This module covers the background and analysis pipeline behind looking at ChIP-sequencing data: a technique that combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins. It is taught by Professor Alon Goren, an Assistant Professor in the UCSD School of Medicine (https://goren-lab.github.io/).
Before the first day of lecture, students will need to install ssh and IGV locally, on their laptops. Please follow these instructions.
- Day 1: https://docs.google.com/presentation/d/1puPaRlG-r6OdWHZpnWMsqmmvPDFPkzxL
- Day 2: https://docs.google.com/presentation/d/11ZJA9shgRdpID7_F7c9XMVksIAiIzkiV
-
Day 1 Lecture (January 17, 2023): https://drive.google.com/file/d/1BH3R9hGP-9rusI5_JYwdB9G87a76tTiF
-
Day 2 Lecture (January 19, 2023 problem with volume after 40 mins): https://drive.google.com/file/d/1Ps5GnFTFmaNDZyxb9XDLuZzVJeBAfkVM
-
Day 2 Lecture(2022): https://drive.google.com/file/d/1NwXqfgubS2_rVwqRoBFvDCx8A3pOsUME