diff --git a/Dockerfile-app b/Dockerfile-app
index ce56955e..9a5d2f68 100644
--- a/Dockerfile-app
+++ b/Dockerfile-app
@@ -7,6 +7,7 @@ RUN set -ex
 
 RUN apt-get update \
   && apt-get install -y \
+  bedtools \
   git \
   python3-dev \
   python3-pip \
diff --git a/Dockerfile-workflow b/Dockerfile-workflow
index ef6e21b2..c53f43e8 100644
--- a/Dockerfile-workflow
+++ b/Dockerfile-workflow
@@ -11,6 +11,7 @@ RUN apt-get clean \
   && apt-get update \
   && apt-get install -y \
   build-essential \
+  bedtools \
   git \
   libcurl4-openssl-dev \
   libffi-dev \