diff --git a/breakseq2/breakseq_top.py b/breakseq2/breakseq_top.py index cf8fcbc..4335127 100755 --- a/breakseq2/breakseq_top.py +++ b/breakseq2/breakseq_top.py @@ -100,4 +100,4 @@ def breakseq2_workflow(sample=None, bplib=None, bplib_gff=None, bwa=None, samtoo min_overlap) gen_vcf.gff_to_vcf(reference, "%s/breakseq_genotyped.gff" % work, sample, "%s/breakseq.vcf" % work) - return 1 + return 0