diff --git a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactAction.java b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactAction.java
index 8ea120015609..ce88857f1b14 100644
--- a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactAction.java
+++ b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactAction.java
@@ -138,7 +138,8 @@ private void buildForTraditionalCompaction(
         }
         CompactorSourceBuilder sourceBuilder =
                 new CompactorSourceBuilder(identifier.getFullName(), table);
-        CompactorSinkBuilder sinkBuilder = new CompactorSinkBuilder(table);
+        CompactorSinkBuilder sinkBuilder =
+                new CompactorSinkBuilder(table).withFullCompaction(!isStreaming);
 
         sourceBuilder.withPartitionPredicate(getPredicate());
         DataStreamSource<RowData> source =
diff --git a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactDatabaseAction.java b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactDatabaseAction.java
index fda9ff695e1e..471c6fdd4da6 100644
--- a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactDatabaseAction.java
+++ b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/action/CompactDatabaseAction.java
@@ -259,7 +259,8 @@ private void buildForTraditionalCompaction(
         CompactorSourceBuilder sourceBuilder =
                 new CompactorSourceBuilder(fullName, table)
                         .withPartitionIdleTime(partitionIdleTime);
-        CompactorSinkBuilder sinkBuilder = new CompactorSinkBuilder(table);
+        CompactorSinkBuilder sinkBuilder =
+                new CompactorSinkBuilder(table).withFullCompaction(!isStreaming);
 
         DataStreamSource<RowData> source =
                 sourceBuilder.withEnv(env).withContinuousMode(isStreaming).build();
diff --git a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSink.java b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSink.java
index 7dc3ab1150b0..a0c830d73f58 100644
--- a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSink.java
+++ b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSink.java
@@ -29,14 +29,17 @@ public class CompactorSink extends FlinkSink<RowData> {
 
     private static final long serialVersionUID = 1L;
 
-    public CompactorSink(FileStoreTable table) {
+    private final boolean fullCompaction;
+
+    public CompactorSink(FileStoreTable table, boolean fullCompaction) {
         super(table, false);
+        this.fullCompaction = fullCompaction;
     }
 
     @Override
     protected OneInputStreamOperator<RowData, Committable> createWriteOperator(
             StoreSinkWrite.Provider writeProvider, String commitUser) {
-        return new StoreCompactOperator(table, writeProvider, commitUser);
+        return new StoreCompactOperator(table, writeProvider, commitUser, fullCompaction);
     }
 
     @Override
diff --git a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSinkBuilder.java b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSinkBuilder.java
index 926155cabf29..2173b1d34a72 100644
--- a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSinkBuilder.java
+++ b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/CompactorSinkBuilder.java
@@ -37,6 +37,8 @@ public class CompactorSinkBuilder {
 
     private DataStream<RowData> input;
 
+    private boolean fullCompaction;
+
     public CompactorSinkBuilder(FileStoreTable table) {
         this.table = table;
     }
@@ -46,6 +48,11 @@ public CompactorSinkBuilder withInput(DataStream<RowData> input) {
         return this;
     }
 
+    public CompactorSinkBuilder withFullCompaction(boolean fullCompaction) {
+        this.fullCompaction = fullCompaction;
+        return this;
+    }
+
     public DataStreamSink<?> build() {
         BucketMode bucketMode = table.bucketMode();
         switch (bucketMode) {
@@ -66,6 +73,6 @@ private DataStreamSink<?> buildForBucketAware() {
                         .orElse(null);
         DataStream<RowData> partitioned =
                 partition(input, new BucketsRowChannelComputer(), parallelism);
-        return new CompactorSink(table).sinkFrom(partitioned);
+        return new CompactorSink(table, fullCompaction).sinkFrom(partitioned);
     }
 }
diff --git a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/StoreCompactOperator.java b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/StoreCompactOperator.java
index bc7bb350df21..9b152a81ca22 100644
--- a/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/StoreCompactOperator.java
+++ b/paimon-flink/paimon-flink-common/src/main/java/org/apache/paimon/flink/sink/StoreCompactOperator.java
@@ -52,6 +52,7 @@ public class StoreCompactOperator extends PrepareCommitOperator<RowData, Committ
     private final FileStoreTable table;
     private final StoreSinkWrite.Provider storeSinkWriteProvider;
     private final String initialCommitUser;
+    private final boolean fullCompaction;
 
     private transient StoreSinkWriteState state;
     private transient StoreSinkWrite write;
@@ -61,7 +62,8 @@ public class StoreCompactOperator extends PrepareCommitOperator<RowData, Committ
     public StoreCompactOperator(
             FileStoreTable table,
             StoreSinkWrite.Provider storeSinkWriteProvider,
-            String initialCommitUser) {
+            String initialCommitUser,
+            boolean fullCompaction) {
         super(Options.fromMap(table.options()));
         Preconditions.checkArgument(
                 !table.coreOptions().writeOnly(),
@@ -69,6 +71,7 @@ public StoreCompactOperator(
         this.table = table;
         this.storeSinkWriteProvider = storeSinkWriteProvider;
         this.initialCommitUser = initialCommitUser;
+        this.fullCompaction = fullCompaction;
     }
 
     @Override
@@ -136,10 +139,7 @@ protected List<Committable> prepareCommit(boolean waitCompaction, long checkpoin
 
         try {
             for (Pair<BinaryRow, Integer> partitionBucket : waitToCompact) {
-                write.compact(
-                        partitionBucket.getKey(),
-                        partitionBucket.getRight(),
-                        !write.streamingMode());
+                write.compact(partitionBucket.getKey(), partitionBucket.getRight(), fullCompaction);
             }
         } catch (Exception e) {
             throw new RuntimeException("Exception happens while executing compaction.", e);
diff --git a/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/CompactorSinkITCase.java b/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/CompactorSinkITCase.java
index a5f260fb25a5..c38ac4b3d685 100644
--- a/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/CompactorSinkITCase.java
+++ b/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/CompactorSinkITCase.java
@@ -132,7 +132,7 @@ public void testCompact() throws Exception {
                         .withContinuousMode(false)
                         .withPartitionPredicate(predicate)
                         .build();
-        new CompactorSinkBuilder(table).withInput(source).build();
+        new CompactorSinkBuilder(table).withFullCompaction(true).withInput(source).build();
         env.execute();
 
         snapshot = snapshotManager.snapshot(snapshotManager.latestSnapshotId());
@@ -182,6 +182,7 @@ public void testCompactParallelism() throws Exception {
                                                 String.valueOf(sinkParalellism));
                                     }
                                 }))
+                .withFullCompaction(false)
                 .withInput(source)
                 .build();
 
@@ -267,7 +268,8 @@ protected StoreCompactOperator createCompactOperator(FileStoreTable table) {
                                 false,
                                 memoryPool,
                                 metricGroup),
-                "test");
+                "test",
+                true);
     }
 
     protected MultiTablesStoreCompactOperator createMultiTablesCompactOperator(
diff --git a/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/StoreCompactOperatorTest.java b/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/StoreCompactOperatorTest.java
index 3f2daedffd48..f8387e1fc41a 100644
--- a/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/StoreCompactOperatorTest.java
+++ b/paimon-flink/paimon-flink-common/src/test/java/org/apache/paimon/flink/sink/StoreCompactOperatorTest.java
@@ -53,7 +53,8 @@ public void testCompactExactlyOnce(boolean streamingMode) throws Exception {
                         getTableDefault(),
                         (table, commitUser, state, ioManager, memoryPool, metricGroup) ->
                                 compactRememberStoreWrite,
-                        "10086");
+                        "10086",
+                        !streamingMode);
 
         TypeSerializer<Committable> serializer =
                 new CommittableTypeInfo().createSerializer(new ExecutionConfig());