 2021.1245019086903, "confidence": [2020.9828141653861, 2021.2356843148286]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0359/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.2917808219179, "confidence": [2021.2917808219179, 2021.2917808219179]}, "tsne_y": {"value": 20.702810468837008}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.53528336626768}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 9.718190002394412}, "tsne_x": {"value": -16.349586802636072}, "mds3": {"value": 23.160900841558384}, "umap_x": {"value": -2.6543465}, "pca2": {"value": 1.52708364599277}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -19.773643918162083}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.7585998}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C884T", "C1670T", "A8976G", "C21590T"]}}}, {"name": "NODE_0001739", "node_attrs": {"div": 32, "num_date": {"value": 2021.1349108442428, "confidence": [2020.9927222248325, 2021.2513266517633]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU157270", "node_attrs": {"div": 39, "num_date": {"value": 2021.3246575342466, "confidence": [2021.3246575342466, 2021.3246575342466]}, "tsne_y": {"value": 20.007017426152288}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.594812564087448}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.847879340029256}, "tsne_x": {"value": -16.13717590491939}, "mds3": {"value": 28.65690770035525}, "umap_x": {"value": -2.172592}, "pca2": {"value": -5.93457678259447}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -21.27073443097744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.651012}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1513T", "T9247A", "C12469T", "C19862T", "C23506T", "G25186T", "T27384C"], "S": ["Q1208H"]}, "labels": {"aa": "S: Q1208H"}}}, {"name": "NODE_0001740", "node_attrs": {"div": 32, "num_date": {"value": 2021.1893091948732, "confidence": [2020.989804926126, 2021.2715425607896]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU475712", "node_attrs": {"div": 37, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_y": {"value": 20.3574222242422}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Slovakia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.17972543805207}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 2.722180207307569}, "tsne_x": {"value": -16.28723351429758}, "mds3": {"value": 26.96343167468951}, "umap_x": {"value": -2.3639226}, "pca2": {"value": -10.69274150055596}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -22.732494190027843}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.343263}, "country": {"value": "Slovakia"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G1821A", "C2263T", "C6285T", "C8334T", "G14712A", "-21765T", "-21766A", "-21769T", "-21770G"], "S": ["X68I", "-69X", "X70V"]}, "labels": {"aa": "S: X68I, -69X, X70V"}}}, {"name": "MNG/10011429/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5931506849315, "confidence": [2021.5931506849315, 2021.5931506849315]}, "tsne_y": {"value": 20.00631860769104}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Mongolia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 28.85249465726683}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -7.569588085932578}, "tsne_x": {"value": -16.19534411172292}, "mds3": {"value": 28.35210233872021}, "umap_x": {"value": -2.1600397}, "pca2": {"value": -13.015460055755918}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.126671152785008}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.6666117}, "country": {"value": "Mongolia"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T3049A", "C3821A", "A16458G", "G22021T", "A22025G", "G25599T", "C29545T"], "S": ["M153I", "S155G"]}, "labels": {"aa": "S: M153I, S155G"}}}]}]}]}]}]}, {"name": "NODE_0001741", "node_attrs": {"div": 30, "num_date": {"value": 2020.970518406655, "confidence": [2020.7932183139167, 2021.02083003812]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21CV0111/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.0369863013698, "confidence": [2021.0369863013698, 2021.0369863013698]}, "tsne_y": {"value": 21.57454632280218}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Auckland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.74046546091717}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -0.7142026207396507}, "tsne_x": {"value": -16.329130905038383}, "mds3": {"value": 24.925109576317308}, "umap_x": {"value": -2.8838596}, "pca2": {"value": 2.869358031286385}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.11852755470494}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.934502}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["T16170C", "T21980-", "T21981-", "T21982-", "A29209T"], "S": ["F140-"]}, "labels": {"aa": "S: F140-"}}}, {"name": "NODE_0001742", "node_attrs": {"div": 30, "num_date": {"value": 2020.9900428604421, "confidence": [2020.7660378480568, 2021.1128625461483]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001743", "node_attrs": {"div": 30, "num_date": {"value": 2021.0089353897927, "confidence": [2020.7728450755608, 2021.1244619497008]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001469", "node_attrs": {"div": 32, "num_date": {"value": 2021.0897377833548, "confidence": [2020.9992441828454, 2021.1477602514194]}}, "branch_attrs": {"mutations": {"nuc": ["C337T", "A11830G"]}}, "children": [{"name": "KEN/SS2944/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.1520547945206, "confidence": [2021.1520547945206, 2021.1520547945206]}, "tsne_y": {"value": 21.151070593314568}, "pca_label_for_Nextstrain_clade": {"value": "-1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "-1"}, "mds1": {"value": 21.95565284013927}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 42.272719148123926}, "tsne_x": {"value": -16.31942657881534}, "mds3": {"value": 24.424604848916783}, "umap_x": {"value": -2.7482715}, "pca2": {"value": 22.096737960691154}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.36556152398024}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5577977}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G27990T", "G28134A", "C28139T"]}}}, {"name": "NODE_0001668", "node_attrs": {"div": 32, "num_date": {"value": 2021.1242314111107, "confidence": [2021.0008756265013, 2021.1841377242156]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "KEN/C93195/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.2972602739726, "confidence": [2021.2972602739726, 2021.2972602739726]}, "tsne_y": {"value": 21.16821245512104}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.122010453470555}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 15.792276699585324}, "tsne_x": {"value": -16.463704142561}, "mds3": {"value": 22.392261111462453}, "umap_x": {"value": -2.4776323}, "pca2": {"value": 4.04166859190362}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.231620730016385}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5743}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C8752T", "C9360T", "T26298C"]}}}, {"name": "NODE_0001471", "node_attrs": {"div": 33, "num_date": {"value": 2021.1872547207763, "confidence": [2021.073420242124, 2021.2375643041557]}}, "branch_attrs": {"mutations": {"nuc": ["G23311T"], "S": ["E583D"]}, "labels": {"aa": "S: E583D"}}, "children": [{"name": "KEN/SS375/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.286301369863, "confidence": [2021.286301369863, 2021.286301369863]}, "tsne_y": {"value": 20.51253128076016}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.67152249272129}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -1.6562066364125028}, "tsne_x": {"value": -16.523167601504593}, "mds3": {"value": 29.534569839802}, "umap_x": {"value": -2.2839708}, "pca2": {"value": 1.6494280560600183}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.639702834857625}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.474722}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A298G", "G11029T", "A13036T", "G24095T", "C25046A"], "S": ["A845S", "P1162T"]}, "labels": {"aa": "S: A845S, P1162T"}}}, {"name": "KEN/SS7090/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2698630136986, "confidence": [2021.2698630136986, 2021.2698630136986]}, "tsne_y": {"value": 21.44190037309449}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 23.75769861330996}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 1.907743727449967}, "tsne_x": {"value": -16.338609881951577}, "mds3": {"value": 22.8986830206422}, "umap_x": {"value": -2.7670782}, "pca2": {"value": 5.09810567611925}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.993588887313068}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.215154}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}]}]}, {"name": "NODE_0001486", "node_attrs": {"div": 31, "num_date": {"value": 2021.0674947363043, "confidence": [2020.9343362543032, 2021.1678062494987]}}, "branch_attrs": {"mutations": {"nuc": ["C7299T"]}}, "children": [{"name": "NODE_0001487", "node_attrs": {"div": 32, "num_date": {"value": 2021.2472950165984, "confidence": [2021.142972201511, 2021.2479452054795]}}, "branch_attrs": {"mutations": {"nuc": ["C11750T"]}}, "children": [{"name": "EGY/EGY-ARMY-MCL-UK-Strain001/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.2479452054795, "confidence": [2021.2479452054795, 2021.2479452054795]}, "tsne_y": {"value": 21.62863958094106}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Egypt"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.25812100481656}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -7.735804666972209}, "tsne_x": {"value": -16.3132180356702}, "mds3": {"value": 24.27434985864769}, "umap_x": {"value": -2.8283718}, "pca2": {"value": -13.588458939443976}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.045597224935314}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.1039915}, "country": {"value": "Egypt"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "USA/MN-UMGC-2356/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.3383561643836, "confidence": [2021.3383561643836, 2021.3383561643836]}, "tsne_y": {"value": 21.433612333405453}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Minnesota"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.569956228775727}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.506171544282459}, "tsne_x": {"value": -16.380973972245634}, "mds3": {"value": 25.99181746673208}, "umap_x": {"value": -2.5133123}, "pca2": {"value": 0.5234673253278714}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.481727644849071}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.7959235}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G25489T", "G28913A"]}}}]}, {"name": "NODE_0001488", "node_attrs": {"div": 33, "num_date": {"value": 2021.1311540874242, "confidence": [2021.042228525062, 2021.192519923656]}}, "branch_attrs": {"mutations": {"nuc": ["A28877T", "G28878C"]}}, "children": [{"name": "NZL/21MV0403/2021", "node_attrs": {"div": 35, "num_date": {"value": 2021.335616438356, "confidence": [2021.335616438356, 2021.335616438356]}, "tsne_y": {"value": 21.19954640215262}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.42656268929275}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.49717661585392}, "tsne_x": {"value": -16.667069374176474}, "mds3": {"value": 30.12542800711692}, "umap_x": {"value": -2.6730604}, "pca2": {"value": 0.5249552991526008}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.222404280360395}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.621544}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2445T", "C3634T"]}}}, {"name": "NODE_0001489", "node_attrs": {"div": 37, "num_date": {"value": 2021.2095890410958, "confidence": [2021.1846253454687, 2021.2095890410958]}}, "branch_attrs": {"mutations": {"nuc": ["C2469T", "C14184T", "C29722T", "C29870A"]}}, "children": [{"name": "USA/TX-CDC-QDX23916681/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2780821917809, "confidence": [2021.2780821917809, 2021.2780821917809]}, "tsne_y": {"value": 21.05529873210685}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Texas"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.56762302577805}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.4991875337455323}, "tsne_x": {"value": -16.97027172114114}, "mds3": {"value": 32.29543812377502}, "umap_x": {"value": -2.4425938}, "pca2": {"value": 0.5399889555234483}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -13.1534436917605}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.179332}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C25584T"]}}}, {"name": "USA/CA-CDPH-3000047778/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.2095890410958, "confidence": [2021.2095890410958, 2021.2095890410958]}, "tsne_y": {"value": 21.10048833552722}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "USA"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 17.61767642450294}, "region": {"value": "North America"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.030589217613107}, "tsne_x": {"value": -16.949204959986776}, "mds3": {"value": 31.875367030352265}, "umap_x": {"value": -2.4923546}, "pca2": {"value": -11.009325255979514}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.41120879718397}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.074998}, "country": {"value": "USA"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["-11288A", "-11291A", "-11292G", "-11293T", "-11294T", "-11295T", "-11296G", "-21765T", "-21766C", "-21769T", "-21770A", "-21992T", "-21993A", "-21994C", "-28271A"], "S": ["X68I", "-69X", "X70I", "-144Y"]}, "labels": {"aa": "S: X68I, -69X, X70I, -144Y"}}}]}]}]}]}, {"name": "NODE_0001750", "node_attrs": {"div": 30, "num_date": {"value": 2021.0094470344586, "confidence": [2020.7699879075778, 2021.1193035768965]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001473", "node_attrs": {"div": 31, "num_date": {"value": 2021.1068967650176, "confidence": [2020.8670490342631, 2021.190582448637]}}, "branch_attrs": {"mutations": {"nuc": ["A10323G"]}}, "children": [{"name": "Denmark/DCGC-122134/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.4753424657533, "confidence": [2021.4753424657533, 2021.4753424657533]}, "tsne_y": {"value": 21.07548151746722}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Midtjylland"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.98392687606858}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.440505453570005}, "tsne_x": {"value": -15.19489924444785}, "mds3": {"value": 32.66727842380481}, "umap_x": {"value": -2.472847}, "pca2": {"value": -3.1860061683745595}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.116941616253158}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.2405534}, "country": {"value": "Denmark"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2306T", "C2453T", "T18224C", "C26873T", "G28195T", "C28308T"]}}}, {"name": "OU160563", "node_attrs": {"div": 38, "num_date": {"value": 2021.335616438356, "confidence": [2021.335616438356, 2021.335616438356]}, "tsne_y": {"value": 20.328591861795672}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.720174405814586}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -6.1403209166276405}, "tsne_x": {"value": -15.7470282154378}, "mds3": {"value": 26.21554146282111}, "umap_x": {"value": -2.1863549}, "pca2": {"value": 19.149253476584786}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -21.60317149005744}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.6352983}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C1380T", "A1819C", "G4288T", "T7831C", "T22729C", "G27758T", "G28027C"]}}}]}, {"name": "NODE_0001752", "node_attrs": {"div": 30, "num_date": {"value": 2021.0308232112704, "confidence": [2020.774503050671, 2021.1187812569106]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001753", "node_attrs": {"div": 30, "num_date": {"value": 2021.0500518910924, "confidence": [2020.774585366765, 2021.121633190068]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "IND/GBRC592b/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.1356164383562, "confidence": [2021.1356164383562, 2021.1356164383562]}, "tsne_y": {"value": 21.55180352433681}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 21.79178494117175}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.180984361534458}, "tsne_x": {"value": -16.312715909981755}, "mds3": {"value": 24.479882742876683}, "umap_x": {"value": -2.835479}, "pca2": {"value": -2.9465435047824027}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.53597438989252}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.0354207}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G1805A", "T14408C", "C24914T"], "S": ["H1118Y"]}, "labels": {"aa": "S: H1118Y"}}}, {"name": "NODE_0001754", "node_attrs": {"div": 30, "num_date": {"value": 2021.0684885381352, "confidence": [2020.7752410759192, 2021.1548736746445]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001755", "node_attrs": {"div": 30, "num_date": {"value": 2021.088715742318, "confidence": [2020.77487232826, 2021.1588358214744]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0400/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.3328767123287, "confidence": [2021.3328767123287, 2021.3328767123287]}, "tsne_y": {"value": 20.721527592803383}, "pca_label_for_Nextstrain_clade": {"value": "0"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "0"}, "mds1": {"value": 31.68866839237253}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 55.51138889134193}, "tsne_x": {"value": -14.97043081330856}, "mds3": {"value": 23.027323703134947}, "umap_x": {"value": -2.3258471}, "pca2": {"value": 1.0989913095630248}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -9.973808497248788}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.9016511}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G1820A", "C8293T", "C8626T", "A17856G", "T20573C", "T21861C", "C23657A", "C25047T", "G28904-", "C28905-", "T28906-", "G28907-", "G28908-", "C28909-", "A28910-", "A28911-", "T28912-"], "S": ["I100T", "L699I", "P1162L"]}, "labels": {"aa": "S: I100T, L699I, P1162L"}}}, {"name": "NZL/21MV0290/2021", "node_attrs": {"div": 38, "num_date": {"value": 2021.2589041095891, "confidence": [2021.2589041095891, 2021.2589041095891]}, "tsne_y": {"value": 20.33232192169488}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.481591257321483}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.506783706814549}, "tsne_x": {"value": -16.515037217513722}, "mds3": {"value": 29.56339340054088}, "umap_x": {"value": -2.363435}, "pca2": {"value": 0.527141371939868}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -22.504545550407048}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.3612947}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A4364C", "C4927T", "A5041G", "T9853C", "C10645T", "C15738T", "G17058T", "T22321G"], "S": ["D253E"]}, "labels": {"aa": "S: D253E"}}}]}, {"name": "NODE_0001756", "node_attrs": {"div": 30, "num_date": {"value": 2021.1102381805258, "confidence": [2020.7420980305276, 2021.1913830100018]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "OU132469", "node_attrs": {"div": 33, "num_date": {"value": 2021.2890410958903, "confidence": [2021.2890410958903, 2021.2890410958903]}, "tsne_y": {"value": 21.538526452092867}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "North Rhine Westphalia"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.06423159660334}, "region": {"value": "Europe"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.555396332830075}, "tsne_x": {"value": -16.302719998112654}, "mds3": {"value": 25.376356768909886}, "umap_x": {"value": -2.8640752}, "pca2": {"value": -7.877623772095787}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.610009653447868}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.2433934}, "country": {"value": "Germany"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C3666T", "C8818T", "G26727T"]}}}, {"name": "NODE_0001467", "node_attrs": {"div": 33, "num_date": {"value": 2021.2808219178082, "confidence": [2021.237054829796, 2021.2808219178082]}}, "branch_attrs": {"mutations": {"nuc": ["C17934T", "C19164T", "C25096T"]}}, "children": [{"name": "NZL/21MV0389/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.3027397260273, "confidence": [2021.3027397260273, 2021.3027397260273]}, "tsne_y": {"value": 21.565882027703225}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.865868981733147}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.507227728130274}, "tsne_x": {"value": -16.31810567051569}, "mds3": {"value": 25.28809651047174}, "umap_x": {"value": -2.869472}, "pca2": {"value": 0.524305549589266}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -15.30186829158754}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.305607}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21MV0350/2021", "node_attrs": {"div": 33, "num_date": {"value": 2021.2808219178082, "confidence": [2021.2808219178082, 2021.2808219178082]}, "tsne_y": {"value": 21.555068740180708}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 24.66481107970029}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -5.463576259240085}, "tsne_x": {"value": -16.31952429084103}, "mds3": {"value": 26.017689745247047}, "umap_x": {"value": -2.5461485}, "pca2": {"value": 12.13397871238122}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.47752995516311}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.5948489}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}]}]}]}, {"name": "NODE_0001758", "node_attrs": {"div": 30, "num_date": {"value": 2021.04835338764, "confidence": [2020.7748959923704, 2021.1206935272733]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001759", "node_attrs": {"div": 30, "num_date": {"value": 2021.0677494097142, "confidence": [2020.775091184419, 2021.1228873026082]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NZL/21MV0137/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.1602739726027, "confidence": [2021.1602739726027, 2021.1602739726027]}, "tsne_y": {"value": 21.62188928889044}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.19381525624782}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.503900774194608}, "tsne_x": {"value": -16.314732148498006}, "mds3": {"value": 24.99601833908208}, "umap_x": {"value": -2.8249643}, "pca2": {"value": 0.5354966889937294}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.709110980673838}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.691991}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G24390A", "G28077T"], "S": ["S943N"]}, "labels": {"aa": "S: S943N"}}}, {"name": "IND/GBRC595/2021", "node_attrs": {"div": 34, "num_date": {"value": 2021.1383561643836, "confidence": [2021.1383561643836, 2021.1383561643836]}, "tsne_y": {"value": 21.3279618517985}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "India"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.610393954815905}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.18533977794207}, "tsne_x": {"value": -16.180481034130285}, "mds3": {"value": 26.69831404993431}, "umap_x": {"value": -2.803208}, "pca2": {"value": -2.848875630293654}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.959568470134883}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -3.160376}, "country": {"value": "India"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C5144T", "C20235T", "G29764C", "G29766C"]}}}]}, {"name": "NODE_0001455", "node_attrs": {"div": 31, "num_date": {"value": 2021.1075872150157, "confidence": [2020.995463431397, 2021.1608535198125]}}, "branch_attrs": {"mutations": {"nuc": ["C24109T"]}}, "children": [{"name": "KEN/SS3046/2021", "node_attrs": {"div": 32, "num_date": {"value": 2021.168493150685, "confidence": [2021.168493150685, 2021.168493150685]}, "tsne_y": {"value": 21.54707146635665}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kenya"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 18.30437132114796}, "region": {"value": "Africa"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 4.470890330339591}, "tsne_x": {"value": -16.37691451846212}, "mds3": {"value": 23.850209838952253}, "umap_x": {"value": -2.8520079}, "pca2": {"value": 2.44393639193367}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -14.608194551775464}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -2.6297405}, "country": {"value": "Kenya"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C2070T"]}}}, {"name": "NODE_0001761", "node_attrs": {"div": 31, "num_date": {"value": 2021.1302790187656, "confidence": [2020.9949667323358, 2021.1804629841104]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001457", "node_attrs": {"div": 40, "num_date": {"value": 2021.4169572629512, "confidence": [2021.3721392027378, 2021.4178082191781]}}, "branch_attrs": {"mutations": {"nuc": ["G5374A", "C7162T", "C16323T", "C20736T", "T22016A", "C25427T", "A26319G", "C27503T", "G28739T"], "S": ["W152R"]}, "labels": {"aa": "S: W152R"}}, "children": [{"name": "NZL/21CH0042/2021", "node_attrs": {"div": 42, "num_date": {"value": 2021.4506849315069, "confidence": [2021.4506849315069, 2021.4506849315069]}, "tsne_y": {"value": 19.80419579029001}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.74218167375347}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.504048976526013}, "tsne_x": {"value": -17.405316660023566}, "mds3": {"value": 33.792683334330704}, "umap_x": {"value": -2.1478653}, "pca2": {"value": 0.5255118423551407}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -20.98712734296227}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.6787977}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C10776T", "-21994T", "T28977C"], "S": ["-144X"]}, "labels": {"aa": "S: -144X"}}}, {"name": "NZL/21CH0034/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4315068493152, "confidence": [2021.4315068493152, 2021.4315068493152]}, "tsne_y": {"value": 19.863289689520062}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.886336706283203}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.507987299561795}, "tsne_x": {"value": -17.36889579101495}, "mds3": {"value": 32.08394882007327}, "umap_x": {"value": -2.171243}, "pca2": {"value": 0.5245875779659938}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -22.366401410853555}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.655754}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "NZL/21CH0033/2021", "node_attrs": {"div": 40, "num_date": {"value": 2021.4178082191781, "confidence": [2021.4178082191781, 2021.4178082191781]}, "tsne_y": {"value": 19.86361351338105}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "New Zealand"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.257135186252064}, "region": {"value": "Oceania"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.507987299561795}, "tsne_x": {"value": -17.368962978735013}, "mds3": {"value": 30.971776275465608}, "umap_x": {"value": -2.1410215}, "pca2": {"value": 0.5245875779659938}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -21.9025673560265}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.679089}, "country": {"value": "New Zealand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001459", "node_attrs": {"div": 34, "num_date": {"value": 2021.241475966772, "confidence": [2021.1510811040325, 2021.3155228327516]}}, "branch_attrs": {"mutations": {"nuc": ["C1825T", "C17862T", "C29585T"]}}, "children": [{"name": "Canislupusfamiliaris/THA/CU27042N/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.3383561643836, "confidence": [2021.3383561643836, 2021.3383561643836]}, "tsne_y": {"value": 20.785149120473942}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 22.96716650930196}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -3.846269245776116}, "tsne_x": {"value": -17.184059068665512}, "mds3": {"value": 29.995956446610567}, "umap_x": {"value": -2.4462883}, "pca2": {"value": -1.1869032284958545}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -16.615646831511484}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.1799703}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C6078T", "C6990T", "-28271A"]}}}, {"name": "NODE_0001460", "node_attrs": {"div": 35, "num_date": {"value": 2021.2858134267947, "confidence": [2021.2163368988247, 2021.3642170179883]}}, "branch_attrs": {"mutations": {"nuc": ["G26152T"]}}, "children": [{"name": "THA/CONI-0723/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.3821917808218, "confidence": [2021.3821917808218, 2021.3821917808218]}, "tsne_y": {"value": 20.634430837283126}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Bangkok"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 19.717821577500832}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": 6.926396592908824}, "tsne_x": {"value": -17.482597667871023}, "mds3": {"value": 31.725014413709527}, "umap_x": {"value": -2.3105888}, "pca2": {"value": -6.855195256107293}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -22.15481621663357}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.4486504}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["G20464A", "A22215G", "G27084T", "G27505T"], "S": ["Q218R"]}, "labels": {"aa": "S: Q218R"}}}, {"name": "NODE_0001765", "node_attrs": {"div": 35, "num_date": {"value": 2021.3294478472312, "confidence": [2021.283655555553, 2021.3849315068494]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/CONI-0803/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.3849315068494, "confidence": [2021.3849315068494, 2021.3849315068494]}, "tsne_y": {"value": 20.77783255177827}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Songkhla"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 25.92486013666109}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -2.2384700889560984}, "tsne_x": {"value": -17.218557534369154}, "mds3": {"value": 27.01941741654172}, "umap_x": {"value": -2.435455}, "pca2": {"value": -1.8939513694626788}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.478663967732924}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.1860166}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C21952T"]}}}, {"name": "NODE_0001766", "node_attrs": {"div": 35, "num_date": {"value": 2021.363535545068, "confidence": [2021.2850864664938, 2021.4393100800055]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0001461", "node_attrs": {"div": 36, "num_date": {"value": 2021.4397260273972, "confidence": [2021.398145244867, 2021.4397260273972]}}, "branch_attrs": {"mutations": {"nuc": ["C10340T"]}}, "children": [{"name": "THA/AFRIMS-COV0804/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4534246575342, "confidence": [2021.4534246575342, 2021.4534246575342]}, "tsne_y": {"value": 20.783122261497084}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kamphaeng Phet"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 20.91266588034704}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.974812971627039}, "tsne_x": {"value": -17.210844396887428}, "mds3": {"value": 28.013316513095923}, "umap_x": {"value": -2.5862272}, "pca2": {"value": -6.290032361282886}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -19.32265599625815}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.001386}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}, {"name": "THA/AFRIMS-COV0609/2021", "node_attrs": {"div": 36, "num_date": {"value": 2021.4397260273972, "confidence": [2021.4397260273972, 2021.4397260273972]}, "tsne_y": {"value": 20.77829881849883}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kamphaeng Phet"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 26.33252780948336}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.902579719395878}, "tsne_x": {"value": -17.218333978845813}, "mds3": {"value": 27.064514893273248}, "umap_x": {"value": -2.3242865}, "pca2": {"value": -6.109556911141019}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.89271241662878}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.316718}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {}}}]}, {"name": "NODE_0001768", "node_attrs": {"div": 35, "num_date": {"value": 2021.394658413339, "confidence": [2021.2847926359243, 2021.464648111334]}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "THA/CONI-1248/2021", "node_attrs": {"div": 39, "num_date": {"value": 2021.5383561643835, "confidence": [2021.5383561643835, 2021.5383561643835]}, "tsne_y": {"value": 20.62725474544964}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Tak"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 29.04725776787277}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -1.984477042790031}, "tsne_x": {"value": -17.469938761576714}, "mds3": {"value": 30.11790042270934}, "umap_x": {"value": -2.1204083}, "pca2": {"value": 15.729941103724924}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -18.01321976444208}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.710423}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["C683T", "C10714T", "T20600C", "C25658T"]}}}, {"name": "THA/AFRIMS-COV2543/2021", "node_attrs": {"div": 37, "num_date": {"value": 2021.5438356164384, "confidence": [2021.5438356164384, 2021.5438356164384]}, "tsne_y": {"value": 20.71206293990729}, "pca_label_for_Nextstrain_clade": {"value": "1"}, "Nextclade_pango": {"value": "B.1.1.7"}, "t-sne_label_for_Nextclade_pango_collapsed": {"value": "3"}, "division": {"value": "Kamphaeng Phet"}, "umap_label_for_Nextstrain_clade": {"value": "3"}, "Nextclade_pango_collapsed": {"value": "B.1.1.7"}, "pca_label_for_Nextclade_pango_collapsed": {"value": "1"}, "mds1": {"value": 27.92433283900485}, "region": {"value": "Asia"}, "mds_label_for_Nextclade_pango_collapsed": {"value": "4"}, "pca1": {"value": -4.429075875796409}, "tsne_x": {"value": -17.325443237006898}, "mds3": {"value": 27.9703223984273}, "umap_x": {"value": -2.208127}, "pca2": {"value": -4.600206786081095}, "Nextstrain_clade": {"value": "20I (Alpha, V1)"}, "t-sne_label_for_Nextstrain_clade": {"value": "2"}, "mds2": {"value": -17.9503859556544}, "umap_label_for_Nextclade_pango_collapsed": {"value": "3"}, "umap_y": {"value": -4.589435}, "country": {"value": "Thailand"}, "mds_label_for_Nextstrain_clade": {"value": "4"}}, "branch_attrs": {"mutations": {"nuc": ["A1804G", "G5023T"]}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}}
\ No newline at end of file