NAMESPACE

# Generated by roxygen2: do not edit by hand

export(add_pseudonode)
export(bifur_punish)
export(cherry_based_recon)
export(cherry_likelihood)
export(deltree_likelihood)
export(direct_assignment)
export(edgelength_inter)
export(emurate_node_path_withpseudonode)
export(get_consensus)
export(get_nni_node_noRT)
export(get_node_character)
export(get_parent)
export(get_probmatrix)
export(get_site_mutation)
export(get_sparenode_name)
export(initial_edgelength_pseudonode)
export(lineage_sim)
export(local_optiaml_withpseudoRT)
export(nj_tree)
export(nni_deltree)
export(nni_tree_noRT)
export(node_state_sim)
export(onehot_coding)
export(prefix_state)
export(remove_pseudonode)
export(reverse_onehot_encoding)
export(str_cherry_lik)
export(topology_simulation)
export(triplet_distance)
export(triplet_distance_weighted)
export(within_replicate_node)
import(ape)
import(caret)
import(phangorn)
import(phytools)
importFrom(stats,predict)
importFrom(stats,runif)
importFrom(utils,tail)