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setup.py
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setup.py
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from setuptools import setup, find_packages
from setuptools.command.build_py import build_py
import glob
import os
import pkg_resources
from civet import __version__, _program
setup(name='civet',
version=__version__,
packages=find_packages(),
scripts=[
"civet/scripts/civet.smk",
"civet/scripts/build_catchment_trees.smk",
"civet/scripts/snipit_runner.smk",
"civet/scripts/scorpio_runner.smk",
"civet/scripts/generate_background_data.smk",
"civet/scripts/global_snipit.smk"
],
package_data={"civet":["data/*","data/report_modules/*","data/map_data/*","tests/action_test_data/*.fa"]},
install_requires=[
"biopython>=1.70",
"mako>=1.1",
"tabulate==0.8.9",
"snipit"
],
description='Cluster Investivation & Virus Epidemiology Tool',
url='https://github.com/artic-network/civet',
author='Aine OToole, Verity Hill & Rambaut Group',
author_email='[email protected]',
entry_points="""
[console_scripts]
{program} = civet.command:main
""".format(program = _program),
include_package_data=True,
keywords=[],
zip_safe=False)