v1.0.0

Welcome! RicePilaf is short for Rice Post-GWAS/QTL Analysis dashboard. Ok, so we are not great at acronyms; but like a flavorful rice pilaf that combines many ingredients, this RicePilaf combines information from multiple rice databases to provide insights into your QTL/GWAS loci.

Installation and Usage

Please visit the wiki.

Changelog

• Updated the app (i.e., the version intended for local installation) so that its front-end styling is retained even when run offline
• Implemented cron jobs for (i) sending app usage logs to us and (ii) clearing the directory where results of previously run analyses are cached to prevent repeated computations. Note that these cron jobs are triggered only in the version of the app intended for deployment. Moreover, sending app usage logs is entirely optional and requires express consent from the organization deploying RicePilaf and an authorized service key from us. The logs will be used only to help us improve RicePilaf. More details here.
• Added a CI/CD workflow for checking if the Python imports in the codebase are sorted as per the convention followed by the isort utility
• Edited the Dockerfile for the workflow to explicitly install R 4.3. Previously, it installed the latest stable version of R in Debian "bullseye"