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Error in the localization of input files for SEVtras.ESAI_calculator #33

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fusca9 opened this issue Dec 10, 2024 · 1 comment
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@fusca9
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fusca9 commented Dec 10, 2024

Hi! sorry to bother you again. I have a problem with SEVtras.ESAI_calculator. When i run the code this error comes out: FileNotFoundError: Did not find file quartaprova.h5ad/outs/raw_feature_bc_matrix/matrix.mtx.gz.
But i thought that this type of path was necessary only for SEVtras.SEv_recognizer. I show you the code that i run to start the analisys:
import SEVtras
SEVtras.ESAI_calculator(adata_ev_path='outputs_SEVtras/sEV_SEVtras.h5ad',
adata_cell_path='quartaprova.h5ad',
out_path='output_calculator',
Xraw=False,
OBSsample='batch',
OBScelltype='predicted_labels')
where "predicted_labels" is the name of the celltype column in 'quartaprova.h5ad'.
Is there something wrong? Thanks in advance for your help and you availability!

@RuiqiaoHe
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RuiqiaoHe commented Dec 11, 2024

The code you provided seems to be correct. This error means that SEVtras.ESAI_calculator is unable to find the h5ad file in the adata_cell_path you provided. Could you please double check the adata_cell_path where the error occurs? It should end with “.h5ad” exactly.
If the error persists after checking, run the test data on https://github.com/bioinfo-biols/SEVtras/tree/main/tests?

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