From 29d5848be7a2b729f8bd4f5e95b25d1b774c8507 Mon Sep 17 00:00:00 2001 From: Vincent Davis Date: Thu, 21 Apr 2016 09:45:59 -0600 Subject: [PATCH 1/2] Fix url for PRANK --- wiki/List_of_applications_executed_via_Biopython.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wiki/List_of_applications_executed_via_Biopython.md b/wiki/List_of_applications_executed_via_Biopython.md index 75dfedbd6..d60a3f300 100644 --- a/wiki/List_of_applications_executed_via_Biopython.md +++ b/wiki/List_of_applications_executed_via_Biopython.md @@ -30,7 +30,7 @@ Bio.Align: - [MSAProbs](http://msaprobs.sourceforge.net/homepage.htm) - [MAFFT](http://mafft.cbrc.jp/alignment/software/) - [MUSCLE](http://www.drive5.com/muscle/) -- [PRANK](http://code.google.com/p/prank-msa/) +- [PRANK](http://wasabiapp.org/software/prank/) - [ProbCons](http://probcons.stanford.edu/) - [T-Coffee](http://www.tcoffee.org/) From 2655881687adcbc67bab01fe7c9e589756b8e2ae Mon Sep 17 00:00:00 2001 From: Vincent Davis Date: Thu, 21 Apr 2016 09:50:31 -0600 Subject: [PATCH 2/2] small layout fixes. --- wiki/List_of_applications_executed_via_Biopython.md | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/wiki/List_of_applications_executed_via_Biopython.md b/wiki/List_of_applications_executed_via_Biopython.md index d60a3f300..622f33f6e 100644 --- a/wiki/List_of_applications_executed_via_Biopython.md +++ b/wiki/List_of_applications_executed_via_Biopython.md @@ -36,8 +36,7 @@ Bio.Align: Bio.Blast -- [NCBI - BLAST+](http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download) +- [NCBI BLAST+](http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download) Bio.Emboss: @@ -54,8 +53,4 @@ Bio.Phylo: - [FastTree](http://www.microbesonline.org/fasttree/) - [PhyML](http://www.atgc-montpellier.fr/phyml/) - [RAxML](http://sco.h-its.org/exelixis/web/software/raxml/index.html) -- [PAML](http://abacus.gene.ucl.ac.uk/software/) (baseml, - codeml, yn00) - -*I am not particularly fond of the title of this page (tiago), if you -have a better one, please correct* +- [PAML](http://abacus.gene.ucl.ac.uk/software/) (baseml, codeml, yn00)