java error when running CIRI_VIS

[Alipe2021]

Hi guys,

I got an new error when running the command: java -jar /opt/biosoft/CIRI-full_v2.0/CIRI-vis_v1.4.jar -i out_merge_circRNA_detail.anno -l output_library_length.list -r zma_dna_v4.fa -min 1 -d test_outdir -o circRNA . I donot fix it. Can any one help me.

Exception in thread "main" java.lang.IndexOutOfBoundsException: Index 0 out of bounds for length 0
        at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64)
        at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70)
        at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248)
        at java.base/java.util.Objects.checkIndex(Objects.java:372)
        at java.base/java.util.ArrayList.get(ArrayList.java:459)
        at sample_MIX_all_easy4.paint(sample_MIX_all_easy4.java:1278)
        at CIRI_vis_test.main(CIRI_vis_test.java:457)

OS: opensuse 15.2
Java version:

CIRI-vis 1.4

[Kevinzjy]

Hi @Alipe2021 , could you try the latest version of CIRI-vis from https://github.com/bioinfo-biols/CIRI-vis ? The executable jar file is located under the bin directory.