From 715a4b8f24c079b89ddfc146b2b223ad21aaedcb Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Mon, 3 Jun 2024 06:20:11 +0100 Subject: [PATCH] remove other information. --- ibaqpy/ibaq/peptide_normalization.py | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/ibaqpy/ibaq/peptide_normalization.py b/ibaqpy/ibaq/peptide_normalization.py index 117c861..7deb98d 100644 --- a/ibaqpy/ibaq/peptide_normalization.py +++ b/ibaqpy/ibaq/peptide_normalization.py @@ -533,6 +533,22 @@ def peptide_normalization( log2: bool, save_parquet: bool, ) -> None: + """ + + :param parquet: Parquet file with features + :param sdrf: SDRF file + :param min_aa: Min amino acids + :param min_unique: Min of unique peptides + :param remove_ids: Remove features for the given proteins + :param remove_decoy_contaminants: Remove contaminants and entrapment + :param remove_low_frequency_peptides: Remove low frecuency peptides + :param output: Output file + :param skip_normalization: Skip normalization + :param nmethod: normalization method for features + :param pnmethod: peptide normalization method + :param log2: log intensities for features before normalizing + :param save_parquet: Save to parque file. + """ if os.path.exists(output): raise FileExistsError("The output file already exists.")