Hackathon 2023/10 notes

[FynnBe]

We want

• developer documentation #352

  • for core developers
  • for core dev users

• bioimage archive datasets as model cards on bioimage.io

  • programmatic access for datasets #350

SAM related

• optional inputs (for points, masks and labels) spec-bioimage-io#527

cc: @k-dominik @constantinpape @Tomaz-Vieira @ctr26 @anwai98

[FynnBe]

spec discussion points:

• npy -> netCDF? see https://docs.xarray.dev/en/stable/user-guide/io.html
  • thanks for discussion @constantinpape , let's focus on OME-Zarr as a .npy alternative in the future instead
• take out pre-/postprocessing from io tensors
  • thanks for discussion @jdeschamps @constantinpape , yes, let's do that. more issues/infos following

[FynnBe]

pipeline discussion points:

• potential micro SAM pipeline
  • thanks for discussion @jdeschamps @constantinpape : yes, pipelines/workflows are planned. more info following