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failed_runs_with_logs.json
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failed_runs_with_logs.json
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[
[
"7a76cb443c0b90ead6ba6cce85999a3b",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"23fa1b7c8cc16528afab3a67c047c038",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"e803dbe78f5b9f9227ed3fd3294ad8a1",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (cannot find variable PVA named in ci element.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with name equations.\n In Model element with cmeta:id yasumura_1988 with name yasumura_1988).",
"type": "CombineArchiveExecutionError"
}
],
[
"4b810355426284ca572a0731b4e29752",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"632a7aad8db50bce5adf03529cab93c2",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"5f5e46fb3a5d3c2e85c81bef880f91d1",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (invalid units cells_per_mm3_per_day on variable.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id phi_I with name phi_I.\n In Model element with cmeta:id waugh_model_2006 with name waugh_model_2006).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (invalid units cells_per_mm3_per_day on variable.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id phi_I with name phi_I.\n In Model element with cmeta:id waugh_model_2006 with name waugh_model_2006).",
"type": "CombineArchiveExecutionError"
}
],
[
"c13ef6995c303b1094021fe8fd988d1e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"65",
{
"message": "COMBINE/OMEX archive '/in/65/65.omex' does not contain any executing SED-ML files",
"type": "NoSedmlError"
}
],
[
"160d30396c87eba60eabfe8882f429b2",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id ATP with name ATP.\n In Model element with cmeta:id vendelin_model_2000 with name vendelin_model_2000).",
"type": "CombineArchiveExecutionError"
}
],
[
"80",
{
"message": "`/in/80/80.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `Lorenz_1963_sedml.xml` is invalid.\n - Data generator `t` is invalid.\n - Variable `variable_t` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='t']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `x` is invalid.\n - Variable `variable_x` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='x']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `y` is invalid.\n - Variable `variable_y` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='y']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `z` is invalid.\n - Variable `variable_z` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='z']` are not defined. Only the following namespaces are defined for the target: `math`.",
"type": "ValueError"
}
],
[
"cf9c7e891dcefb3cc34b98588b6a3fd4",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element with ID membrane_voltage_partialdiff_eq.\n In MathML math element.\n In CellMLComponent element with name membrane.\n In Model element with cmeta:id surkis_peskin_tranchina_leonard_1998_version01 with name surkis_peskin_tranchina_leonard_1998_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"e8ee336095b8955f75a3e6c09b791d42",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable I_LCC in component CaRU has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"4f1",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n yVariable1_1: /cellml:model/cellml:component[@name='active_contraction']/cellml:variable[@name='T']",
"type": "CombineArchiveExecutionError"
}
],
[
"fca2b9879f1ec2c4389160ecdc9bb1f9",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"f2c0c0fd4454565406b48a6d8a876b59",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"52e2a146e8bf5976379803fec46138a7",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable localVolume in component Template_ProteinCDS has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable concentration in component Template_RxR1P1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable RNA in component Template_RBS has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable reactant1 in component Template_RxR2P1Rev has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable reactant in component Template_RxR1P1MM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component Template_Species has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable localVolume in component Template_Promoter_Constitutive has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable reactant1 in component Template_RxR2P1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable localVolume in component Template_Promoter_Inductive has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"367dd974d6fcbf0543aa1491bef05540",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element with ID c_partialdiff_eq.\n In MathML math element.\n In CellMLComponent element with name calcium.\n In Model element with cmeta:id sneyd_2003 with name sneyd_2003).",
"type": "CombineArchiveExecutionError"
}
],
[
"26",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator sum; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with name S1.\n In Model element with cmeta:id smith_2007_synaptic_coupling with name smith_2007_synaptic_coupling).",
"type": "CombineArchiveExecutionError"
}
],
[
"5b32fa74389675830d00f4a4f27ab944",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: the system function failed at the first call",
"type": "CombineArchiveExecutionError"
}
],
[
"734cbb5f0b763d097610b924f081f9e1",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"33",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"a195d957a2d63ac4defe3232fd0ea50c",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Pi in component LeftHeart has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDv has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDa has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Emax in component EAtrium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRLC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"385475ef63ff3f2d42e3dcb52f3982d2",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component TempDPump has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDv has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDa has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Emax in component EAtrium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component LeftHeart has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRLC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"a711196ce7ef060925737fb9e70eb097",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"cc53567cdb9dac2b598017cab8b8ad05",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: the system function failed at the first call",
"type": "CombineArchiveExecutionError"
}
],
[
"656db4a148c701c26e5eaf941a929df2",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"0012d51f4c3c7abf1cde683fd19ccc53",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"5c3ff5fbbfe51da3c2d2a684a4062436",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id TCa with name TCa.\n In Model element with cmeta:id sachse_2003 with name sachse_2003).",
"type": "CombineArchiveExecutionError"
}
],
[
"d8b6b7ced6b110db392bc0e2968a88a9",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"07cdb663179c77de23e425a56464a2aa",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00803579, mxstep steps taken before reaching tout\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00744848, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"4e478093480e0d7e08a2f24177ec4906",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.0116122, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"4dece1858d3eababf6aa425e1084a801",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"817",
{
"message": "`/in/817/817.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `Current_Ina.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.\n - The SED-ML file at location `Current_If.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.\n - The SED-ML file at location `Current_Ikr.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.\n - The SED-ML file at location `Current_Iks.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.\n - The SED-ML file at location `Channels.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.\n - The SED-ML file at location `Current_Ik1.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.\n - The SED-ML file at location `Current_Ica.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.\n - The SED-ML file at location `Current_Ito.sedml` is invalid.\n - Output `plot1` is invalid.\n - Plot must have at least one curve.",
"type": "ValueError"
}
],
[
"5c3",
{
"message": "`/in/5c3/5c3.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `Weinstein_1995_NHE3_Fig3B.sedml` is invalid.\n - Model `model` is invalid.\n - The model file `Weinstein_1995_NHE3_Fig3B.cellml` is invalid.\n - `/tmp/tmpwkieq25o/Weinstein_1995_NHE3_Fig3B.cellml` is not a file.",
"type": "ValueError"
}
],
[
"9c7f8d7b88a8f31e990a3a9256005e6e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.001 and h = 8.73337e-18, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"6e476eaa1f45f0ad607754b3ccd89a1a",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"f6c9c998e7deb7e4a45c8aa71b469f7f",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.336303 and h = 2.70389e-09, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"4f9511d703b55ace4780879b253777d6",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component king_altman_states has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Na_i in component rate_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component parameters has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component eskandari_2005_interface_component has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component phenomonological_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component kinetic_equations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable V_initial in component ion_concentrations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component NBC_current has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable I_NaGl_SS in component Na_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component variables_1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component glucose_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component king_altman_states has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Na_i in component rate_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component parameters has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component phenomonological_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component mackenzie_1996_interface_component has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component kinetic_equations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable V_initial in component ion_concentrations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component NBC_current has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component variables_1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0 and h = 1.3093e-11, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"42",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component king_altman_states has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Na_i in component rate_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component parameters has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component eskandari_2005_interface_component has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component phenomonological_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component kinetic_equations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable V_initial in component ion_concentrations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component NBC_current has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable I_NaGl_SS in component Na_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component variables_1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component glucose_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component king_altman_states has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Na_i in component rate_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component parameters has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component phenomonological_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component mackenzie_1996_interface_component has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component kinetic_equations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable V_initial in component ion_concentrations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component NBC_current has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component variables_1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0 and h = 1.3093e-11, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"22e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component king_altman_states has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Na_i in component rate_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component parameters has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component eskandari_2005_interface_component has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component phenomonological_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component kinetic_equations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable V_initial in component ion_concentrations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component NBC_current has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable I_NaGl_SS in component Na_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component variables_1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component glucose_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"dc0a1bb790d7e2d70974977174a869ec",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00178903, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"e794e94916178875bc8ea12767f78c90",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 7.32673e-09 and h = 5.70736e-25, the corrector convergence test failed repeatedly or with |h| = hmin\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00931379, mxstep steps taken before reaching tout\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00969861, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"2572ee3009e31788d1cbe5b6bca110bc",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id q with name q.\n In Model element with cmeta:id palecek_horwitz_lauffenburger_1999_version02 with name palecek_horwitz_lauffenburger_1999_version02).",
"type": "CombineArchiveExecutionError"
}
],
[
"0e5385680dec6f3999f88c15b5bf7b05",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator sum; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id chi with name chi.\n In Model element with cmeta:id oomens_2003 with name oomens_2003).",
"type": "CombineArchiveExecutionError"
}
],
[
"ea62c9c8a502afe364350d353ebf4dd5",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00777209, mxstep steps taken before reaching tout\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00760512, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"0e5ba410072513e0674e8762d4909927",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"c0d9a5446b06b3495c011b675cfbcb45",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id s1 with name s1.\n In Model element with cmeta:id nevo_2004 with name nevo_2004).",
"type": "CombineArchiveExecutionError"
}
],
[
"2cb",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n xVariable3_1: /cellml:model/cellml:component[@name='concentrations']/cellml:variable[@name='time']\n xVariable1_1: /cellml:model/cellml:component[@name='concentrations']/cellml:variable[@name='time']\n xVariable2_1: /cellml:model/cellml:component[@name='concentrations']/cellml:variable[@name='time']",
"type": "CombineArchiveExecutionError"
}
],
[
"2d0",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (invalid units joule_per_mmole_kelvin on variable.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with name NBC.\n In Model element with cmeta:id Ostby_2009_NBC with name Ostby_2009_NBC.\n In CellMLImport element.\n In Model element with cmeta:id Ostby_2009_NBC with name Ostby_2009_NBC).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (invalid units joule_per_mmole_kelvin on variable.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with name NBC.\n In Model element with cmeta:id Ostby_2009_NBC with name Ostby_2009_NBC.\n In CellMLImport element.\n In Model element with cmeta:id Ostby_2009_NBC with name Ostby_2009_NBC).",
"type": "CombineArchiveExecutionError"
}
],
[
"2e2",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n xVariable1_1: /cellml:model/cellml:component[@name='fluxes']/cellml:variable[@name='Na_ext']\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n xVariable1_1: /cellml:model/cellml:component[@name='fluxes']/cellml:variable[@name='Na_ext']",
"type": "CombineArchiveExecutionError"
}
],
[
"7f056cfd284daf3b3bbaf2ae23b0ff5e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element with ID J11_calculation.\n In MathML math element.\n In CellMLComponent element with name calcium_current.\n In Model element with cmeta:id mosekilde_lading_yanchuk_maistrenko_2001_version01 with name mosekilde_lading_yanchuk_maistrenko_2001_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"d7913d744f6b64a6ea68b30a4bccaa10",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"62d7398a8a730bf27d19a602109b3e2d",
{
"message": "COMBINE/OMEX archive '/in/62d7398a8a730bf27d19a602109b3e2d/62d7398a8a730bf27d19a602109b3e2d.omex' does not contain any executing SED-ML files",
"type": "NoSedmlError"
}
],
[
"7c8d69c91d28c4e6a77d987360ebad13",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (variable has units micromolar which are incompatible with the units dimensionless on a connected variable.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id C3 with name C3.\n In Model element with cmeta:id mazhari_model_2001_version02 with name mazhari_greenstein_winslow_marban_nuss_2001_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"2a5",
{
"message": "`/in/2a5/2a5.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `experiments/figure-03-sedml.xml` is invalid.\n - The elements of the document have references that could not be resolved.\n - TaskReference from Variable `V` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Khalf_gluc1` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Khalf_gluc2` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Khalf_Na3` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Khalf_Na4` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Khalf_Na5` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Imax_gluc1` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Imax_gluc2` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Imax_Na3` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Imax_Na4` cannot be resolved to a task with id `task`.\n - TaskReference from Variable `Imax_Na5` cannot be resolved to a task with id `task`.",
"type": "ValueError"
}
],
[
"d2ae260f34fea156204014df4f1b59b0",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element with ID P_partialdiff_eq.\n In MathML math element.\n In CellMLComponent element with name IP3.\n In Model element with cmeta:id mckenzie_1998_version01 with name mckenzie_1998_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"b9",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.077636, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"2293d197c76ac4c8d0c29e8831c9a327",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"bc9af87f2f7a6a301db7887acf8f15da",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id L with name L.\n In Model element with cmeta:id maly_wiley_lauffenburger_2004_version01 with name maly_wiley_lauffenburger_2004_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"bbd802c6a6d6e69b746244f83b4fb89b",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.0534661, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"806",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.0534661, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"59d68aeddccd8b44879215841e289938",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"880c91f65d8a67d08a911659f8a344a7",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"233",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component king_altman_states has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Na_i in component rate_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component parameters has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component phenomonological_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component mackenzie_1996_interface_component has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component kinetic_equations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable V_initial in component ion_concentrations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component NBC_current has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component variables_1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"feccb0f0649425a61526049f35c3b7fb",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Pi in component LeftHeart has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDv has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDa has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Emax in component EAtrium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRLC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempR has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"9970597960dbe3a381d773d90c0298c2",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempR has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDv has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDa has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Emax in component EAtrium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n std::runtime_error: the line search algorithm was unable to find an iterate sufficiently distinct from the current iterate\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"6cf",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable K_4 in component CB4HM has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"5055e8e1a4fb76cc90067d9e0997bb29",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"be7a891ac95b45c9b651f88821b6d2b4",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"8c",
{
"message": "COMBINE/OMEX archive '/in/8c/8c.omex' does not contain any executing SED-ML files",
"type": "NoSedmlError"
}
],
[
"dfe4f6c90d58266f0f5d6d320c291e40",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.0944317, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"f9f508271e84e7c92596a27332ae3421",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (variable has units dimensionless which are incompatible with the units micromolar on a connected variable.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id O with name O.\n In Model element with cmeta:id lebeau_model_1999_version02 with name lebeau_yule_groblewski_sneyd_1999_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"3c1177a5ea3da98a6974aab65d9f9192",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"25487fe28656b5a5d7ced4640dfa39f1",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.0240901, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"3026959916d3e946025ef46ffea627c9",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"16afc3ec28ce71ddd761baab2ae7e8bd",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (variable has units micromolar which are incompatible with the units dimensionless on a connected variable.; \n In MathML apply element.\n In MathML math element.\n In CellMLComponent element with cmeta:id P_C1 with name P_C1.\n In Model element with cmeta:id keizer_model_1996 with name keizer_levine_1996_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"7f1817ef2f2d9365518e25f112a89ed7",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (encountered unsupported operator partialdiff; \n In MathML apply element with ID G_partialdiff_eq.\n In MathML math element.\n In CellMLComponent element with name extracellular_glucose.\n In Model element with cmeta:id keener_2001_version01 with name keener_2001_version01).",
"type": "CombineArchiveExecutionError"
}
],
[
"430",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n yVariable2_1: /cellml:model/cellml:component[@name='sodium_channel_m_gate']/cellml:variable[@name='m']\n yVariable3_1: /cellml:model/cellml:component[@name='sodium_channel_h_gate']/cellml:variable[@name='h']\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n xVariable1_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable4_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable3_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable5_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n yVariable1_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='V']\n xVariable2_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n yVariable2_1: /cellml:model/cellml:component[@name='potassium_channel_n_gate']/cellml:variable[@name='n']\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n xVariable4_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable2_2: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable5_2: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable1_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable6_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable4_2: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable5_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable2_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']\n xVariable3_1: /cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='t']",
"type": "CombineArchiveExecutionError"
}
],
[
"c49d416ae3a5132882e6ea7479ba50f5",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component ModelPul has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRLC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempR has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempRC has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDv has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Po in component TempCDa has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Emax in component EAtrium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"2a3e1e865606c4da94c251017038f820",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.0221062 and h = 9.8285e-09, the error test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"613d3457e5b7f4a23606e4455f99fe35",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"81b442d5d866cde17186144e0d848021",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"672",
{
"message": "`/in/672/672.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `sed-ml/periodic-stimulus.xml` is invalid.\n - Data generator `dgTime` is invalid.\n - Variable `time` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='time']/cellml:variable[@name='time']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgVm` is invalid.\n - Variable `Vm` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='minus_V']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgINa` is invalid.\n - Variable `INa` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='INa']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgIK` is invalid.\n - Variable `IK` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='IK']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgIleak` is invalid.\n - Variable `Ileak` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='Ileak']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgHgate` is invalid.\n - Variable `h` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='h']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgMgate` is invalid.\n - Variable `m` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='m']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgNgate` is invalid.\n - Variable `n` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='n']` are not defined. Only the following namespaces are defined for the target: `math`.",
"type": "ValueError"
}
],
[
"49f298f54f3e916fca650c8e76d82e46",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.185201, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"4ea",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The target of each variable must be a valid observable. The targets of the following variables are not valid observables.\n yVariable2_1: /cellml:model/cellml:component[@name='sodium_channel_h_gate']/cellml:variable[@name='h']\n yVariable2_2: /cellml:model/cellml:component[@name='sodium_channel_m_gate']/cellml:variable[@name='m']",
"type": "CombineArchiveExecutionError"
}
],
[
"3595b88e8ebf1c03abb9a067d2271677",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"2ca",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (invalid units joule_per_mmole on variable.; \n In MathML apply element with ID electrochemical_potential_difference_calculation.\n In MathML math element.\n In CellMLComponent element with name H_ATPase.\n In Model element with cmeta:id Weinstein_2000_HATPase with name Weinstein_2000_HATPase.\n In CellMLImport element.\n In Model element with cmeta:id Weinstein_2000_HATPase with name Weinstein_2000_HATPase).\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (invalid units joule_per_mmole on variable.; \n In MathML apply element with ID electrochemical_potential_difference_calculation.\n In MathML math element.\n In CellMLComponent element with name H_ATPase.\n In Model element with cmeta:id Weinstein_2000_HATPase with name Weinstein_2000_HATPase.\n In CellMLImport element.\n In Model element with cmeta:id Weinstein_2000_HATPase with name Weinstein_2000_HATPase).",
"type": "CombineArchiveExecutionError"
}
],
[
"50",
{
"message": "COMBINE/OMEX archive '/in/50/50.omex' does not contain any executing SED-ML files",
"type": "NoSedmlError"
}
],
[
"3170c283f73b04cbd2916585775e0f6e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"4d",
{
"message": "COMBINE/OMEX archive '/in/4d/4d.omex' does not contain any executing SED-ML files",
"type": "NoSedmlError"
}
],
[
"453f7438e967537919f6defea7e9bacb",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"51",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable ATRRFB in component volume_receptors has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component time_dependent_volume_receptor_adaptation has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"b93f24dcf25fd10062900d530e5c7879",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"64f53aa4552f15dc6805444ba0559c5a",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable VV6 in component stress_relaxation has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component short_term_stress_relaxation has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"4fe557dc8bbacf2755ad3fbea6192311",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"63f124c018745aa8ec92a091434f3dfc",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable OVA in component pulmonary_O2_uptake has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component O2_volume_of_arterial_blood has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"c1461e469a5e282face2fdf37817ca10",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"fa56f587abba02bab53c22386ead9c7e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"be69ef6c1a42264162ae6e370e6107b5",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable ARM in component non_muscle_autoregulatory_local_blood_flow_control has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component NM_ST_time_delay_and_damping has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"434c9a6dcfa8af3d2e1901a0d6a592e5",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable PMO in component muscle_O2_delivery has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component M_venous_O2_content has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"d20c1a1db1b4027605b87b4361e62560",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"4c73baa30cb81cf0cd83b4e8d42a5358",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"129a42eec2026f894ae986eb58ee7eb8",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable ANPX in component atrial_natriuretic_peptide has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component ANP_in_plasma has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"f97a5eb092b12f4f0f32ac51ee20d20e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"a6bd38d1120dfa7c1ac370cba113bb78",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"ea5144be46b69ba503a2d0cd5cbd5b96",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable HPL in component heart_hypertrophy_or_deterioration has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component left_ventricular_hypertrophy has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"827af05888f8e152f448d9cd8c6a8d09",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable PA1 in component autonomics has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component autonomics has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"2f0a348ca8dfa52b30263f58148ba678",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"beb8bf5ac61b639a935af2ed42bf8892",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable AMK in component aldosterone has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component aldosterone_concentration has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"afd5db90de862fb366422bbd5e3f6744",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"166ffbd9c23f0e34fbcda6cb31a57a6c",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"b897ad1b96031d40293b2e2e10684ffe",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable RBF in component kidney has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component perfusion_pressure has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"239e0bdec0c7054e0727fc111a54658c",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable CKE in component electrolytes has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component extracellular_Na_concentration has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"988bef2de04476a20b1e76e9e933b86b",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.382354, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"61bed9f6deb2ce4c57a53aeb1003f41a",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"f966223b398ac1f82af4196286f65e65",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is unsuitably constrained (i.e. some variables could not be found and/or some equations could not be used).",
"type": "CombineArchiveExecutionError"
}
],
[
"2a4",
{
"message": "`/in/2a4/2a4.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `experiments/figure-03-sedml.xml` is invalid.\n - The elements of the document have references that could not be resolved.\n - RangeId from RepeatedTask `repeatedTask` cannot be resolved to a range with id `once`.\n - The SED-ML file at location `experiments/figure-02-sedml.xml` is invalid.\n - The elements of the document have references that could not be resolved.\n - RangeId from RepeatedTask `repeatedTask` cannot be resolved to a range with id `once`.\n - The SED-ML file at location `experiments/figure-04-sedml.xml` is invalid.\n - The elements of the document have references that could not be resolved.\n - RangeId from RepeatedTask `repeatedTask` cannot be resolved to a range with id `once`.",
"type": "ValueError"
}
],
[
"f17a3cade0f0f7986b060b8bbf5c2957",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable I_ion_PU in component pacemaker_unit_model has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable n_PU in component pacemaker_unit_model has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"244aa1ba5149bfd8f28dce7f3591f876",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.188799, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"4f2e566422b61feefb6c517fd6eb521e",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"bb0ee0e6d141a529fa896ff3785f0eff",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"e08bd642df06eb59404c8e46afbb04a4",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.",
"type": "CombineArchiveExecutionError"
}
],
[
"45ddea4fcde109d7a2bef806aeae84d7",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 4.35663e-08, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"5aee9e38e88258d22ef75d0a34cc2c51",
{
"message": "COMBINE/OMEX archive '/in/5aee9e38e88258d22ef75d0a34cc2c51/5aee9e38e88258d22ef75d0a34cc2c51.omex' does not contain any executing SED-ML files",
"type": "NoSedmlError"
}
],
[
"3f4e7364a814a083d68724237c925b35",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"22f",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component king_altman_states has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable Na_i in component rate_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component parameters has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k0_12 in component eskandari_2005_interface_component has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component phenomonological_constants has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component kinetic_equations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable V_initial in component ion_concentrations has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model must have at least one ODE or DAE.\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable k_12 in component NBC_current has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable I_NaGl_SS in component Na_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component variables_1 has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable time in component glucose_i has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"8fa4b47b0cca2e2d03923c2f8dff4b53",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.000140847 and h = 2.06184e-22, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"d3403bf284c70afc807292bc9bdb92ec",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"9ee3b0eefb6b3f1e1cea0e4af39bc207",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"2caa4ffba377d202567ec5e5e8f1cfce",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"9951cee4c75188b03d3f304cfa431036",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcium has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component calcineurin has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable t in component NFAT_Cycling has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"ef739f4fa746419338ff20f1e23287c1",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: the system function failed at the first call",
"type": "CombineArchiveExecutionError"
}
],
[
"7fce899159b8698ccb2c8569d19a0ea1",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0 and h = 1.3093e-11, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"653f1ead0bdc451454ee39b013805a0a",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"1a",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: a problem occurred during the generation of the model code (CellML Variable s in component single_neuron_model has in interfaces, but is not connected (directly or indirectly) to any variable with no in interfaces;).",
"type": "CombineArchiveExecutionError"
}
],
[
"d4d2febdd2a9556eca88ceeac66bf696",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0.00228728, mxstep steps taken before reaching tout",
"type": "CombineArchiveExecutionError"
}
],
[
"a3",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0 and h = 2.19671e-14, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"800",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: the system function failed at the first call\n \n std::runtime_error: the system function failed at the first call",
"type": "CombineArchiveExecutionError"
}
],
[
"7fc",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: the system function failed at the first call\n \n std::runtime_error: the system function failed at the first call",
"type": "CombineArchiveExecutionError"
}
],
[
"52d0106a27d6d2d0b6a5032e9e99ae87",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n The task does not describe a valid simulation:\n \n Error: the model is underconstrained (i.e. some variables need to be initialised or computed).",
"type": "CombineArchiveExecutionError"
}
],
[
"709",
{
"message": "`/in/709/709.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `sed-ml/BR-INa-variants.xml` is invalid.\n - A <document> object must have the required attributes 'sedml:level' and 'sedml:version'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on a <document> object. \n Reference: L3V1 Sedml V1 Section\n Sedml attribute 'level' is missing from the <SedDocument> element.\n \n - A <document> object must have the required attributes 'sedml:level' and 'sedml:version'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on a <document> object. \n Reference: L3V1 Sedml V1 Section\n Sedml attribute 'version' is missing from the <SedDocument> element.\n \n - Invalid namespace declared.\n Reference: L3V1 Sedml V1 Section\n The prefix for the <sedml> element does not match the prefix for the SED-ML namespace. This means that the <sedml> element in not in the SedNamespace.\n \n - A <simulation> object must have the required attribute 'sedml:id', and may have the optional attribute 'sedml:name'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on a <simulation> object. \n Reference: L3V1 Sedml V1 Section\n An unknown attribute has been found.\n Attribute 'algorithm' is not part of the definition of a SED-ML Level 1 Version 3 <uniformTimeCourse> element.\n \n - A <model> object must have the required attributes 'sedml:language' (optional before Level 1 Version 4), 'sedml:id', and 'sedml:source', and may have the optional attribute 'sedml:name'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on a <model> object. \n Reference: L3V1 Sedml V1 Section\n An unknown attribute has been found.\n Attribute 'type' is not part of the definition of a SED-ML Level 1 Version 3 <model> element.\n \n - A <model> object must have the required attributes 'sedml:language' (optional before Level 1 Version 4), 'sedml:id', and 'sedml:source', and may have the optional attribute 'sedml:name'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on a <model> object. \n Reference: L3V1 Sedml V1 Section\n An unknown attribute has been found.\n Attribute 'type' is not part of the definition of a SED-ML Level 1 Version 3 <model> element.\n \n - A <model> object must have the required attributes 'sedml:language' (optional before Level 1 Version 4), 'sedml:id', and 'sedml:source', and may have the optional attribute 'sedml:name'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on a <model> object. \n Reference: L3V1 Sedml V1 Section\n An unknown attribute has been found.\n Attribute 'type' is not part of the definition of a SED-ML Level 1 Version 3 <model> element.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <task> is 'BR-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <task> is 'BREJ-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <task> is 'BRDR-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <dataGenerator> is 'BR-time', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <variable> is 'BR-time', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:taskReference' of a <variable> object must be the identifier of an existing <abstractTask> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The taskReference attribute on the <variable> with id 'BR-time' is 'BR-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <dataGenerator> is 'BR-Vm', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <variable> is 'BR-Vm', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:taskReference' of a <variable> object must be the identifier of an existing <abstractTask> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The taskReference attribute on the <variable> with id 'BR-Vm' is 'BR-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <dataGenerator> is 'BREJ-time', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <variable> is 'BREJ-time', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:taskReference' of a <variable> object must be the identifier of an existing <abstractTask> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The taskReference attribute on the <variable> with id 'BREJ-time' is 'BREJ-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <dataGenerator> is 'BREJ-Vm', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <variable> is 'BREJ-Vm', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:taskReference' of a <variable> object must be the identifier of an existing <abstractTask> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The taskReference attribute on the <variable> with id 'BREJ-Vm' is 'BREJ-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <dataGenerator> is 'BRDR-time', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <variable> is 'BRDR-time', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:taskReference' of a <variable> object must be the identifier of an existing <abstractTask> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The taskReference attribute on the <variable> with id 'BRDR-time' is 'BRDR-task', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <dataGenerator> is 'BRDR-Vm', which does not conform to the syntax.\n \n - The value of a 'sedml:id' must conform to the syntax of the <sbml> data type 'SId'\n Reference: L3V1 Sedml V1 Section\n The id on the <variable> is 'BRDR-Vm', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:taskReference' of a <variable> object must be the identifier of an existing <abstractTask> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The taskReference attribute on the <variable> with id 'BRDR-Vm' is 'BRDR-task', which does not conform to the syntax.\n \n - An <output> object may have the optional attributes 'sedml:id' and 'sedml:name'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on an <output> object. \n Reference: L3V1 Sedml V1 Section\n An unknown attribute has been found.\n Attribute 'logY' is not part of the definition of a SED-ML Level 1 Version 3 <plot2D> element.\n \n - An <output> object may have the optional attributes 'sedml:id' and 'sedml:name'. No other attributes from the SBML Level 3 SED-ML namespaces are permitted on an <output> object. \n Reference: L3V1 Sedml V1 Section\n An unknown attribute has been found.\n Attribute 'logY' is not part of the definition of a SED-ML Level 1 Version 3 <plot2D> element.\n \n - The value of the attribute 'sedml:xDataReference' of an <abstractCurve> object must be the identifier of an existing <dataReference> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The xDataReference attribute on the <curve> is 'BR-time', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:yDataReference' of a <curve> object must be the identifier of an existing <dataGenerator> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The yDataReference attribute on the <curve> is 'BR-Vm', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:xDataReference' of an <abstractCurve> object must be the identifier of an existing <dataReference> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The xDataReference attribute on the <curve> is 'BREJ-time', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:yDataReference' of a <curve> object must be the identifier of an existing <dataGenerator> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The yDataReference attribute on the <curve> is 'BREJ-Vm', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:xDataReference' of an <abstractCurve> object must be the identifier of an existing <dataReference> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The xDataReference attribute on the <curve> is 'BRDR-time', which does not conform to the syntax.\n \n - The value of the attribute 'sedml:yDataReference' of a <curve> object must be the identifier of an existing <dataGenerator> object defined in the enclosing <model> object.\n Reference: L3V1 Sedml V1 Section\n The yDataReference attribute on the <curve> is 'BRDR-Vm', which does not conform to the syntax.\n \n - The SED-ML file at location `sed-ml/BR-INa-variants-standalone.xml` is invalid.\n - Invalid namespace declared.\n Reference: L3V1 Sedml V1 Section\n The prefix for the <sedml> element does not match the prefix for the SED-ML namespace. This means that the <sedml> element in not in the SedNamespace.\n \n - The SED-ML file at location `models/1998_noble/1998_noble.sedml` is invalid.\n - Model `model` is invalid.\n - The model file `1998_noble.xml` is invalid.\n - 511.0: Invalid attribute id for element math\n - 0.0: Extra element math in interleave\n - 511.0: Element component failed to validate content\n - 0.0: Extra element component in interleave\n - 438.0: Element model failed to validate content\n - The SED-ML file at location `models/1998_jafri/model.sedml` is invalid.\n - Model `model` is invalid.\n - The model file `model.xml` is invalid.\n - 470.0: Invalid attribute id for element math\n - 0.0: Extra element math in interleave\n - 470.0: Element component failed to validate content\n - 0.0: Extra element component in interleave\n - 407.0: Element model failed to validate content\n - The SED-ML file at location `models/1985_difrancesco/1985_difrancesco_noble.sedml` is invalid.\n - Model `model` is invalid.\n - The model file `1985_difrancesco_noble.xml` is invalid.\n - 531.0: Invalid attribute id for element math\n - 0.0: Extra element math in interleave\n - 531.0: Element component failed to validate content\n - 0.0: Extra element component in interleave\n - 467.0: Element model failed to validate content\n - The SED-ML file at location `models/1994_luo/model.sedml` is invalid.\n - Model `model` is invalid.\n - The model file `model.xml` is invalid.\n - 360.0: Invalid attribute id for element math\n - 0.0: Extra element math in interleave\n - 360.0: Element component failed to validate content\n - 0.0: Extra element component in interleave\n - 293.0: Element model failed to validate content",
"type": "ValueError"
}
],
[
"24e6c8feac0fa6d452a5955abf16f799",
{
"message": "The COMBINE/OMEX did not execute successfully:\n\n The SED document did not execute successfully:\n \n std::runtime_error: at t = 0 and h = 4.53921e-15, the corrector convergence test failed repeatedly or with |h| = hmin",
"type": "CombineArchiveExecutionError"
}
],
[
"e5",
{
"message": "`/in/e5/e5.omex` is not a valid COMBINE/OMEX archive.\n - The SED-ML file at location `sed-ml/periodic-stimulus.xml` is invalid.\n - Data generator `dgTime` is invalid.\n - Variable `time` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='time']/cellml:variable[@name='time']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgVm` is invalid.\n - Variable `Vm` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='minus_V']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgINa` is invalid.\n - Variable `INa` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='INa']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgIK` is invalid.\n - Variable `IK` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='IK']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgIleak` is invalid.\n - Variable `Ileak` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='Ileak']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgHgate` is invalid.\n - Variable `h` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='h']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgMgate` is invalid.\n - Variable `m` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='m']` are not defined. Only the following namespaces are defined for the target: `math`.\n - Data generator `dgNgate` is invalid.\n - Variable `n` is invalid.\n - One or more namespaces required for target `/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='n']` are not defined. Only the following namespaces are defined for the target: `math`.",
"type": "ValueError"