Simulation framework for biodiversity data cubes.<\/p>", + "description": "
This R package provides a simulation framework for biodiversity data cubes. This can start from simulating multiple species distributed in a landscape over a temporal scope. In a second phase, the simulation of a variety of observation processes and effort can generate actual occurrence datasets. Based on their (simulated) spatial uncertainty, occurrences can then be designated to a grid to form a data cube.<\/p>", "keywords": [ "simulation", "data cubes", diff --git a/CITATION.cff b/CITATION.cff index 55568cf..586f7f3 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -17,12 +17,19 @@ contact: family-names: Langeraert affiliation: Research Institute for Nature and Forest (INBO) orcid: 0000-0002-5900-8109 -doi: ~ +doi: 10.5281/zenodo.14038996 license: MIT repository-code: https://github.com/b-cubed-eu/gcube/ type: software -abstract: "Simulation framework for biodiversity data cubes." +abstract: "This R package provides a simulation framework for biodiversity data cubes. + This can start from simulating multiple species distributed in a landscape over + a temporal scope. In a second phase, the simulation of a variety of observation + processes and effort can generate actual occurrence datasets. Based on their (simulated) + spatial uncertainty, occurrences can then be designated to a grid to form a data + cube." identifiers: +- type: doi + value: 10.5281/zenodo.14038996 - type: url value: https://b-cubed-eu.github.io/gcube/ -version: 1.1.0 +version: 1.1.1 diff --git a/DESCRIPTION b/DESCRIPTION index 94ed51a..d87a5cc 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: gcube Title: Simulating Biodiversity Data Cubes -Version: 1.1.0 +Version: 1.1.1 Authors@R: c( person("Ward", "Langeraert", , "ward.langeraert@inbo.be", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-5900-8109", affiliation = "Research Institute for Nature and Forest (INBO)")), @@ -33,10 +33,17 @@ Authors@R: c( person("Research Institute for Nature and Forest (INBO)", , , "info@inbo.be", role = "cph"), person("European Union's Horizon Europe Research and Innovation Programme (ID No 101059592)", role = "fnd") ) -Description: Simulation framework for biodiversity data cubes. +Description: This R package provides a simulation framework for + biodiversity data cubes. This can start from simulating multiple + species distributed in a landscape over a temporal scope. In a second + phase, the simulation of a variety of observation processes and effort + can generate actual occurrence datasets. Based on their (simulated) + spatial uncertainty, occurrences can then be designated to a grid to + form a data cube. License: MIT + file LICENSE URL: https://github.com/b-cubed-eu/gcube, - https://b-cubed-eu.github.io/gcube/ + https://b-cubed-eu.github.io/gcube/, + https://doi.org/10.5281/zenodo.14038996 BugReports: https://github.com/b-cubed-eu/gcube/issues Imports: assertthat, diff --git a/NEWS.md b/NEWS.md index d28bc7b..8622657 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,9 @@ +# gcube 1.1.1 + +* Add more elaborate package description #102. +* Uniform naming of articles and start headings at h2 #103. +* Add DOI to citation file #104. + # gcube 1.1.0 * Publish release on Zenodo. diff --git a/_pkgdown.yml b/_pkgdown.yml index 7376859..f7a9a03 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -36,7 +36,7 @@ articles: - articles/grid-designation-process - title: "Multi-species approach" contents: - - articles/multi_species_approach + - articles/multi-species-approach reference: - title: "Core gcube workflow functions" diff --git a/codemeta.json b/codemeta.json index ea6a139..4c163a2 100644 --- a/codemeta.json +++ b/codemeta.json @@ -2,19 +2,19 @@ "@context": "https://doi.org/10.5063/schema/codemeta-2.0", "@type": "SoftwareSourceCode", "identifier": "gcube", - "description": "Simulation framework for biodiversity data cubes.", + "description": "gcube is an R package that provides a simulation framework for biodiversity data cubes. This can start from simulating multiple species distributed in a landscape over a temporal scope. In a second phase, the simulation of a variety of observation processes and effort can generate actual occurrence datasets. Based on their (simulated) spatial uncertainty, occurrences can then be designated to a grid to form a data cube.", "name": "gcube: Simulating Biodiversity Data Cubes", - "relatedLink": "https://b-cubed-eu.github.io/gcube/", + "relatedLink": ["https://b-cubed-eu.github.io/gcube/", "https://doi.org/10.5281/zenodo.14038996"], "codeRepository": "https://github.com/b-cubed-eu/gcube", "issueTracker": "https://github.com/b-cubed-eu/gcube/issues", "license": "https://spdx.org/licenses/MIT", - "version": "1.1.0", + "version": "1.1.1", "programmingLanguage": { "@type": "ComputerLanguage", "name": "R", "url": "https://r-project.org" }, - "runtimePlatform": "R version 4.4.1 (2024-06-14 ucrt)", + "runtimePlatform": "R version 4.4.2 (2024-10-31 ucrt)", "author": [ { "@type": "Person", @@ -334,7 +334,7 @@ }, "SystemRequirements": null }, - "fileSize": "557.447KB", + "fileSize": "558.437KB", "citation": [ { "@type": "SoftwareSourceCode", @@ -346,13 +346,16 @@ "familyName": "Langeraert" } }, - "name": "gcube: Simulating Biodiversity Data Cubes. Version 1.1.0", - "url": "https://b-cubed-eu.github.io/gcube/" + "name": "gcube: Simulating Biodiversity Data Cubes. Version 1.1.1", + "identifier": "10.5281/zenodo.14038996", + "url": "https://b-cubed-eu.github.io/gcube/", + "@id": "https://doi.org/10.5281/zenodo.14038996", + "sameAs": "https://doi.org/10.5281/zenodo.14038996" } ], "releaseNotes": "https://github.com/b-cubed-eu/gcube/blob/master/NEWS.md", "readme": "https://github.com/b-cubed-eu/gcube/blob/main/README.md", "contIntegration": ["https://github.com/b-cubed-eu/gcube/actions/workflows/check_on_different_r_os.yml", "https://app.codecov.io/gh/b-cubed-eu/gcube/"], "developmentStatus": "https://www.repostatus.org/#active", - "keywords": ["r", "r-package"] + "keywords": ["r", "r-package", "biodiversity-informatics", "data-cubes", "simulations"] } diff --git a/inst/CITATION b/inst/CITATION index bdf2bdb..54d7257 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -2,12 +2,13 @@ citHeader("To cite `gcube` in publications please use:") # begin checklist entry bibentry( bibtype = "Manual", - title = "gcube: Simulating Biodiversity Data Cubes. Version 1.1.0", + title = "gcube: Simulating Biodiversity Data Cubes. Version 1.1.1", author = c( author = c(person(given = "Ward", family = "Langeraert"))), year = 2024, url = "https://b-cubed-eu.github.io/gcube/", - abstract = "Simulation framework for biodiversity data cubes.", - textVersion = "Langeraert, Ward (2024) gcube: Simulating Biodiversity Data Cubes. Version 1.1.0. https://b-cubed-eu.github.io/gcube/", + abstract = "This R package provides a simulation framework for biodiversity data cubes. This can start from simulating multiple species distributed in a landscape over a temporal scope. In a second phase, the simulation of a variety of observation processes and effort can generate actual occurrence datasets. Based on their (simulated) spatial uncertainty, occurrences can then be designated to a grid to form a data cube.", + textVersion = "Langeraert, Ward (2024) gcube: Simulating Biodiversity Data Cubes. Version 1.1.1. https://b-cubed-eu.github.io/gcube/", keywords = "simulation; data cubes; B-Cubed; biodiversity; Monte-Carlo", + doi = "10.5281/zenodo.14038996", ) # end checklist entry diff --git a/vignettes/articles/multi_species_approach.Rmd b/vignettes/articles/multi-species-approach.Rmd similarity index 100% rename from vignettes/articles/multi_species_approach.Rmd rename to vignettes/articles/multi-species-approach.Rmd