Can the RNA velo calculated by Dynamo combined with PAGA?

[billqiao1991]

scvelo can use sc.tl.paga(adata, groups='celltype', use_rna_velocity=True) to combine the results with PAGA, can Dynamo combine with PAGA？

[Sichao25]

Hi, thanks for raising this discussion. Dynamo doesn’t have an exact equivalent to PAGA, but it does offer similar features, such as the cell type transition graph in dyn.pd.state_graph() or the minimum spanning tree in dyn.tl.order_cells()/dyn.tl.DDRTree(). Additionally, you can combine Dynamo with scanpy/scvelo since they share a similar data structure. Let me know if this helps!