From d4507bda4f6574506ef9215f2094c7a5649a5d93 Mon Sep 17 00:00:00 2001 From: LindoNkambule Date: Wed, 14 Feb 2024 10:52:43 -0500 Subject: [PATCH] another syntax fix --- gwaspy/phasing/shapeit5_phase.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gwaspy/phasing/shapeit5_phase.py b/gwaspy/phasing/shapeit5_phase.py index 5112267..acab3fd 100644 --- a/gwaspy/phasing/shapeit5_phase.py +++ b/gwaspy/phasing/shapeit5_phase.py @@ -68,7 +68,7 @@ def phase_common( --map /root/gwaspy/resources/maps/b38/{chrom}.b38.gmap.gz \ --output {j.phased_common_chunk['bcf']} \ --thread {ncpu-1} \ - --log {j.phased_common_chunk['chunk.log']} \ + --log {j.phased_common_chunk['log']} \ --filter-maf {maf} \ {f'--pedigree {pedigree}' if pedigree else ''} \ --region {region}