scripts/config.sh in order to be successfully exported to the rest of the pipeline.
This folder will hold all the tools (dependencies) needed in this pipeline if they are not already installed:
| Dependency | Tested Version |
|---|---|
| SRA toolkit | v2.10.5 |
| EDirect | v13.8 |
| fastp | v0.20.0 |
| RNA-Bloom | v1.3.1 |
| salmon | v1.3.0 |
| TransDecoder | v5.5.0 |
| HMMER | v3.3.1 |
| cd-hit | v4.8.1 |
| SignalP | v3.0 |
| ProP | v1.0c |
| AMPlify | v1.0.0 |
| SABLE | v4.0 |