From 38729ef1ec879b7044fd5f298430acf15c0c5413 Mon Sep 17 00:00:00 2001 From: nataled Date: Mon, 26 Aug 2024 18:00:03 +0000 Subject: [PATCH 1/4] [create-pull-request] automated change --- src/bioregistry/data/bioregistry.json | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 59c778750..7c78d2189 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -78167,6 +78167,27 @@ "repository": "https://github.com/EBISPOT/OBAN", "uri_format": "http://purl.org/oban/$1" }, + "obci": { + "contact": { + "email": "dan5@georgetown.edu", + "github": "nataled", + "name": "Darren A. Natale", + "orcid": "0000-0001-5809-9523" + }, + "contributor": { + "email": "dan5@georgetown.edu", + "github": "nataled", + "name": "Darren A. Natale", + "orcid": "0000-0001-5809-9523" + }, + "description": "The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects.", + "example": "0000001", + "github_request_issue": 1174, + "homepage": "https://github.com/clinical-biomarkers/OBCI", + "name": "Ontology for Biomarkers of Clinical Interest", + "pattern": "^\\d+$", + "publications": [] + }, "obcs": { "aberowl": { "description": "A biomedical ontology in the domain of biological and clinical statistics.", From 5069c4fadccaf30ed0d66de54fe50f898ccfea37 Mon Sep 17 00:00:00 2001 From: Ben Gyori Date: Fri, 30 Aug 2024 10:22:28 +0200 Subject: [PATCH 2/4] Add OWL link, change pattern and add reviewer --- src/bioregistry/data/bioregistry.json | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 7c78d2189..8f6686811 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -78181,12 +78181,18 @@ "orcid": "0000-0001-5809-9523" }, "description": "The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects.", - "example": "0000001", + "download.owl": "https://proteininformationresource.org/staff/nataled/OBCI/obci.owl", + "example": "000000001", "github_request_issue": 1174, "homepage": "https://github.com/clinical-biomarkers/OBCI", "name": "Ontology for Biomarkers of Clinical Interest", "pattern": "^\\d+$", - "publications": [] + "reviewer": { + "email": "b.gyori@northeastern.edu", + "github": "bgyori", + "name": "Benjamin M. Gyori", + "orcid": "0000-0001-9439-5346" + } }, "obcs": { "aberowl": { From df9b23e42f04a3d17ed1eb353745c79f91c914c4 Mon Sep 17 00:00:00 2001 From: Ben Gyori Date: Fri, 30 Aug 2024 10:38:54 +0200 Subject: [PATCH 3/4] Fix download owl key --- src/bioregistry/data/bioregistry.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 8f6686811..6ddd2c134 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -78181,7 +78181,7 @@ "orcid": "0000-0001-5809-9523" }, "description": "The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects.", - "download.owl": "https://proteininformationresource.org/staff/nataled/OBCI/obci.owl", + "download_owl": "https://proteininformationresource.org/staff/nataled/OBCI/obci.owl", "example": "000000001", "github_request_issue": 1174, "homepage": "https://github.com/clinical-biomarkers/OBCI", From 594b02982cd1a9a29918035171c1084e6c029fcc Mon Sep 17 00:00:00 2001 From: Ben Gyori Date: Fri, 30 Aug 2024 16:22:45 +0200 Subject: [PATCH 4/4] Add PURL as URL format --- src/bioregistry/data/bioregistry.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 6ddd2c134..2c81481f4 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -78192,7 +78192,8 @@ "github": "bgyori", "name": "Benjamin M. Gyori", "orcid": "0000-0001-9439-5346" - } + }, + "uri_format": "http://purl.obolibrary.org/obo/OBCI_$1" }, "obcs": { "aberowl": {