environment.yml

name: Daedalus
channels:
  - bioconda/label/cf201901
  - https://repo.continuum.io/pkgs/free
  - conda-forge/label/cf201901
  - anaconda
  - guillaumecharbonnier
  - defaults
  - bioconda
  - conda-forge
  - dranew
dependencies:
  - bats=0.4.0=1
  - blas=1.0=mkl
  - boltons=19.2.0=py_0
  - ca-certificates=2018.11.29=ha4d7672_0
  - certifi=2018.11.29=py36_1000
  - contextlib2=0.6.0.post1=py_0
  - debtcollector=1.21.0=py36_0
  - decorator=4.4.1=py_0
  - dit=1.2.3=py_1
  - flash=1.2.11=hed695b0_5
  - httplib2=0.12.0=py36_1000
  - libgcc-ng=9.1.0=hdf63c60_0
  - libgfortran=3.0.0=1
  - libgfortran-ng=7.3.0=hdf63c60_0
  - libstdcxx-ng=9.1.0=hdf63c60_0
  - mkl=2017.0.3=0
  - muscle=3.8.1551=h2d50403_3
  - ncurses=5.9=10
  - networkx=2.4=py_0
  - numpy=1.13.3=py36ha266831_3
  - openssl=1.0.2p=h470a237_2
  - pandas=0.25.3=py36he6710b0_0
  - pbr=5.4.2=py_0
  - pip=19.3.1=py36_0
  - prettytable=0.7.2=py_3
  - python=3.6.2=0
  - python-dateutil=2.8.1=py_0
  - pytz=2019.3=py_0
  - readline=6.2=2
  - requests=2.12.5=py36_0
  - scipy=0.19.1=np113py36_0
  - seqtk=1.3=hed695b0_2
  - setuptools=36.4.0=py36_1
  - six=1.13.0=py36_0
  - sqlite=3.13.0=0
  - tk=8.5.18=0
  - wheel=0.29.0=py36_0
  - wrapt=1.10.11=py36_0
  - xz=5.2.3=0
  - zlib=1.2.11=0
  - samtools=1.9=h46bd0b3_0
  - bzip2=1.0.6=3
  - pip:
    - argparse==1.4.0
    - bio==1.2.8
    - boto==2.49.0
    - boto3==1.12.19
    - botocore==1.15.19
    - click==7.1.1
    - docutils==0.15.2
    - jmespath==0.9.5
    - joblib==0.14.1
    - plac==1.2.0
    - s3transfer==0.3.3
    - sample-sheet==0.1.0
    - scikit-learn==0.22.1
    - smart-open==1.9.0
    - sqlitedict==1.7.0
    - tabulate==0.8.6
    - terminaltables==3.1.0
    - urllib3==1.25.8