Java error when running CIRI_Full_v2.1.1.jar Pipeline

[smarhon]

I get this error message when I run CIRI_Full_v2.1.1.jar Pipeline .

Exception in thread "main" java.io.FileNotFoundException: RNASeq_LacZAZA_D5_2_CIRI/CIRI-AS_output/RNASeq_LacZAZA_D5_2_CIRI_jav.list (No such file or directory)
at java.io.FileInputStream.open0(Native Method)
at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.(FileInputStream.java:138)
at java.io.FileInputStream.(FileInputStream.java:93)
at java.io.FileReader.(FileReader.java:58)
at Merge3.getmerge(Merge3.java:114)
at CIRI_Full2.main(CIRI_Full2.java:280)

I checked CIRI-AS_output folder and not files are generated there.

[Kevinzjy]

Hi @smarhon , could you check the CIRI_output directory? Is the .ciri file successfully generated?