From 38b377354d03ff17a2d9293431a5bd5457476b05 Mon Sep 17 00:00:00 2001 From: svittoz Date: Wed, 12 Jun 2024 09:47:51 +0000 Subject: [PATCH 1/4] adding warning message for users --- docs/functionalities/omop-teva/quick-use-omop.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/docs/functionalities/omop-teva/quick-use-omop.md b/docs/functionalities/omop-teva/quick-use-omop.md index 9ad8f5f4..81c16f87 100644 --- a/docs/functionalities/omop-teva/quick-use-omop.md +++ b/docs/functionalities/omop-teva/quick-use-omop.md @@ -4,6 +4,9 @@ This tutorial demonstrates how the OMOP teva module can be quickly used to gener Simply apply ```generate_omop_teva``` function after loading the data. It will create a directory with one HTML per OMOP table. +!!! warning "It is recommended to run generate_omop_teva within spark-submit script" + Koalas framework with high volumetry processing might cause computationnal delays and memory issues. + ??? tip "Loading dataset" ```python From 526528a003c83a9c6afc61e1ba027755560006f5 Mon Sep 17 00:00:00 2001 From: svittoz <137794505+svittoz@users.noreply.github.com> Date: Wed, 12 Jun 2024 12:00:23 +0200 Subject: [PATCH 2/4] Update quick-use-omop.md --- docs/functionalities/omop-teva/quick-use-omop.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/functionalities/omop-teva/quick-use-omop.md b/docs/functionalities/omop-teva/quick-use-omop.md index 81c16f87..a7134b6e 100644 --- a/docs/functionalities/omop-teva/quick-use-omop.md +++ b/docs/functionalities/omop-teva/quick-use-omop.md @@ -4,7 +4,7 @@ This tutorial demonstrates how the OMOP teva module can be quickly used to gener Simply apply ```generate_omop_teva``` function after loading the data. It will create a directory with one HTML per OMOP table. -!!! warning "It is recommended to run generate_omop_teva within spark-submit script" +??? warning "It is recommended to run generate_omop_teva within spark-submit script" Koalas framework with high volumetry processing might cause computationnal delays and memory issues. ??? tip "Loading dataset" From a431d846cd9483d0ca771119e0551378b1a26916 Mon Sep 17 00:00:00 2001 From: svittoz <137794505+svittoz@users.noreply.github.com> Date: Wed, 12 Jun 2024 12:01:18 +0200 Subject: [PATCH 3/4] Update quick-use-omop.md --- docs/functionalities/omop-teva/quick-use-omop.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/functionalities/omop-teva/quick-use-omop.md b/docs/functionalities/omop-teva/quick-use-omop.md index a7134b6e..56fefc87 100644 --- a/docs/functionalities/omop-teva/quick-use-omop.md +++ b/docs/functionalities/omop-teva/quick-use-omop.md @@ -4,8 +4,8 @@ This tutorial demonstrates how the OMOP teva module can be quickly used to gener Simply apply ```generate_omop_teva``` function after loading the data. It will create a directory with one HTML per OMOP table. -??? warning "It is recommended to run generate_omop_teva within spark-submit script" - Koalas framework with high volumetry processing might cause computationnal delays and memory issues. +??? warning "It is recommended to run generate_omop_teva within spark-submit script instead of Jupyter Notebook" + Koalas framework with high volumetry processing in Jupyter Notebook might cause computationnal delay and memory issues. ??? tip "Loading dataset" From 0f1dc0f3f7fd14f020e2313e4abe76d1bea298b8 Mon Sep 17 00:00:00 2001 From: svittoz <137794505+svittoz@users.noreply.github.com> Date: Wed, 12 Jun 2024 13:33:38 +0200 Subject: [PATCH 4/4] Update quick-use-omop.md --- docs/functionalities/omop-teva/quick-use-omop.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/functionalities/omop-teva/quick-use-omop.md b/docs/functionalities/omop-teva/quick-use-omop.md index 56fefc87..859fa068 100644 --- a/docs/functionalities/omop-teva/quick-use-omop.md +++ b/docs/functionalities/omop-teva/quick-use-omop.md @@ -4,8 +4,8 @@ This tutorial demonstrates how the OMOP teva module can be quickly used to gener Simply apply ```generate_omop_teva``` function after loading the data. It will create a directory with one HTML per OMOP table. -??? warning "It is recommended to run generate_omop_teva within spark-submit script instead of Jupyter Notebook" - Koalas framework with high volumetry processing in Jupyter Notebook might cause computationnal delay and memory issues. +??? warning "Avoid Jupyter Notebook" + Koalas framework with high volumetry processing in Jupyter Notebook might cause computationnal delay and memory issues. Prefer spark-submit script to run OMOP Teva. ??? tip "Loading dataset"