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Hi! sorry to bother you again. I have a problem with SEVtras.ESAI_calculator. When i run the code this error comes out: FileNotFoundError: Did not find file quartaprova.h5ad/outs/raw_feature_bc_matrix/matrix.mtx.gz.
But i thought that this type of path was necessary only for SEVtras.SEv_recognizer. I show you the code that i run to start the analisys:
import SEVtras
SEVtras.ESAI_calculator(adata_ev_path='outputs_SEVtras/sEV_SEVtras.h5ad',
adata_cell_path='quartaprova.h5ad',
out_path='output_calculator',
Xraw=False,
OBSsample='batch',
OBScelltype='predicted_labels')
where "predicted_labels" is the name of the celltype column in 'quartaprova.h5ad'.
Is there something wrong? Thanks in advance for your help and you availability!
The text was updated successfully, but these errors were encountered:
The code you provided seems to be correct. This error means that SEVtras.ESAI_calculator is unable to find the h5ad file in the adata_cell_path you provided. Could you please double check the adata_cell_path where the error occurs? It should end with “.h5ad” exactly.
If the error persists after checking, run the test data on https://github.com/bioinfo-biols/SEVtras/tree/main/tests?
Hi! sorry to bother you again. I have a problem with SEVtras.ESAI_calculator. When i run the code this error comes out: FileNotFoundError: Did not find file quartaprova.h5ad/outs/raw_feature_bc_matrix/matrix.mtx.gz.
But i thought that this type of path was necessary only for SEVtras.SEv_recognizer. I show you the code that i run to start the analisys:
import SEVtras
SEVtras.ESAI_calculator(adata_ev_path='outputs_SEVtras/sEV_SEVtras.h5ad',
adata_cell_path='quartaprova.h5ad',
out_path='output_calculator',
Xraw=False,
OBSsample='batch',
OBScelltype='predicted_labels')
where "predicted_labels" is the name of the celltype column in 'quartaprova.h5ad'.
Is there something wrong? Thanks in advance for your help and you availability!
The text was updated successfully, but these errors were encountered: