Mispositioned Graph

[AydinChavez]

Hi all,

I generated my own graph (based on this Andreis fantastic work) for BGP related routing data and in general it works.
However, the graph is not positioned centrally (x=0,y=0,z=0) and therefore the link/edge colors (which base on the graphs position) are all yellow as it is shown on attached image:

Does anyone know how to fix this positioning issue?

@anvaka : I can provide the source files if you want to debug.